AlfalfaGEDB | Msa1056990

M. sativa cultivar zhongmu-4 / Msa1056990

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056990	XP_024627301.1	71.622	222	29	3	1	188	1	222	2.28e-93	284

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056990	sp\|Q6P819\|CNOT9_XENTR	50.857	175	54	2	33	177	28	200	8.29e-50	167

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056990	A0A396GV60	71.622	222	29	3	1	188	1	222	2.73e-92	282

TFs/TRs:

Gene ID	Type	Classification
Msa1056990	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056990	MtrunA17_Chr7g0224601	71.622	222	29	3	1	188	1	222	5.26e-96	282
Msa1056990	MtrunA17_Chr1g0177151	50.211	237	76	4	11	215	17	243	1.11e-72	221
Msa1056990	MtrunA17_Chr8g0392781	43.772	281	82	5	1	215	11	281	5.24e-63	199
Msa1056990	MtrunA17_Chr3g0099561	55.080	187	50	3	28	182	26	210	7.24e-59	187
Msa1056990	MtrunA17_Chr6g0477171	54.321	162	42	3	47	178	43	202	1.46e-47	157
Msa1056990	MtrunA17_Chr5g0444621	67.500	120	35	2	72	189	94	211	7.13e-46	153
Msa1056990	MtrunA17_Chr5g0444631	86.538	52	7	0	72	123	4	55	1.27e-26	97.4
Msa1056990	MtrunA17_Chr3g0083821	63.768	69	25	0	55	123	51	119	9.92e-24	92.0
Msa1056990	MtrunA17_Chr6g0477181	63.265	49	18	0	1	49	11	59	1.01e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1056990	AT3G20800.1	50.962	208	63	4	12	182	18	223	1.29e-58	187
Msa1056990	AT5G12980.1	44.248	226	84	4	22	215	29	244	6.15e-55	178
Msa1056990	AT2G32550.1	37.857	140	77	5	40	177	10	141	3.80e-21	88.2
Msa1056990	AT2G32550.3	37.857	140	77	5	40	177	65	196	1.14e-20	87.8
Msa1056990	AT2G32550.2	37.857	140	77	5	40	177	104	235	2.34e-20	87.8

Find 40 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGCCCAATTTGAGCATTTA+AGG	0.127092	7_2:-36206782	Msa1056990:CDS
CGGAACTTGCACCTTTATTA+TGG	0.186230	7_2:-36208240	Msa1056990:CDS
CAAGCCTTAAATGCTCAAAT+TGG	0.232859	7_2:+36206778	None:intergenic
TCAGAGGATTGGGTTATTTC+CGG	0.245535	7_2:-36208260	Msa1056990:intron
AAGGAAATCTATGCTTTCTT+TGG	0.255899	7_2:+36206066	None:intergenic
CCTTTATTATGGAATTCTTA+TGG	0.279542	7_2:-36208229	Msa1056990:CDS
AATAGATAAACTAACAGTTT+TGG	0.307053	7_2:+36205985	None:intergenic
CATAATAAAGGTGCAAGTTC+CGG	0.352274	7_2:+36208241	None:intergenic
TTTGTGCTGTGGTGCTAGAT+TGG	0.371012	7_2:+36209861	None:intergenic
CCATAAGAATTCCATAATAA+AGG	0.371929	7_2:+36208229	None:intergenic
