AlfalfaGEDB | Msa1056860

M. sativa cultivar zhongmu-4 / Msa1056860

KEGG: K09420|K09422
GO: GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056860	AES78630.2	75.698	358	37	4	1	309	1	357	5.22e-180	511

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056860	sp\|Q9S7L2\|MYB98_ARATH	43.902	123	29	1	135	217	215	337	5.70e-25	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056860	G7KR96	75.698	358	37	4	1	309	1	357	2.49e-180	511

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TFs/TRs:

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Gene ID	Type	Classification
Msa1056860	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056860	MtrunA17_Chr7g0228531	75.910	357	37	4	1	309	76	431	0.0	512
Msa1056860	MtrunA17_Chr7g0228481	74.230	357	43	4	1	309	76	431	2.52e-180	504
Msa1056860	MtrunA17_Chr7g0233151	72.781	169	38	1	149	309	3	171	3.22e-82	246
Msa1056860	MtrunA17_Chr7g0228401	34.895	427	144	9	1	294	72	497	2.67e-64	210
Msa1056860	MtrunA17_Chr7g0233161	48.780	205	83	5	1	195	154	346	1.61e-54	181
Msa1056860	MtrunA17_Chr4g0046171	67.143	140	38	1	178	309	1	140	4.52e-53	170
Msa1056860	MtrunA17_Chr7g0233061	35.976	328	135	9	4	284	52	351	4.66e-48	164
Msa1056860	MtrunA17_Chr1g0177901	54.217	166	57	4	147	294	44	208	8.38e-44	149
Msa1056860	MtrunA17_Chr4g0046181	46.798	203	82	5	1	191	76	264	9.08e-36	130
Msa1056860	MtrunA17_Chr3g0117511	47.244	127	27	1	131	217	177	303	1.64e-28	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056860	AT4G18770.1	43.902	123	29	1	135	217	215	337	5.80e-26	107
Msa1056860	AT5G58850.1	32.727	220	87	6	112	273	80	296	9.00e-23	98.2
Msa1056860	AT5G40360.1	59.740	77	29	1	147	221	208	284	7.60e-22	94.7
Msa1056860	AT5G11050.1	44.144	111	22	1	134	204	102	212	8.99e-22	95.1
Msa1056860	AT3G27785.1	41.481	135	35	3	131	221	183	317	1.80e-21	94.4
Msa1056860	AT2G25230.1	53.333	75	35	0	147	221	76	150	6.93e-20	87.0
Msa1056860	AT5G40430.1	49.333	75	38	0	147	221	103	177	2.51e-17	80.5
Msa1056860	AT5G17800.1	35.036	137	81	2	146	282	142	270	1.38e-14	73.6
Msa1056860	AT5G02320.1	30.460	174	97	6	147	307	177	339	3.96e-14	73.2
Msa1056860	AT5G02320.2	30.460	174	97	6	147	307	177	339	3.96e-14	73.2

