Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056920 | XP_039682898.1 | 92.285 | 337 | 26 | 0 | 1 | 337 | 1 | 337 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056920 | sp|Q9SZL8|FRS5_ARATH | 28.571 | 287 | 188 | 5 | 50 | 336 | 72 | 341 | 3.26e-32 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056920 | A0A072TE13 | 87.138 | 311 | 25 | 1 | 1 | 311 | 1 | 296 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1056920 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056920 | MtrunA17_Chr1g0172971 | 77.273 | 132 | 15 | 1 | 1 | 132 | 1 | 117 | 1.81e-62 | 207 |
| Msa1056920 | MtrunA17_Chr7g0258861 | 34.276 | 283 | 165 | 5 | 54 | 334 | 13 | 276 | 5.97e-51 | 171 |
| Msa1056920 | MtrunA17_Chr2g0324011 | 32.616 | 279 | 168 | 4 | 57 | 335 | 16 | 274 | 1.34e-44 | 160 |
| Msa1056920 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 204 | 276 | 1 | 73 | 7.92e-43 | 142 |
| Msa1056920 | MtrunA17_Chr3g0082121 | 32.222 | 270 | 156 | 6 | 65 | 334 | 57 | 299 | 2.57e-37 | 141 |
| Msa1056920 | MtrunA17_Chr1g0202341 | 30.961 | 281 | 170 | 6 | 55 | 333 | 55 | 313 | 3.32e-37 | 141 |
| Msa1056920 | MtrunA17_Chr1g0164591 | 34.409 | 186 | 113 | 2 | 149 | 334 | 3 | 179 | 1.28e-33 | 126 |
| Msa1056920 | MtrunA17_Chr5g0448761 | 28.622 | 283 | 183 | 5 | 57 | 336 | 66 | 332 | 7.29e-32 | 126 |
| Msa1056920 | MtrunA17_Chr8g0363841 | 29.433 | 282 | 174 | 8 | 56 | 334 | 22 | 281 | 2.59e-31 | 124 |
| Msa1056920 | MtrunA17_Chr1g0203721 | 25.348 | 359 | 204 | 11 | 9 | 334 | 2 | 329 | 6.91e-31 | 123 |
| Msa1056920 | MtrunA17_Chr2g0296781 | 28.470 | 281 | 173 | 6 | 55 | 333 | 1 | 255 | 4.86e-30 | 120 |
| Msa1056920 | MtrunA17_Chr6g0458391 | 28.315 | 279 | 161 | 5 | 57 | 334 | 231 | 471 | 6.23e-29 | 117 |
| Msa1056920 | MtrunA17_Chr2g0287651 | 27.044 | 318 | 207 | 6 | 21 | 334 | 45 | 341 | 4.49e-27 | 112 |
| Msa1056920 | MtrunA17_Chr5g0441581 | 26.441 | 295 | 181 | 8 | 39 | 333 | 25 | 283 | 8.52e-25 | 105 |
| Msa1056920 | MtrunA17_Chr1g0203051 | 24.723 | 271 | 181 | 4 | 66 | 334 | 94 | 343 | 7.26e-24 | 102 |
| Msa1056920 | MtrunA17_Chr6g0477261 | 34.783 | 138 | 90 | 0 | 196 | 333 | 7 | 144 | 1.33e-22 | 99.0 |
| Msa1056920 | MtrunA17_Chr1g0198761 | 26.224 | 286 | 186 | 6 | 56 | 333 | 52 | 320 | 1.74e-22 | 98.6 |
| Msa1056920 | MtrunA17_Chr2g0291591 | 27.852 | 298 | 155 | 11 | 55 | 334 | 68 | 323 | 2.19e-22 | 98.2 |
| Msa1056920 | MtrunA17_Chr5g0431001 | 26.667 | 285 | 186 | 7 | 56 | 333 | 66 | 334 | 5.02e-21 | 94.0 |
| Msa1056920 | MtrunA17_Chr1g0196541 | 26.523 | 279 | 175 | 8 | 55 | 330 | 1 | 252 | 5.68e-21 | 94.0 |
| Msa1056920 | MtrunA17_Chr5g0440451 | 24.148 | 352 | 187 | 10 | 16 | 336 | 11 | 313 | 7.34e-20 | 90.9 |
| Msa1056920 | MtrunA17_Chr1g0207551 | 24.561 | 285 | 193 | 5 | 50 | 334 | 33 | 295 | 1.20e-19 | 90.1 |
| Msa1056920 | MtrunA17_Chr2g0329031 | 25.649 | 308 | 181 | 10 | 33 | 334 | 3 | 268 | 6.19e-19 | 87.8 |
| Msa1056920 | MtrunA17_Chr2g0276841 | 25.000 | 276 | 181 | 8 | 65 | 334 | 84 | 339 | 6.36e-19 | 87.8 |
| Msa1056920 | MtrunA17_Chr2g0290391 | 26.174 | 298 | 178 | 7 | 55 | 334 | 55 | 328 | 3.63e-18 | 85.5 |
| Msa1056920 | MtrunA17_Chr3g0080351 | 24.399 | 291 | 190 | 5 | 47 | 337 | 72 | 332 | 4.17e-17 | 82.4 |