AACTCAACAATCCTGATCTC+AGG	0.384176	7_2:-36209808	Msa1056990:CDS
TTGTGCTGTGGTGCTAGATT+GGG	0.395336	7_2:+36209862	None:intergenic
CTTGCTAGTCTTGGAGTCAT+TGG	0.399485	7_2:-36206759	Msa1056990:CDS
CATTTAAGGCTTGCTAGTCT+TGG	0.414086	7_2:-36206768	Msa1056990:CDS
CTAACTCGCTTGTCGTTTGA+AGG	0.424446	7_2:+36206802	None:intergenic
GATTGGGATGAAGCAGTTAG+AGG	0.438610	7_2:+36209878	None:intergenic
TCGCTTGTCGTTTGAAGGAA+TGG	0.449153	7_2:+36206807	None:intergenic
TTCAATAACAAGGCGTTCCA+TGG	0.458343	7_2:+36209829	None:intergenic
TGCCTACGCAGCATGGAAAT+CGG	0.460606	7_2:-36206019	Msa1056990:CDS
AGGGAAATTTCCCTGAGATC+AGG	0.474456	7_2:+36209797	None:intergenic
AAAATTATGTCAGATGATGA+TGG	0.481246	7_2:-36205806	Msa1056990:CDS
AAGCCTTAAATGCTCAAATT+GGG	0.502413	7_2:+36206779	None:intergenic
AGCACAAAGCATGGCATCCA+TGG	0.505480	7_2:-36209846	Msa1056990:CDS
GATGGTTTGATTTATGTTTG+TGG	0.509876	7_2:-36205788	Msa1056990:CDS
TTCCCTTCATGTTATCTCCA+AGG	0.517387	7_2:-36209780	Msa1056990:intron
TCTTGGAGTCATTGGTGCAT+TGG	0.530074	7_2:-36206751	Msa1056990:CDS
GAATTATCTCACTTCTAAGA+AGG	0.538844	7_2:+36206047	None:intergenic
TCCACTATGCCTACGCAGCA+TGG	0.546502	7_2:-36206026	Msa1056990:CDS
GGATGCCATGCTTTGTGCTG+TGG	0.548520	7_2:+36209850	None:intergenic
ACTCAACAATCCTGATCTCA+GGG	0.561365	7_2:-36209807	Msa1056990:CDS
AACCTTGGAGATAACATGAA+GGG	0.577392	7_2:+36209778	None:intergenic
TCCATGCTGCGTAGGCATAG+TGG	0.580220	7_2:+36206025	None:intergenic
AAACCTTGGAGATAACATGA+AGG	0.600549	7_2:+36209777	None:intergenic
TGCCGATTTCCATGCTGCGT+AGG	0.604124	7_2:+36206017	None:intergenic
TAGCACCACAGCACAAAGCA+TGG	0.612717	7_2:-36209855	Msa1056990:CDS
AGTCATTGGTGCATTGGTGA+AGG	0.613240	7_2:-36206745	Msa1056990:intron
AGTTTGATCAATTGATGTGA+AGG	0.628164	7_2:+36205703	None:intergenic
AACATGGTATTGGAAAGTGT+TGG	0.637520	7_2:-36205733	Msa1056990:CDS
GATTGTTGAGTTCAATAACA+AGG	0.670356	7_2:+36209819	None:intergenic
TGAGACAAAAGAGAATAACA+TGG	0.703854	7_2:+36205673	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAATATGATTAAATGAAAT+AGG	-	chr7_2:36206393-36206412	Msa1056990:intron	10.0%
!!!	AAAAAATTAACTTGAATAAT+TGG	-	chr7_2:36206463-36206482	Msa1056990:intron	10.0%
!!	TGATTAACATATATTAAAAT+GGG	+	chr7_2:36207116-36207135	None:intergenic	10.0%
!!	ATGATTAACATATATTAAAA+TGG	+	chr7_2:36207117-36207136	None:intergenic	10.0%