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Find 89 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCGCCTTGAAGTTT+AGG	0.337102	7_2:-35765756	None:intergenic
AAACCATCGCAGTCAATTTA+AGG	0.200439	7_2:+35765401	None:intergenic
AAAGCAGGAAATTGACCTCA+TGG	0.534744	7_2:+35771536	Msa1056860:CDS
AAATTGCAAGGAGGTTGCCG+GGG	0.666053	7_2:+35771166	Msa1056860:CDS
AACAAAATAGAAGTCATGCA+TGG	0.612673	7_2:+35765594	Msa1056860:CDS
AACGAACCCCAAGAAAATGA+TGG	0.520598	7_2:+35765800	Msa1056860:CDS
AAGGATCTCAATATAATCAA+AGG	0.551277	7_2:+35765884	Msa1056860:CDS
AATCAAAGGCCAATGGACAA+CGG	0.650287	7_2:+35765898	Msa1056860:CDS
AATCGGGGTAACAGTTCAAA+GGG	0.564615	7_2:+35771255	Msa1056860:CDS
AATGATGGGCTCGTTCTTAC+TGG	0.345362	7_2:+35765815	Msa1056860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAATAGAAGTCATGCA+TGG	+	chr7_2:35765594-35765613	Msa1056860:CDS	30.0%
TGTGCATCATAAACTAATGA+TGG	-	chr7_2:35765717-35765736	None:intergenic	30.0%
TTAGGCTTAATTGAAACAGA+TGG	-	chr7_2:35765741-35765760	None:intergenic	30.0%
TCAATTAAGCCTAAACTTCA+AGG	+	chr7_2:35765747-35765766	Msa1056860:CDS	30.0%
AAAATATCGCCTTGAAGTTT+AGG	-	chr7_2:35765759-35765778	None:intergenic	30.0%
TCAATATAATCAAAGGCCAA+TGG	+	chr7_2:35765891-35765910	Msa1056860:CDS	30.0%
CTTCATATACTTAGCAATCT+TGG	-	chr7_2:35766188-35766207	None:intergenic	30.0%
AAAGAGTGATTGGAAAAACA+AGG	-	chr7_2:35766448-35766467	None:intergenic	30.0%
TGAATGTATGAAAGAGTGAT+TGG	-	chr7_2:35766458-35766477	None:intergenic	30.0%
TAAGAGATAACTGGTCATAT+AGG	+	chr7_2:35767613-35767632	Msa1056860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	35765413	35771578	35765413	ID=Msa1056860;Name=Msa1056860
chr7_2	mRNA	35765413	35771578	35765413	ID=Msa1056860-mRNA-1;Parent=Msa1056860;Name=Msa1056860-mRNA-1;_AED=0.09;_eAED=0.19;_QI=55\|0\|0\|1\|0.25\|0.2\|5\|0\|310
chr7_2	exon	35765413	35765615	35765413	ID=Msa1056860-mRNA-1:exon:6944;Parent=Msa1056860-mRNA-1
chr7_2	exon	35765637	35765836	35765637	ID=Msa1056860-mRNA-1:exon:6945;Parent=Msa1056860-mRNA-1
chr7_2	exon	35765842	35765930	35765842	ID=Msa1056860-mRNA-1:exon:6946;Parent=Msa1056860-mRNA-1
chr7_2	exon	35766141	35766147	35766141	ID=Msa1056860-mRNA-1:exon:6947;Parent=Msa1056860-mRNA-1
chr7_2	exon	35771093	35771578	35771093	ID=Msa1056860-mRNA-1:exon:6948;Parent=Msa1056860-mRNA-1
chr7_2	five_prime_UTR	35765413	35765467	35765413	ID=Msa1056860-mRNA-1:five_prime_utr;Parent=Msa1056860-mRNA-1
chr7_2	CDS	35765468	35765615	35765468	ID=Msa1056860-mRNA-1:cds;Parent=Msa1056860-mRNA-1
chr7_2	CDS	35765637	35765836	35765637	ID=Msa1056860-mRNA-1:cds;Parent=Msa1056860-mRNA-1
chr7_2	CDS	35765842	35765930	35765842	ID=Msa1056860-mRNA-1:cds;Parent=Msa1056860-mRNA-1
chr7_2	CDS	35766141	35766147	35766141	ID=Msa1056860-mRNA-1:cds;Parent=Msa1056860-mRNA-1
chr7_2	CDS	35771093	35771578	35771093	ID=Msa1056860-mRNA-1:cds;Parent=Msa1056860-mRNA-1

Gene Sequence

>Msa1056860

ATGATTCCTTCCTCCAGGGACCCAATCTCTATGATCCCAAAGCCTTCATACAATGATGGTCACAACAATGGGTCCCAGAGAGAATTTCTCAGTGCTCGAAATCCGATGATCTTTGCACCAAACAATAACAAAATAGAAGTCATGCATGGAATTTGGGATTTTTCGAAGAAAAACATCTTTCAATATGGTGAAACTTCACAACCTAGGGTGAGTCCTGATCTATCACCATCATTAGTTTATGATGCACATCCATCTGTTTCAATTAAGCCTAAACTTCAAGGCGATATTTTTTTTTCTATGGTGGACTTGGAAACGAACCCCAAGAAAATGATGGGCTCGTTCTTACTGAGGCGGCAAAAGAGGATTCAGAATAATAGTGAGATTCAATATAAGGATCTCAATATAATCAAAGGCCAATGGACAACGGATGAGGGCAGGATTCTTAAGGAGTCATGGACCGAAGAGGAAGACAAAATATTGATCGAAGCTCACAAGATAGTTGGTAACAAGTGGGCGGAAATTGCAAGGAGGTTGCCGGGGCGCACCGAGAACTCCGTCAAGAACCACTGGAACGCCACTAAGCGCCGCAAGAATGCCAAGAAGAAGAATCGGGGTAACAGTTCAAAGGGAACACTACTTTTGAAATACATAATGGAAGTCACTTCTGCTACGAAAGTTGATAAGGAAATGATGAATAATTATCTGAGCATGATGAATATCGGGAATCAGCCAAATTATGAAAGTTCTGAGAGTGATTTTTTCTCTGAAGGTTTGACTACTCCGGAAGATGAAATTGGTGGCTATGTGCCAATGATGTTCAATGATGATGATGGAATGGCAAGTGGGTTTGGATCAAATGGAATGGAGTTTTTCCCTGAAATTCCTATAAAGCAGGAAATTGACCTCATGGAGAAGATATATAGAAACTCT

Protein sequence

>Msa1056860

MIPSSRDPISMIPKPSYNDGHNNGSQREFLSARNPMIFAPNNNKIEVMHGIWDFSKKNIFQYGETSQPRVSPDLSPSLVYDAHPSVSIKPKLQGDIFFSMVDLETNPKKMMGSFLLRRQKRIQNNSEIQYKDLNIIKGQWTTDEGRILKESWTEEEDKILIEAHKIVGNKWAEIARRLPGRTENSVKNHWNATKRRKNAKKKNRGNSSKGTLLLKYIMEVTSATKVDKEMMNNYLSMMNIGNQPNYESSESDFFSEGLTTPEDEIGGYVPMMFNDDDGMASGFGSNGMEFFPEIPIKQEIDLMEKIYRNS