AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1057010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1057010 MtrunA17_Chr7g0224601 89.216 306 31 1 1 304 1 306 0.0 536
Msa1057010 MtrunA17_Chr8g0392781 55.786 337 112 3 1 302 11 345 5.40e-120 348
Msa1057010 MtrunA17_Chr3g0099561 61.594 276 104 1 28 303 26 299 3.12e-117 339
Msa1057010 MtrunA17_Chr1g0177151 64.435 239 83 1 11 249 17 253 7.12e-108 314
Msa1057010 MtrunA17_Chr5g0444621 65.534 206 69 1 68 273 60 263 3.26e-86 259
Msa1057010 MtrunA17_Chr6g0477171 65.829 199 66 1 49 247 45 241 5.04e-84 253
Msa1057010 MtrunA17_Chr3g0083811 57.759 116 49 0 178 293 1 116 5.25e-38 130
Msa1057010 MtrunA17_Chr3g0083821 72.619 84 23 0 70 153 36 119 7.58e-37 128
Msa1057010 MtrunA17_Chr5g0444631 84.615 52 8 0 102 153 4 55 2.57e-25 95.9
Msa1057010 MtrunA17_Chr6g0477181 67.347 49 16 0 1 49 11 59 4.12e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1057010 AT3G20800.1 59.786 281 111 1 22 302 33 311 1.11e-112 328
Msa1057010 AT5G12980.1 53.309 272 125 1 22 293 29 298 1.36e-98 293
Msa1057010 AT2G32550.3 35.827 254 135 5 54 290 39 281 8.46e-39 138
Msa1057010 AT2G32550.2 34.815 270 164 5 31 290 53 320 1.15e-38 139
Msa1057010 AT2G32550.1 38.000 200 119 3 94 290 29 226 4.03e-36 129

Find 56 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCCAATTTGAGCATTTA+AGG 0.127092 7_2:-36303987 Msa1057010:CDS
CAGAACTTGCACCTTTATTA+TGG 0.191101 7_2:-36305451 Msa1057010:CDS
CAAGCCTTAAATGCTCAAAT+TGG 0.232859 7_2:+36303983 None:intergenic
AAGGAAATTTATGCTTTCTT+TGG 0.258071 7_2:+36303276 None:intergenic
ATGAAGTTGCATGAAAATAT+TGG 0.267240 7_2:-36301462 Msa1057010:CDS
CATAATAAAGGTGCAAGTTC+TGG 0.267649 7_2:+36305452 None:intergenic
CCTTTATTATGGAATTCTTA+TGG 0.279542 7_2:-36305440 Msa1057010:CDS
AACTCGAGTGTGCAATGTTT+TGG 0.286056 7_2:-36304648 Msa1057010:CDS
GATAGAGAAACTAACAGTTT+TGG 0.317936 7_2:+36303195 None:intergenic
TGAAGTTGCATGAAAATATT+GGG 0.343625 7_2:-36301461 Msa1057010:CDS
GGGCTTGCAATGCATTAAAA+AGG 0.353362 7_2:-36302754 Msa1057010:CDS
ATTCCCTCCACCTGGTACTA+AGG 0.362304 7_2:+36301425 None:intergenic
CCATAAGAATTCCATAATAA+AGG 0.371929 7_2:+36305440 None:intergenic
AACTCAACAATCCTGATCTC+AGG 0.384176 7_2:-36307022 Msa1057010:CDS
TTTGTGTTGTGGTGCTAGAT+TGG 0.396232 7_2:+36307075 None:intergenic
CTTGCTAGTCTTGGAGTCAT+TGG 0.399485 7_2:-36303964 Msa1057010:CDS
CATTTAAGGCTTGCTAGTCT+TGG 0.414086 7_2:-36303973 Msa1057010:CDS
TTGTGTTGTGGTGCTAGATT+GGG 0.426883 7_2:+36307076 None:intergenic
GATTGGGATGAAGCAGTTAG+AGG 0.438610 7_2:+36307092 None:intergenic
TCGCTTGTCGTTCGAAGGAA+TGG 0.440010 7_2:+36304012 None:intergenic