!!	TATGTTAATCATTATTAATT+AGG	-	chr7_2:36207125-36207144	Msa1056990:intron	10.0%
!!!	TTTTAAAGTTACTAATAAAT+TGG	+	chr7_2:36209060-36209079	None:intergenic	10.0%
!!!	ATTATTTTTATAATGTTCTT+AGG	-	chr7_2:36209160-36209179	Msa1056990:intron	10.0%
!!!	TTATTTTTATAATGTTCTTA+GGG	-	chr7_2:36209161-36209180	Msa1056990:intron	10.0%
!!	AAAATACATATTATGAATTT+GGG	-	chr7_2:36209284-36209303	Msa1056990:intron	10.0%
!!	GAAATTATTATAATTAACAA+AGG	+	chr7_2:36209451-36209470	None:intergenic	10.0%
!!!	TTTTTATTTTTGGGTTTTTT+TGG	-	chr7_2:36206009-36206028	Msa1056990:CDS	15.0%
!!!	TTTTATTTTTGGGTTTTTTT+GGG	-	chr7_2:36206010-36206029	Msa1056990:CDS	15.0%
!!!	TATATATCACATAACATTTT+AGG	+	chr7_2:36206436-36206455	None:intergenic	15.0%
!!!	AATGTCTTTATATGATTTTT+TGG	-	chr7_2:36206937-36206956	Msa1056990:intron	15.0%
!!!	AGAAAATGAAATTTTTCATT+TGG	-	chr7_2:36207043-36207062	Msa1056990:intron	15.0%
!!	TTCAAAAGTTAAAAAAAACA+AGG	+	chr7_2:36207650-36207669	None:intergenic	15.0%
!!	TTGAAAACATAAACATAAAT+TGG	+	chr7_2:36207722-36207741	None:intergenic	15.0%
!!	ATTGAAATCAATAAACATAT+TGG	+	chr7_2:36208023-36208042	None:intergenic	15.0%
!!!	CTTGATGTTAATAATTTTTA+TGG	-	chr7_2:36208886-36208905	Msa1056990:intron	15.0%
!!	AGATAGTTTATAAAATAACT+AGG	+	chr7_2:36209096-36209115	None:intergenic	15.0%
!!!	ATTCATAATATGTATTTTCA+AGG	+	chr7_2:36209282-36209301	None:intergenic	15.0%
!!	GAAAATACATATTATGAATT+TGG	-	chr7_2:36209283-36209302	Msa1056990:intron	15.0%
!!!	AAGATTCTTTAAAAAATAAG+TGG	+	chr7_2:36209372-36209391	None:intergenic	15.0%
!!	TAACAAAGGAAAAATAAATA+TGG	+	chr7_2:36209437-36209456	None:intergenic	15.0%
!!!	TCCATTTTTAATATCTTTCA+TGG	-	chr7_2:36205837-36205856	Msa1056990:intron	20.0%
!!!	CCATTTTTAATATCTTTCAT+GGG	-	chr7_2:36205838-36205857	Msa1056990:intron	20.0%
!!!	TTTATTTTTGGGTTTTTTTG+GGG	-	chr7_2:36206011-36206030	Msa1056990:CDS	20.0%
!!!	GAAGATTTGTTTCAATTTTA+AGG	-	chr7_2:36206147-36206166	Msa1056990:intron	20.0%
!!	TAAGAAATAGATGATTAGAA+AGG	-	chr7_2:36206338-36206357	Msa1056990:intron	20.0%
!!!	GGTGAGAATAATATTTTATT+AGG	-	chr7_2:36207146-36207165	Msa1056990:intron	20.0%
!!!	TTTCATTTTTTAAGTTTCAG+AGG	-	chr7_2:36207293-36207312	Msa1056990:intron	20.0%
!!!	TACTATTGAATTGTTTTTAC+AGG	-	chr7_2:36207363-36207382	Msa1056990:intron	20.0%
!!	AGAAAAAGTTATTATGCATT+TGG	-	chr7_2:36207556-36207575	Msa1056990:intron	20.0%