| Msa1056920 | MtrunA17_Chr2g0287061 | 26.761 | 284 | 141 | 9 | 57 | 334 | 189 | 411 | 1.13e-16 | 81.3 |
| Msa1056920 | MtrunA17_Chr2g0294841 | 25.623 | 281 | 176 | 10 | 65 | 334 | 59 | 317 | 5.16e-16 | 79.3 |
| Msa1056920 | MtrunA17_Chr5g0448511 | 36.893 | 103 | 64 | 1 | 232 | 334 | 1 | 102 | 2.37e-15 | 77.0 |
| Msa1056920 | MtrunA17_Chr3g0118611 | 36.000 | 100 | 64 | 0 | 237 | 336 | 111 | 210 | 4.96e-15 | 76.3 |
| Msa1056920 | MtrunA17_Chr2g0291581 | 24.911 | 281 | 175 | 5 | 54 | 333 | 74 | 319 | 4.42e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1056920 | AT4G38180.1 | 28.571 | 287 | 188 | 5 | 50 | 336 | 72 | 341 | 3.32e-33 | 130 |
| Msa1056920 | AT5G28530.3 | 26.027 | 292 | 186 | 6 | 56 | 335 | 60 | 333 | 1.40e-22 | 99.4 |
| Msa1056920 | AT5G28530.2 | 26.027 | 292 | 186 | 6 | 56 | 335 | 60 | 333 | 1.40e-22 | 99.4 |
| Msa1056920 | AT5G28530.1 | 26.027 | 292 | 186 | 6 | 56 | 335 | 60 | 333 | 1.53e-22 | 99.0 |
| Msa1056920 | AT3G06250.2 | 25.418 | 299 | 159 | 7 | 39 | 334 | 178 | 415 | 1.62e-21 | 96.3 |
| Msa1056920 | AT3G06250.1 | 25.418 | 299 | 159 | 7 | 39 | 334 | 178 | 415 | 1.62e-21 | 96.3 |
| Msa1056920 | AT3G06250.3 | 25.418 | 299 | 159 | 7 | 39 | 334 | 178 | 415 | 1.62e-21 | 96.3 |
| Msa1056920 | AT4G15090.1 | 25.926 | 270 | 179 | 5 | 66 | 334 | 66 | 315 | 4.79e-20 | 91.7 |
| Msa1056920 | AT4G15090.5 | 25.926 | 270 | 179 | 5 | 66 | 334 | 66 | 315 | 4.79e-20 | 91.7 |
| Msa1056920 | AT4G15090.3 | 25.926 | 270 | 179 | 5 | 66 | 334 | 66 | 315 | 4.79e-20 | 91.7 |
| Msa1056920 | AT4G15090.2 | 25.926 | 270 | 179 | 5 | 66 | 334 | 66 | 315 | 4.79e-20 | 91.7 |
| Msa1056920 | AT4G15090.4 | 25.926 | 270 | 179 | 5 | 66 | 334 | 66 | 315 | 4.79e-20 | 91.7 |
| Msa1056920 | AT1G76320.3 | 25.275 | 273 | 168 | 8 | 66 | 334 | 12 | 252 | 3.07e-17 | 83.2 |
| Msa1056920 | AT1G76320.2 | 25.275 | 273 | 168 | 8 | 66 | 334 | 12 | 252 | 3.38e-17 | 83.2 |
| Msa1056920 | AT1G76320.1 | 25.275 | 273 | 168 | 8 | 66 | 334 | 12 | 252 | 3.45e-17 | 83.2 |
| Msa1056920 | AT1G76320.4 | 25.275 | 273 | 168 | 8 | 66 | 334 | 12 | 252 | 3.45e-17 | 83.2 |
| Msa1056920 | AT1G10240.2 | 23.358 | 274 | 186 | 7 | 65 | 333 | 62 | 316 | 6.05e-17 | 82.4 |
| Msa1056920 | AT1G10240.1 | 23.358 | 274 | 186 | 7 | 65 | 333 | 62 | 316 | 6.05e-17 | 82.4 |
| Msa1056920 | AT2G32250.5 | 25.243 | 309 | 163 | 9 | 24 | 330 | 13 | 255 | 9.75e-17 | 81.6 |
| Msa1056920 | AT2G32250.2 | 26.370 | 292 | 147 | 9 | 41 | 330 | 30 | 255 | 1.08e-16 | 81.6 |
| Msa1056920 | AT2G32250.4 | 26.370 | 292 | 147 | 9 | 41 | 330 | 30 | 255 | 1.08e-16 | 81.6 |
| Msa1056920 | AT2G32250.6 | 26.370 | 292 | 147 | 9 | 41 | 330 | 30 | 255 | 1.08e-16 | 81.6 |
| Msa1056920 | AT2G32250.1 | 26.370 | 292 | 147 | 9 | 41 | 330 | 30 | 255 | 1.08e-16 | 81.6 |
| Msa1056920 | AT2G32250.3 | 26.370 | 292 | 147 | 9 | 41 | 330 | 30 | 255 | 1.08e-16 | 81.6 |
| Msa1056920 | AT2G27110.2 | 32.075 | 106 | 72 | 0 | 229 | 334 | 181 | 286 | 3.18e-16 | 80.5 |
| Msa1056920 | AT2G27110.1 | 32.075 | 106 | 72 | 0 | 229 | 334 | 181 | 286 | 3.18e-16 | 80.5 |
| Msa1056920 | AT2G27110.3 | 32.075 | 106 | 72 | 0 | 229 | 334 | 36 | 141 | 4.08e-16 | 79.7 |
| Msa1056920 | AT1G80010.1 | 27.178 | 287 | 174 | 10 | 57 | 334 | 101 | 361 | 4.78e-16 | 79.7 |