TTCAATAACAAGGCGTTCCA+TGG 0.458343 7_2:+36307043 None:intergenic
TGCCTACGCAGCATGGAAAT+CGG 0.460606 7_2:-36303229 Msa1057010:CDS
AAAATTATGTCAGATGATGA+TGG 0.481246 7_2:-36303016 Msa1057010:CDS
AGATTCAACAGCGGAATAGT+AGG 0.487502 7_2:+36304686 None:intergenic
GGATGCCATGCTTTGTGTTG+TGG 0.492859 7_2:+36307064 None:intergenic
AAGCCTTAAATGCTCAAATT+GGG 0.502413 7_2:+36303984 None:intergenic
GATGGTTTGATTTATGTTTG+TGG 0.502440 7_2:-36302998 Msa1057010:CDS
TGAAAATATTGGGGTGAACC+AGG 0.503360 7_2:-36301451 Msa1057010:CDS
AAGATGAAACAACTTGGAGC+TGG 0.506447 7_2:-36301488 Msa1057010:CDS
AACACAAAGCATGGCATCCA+TGG 0.525100 7_2:-36307060 Msa1057010:CDS
TCTTGGAGTCATTGGTGCAT+TGG 0.530074 7_2:-36303956 Msa1057010:CDS
CACCTGGTACTAAGGGAACC+TGG 0.533033 7_2:+36301433 None:intergenic
GAATTATCTCACTTCTAAGA+AGG 0.538844 7_2:+36303257 None:intergenic
TCCACTATGCCTACGCAGCA+TGG 0.546502 7_2:-36303236 Msa1057010:CDS
CTAACTCGCTTGTCGTTCGA+AGG 0.550213 7_2:+36304007 None:intergenic
TTCAGGAAGATGAAACAACT+TGG 0.555820 7_2:-36301494 Msa1057010:intron
TGCTCTTCGTGTTCTCACCA+AGG 0.559038 7_2:-36306994 Msa1057010:intron
AACCAGGTTCCCTTAGTACC+AGG 0.560044 7_2:-36301435 Msa1057010:CDS
ACTCAACAATCCTGATCTCA+GGG 0.561365 7_2:-36307021 Msa1057010:CDS
TCCGCTGTTGAATCTTACTC+AGG 0.564161 7_2:-36304678 Msa1057010:CDS
GTTCCCTTAGTACCAGGTGG+AGG 0.568228 7_2:-36301429 Msa1057010:CDS
TTCCCTCCACCTGGTACTAA+GGG 0.571710 7_2:+36301426 None:intergenic
AGATGAAACAACTTGGAGCT+GGG 0.578633 7_2:-36301487 Msa1057010:CDS
TCCATGCTGCGTAGGCATAG+TGG 0.580220 7_2:+36303235 None:intergenic
TTCCCTTAGTACCAGGTGGA+GGG 0.586677 7_2:-36301428 Msa1057010:CDS
TGCCGATTTCCATGCTGCGT+AGG 0.604124 7_2:+36303227 None:intergenic
AGTCATTGGTGCATTGGTGA+AGG 0.613240 7_2:-36303950 Msa1057010:intron
TAGCACCACAACACAAAGCA+TGG 0.615888 7_2:-36307069 Msa1057010:CDS
TATCATTGATTCCCTCCACC+TGG 0.621495 7_2:+36301417 None:intergenic
AGTTTGATCAATTGATGTGA+AGG 0.628164 7_2:+36302908 None:intergenic
AACATGGTATTGGAAAGTGT+TGG 0.637520 7_2:-36302938 Msa1057010:CDS
GATTGTTGAGTTCAATAACA+AGG 0.670356 7_2:+36307033 None:intergenic
GAAGTTGCATGAAAATATTG+GGG 0.686036 7_2:-36301460 Msa1057010:CDS
CAGGTTCCCTTAGTACCAGG+TGG 0.694292 7_2:-36301432 Msa1057010:CDS
TGAGACAAAAGAGAATAACA+TGG 0.703854 7_2:+36302878 None:intergenic
GCCTGAGTAAGATTCAACAG+CGG 0.773865 7_2:+36304677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTTGTTTTTATTTT+TGG - chr7_2:36301753-36301772 Msa1057010:intron 10.0%
!!! ATTTTCTTGTTTTTATTTTT+GGG - chr7_2:36301754-36301773 Msa1057010:intron 10.0%
!!! AAAAAATTAACTTGAATAAT+TGG - chr7_2:36302219-36302238 Msa1057010:intron 10.0%