!!!	TTTTTTTAAAATTGTCCAAG+AGG	-	chr7_2:36207857-36207876	Msa1056990:intron	20.0%
!!	AGGAATGGATAAAAATATAA+AGG	+	chr7_2:36208750-36208769	None:intergenic	20.0%
!!	ACTCATAACAAAATAAGAAA+AGG	-	chr7_2:36208913-36208932	Msa1056990:intron	20.0%
!!	AGTAAACTAAATATTCACTA+CGG	+	chr7_2:36209219-36209238	None:intergenic	20.0%
!!!	TCTTTAAAAAATAAGTGGTT+AGG	+	chr7_2:36209367-36209386	None:intergenic	20.0%
!!!	AATAGATAAACTAACAGTTT+TGG	+	chr7_2:36209587-36209606	None:intergenic	20.0%
!!	AAGACTCTGTAAAAATAAAT+TGG	+	chr7_2:36209622-36209641	None:intergenic	20.0%
!!	TTCTTTATATGAATTTGACT+TGG	-	chr7_2:36209642-36209661	Msa1056990:intron	20.0%
!!	GAATAGAAAAAAAATTCAGA+AGG	+	chr7_2:36209677-36209696	None:intergenic	20.0%
!	CCCATGAAAGATATTAAAAA+TGG	+	chr7_2:36205841-36205860	None:intergenic	25.0%
!	TGTTACAAAATTGCATTAGT+TGG	-	chr7_2:36206213-36206232	Msa1056990:intron	25.0%
!	TGAATCTATGAAGCATAAAA+AGG	-	chr7_2:36206313-36206332	Msa1056990:intron	25.0%
!	TTGATTTCTATCATGAAAGT+CGG	+	chr7_2:36206515-36206534	None:intergenic	25.0%
!!	GATCTAGATTTTATGACAAA+TGG	+	chr7_2:36206639-36206658	None:intergenic	25.0%
!	ATATGATTAGAATCTCATTC+TGG	+	chr7_2:36206985-36207004	None:intergenic	25.0%
!!!	TTTTTTAAGTTTCAGAGGAT+TGG	-	chr7_2:36207298-36207317	Msa1056990:intron	25.0%
!!!	TTTTTAAGTTTCAGAGGATT+GGG	-	chr7_2:36207299-36207318	Msa1056990:intron	25.0%
!	CCATAAGAATTCCATAATAA+AGG	+	chr7_2:36207343-36207362	None:intergenic	25.0%
!	CCTTTATTATGGAATTCTTA+TGG	-	chr7_2:36207340-36207359	Msa1056990:intron	25.0%
!!	TGTATGTGTCTTAATTTTAG+TGG	-	chr7_2:36207531-36207550	Msa1056990:intron	25.0%
!	AAATTGGTGAAAGAATGAAA+CGG	+	chr7_2:36207706-36207725	None:intergenic	25.0%
!	ACAAAAGAGACATGATTATA+AGG	-	chr7_2:36207790-36207809	Msa1056990:intron	25.0%
!	CAAAAGAGACATGATTATAA+GGG	-	chr7_2:36207791-36207810	Msa1056990:intron	25.0%
!	GTTTAATATTGTACCATCAA+TGG	-	chr7_2:36207899-36207918	Msa1056990:intron	25.0%
!	ATTTGAACTTATTCCATTGA+TGG	+	chr7_2:36207915-36207934	None:intergenic	25.0%
!!	GATATATTGAAGTTATTTCC+TGG	+	chr7_2:36208072-36208091	None:intergenic	25.0%
!!	GAAATGACATTTTTGTATCA+GGG	+	chr7_2:36208366-36208385	None:intergenic	25.0%
!!	AGAAATGACATTTTTGTATC+AGG	+	chr7_2:36208367-36208386	None:intergenic	25.0%
!!	ACAAAAATGTCATTTCTCAA+TGG	-	chr7_2:36208370-36208389	Msa1056990:intron	25.0%
!!	AGAAATCTAGAACAATTAAG+AGG	+	chr7_2:36208415-36208434	None:intergenic	25.0%