| Msa1056920 | AT2G32250.7 | 26.217 | 267 | 131 | 8 | 66 | 330 | 12 | 214 | 8.57e-16 | 79.0 |
| Msa1056920 | AT2G32250.8 | 26.217 | 267 | 131 | 8 | 66 | 330 | 12 | 214 | 9.38e-16 | 79.0 |
| Msa1056920 | AT3G22170.2 | 23.549 | 293 | 189 | 6 | 48 | 337 | 67 | 327 | 1.22e-15 | 78.6 |
| Msa1056920 | AT3G22170.1 | 23.549 | 293 | 189 | 6 | 48 | 337 | 67 | 327 | 1.22e-15 | 78.6 |
| Msa1056920 | AT5G18960.2 | 22.772 | 303 | 169 | 9 | 37 | 334 | 197 | 439 | 1.99e-15 | 77.8 |
| Msa1056920 | AT5G18960.1 | 22.772 | 303 | 169 | 9 | 37 | 334 | 197 | 439 | 1.99e-15 | 77.8 |
| Msa1056920 | AT4G38170.1 | 40.000 | 85 | 46 | 2 | 251 | 334 | 24 | 104 | 2.60e-15 | 77.4 |
| Msa1056920 | AT1G52520.1 | 24.286 | 280 | 177 | 7 | 57 | 334 | 91 | 337 | 3.56e-13 | 70.9 |
| Msa1056920 | AT4G19990.3 | 22.433 | 263 | 162 | 7 | 57 | 319 | 27 | 247 | 5.99e-12 | 67.4 |
| Msa1056920 | AT4G19990.4 | 22.433 | 263 | 162 | 7 | 57 | 319 | 27 | 247 | 5.99e-12 | 67.4 |
| Msa1056920 | AT4G19990.7 | 22.433 | 263 | 162 | 7 | 57 | 319 | 41 | 261 | 7.17e-12 | 67.0 |
| Msa1056920 | AT4G19990.6 | 22.433 | 263 | 162 | 7 | 57 | 319 | 27 | 247 | 7.39e-12 | 67.0 |
| Msa1056920 | AT4G19990.2 | 22.433 | 263 | 162 | 7 | 57 | 319 | 27 | 247 | 7.39e-12 | 67.0 |
| Msa1056920 | AT4G19990.5 | 22.433 | 263 | 162 | 7 | 57 | 319 | 27 | 247 | 7.57e-12 | 67.0 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 7_2:+35901451 | Msa1056920:intron |
| TCTACTGTTGGCCTGTTGTT+AGG | 0.303711 | 7_2:-35900331 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 7_2:-35900522 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7_2:-35900888 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 7_2:-35901464 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7_2:+35900895 | Msa1056920:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7_2:+35900887 | Msa1056920:CDS |
| GAGAACGACTTATGAAGTTA+TGG | 0.401387 | 7_2:+35900597 | Msa1056920:CDS |
| ATGTGTATATGATATATAGA+TGG | 0.418726 | 7_2:+35900452 | Msa1056920:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7_2:+35900535 | Msa1056920:CDS |
| TTTAAGTCTGAAAACTGAAA+AGG | 0.436258 | 7_2:-35900649 | None:intergenic |
| TCCATGATTCTTTATTGCTA+GGG | 0.446849 | 7_2:-35900120 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.457608 | 7_2:-35900121 | None:intergenic |
| GAAAGGGTTAGTTGTAAAGC+TGG | 0.461387 | 7_2:+35900400 | Msa1056920:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 7_2:+35900565 | Msa1056920:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 7_2:+35900320 | Msa1056920:CDS |
| AGAACGACTTATGAAGTTAT+GGG | 0.475349 | 7_2:+35900598 | Msa1056920:CDS |
| CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 7_2:-35900505 | None:intergenic |
| GAAGTTATGGGTCAAAGAGT+TGG | 0.493804 | 7_2:+35900610 | Msa1056920:CDS |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 7_2:+35900283 | Msa1056920:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.504032 | 7_2:+35900119 | Msa1056920:CDS |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 7_2:+35900417 | Msa1056920:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 7_2:+35900249 | Msa1056920:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 7_2:+35900294 | Msa1056920:CDS |