!! TGATTAACATATATTAAAAT+GGG + chr7_2:36302874-36302893 None:intergenic 10.0%
!! ATGATTAACATATATTAAAA+TGG + chr7_2:36302875-36302894 None:intergenic 10.0%
!! TATGTTAATCATTATTAATT+AGG - chr7_2:36302883-36302902 Msa1057010:CDS 10.0%
!!! TTTTAAAGTTACTAATAAAT+TGG + chr7_2:36304825-36304844 None:intergenic 10.0%
!!! ATTAGTAACTTTAAAATTTA+TGG - chr7_2:36304829-36304848 Msa1057010:intron 10.0%
!!! ATTATTTTTATAATGTTCTT+AGG - chr7_2:36304925-36304944 Msa1057010:intron 10.0%
!!! TTATTTTTATAATGTTCTTA+GGG - chr7_2:36304926-36304945 Msa1057010:intron 10.0%
!! GAAATTATTATAATTAACAA+AGG + chr7_2:36305210-36305229 None:intergenic 10.0%
!!! TGTATAAATTTTAATATTTC+TGG - chr7_2:36306292-36306311 Msa1057010:intron 10.0%
!! ACATTAATATAAATACAATA+TGG + chr7_2:36306320-36306339 None:intergenic 10.0%
!!! TTTTTATTTTTGGGTTTTTT+TGG - chr7_2:36301763-36301782 Msa1057010:intron 15.0%
!!! TTTTATTTTTGGGTTTTTTT+GGG - chr7_2:36301764-36301783 Msa1057010:intron 15.0%
!!! AATGTCTTTATATGATTTTT+TGG - chr7_2:36302694-36302713 Msa1057010:intron 15.0%
!!! TACTATTGAAATATTTTTAC+AGG - chr7_2:36303121-36303140 Msa1057010:intron 15.0%
!! CAAAAGTAAAAAAAAAAACA+AGG + chr7_2:36303409-36303428 None:intergenic 15.0%
!! TTGAAAACATAAACATAAAT+TGG + chr7_2:36303483-36303502 None:intergenic 15.0%
!!! TTGATTTTCAAGTATTTTAT+TGG + chr7_2:36303991-36304010 None:intergenic 15.0%
!!! CTTGATGTTAATAATTTTTA+TGG - chr7_2:36304650-36304669 Msa1057010:CDS 15.0%
!! AAAATACATATTAGGAATTT+GGG - chr7_2:36305049-36305068 Msa1057010:intron 15.0%
!!! AGATTCTTTAAAAAAATAAG+TGG + chr7_2:36305137-36305156 None:intergenic 15.0%
!! TAACAAAGGAAAAATAAATA+TGG + chr7_2:36305196-36305215 None:intergenic 15.0%
!! AATAAATTGGTAAAACAATA+AGG + chr7_2:36305368-36305387 None:intergenic 15.0%
!!! TTATTGATGATGTAATTTTT+TGG + chr7_2:36306136-36306155 None:intergenic 15.0%
!! ATCTTATATCTCATAATAAT+AGG + chr7_2:36306428-36306447 None:intergenic 15.0%
!! TATTATTATGAGATATAAGA+TGG - chr7_2:36306427-36306446 Msa1057010:intron 15.0%
!!! ATATTGTATTTTATAACCTT+AGG - chr7_2:36306535-36306554 Msa1057010:intron 15.0%
!!! TGCATTTTTAATATCTTTCA+TGG - chr7_2:36301591-36301610 Msa1057010:intron 20.0%
!!! GCATTTTTAATATCTTTCAT+GGG - chr7_2:36301592-36301611 Msa1057010:intron 20.0%
!!! TTTATTTTTGGGTTTTTTTG+GGG - chr7_2:36301765-36301784 Msa1057010:intron 20.0%
!!! GAAGATTTGTTTCAAATTTA+AGG - chr7_2:36301901-36301920 Msa1057010:intron 20.0%
!!! TTTGGATAACTATGATTTTT+TGG - chr7_2:36302712-36302731 Msa1057010:CDS 20.0%
!!! AGAAAATGAGAATTTTCATT+TGG - chr7_2:36302800-36302819 Msa1057010:intron 20.0%