!	AGCTGCAAATAATTAAGAAA+TGG	+	chr7_2:36208721-36208740	None:intergenic	25.0%
!	TTGTGATGTGAAACTATATT+TGG	-	chr7_2:36208967-36208986	Msa1056990:intron	25.0%
!!	ACATGTTCAATTTTCGTAAA+AGG	+	chr7_2:36209120-36209139	None:intergenic	25.0%
!	AAAATTATGTCAGATGATGA+TGG	-	chr7_2:36209763-36209782	Msa1056990:intron	25.0%
	GATTGTTGAGTTCAATAACA+AGG	+	chr7_2:36205753-36205772	None:intergenic	30.0%
	AAGTAGATTGGTAAAAACCT+TGG	+	chr7_2:36205809-36205828	None:intergenic	30.0%
	TGGACAAAAGAAAAGTAGAT+TGG	+	chr7_2:36205821-36205840	None:intergenic	30.0%
	TCTCAAGAAATCCATATCTT+TGG	-	chr7_2:36205863-36205882	Msa1056990:intron	30.0%
	GTTCATTCTTTAGTGTATCA+AGG	-	chr7_2:36206072-36206091	Msa1056990:CDS	30.0%
	TTATGCTTCATAGATTCACA+GGG	+	chr7_2:36206311-36206330	None:intergenic	30.0%
	TTTATGCTTCATAGATTCAC+AGG	+	chr7_2:36206312-36206331	None:intergenic	30.0%
	TGCTTTACATGTTCTCTTAA+AGG	-	chr7_2:36206716-36206735	Msa1056990:intron	30.0%
	TAGATAATTCCTTGAAGAGT+TGG	+	chr7_2:36206810-36206829	None:intergenic	30.0%
	TTCAAACATTCGTTGAGAAA+GGG	+	chr7_2:36206851-36206870	None:intergenic	30.0%
!	TTTGGATAACTGTGATTTTC+TGG	-	chr7_2:36206955-36206974	Msa1056990:intron	30.0%
	GTTCTTTGCTTTAGTACATT+TGG	-	chr7_2:36207429-36207448	Msa1056990:intron	30.0%
!!	GCTAAGAGTATTACAAACAA+GGG	+	chr7_2:36207465-36207484	None:intergenic	30.0%
!	CGATTGATCATTTGTTACTA+AGG	-	chr7_2:36207484-36207503	Msa1056990:intron	30.0%
!	CAGATAGTGATAATTTTTCC+AGG	-	chr7_2:36208051-36208070	Msa1056990:intron	30.0%
	TCATGGATTTGAATTCTCTA+CGG	-	chr7_2:36208607-36208626	Msa1056990:intron	30.0%
	AAGCCTTAAATGCTCAAATT+GGG	+	chr7_2:36208793-36208812	None:intergenic	30.0%
!!	CGGAAAAAAACTACTTTTAG+AGG	+	chr7_2:36209199-36209218	None:intergenic	30.0%
!	AAACTTACCAAGAGCATAAT+AGG	+	chr7_2:36209248-36209267	None:intergenic	30.0%
	TGACTATCATGTACAAAAGA+AGG	+	chr7_2:36209473-36209492	None:intergenic	30.0%
	AAGGAAATCTATGCTTTCTT+TGG	+	chr7_2:36209506-36209525	None:intergenic	30.0%
!	GAATTATCTCACTTCTAAGA+AGG	+	chr7_2:36209525-36209544	None:intergenic	30.0%
	CAGAGATGATAACTTTGATT+AGG	+	chr7_2:36209719-36209738	None:intergenic	30.0%
!	GATGGTTTGATTTATGTTTG+TGG	-	chr7_2:36209781-36209800	Msa1056990:CDS	30.0%
!!!	AGTAGTTCAAGTTTTGAACA+TGG	-	chr7_2:36209820-36209839	Msa1056990:CDS	30.0%
!!!	TCAAGTTTTGAACATGGTAT+TGG	-	chr7_2:36209826-36209845	Msa1056990:CDS	30.0%