| TTACAACTAACCCTTTCCTC+AGG | 0.520634 | 7_2:-35900394 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 7_2:+35900187 | Msa1056920:CDS |
| GAGAGTGGACATCTTAGTGT+TGG | 0.544996 | 7_2:+35900010 | Msa1056920:CDS |
| CCATGATTCTTTATTGCTAG+GGG | 0.548766 | 7_2:-35900119 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 7_2:+35900295 | Msa1056920:CDS |
| TATGATATATAGATGGGATG+TGG | 0.570470 | 7_2:+35900459 | Msa1056920:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.573489 | 7_2:-35900493 | None:intergenic |
| GTTATGGGTCAAAGAGTTGG+AGG | 0.585660 | 7_2:+35900613 | Msa1056920:CDS |
| ACCAGTGGACTGTCTACTGT+TGG | 0.592390 | 7_2:-35900343 | None:intergenic |
| TGTGTATATGATATATAGAT+GGG | 0.603858 | 7_2:+35900453 | Msa1056920:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 7_2:+35900040 | Msa1056920:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 7_2:+35899995 | Msa1056920:CDS |
| TTCACAAACTCAATAACCAG+TGG | 0.633415 | 7_2:-35900358 | None:intergenic |
| GCCAACAGTAGACAGTCCAC+TGG | 0.642242 | 7_2:+35900342 | Msa1056920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr7_2:35900166-35900185 | Msa1056920:CDS | 20.0% |
| !! | ATGTGTATATGATATATAGA+TGG | + | chr7_2:35900452-35900471 | Msa1056920:CDS | 20.0% |
| !! | TGTGTATATGATATATAGAT+GGG | + | chr7_2:35900453-35900472 | Msa1056920:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr7_2:35900766-35900785 | None:intergenic | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr7_2:35901186-35901205 | Msa1056920:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr7_2:35901249-35901268 | Msa1056920:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr7_2:35900166-35900185 | Msa1056920:CDS | 20.0% |
| !! | ATGTGTATATGATATATAGA+TGG | + | chr7_2:35900452-35900471 | Msa1056920:CDS | 20.0% |
| !! | TGTGTATATGATATATAGAT+GGG | + | chr7_2:35900453-35900472 | Msa1056920:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr7_2:35900766-35900785 | None:intergenic | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr7_2:35901186-35901205 | Msa1056920:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr7_2:35901249-35901268 | Msa1056920:intron | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr7_2:35900200-35900219 | Msa1056920:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr7_2:35900249-35900268 | Msa1056920:CDS | 25.0% |
| ! | TTTAAGTCTGAAAACTGAAA+AGG | - | chr7_2:35900652-35900671 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr7_2:35900800-35900819 | Msa1056920:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr7_2:35900887-35900906 | Msa1056920:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr7_2:35900913-35900932 | None:intergenic | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | + | chr7_2:35900956-35900975 | Msa1056920:intron | 25.0% |
| ! | TTCTTACTTATTTGAACTAC+AGG | + | chr7_2:35901031-35901050 | Msa1056920:intron | 25.0% |