!!! GGTGAGAATAATATTTTATT+AGG - chr7_2:36302904-36302923 Msa1057010:CDS 20.0%
!!! TAATATTTTATTAGGTGCTA+TGG - chr7_2:36302912-36302931 Msa1057010:CDS 20.0%
!!! TTTCATTTTTTAAGTTTCAG+AGG - chr7_2:36303051-36303070 Msa1057010:intron 20.0%
!!! TCTAAGAGTATTATAAACAA+GGG + chr7_2:36303223-36303242 None:intergenic 20.0%
!! GAAAAAAGTTATTATGCATT+TGG - chr7_2:36303315-36303334 Msa1057010:intron 20.0%
!!! TTTTTTTAAAATTGTCCAAG+AGG - chr7_2:36303618-36303637 Msa1057010:intron 20.0%
!! GTTTAATATTGTAACATCAA+TGG - chr7_2:36303660-36303679 Msa1057010:intron 20.0%
!! GAAAATCAATCATGTTAAAA+CGG - chr7_2:36304002-36304021 Msa1057010:CDS 20.0%
!! AGGAATGGATAAAAATATAA+AGG + chr7_2:36304514-36304533 None:intergenic 20.0%
!! ACTCATAACAAAAAAAGAAA+AGG - chr7_2:36304677-36304696 Msa1057010:CDS 20.0%
!!! AGATGGTTTTTAAAATAACT+AGG + chr7_2:36304861-36304880 None:intergenic 20.0%
!!! ATTCCTAATATGTATTTTCA+AGG + chr7_2:36305047-36305066 None:intergenic 20.0%
!! GAAAATACATATTAGGAATT+TGG - chr7_2:36305048-36305067 Msa1057010:intron 20.0%
!! AAGACTCTGTAAAAATAAAT+TGG + chr7_2:36305381-36305400 None:intergenic 20.0%
!! TTGTTTATATGAATTTGACT+TGG - chr7_2:36305401-36305420 Msa1057010:intron 20.0%
!! ATATTAGTAACATAAGTGAA+TGG + chr7_2:36305453-36305472 None:intergenic 20.0%
!! AAAATCTTTCATATTAACAC+AGG - chr7_2:36305763-36305782 Msa1057010:intron 20.0%
!! AAATCTTTCATATTAACACA+GGG - chr7_2:36305764-36305783 Msa1057010:intron 20.0%
!! GTATGATAAACAAATTCAAT+AGG + chr7_2:36305945-36305964 None:intergenic 20.0%
!! ACAAATGTGAAAATAACTAT+TGG - chr7_2:36305965-36305984 Msa1057010:intron 20.0%
!!! TTTGTTACTCAACATTTTAA+TGG - chr7_2:36305988-36306007 Msa1057010:intron 20.0%
!!! TAAATATGATTCCTTTTTGT+TGG + chr7_2:36306084-36306103 None:intergenic 20.0%
!!! TTTTTCTTGTTTTAAAGCTA+AGG - chr7_2:36306666-36306685 Msa1057010:intron 20.0%
!!! ATATTTTCACAAAGTAAATG+AGG - chr7_2:36306798-36306817 Msa1057010:intron 20.0%
!!! AATATTTTCACACTCTAATT+AGG - chr7_2:36306912-36306931 Msa1057010:intron 20.0%
!!! CAAATACTCAATTACAATTT+TGG - chr7_2:36306983-36307002 Msa1057010:intron 20.0%
!! GTATCAAAACAATATCATAA+AGG + chr7_2:36307023-36307042 None:intergenic 20.0%
! ATGCACAAAAAAAAGTAGAT+TGG + chr7_2:36301576-36301595 None:intergenic 25.0%
! TGTTACAAAATTGCATTAGT+TGG - chr7_2:36301967-36301986 Msa1057010:intron 25.0%
!! TTGTGTAATTCTTTATTTCG+TGG - chr7_2:36302021-36302040 Msa1057010:intron 25.0%
!! TGTGTAATTCTTTATTTCGT+GGG - chr7_2:36302022-36302041 Msa1057010:intron 25.0%
! TTATGCTTCATAGATTCATA+GGG + chr7_2:36302071-36302090 None:intergenic 25.0%
! TTTATGCTTCATAGATTCAT+AGG + chr7_2:36302072-36302091 None:intergenic 25.0%