	AGTTTGATCAATTGATGTGA+AGG	+	chr7_2:36209869-36209888	None:intergenic	30.0%
	TGAGACAAAAGAGAATAACA+TGG	+	chr7_2:36209899-36209918	None:intergenic	30.0%
	AACCTTGGAGATAACATGAA+GGG	+	chr7_2:36205794-36205813	None:intergenic	35.0%
	AAACCTTGGAGATAACATGA+AGG	+	chr7_2:36205795-36205814	None:intergenic	35.0%
	TCACAACTTCTCCAAAGATA+TGG	+	chr7_2:36205877-36205896	None:intergenic	35.0%
	TTCTATCATGAAAGTCGGAT+TGG	+	chr7_2:36206510-36206529	None:intergenic	35.0%
	TTTGTGATATGCAAGTGAGA+TGG	+	chr7_2:36206663-36206682	None:intergenic	35.0%
	ACATGTAATCCAACTCTTCA+AGG	-	chr7_2:36206798-36206817	Msa1056990:CDS	35.0%
	GTTCAAACATTCGTTGAGAA+AGG	+	chr7_2:36206852-36206871	None:intergenic	35.0%
	TGTGACTAAGTCTACTGAAA+GGG	+	chr7_2:36206902-36206921	None:intergenic	35.0%
	ATGTGACTAAGTCTACTGAA+AGG	+	chr7_2:36206903-36206922	None:intergenic	35.0%
!	CATAATAAAGGTGCAAGTTC+CGG	+	chr7_2:36207331-36207350	None:intergenic	35.0%
!!	CGCTAAGAGTATTACAAACA+AGG	+	chr7_2:36207466-36207485	None:intergenic	35.0%
	ACATGATTATAAGGGAGAGT+TGG	-	chr7_2:36207799-36207818	Msa1056990:intron	35.0%
	AGGGAGAGTTGGAAAATAAA+AGG	-	chr7_2:36207810-36207829	Msa1056990:intron	35.0%
!!!	TGTCATTTTACAACAGCTTG+AGG	+	chr7_2:36207940-36207959	None:intergenic	35.0%
!	TCCGCTGTTGAATTTTACTT+AGG	-	chr7_2:36208099-36208118	Msa1056990:intron	35.0%
	GCCTAAGTAAAATTCAACAG+CGG	+	chr7_2:36208103-36208122	None:intergenic	35.0%
!	CATGTTTTCTTTACAGTGTG+TGG	-	chr7_2:36208333-36208352	Msa1056990:intron	35.0%
	GGTTAGATGTAGTCAATTGT+AGG	-	chr7_2:36208632-36208651	Msa1056990:intron	35.0%
	TAGCCCAATTTGAGCATTTA+AGG	-	chr7_2:36208787-36208806	Msa1056990:intron	35.0%
	CAAGCCTTAAATGCTCAAAT+TGG	+	chr7_2:36208794-36208813	None:intergenic	35.0%
	TTGCATTCCTATTATGCTCT+TGG	-	chr7_2:36209238-36209257	Msa1056990:intron	35.0%
!	CTTTTGTACATGATAGTCAC+AGG	-	chr7_2:36209474-36209493	Msa1056990:intron	35.0%
	ATCAAAGTTATCATCTCTGC+AGG	-	chr7_2:36209720-36209739	Msa1056990:intron	35.0%
!	AACATGGTATTGGAAAGTGT+TGG	-	chr7_2:36209836-36209855	Msa1056990:CDS	35.0%
!	TTCAATAACAAGGCGTTCCA+TGG	+	chr7_2:36205743-36205762	None:intergenic	40.0%
	AACTCAACAATCCTGATCTC+AGG	-	chr7_2:36205761-36205780	Msa1056990:CDS	40.0%
	ACTCAACAATCCTGATCTCA+GGG	-	chr7_2:36205762-36205781	Msa1056990:CDS	40.0%
	TTCCCTTCATGTTATCTCCA+AGG	-	chr7_2:36205789-36205808	Msa1056990:CDS	40.0%