| ! | TCTTACTTATTTGAACTACA+GGG | + | chr7_2:35901032-35901051 | Msa1056920:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr7_2:35901110-35901129 | Msa1056920:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr7_2:35901134-35901153 | Msa1056920:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr7_2:35901422-35901441 | Msa1056920:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr7_2:35901467-35901486 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr7_2:35900200-35900219 | Msa1056920:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr7_2:35900249-35900268 | Msa1056920:CDS | 25.0% |
| ! | TTTAAGTCTGAAAACTGAAA+AGG | - | chr7_2:35900652-35900671 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr7_2:35900800-35900819 | Msa1056920:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr7_2:35900887-35900906 | Msa1056920:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr7_2:35900913-35900932 | None:intergenic | 25.0% |
| !! | TTACTTTCATTAAGTTGTTC+TGG | + | chr7_2:35900956-35900975 | Msa1056920:intron | 25.0% |
| ! | TTCTTACTTATTTGAACTAC+AGG | + | chr7_2:35901031-35901050 | Msa1056920:intron | 25.0% |
| ! | TCTTACTTATTTGAACTACA+GGG | + | chr7_2:35901032-35901051 | Msa1056920:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr7_2:35901110-35901129 | Msa1056920:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr7_2:35901134-35901153 | Msa1056920:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr7_2:35901422-35901441 | Msa1056920:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr7_2:35901467-35901486 | None:intergenic | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | - | chr7_2:35900123-35900142 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr7_2:35900124-35900143 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr7_2:35900187-35900206 | Msa1056920:CDS | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | chr7_2:35900283-35900302 | Msa1056920:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr7_2:35900294-35900313 | Msa1056920:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr7_2:35900295-35900314 | Msa1056920:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr7_2:35900320-35900339 | Msa1056920:CDS | 30.0% | |
| TATGATATATAGATGGGATG+TGG | + | chr7_2:35900459-35900478 | Msa1056920:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr7_2:35900525-35900544 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr7_2:35900565-35900584 | Msa1056920:CDS | 30.0% |
| AGAACGACTTATGAAGTTAT+GGG | + | chr7_2:35900598-35900617 | Msa1056920:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr7_2:35900891-35900910 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr7_2:35900895-35900914 | Msa1056920:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr7_2:35900919-35900938 | Msa1056920:intron | 30.0% |
| TAAGAACTATAGTCAATCCT+AGG | - | chr7_2:35901017-35901036 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAG+GGG | + | chr7_2:35901033-35901052 | Msa1056920:intron | 30.0% | |
| ! | TTTAACCATGCTGTTTGTTT+AGG | + | chr7_2:35901056-35901075 | Msa1056920:intron | 30.0% |
| ! | TTAACCATGCTGTTTGTTTA+GGG | + | chr7_2:35901057-35901076 | Msa1056920:intron | 30.0% |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr7_2:35901098-35901117 | None:intergenic | 30.0% | |