! TGAATCTATGAAGCATAAAA+AGG - chr7_2:36302073-36302092 Msa1057010:intron 25.0%
! TAAGAAAGAGATGATTAGAA+AGG - chr7_2:36302098-36302117 Msa1057010:intron 25.0%
! GTAAGAATGTGATAGTTAAT+AGG - chr7_2:36302138-36302157 Msa1057010:intron 25.0%
! GATAGTTAATAGGATGAAAT+AGG - chr7_2:36302148-36302167 Msa1057010:intron 25.0%
! TTCTATCATAAAAGTCAGAT+TGG + chr7_2:36302266-36302285 None:intergenic 25.0%
!! GATCTAGATTTTATGACAAA+TGG + chr7_2:36302395-36302414 None:intergenic 25.0%
!! GTTCAAATATTTGTTGAGAA+AGG + chr7_2:36302609-36302628 None:intergenic 25.0%
!!! TTTTTTAAGTTTCAGAGGAT+TGG - chr7_2:36303056-36303075 Msa1057010:intron 25.0%
!!! TTTTTAAGTTTCAGAGGATT+GGG - chr7_2:36303057-36303076 Msa1057010:intron 25.0%
! CCATAAGAATTCCATAATAA+AGG + chr7_2:36303101-36303120 None:intergenic 25.0%
! CCTTTATTATGGAATTCTTA+TGG - chr7_2:36303098-36303117 Msa1057010:intron 25.0%
!!! CTCTAAGAGTATTATAAACA+AGG + chr7_2:36303224-36303243 None:intergenic 25.0%
!! AGATTGATCATTTGTTACTA+AGG - chr7_2:36303242-36303261 Msa1057010:CDS 25.0%
!! TGTATGTGTCTTAATTTTAG+TGG - chr7_2:36303289-36303308 Msa1057010:CDS 25.0%
! AAATTGGTGAAAGAATGAAA+CGG + chr7_2:36303467-36303486 None:intergenic 25.0%
! ACAAAAGAGACATGATTATA+AGG - chr7_2:36303551-36303570 Msa1057010:intron 25.0%
! CAAAAGAGACATGATTATAA+GGG - chr7_2:36303552-36303571 Msa1057010:intron 25.0%
!! GATATATTGAAGTTATTTCC+TGG + chr7_2:36303833-36303852 None:intergenic 25.0%
!! GAAATGACATTTTTGTATCA+GGG + chr7_2:36304131-36304150 None:intergenic 25.0%
!! AGAAATGACATTTTTGTATC+AGG + chr7_2:36304132-36304151 None:intergenic 25.0%
!! ACAAAAATGTCATTTCTCAA+TGG - chr7_2:36304135-36304154 Msa1057010:intron 25.0%
!! AGAAATCTAGAACAATTAAG+AGG + chr7_2:36304180-36304199 None:intergenic 25.0%
!! TTTTTATTGTGAGTGTGATA+TGG - chr7_2:36304272-36304291 Msa1057010:intron 25.0%
! AGCTGCAAATAATTAAGAAA+TGG + chr7_2:36304485-36304504 None:intergenic 25.0%
! TTGTGATGTGAAACTATATT+TGG - chr7_2:36304732-36304751 Msa1057010:intron 25.0%
!! CAATTTTCGTAATAAGTAGA+TGG + chr7_2:36304878-36304897 None:intergenic 25.0%
! GTTCCTTGAAAATACATATT+AGG - chr7_2:36305041-36305060 Msa1057010:intron 25.0%
! AAGGAAATTTATGCTTTCTT+TGG + chr7_2:36305265-36305284 None:intergenic 25.0%
! GAATGGCAAAAAAATTTAGA+AGG + chr7_2:36305436-36305455 None:intergenic 25.0%
! AAAATTATGTCAGATGATGA+TGG - chr7_2:36305522-36305541 Msa1057010:intron 25.0%
!! TTTATACAATTTTTGCTAGC+AGG + chr7_2:36306280-36306299 None:intergenic 25.0%
! TTATAACCTTAGGATACTAT+CGG - chr7_2:36306545-36306564 Msa1057010:intron 25.0%
! TGAGGTTTAAATTGTTTAAG+TGG - chr7_2:36306816-36306835 Msa1057010:intron 25.0%