	GGATTACATGTGTGTGTTCA+GGG	+	chr7_2:36206789-36206808	None:intergenic	40.0%
	TGGATTACATGTGTGTGTTC+AGG	+	chr7_2:36206790-36206809	None:intergenic	40.0%
	GTGACTAAGTCTACTGAAAG+GGG	+	chr7_2:36206901-36206920	None:intergenic	40.0%
!	TCAGAGGATTGGGTTATTTC+CGG	-	chr7_2:36207309-36207328	Msa1056990:intron	40.0%
	CGGAACTTGCACCTTTATTA+TGG	-	chr7_2:36207329-36207348	Msa1056990:intron	40.0%
	GGCAAAAAACACAACAGTAG+TGG	-	chr7_2:36207577-36207596	Msa1056990:intron	40.0%
	AAATTCAACAGCGGAGTAGT+AGG	+	chr7_2:36208094-36208113	None:intergenic	40.0%
!!	ACATGAGAGAAAAGTGCTAG+AGG	+	chr7_2:36208318-36208337	None:intergenic	40.0%
!	AGTGCTCTGAATAAGAGTCA+TGG	-	chr7_2:36208590-36208609	Msa1056990:intron	40.0%
!!	CATTTAAGGCTTGCTAGTCT+TGG	-	chr7_2:36208801-36208820	Msa1056990:intron	40.0%
	GATTGGGATGAAGCAGTTAG+AGG	+	chr7_2:36205694-36205713	None:intergenic	45.0%
!	TTGTGCTGTGGTGCTAGATT+GGG	+	chr7_2:36205710-36205729	None:intergenic	45.0%
!	TTTGTGCTGTGGTGCTAGAT+TGG	+	chr7_2:36205711-36205730	None:intergenic	45.0%
	AGGGAAATTTCCCTGAGATC+AGG	+	chr7_2:36205775-36205794	None:intergenic	45.0%
!!	CTGCACTGTCACACTAGTTT+TGG	-	chr7_2:36205964-36205983	Msa1056990:intron	45.0%
	GGATTTGAATTCTCTACGGC+TGG	-	chr7_2:36208611-36208630	Msa1056990:intron	45.0%
!	TCGCTTGTCGTTTGAAGGAA+TGG	+	chr7_2:36208765-36208784	None:intergenic	45.0%
!	CTAACTCGCTTGTCGTTTGA+AGG	+	chr7_2:36208770-36208789	None:intergenic	45.0%
!!	CTTGCTAGTCTTGGAGTCAT+TGG	-	chr7_2:36208810-36208829	Msa1056990:intron	45.0%
	TCTTGGAGTCATTGGTGCAT+TGG	-	chr7_2:36208818-36208837	Msa1056990:intron	45.0%
!	AGTCATTGGTGCATTGGTGA+AGG	-	chr7_2:36208824-36208843	Msa1056990:intron	45.0%
!!!	TATTTTATTGTTTTTATTTT+TGG	-	chr7_2:36205999-36206018	Msa1056990:intron	5.0%
!!!	ATTTTATTGTTTTTATTTTT+GGG	-	chr7_2:36206000-36206019	Msa1056990:CDS	5.0%
	TAGCACCACAGCACAAAGCA+TGG	-	chr7_2:36205714-36205733	Msa1056990:CDS	50.0%
	AGCACAAAGCATGGCATCCA+TGG	-	chr7_2:36205723-36205742	Msa1056990:CDS	50.0%
	TGCCTACGCAGCATGGAAAT+CGG	-	chr7_2:36209550-36209569	Msa1056990:intron	50.0%
	GGATGCCATGCTTTGTGCTG+TGG	+	chr7_2:36205722-36205741	None:intergenic	55.0%
	TCCAAGAGGCTGTAGCTCAG+TGG	-	chr7_2:36207871-36207890	Msa1056990:intron	55.0%
	ACCACTGAGCTACAGCCTCT+TGG	+	chr7_2:36207875-36207894	None:intergenic	55.0%
	TCCACTATGCCTACGCAGCA+TGG	-	chr7_2:36209543-36209562	Msa1056990:intron	55.0%