| ! | ATTTAGTTTACGCATTGTTG+AGG | + | chr7_2:35901220-35901239 | Msa1056920:intron | 30.0% |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr7_2:35901451-35901470 | Msa1056920:intron | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | chr7_2:35900123-35900142 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr7_2:35900124-35900143 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr7_2:35900187-35900206 | Msa1056920:CDS | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | chr7_2:35900283-35900302 | Msa1056920:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr7_2:35900294-35900313 | Msa1056920:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr7_2:35900295-35900314 | Msa1056920:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr7_2:35900320-35900339 | Msa1056920:CDS | 30.0% | |
| TATGATATATAGATGGGATG+TGG | + | chr7_2:35900459-35900478 | Msa1056920:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr7_2:35900525-35900544 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr7_2:35900565-35900584 | Msa1056920:CDS | 30.0% |
| AGAACGACTTATGAAGTTAT+GGG | + | chr7_2:35900598-35900617 | Msa1056920:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr7_2:35900891-35900910 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr7_2:35900895-35900914 | Msa1056920:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr7_2:35900919-35900938 | Msa1056920:intron | 30.0% |
| TAAGAACTATAGTCAATCCT+AGG | - | chr7_2:35901017-35901036 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAG+GGG | + | chr7_2:35901033-35901052 | Msa1056920:intron | 30.0% | |
| ! | TTTAACCATGCTGTTTGTTT+AGG | + | chr7_2:35901056-35901075 | Msa1056920:intron | 30.0% |
| ! | TTAACCATGCTGTTTGTTTA+GGG | + | chr7_2:35901057-35901076 | Msa1056920:intron | 30.0% |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr7_2:35901098-35901117 | None:intergenic | 30.0% | |
| ! | ATTTAGTTTACGCATTGTTG+AGG | + | chr7_2:35901220-35901239 | Msa1056920:intron | 30.0% |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr7_2:35901451-35901470 | Msa1056920:intron | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | + | chr7_2:35899995-35900014 | Msa1056920:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr7_2:35900122-35900141 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAG+TGG | - | chr7_2:35900361-35900380 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr7_2:35900378-35900397 | Msa1056920:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr7_2:35900383-35900402 | Msa1056920:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr7_2:35900384-35900403 | Msa1056920:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr7_2:35900417-35900436 | Msa1056920:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr7_2:35900496-35900515 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr7_2:35900535-35900554 | Msa1056920:CDS | 35.0% | |
| GAGAACGACTTATGAAGTTA+TGG | + | chr7_2:35900597-35900616 | Msa1056920:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr7_2:35900684-35900703 | Msa1056920:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr7_2:35900687-35900706 | Msa1056920:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr7_2:35900755-35900774 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr7_2:35900756-35900775 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr7_2:35900808-35900827 | Msa1056920:CDS | 35.0% |