	TCCATGCTGCGTAGGCATAG+TGG	+	chr7_2:36209547-36209566	None:intergenic	55.0%
!!	TGCCGATTTCCATGCTGCGT+AGG	+	chr7_2:36209555-36209574	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	36205664	36209927	36205664	ID=Msa1056990;Name=Msa1056990
chr7_2	mRNA	36205664	36209927	36205664	ID=Msa1056990-mRNA-1;Parent=Msa1056990;Name=Msa1056990-mRNA-1;_AED=0.21;_eAED=0.24;_QI=0\|0\|0\|1\|1\|1\|6\|0\|218
chr7_2	exon	36209781	36209927	36209781	ID=Msa1056990-mRNA-1:exon:7080;Parent=Msa1056990-mRNA-1
chr7_2	exon	36208207	36208278	36208207	ID=Msa1056990-mRNA-1:exon:7079;Parent=Msa1056990-mRNA-1
chr7_2	exon	36207200	36207242	36207200	ID=Msa1056990-mRNA-1:exon:7078;Parent=Msa1056990-mRNA-1
chr7_2	exon	36206746	36206852	36206746	ID=Msa1056990-mRNA-1:exon:7077;Parent=Msa1056990-mRNA-1
chr7_2	exon	36206000	36206101	36206000	ID=Msa1056990-mRNA-1:exon:7076;Parent=Msa1056990-mRNA-1
chr7_2	exon	36205664	36205849	36205664	ID=Msa1056990-mRNA-1:exon:7075;Parent=Msa1056990-mRNA-1
chr7_2	CDS	36209781	36209927	36209781	ID=Msa1056990-mRNA-1:cds;Parent=Msa1056990-mRNA-1
chr7_2	CDS	36208207	36208278	36208207	ID=Msa1056990-mRNA-1:cds;Parent=Msa1056990-mRNA-1
chr7_2	CDS	36207200	36207242	36207200	ID=Msa1056990-mRNA-1:cds;Parent=Msa1056990-mRNA-1
chr7_2	CDS	36206746	36206852	36206746	ID=Msa1056990-mRNA-1:cds;Parent=Msa1056990-mRNA-1
chr7_2	CDS	36206000	36206101	36206000	ID=Msa1056990-mRNA-1:cds;Parent=Msa1056990-mRNA-1
chr7_2	CDS	36205664	36205849	36205664	ID=Msa1056990-mRNA-1:cds;Parent=Msa1056990-mRNA-1

Gene Sequence

>Msa1056990

ATGAATAACGTTGCGTCGTTTGTAAGTCCTCTAACTGCTTCATCCCAATCTAGCACCACAGCACAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAATTTCCCTTCATGTTATCTCCAAGAGGATTGGGTTATTTCCGGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAATTGTTTTTACAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGTCACAGGTTAACACCAAAGAAAGCATAGATTTCCTTCTTAGAAGTGAGATAATTCCACTATGCCTACGCAGCATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAAAAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAG

Protein sequence

>Msa1056990

MNNVASFVSPLTASSQSSTTAQSMASMERLVIELNNPDLREISLHVISKRIGLFPELAPLLWNSYGTIELFLQCVASHPDTKMSFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKSQVNTKESIDFLLRSEIIPLCLRSMEIGKELSKTVATFIIQKIMSDDDGLIYVCGKTFFCSSSSFEHGIGKCWQSAFTSIDQTSDSMLFSFVSTS*