| AAATCCCTAAACAAACAGCA+TGG | - | chr7_2:35901064-35901083 | None:intergenic | 35.0% | |
| AGGCTAGCAATGACTAATTA+AGG | + | chr7_2:35901269-35901288 | Msa1056920:intron | 35.0% | |
| GGCTAGCAATGACTAATTAA+GGG | + | chr7_2:35901270-35901289 | Msa1056920:intron | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | + | chr7_2:35901274-35901293 | Msa1056920:intron | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | + | chr7_2:35901279-35901298 | Msa1056920:intron | 35.0% | |
| !!! | CATCGTAAGAGTGTTTTGTT+TGG | + | chr7_2:35901484-35901503 | Msa1056920:CDS | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr7_2:35899995-35900014 | Msa1056920:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr7_2:35900122-35900141 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAG+TGG | - | chr7_2:35900361-35900380 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr7_2:35900378-35900397 | Msa1056920:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr7_2:35900383-35900402 | Msa1056920:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr7_2:35900384-35900403 | Msa1056920:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr7_2:35900417-35900436 | Msa1056920:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr7_2:35900496-35900515 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr7_2:35900535-35900554 | Msa1056920:CDS | 35.0% | |
| GAGAACGACTTATGAAGTTA+TGG | + | chr7_2:35900597-35900616 | Msa1056920:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr7_2:35900684-35900703 | Msa1056920:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr7_2:35900687-35900706 | Msa1056920:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr7_2:35900755-35900774 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr7_2:35900756-35900775 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr7_2:35900808-35900827 | Msa1056920:CDS | 35.0% |
| AAATCCCTAAACAAACAGCA+TGG | - | chr7_2:35901064-35901083 | None:intergenic | 35.0% | |
| AGGCTAGCAATGACTAATTA+AGG | + | chr7_2:35901269-35901288 | Msa1056920:intron | 35.0% | |
| GGCTAGCAATGACTAATTAA+GGG | + | chr7_2:35901270-35901289 | Msa1056920:intron | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | + | chr7_2:35901274-35901293 | Msa1056920:intron | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | + | chr7_2:35901279-35901298 | Msa1056920:intron | 35.0% | |
| !!! | CATCGTAAGAGTGTTTTGTT+TGG | + | chr7_2:35901484-35901503 | Msa1056920:CDS | 35.0% |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr7_2:35900119-35900138 | Msa1056920:CDS | 40.0% | |
| TTACAACTAACCCTTTCCTC+AGG | - | chr7_2:35900397-35900416 | None:intergenic | 40.0% | |
| !! | GAAAGGGTTAGTTGTAAAGC+TGG | + | chr7_2:35900400-35900419 | Msa1056920:CDS | 40.0% |
| GAAGTTATGGGTCAAAGAGT+TGG | + | chr7_2:35900610-35900629 | Msa1056920:CDS | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr7_2:35901080-35901099 | Msa1056920:intron | 40.0% |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr7_2:35900119-35900138 | Msa1056920:CDS | 40.0% | |
| TTACAACTAACCCTTTCCTC+AGG | - | chr7_2:35900397-35900416 | None:intergenic | 40.0% | |
| !! | GAAAGGGTTAGTTGTAAAGC+TGG | + | chr7_2:35900400-35900419 | Msa1056920:CDS | 40.0% |
| GAAGTTATGGGTCAAAGAGT+TGG | + | chr7_2:35900610-35900629 | Msa1056920:CDS | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr7_2:35901080-35901099 | Msa1056920:intron | 40.0% |
| GAGAGTGGACATCTTAGTGT+TGG | + | chr7_2:35900010-35900029 | Msa1056920:CDS | 45.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr7_2:35900040-35900059 | Msa1056920:CDS | 45.0% |
| ! | TCTACTGTTGGCCTGTTGTT+AGG | - | chr7_2:35900334-35900353 | None:intergenic | 45.0% |
| GTTATGGGTCAAAGAGTTGG+AGG | + | chr7_2:35900613-35900632 | Msa1056920:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr7_2:35900691-35900710 | Msa1056920:CDS | 45.0% |
| ! | CAGCACATTTTGAACTGCCT+AGG | + | chr7_2:35900997-35901016 | Msa1056920:intron | 45.0% |
| ! | ACTGCCTAGGCATTTTGTCT+TGG | + | chr7_2:35901147-35901166 | Msa1056920:intron | 45.0% |
| ! | CTGCCTAGGCATTTTGTCTT+GGG | + | chr7_2:35901148-35901167 | Msa1056920:intron | 45.0% |
| TCACCCAAGACAAAATGCCT+AGG | - | chr7_2:35901154-35901173 | None:intergenic | 45.0% | |
| GAGAGTGGACATCTTAGTGT+TGG | + | chr7_2:35900010-35900029 | Msa1056920:CDS | 45.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr7_2:35900040-35900059 | Msa1056920:CDS | 45.0% |
| ! | TCTACTGTTGGCCTGTTGTT+AGG | - | chr7_2:35900334-35900353 | None:intergenic | 45.0% |
| GTTATGGGTCAAAGAGTTGG+AGG | + | chr7_2:35900613-35900632 | Msa1056920:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr7_2:35900691-35900710 | Msa1056920:CDS | 45.0% |
| ! | CAGCACATTTTGAACTGCCT+AGG | + | chr7_2:35900997-35901016 | Msa1056920:intron | 45.0% |
| ! | ACTGCCTAGGCATTTTGTCT+TGG | + | chr7_2:35901147-35901166 | Msa1056920:intron | 45.0% |
| ! | CTGCCTAGGCATTTTGTCTT+GGG | + | chr7_2:35901148-35901167 | Msa1056920:intron | 45.0% |
| TCACCCAAGACAAAATGCCT+AGG | - | chr7_2:35901154-35901173 | None:intergenic | 45.0% | |
| !! | ACCAGTGGACTGTCTACTGT+TGG | - | chr7_2:35900346-35900365 | None:intergenic | 50.0% |
| CTAAGGTAACGCGAATGCTC+TGG | - | chr7_2:35900508-35900527 | None:intergenic | 50.0% | |
| !! | ACCAGTGGACTGTCTACTGT+TGG | - | chr7_2:35900346-35900365 | None:intergenic | 50.0% |
| CTAAGGTAACGCGAATGCTC+TGG | - | chr7_2:35900508-35900527 | None:intergenic | 50.0% | |
| GCCAACAGTAGACAGTCCAC+TGG | + | chr7_2:35900342-35900361 | Msa1056920:CDS | 55.0% | |
| GCCAACAGTAGACAGTCCAC+TGG | + | chr7_2:35900342-35900361 | Msa1056920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 35899986 | 35901549 | 35899986 | ID=Msa1056920;Name=Msa1056920 |
| chr7_2 | mRNA | 35899986 | 35901549 | 35899986 | ID=Msa1056920-mRNA-1;Parent=Msa1056920;Name=Msa1056920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|339 |
| chr7_2 | exon | 35899986 | 35900916 | 35899986 | ID=Msa1056920-mRNA-1:exon:7012;Parent=Msa1056920-mRNA-1 |
| chr7_2 | exon | 35901461 | 35901549 | 35901461 | ID=Msa1056920-mRNA-1:exon:7013;Parent=Msa1056920-mRNA-1 |
| chr7_2 | CDS | 35899986 | 35900916 | 35899986 | ID=Msa1056920-mRNA-1:cds;Parent=Msa1056920-mRNA-1 |
| chr7_2 | CDS | 35901461 | 35901549 | 35901461 | ID=Msa1056920-mRNA-1:cds;Parent=Msa1056920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