! TTTAAATTGTTTAAGTGGTG+AGG - chr7_2:36306821-36306840 Msa1057010:intron 25.0%
! TTTGTGTTCTTAAGTTTGAA+GGG + chr7_2:36306883-36306902 None:intergenic 25.0%
!! TTTTGTGTTCTTAAGTTTGA+AGG + chr7_2:36306884-36306903 None:intergenic 25.0%
!!! GATATTGTTTTGATACATTC+AGG - chr7_2:36307027-36307046 Msa1057010:CDS 25.0%
! ATGAAGTTGCATGAAAATAT+TGG - chr7_2:36307076-36307095 Msa1057010:CDS 25.0%
! TGAAGTTGCATGAAAATATT+GGG - chr7_2:36307077-36307096 Msa1057010:CDS 25.0%
GATTGTTGAGTTCAATAACA+AGG + chr7_2:36301508-36301527 None:intergenic 30.0%
AAGTAGATTGGTAAAAACCT+TGG + chr7_2:36301564-36301583 None:intergenic 30.0%
GTTCATTCTTTAGTGTATCA+TGG - chr7_2:36301826-36301845 Msa1057010:intron 30.0%
ATATGACTAGAATCTCATTC+TGG + chr7_2:36302742-36302761 None:intergenic 30.0%
ACATGATTATAAGGGAGAAT+TGG - chr7_2:36303560-36303579 Msa1057010:intron 30.0%
AGGGAGAATTGGAAAATAAA+AGG - chr7_2:36303571-36303590 Msa1057010:intron 30.0%
! CAGATAGTGATAATTTTTCC+AGG - chr7_2:36303812-36303831 Msa1057010:intron 30.0%
TCATGGATTTGAATTCTCTA+TGG - chr7_2:36304371-36304390 Msa1057010:intron 30.0%
AAGCCTTAAATGCTCAAATT+GGG + chr7_2:36304557-36304576 None:intergenic 30.0%
!! CAGCAAAAAACTACTTTTAG+AGG + chr7_2:36304964-36304983 None:intergenic 30.0%
AAACTTACCAAGATCACAAT+AGG + chr7_2:36305013-36305032 None:intergenic 30.0%
TGACTATCATGTACAAAAGA+AGG + chr7_2:36305232-36305251 None:intergenic 30.0%
! GAATTATCTCACTTCTAAGA+AGG + chr7_2:36305284-36305303 None:intergenic 30.0%
! GATAGAGAAACTAACAGTTT+TGG + chr7_2:36305346-36305365 None:intergenic 30.0%
CAGAGATGATAACTTTGATT+AGG + chr7_2:36305478-36305497 None:intergenic 30.0%
! GATGGTTTGATTTATGTTTG+TGG - chr7_2:36305540-36305559 Msa1057010:intron 30.0%
!!! AGTAGTTCAAGTTTTGAACA+TGG - chr7_2:36305584-36305603 Msa1057010:intron 30.0%
!!! TCAAGTTTTGAACATGGTAT+TGG - chr7_2:36305590-36305609 Msa1057010:intron 30.0%
AGTTTGATCAATTGATGTGA+AGG + chr7_2:36305633-36305652 None:intergenic 30.0%
TGAGACAAAAGAGAATAACA+TGG + chr7_2:36305663-36305682 None:intergenic 30.0%
TAATTTCCGATAGTATCCTA+AGG + chr7_2:36306554-36306573 None:intergenic 30.0%
GAAATTAAAGAAGTCTAGTG+TGG - chr7_2:36306567-36306586 Msa1057010:intron 30.0%
GAGATAACTCTCTTGAAAAA+TGG + chr7_2:36306705-36306724 None:intergenic 30.0%
!!! AAGTGAGACTTTTGAAATAG+CGG + chr7_2:36306727-36306746 None:intergenic 30.0%
GAAGTTGCATGAAAATATTG+GGG - chr7_2:36307078-36307097 Msa1057010:CDS 30.0%
TCTCAAGAAATCCAGATCTT+TGG - chr7_2:36301617-36301636 Msa1057010:intron 35.0%
TTTGTGATATGCAAGTGAGA+TGG + chr7_2:36302419-36302438 None:intergenic 35.0%
CGCTTTACATGTTCTCTTAA+AGG - chr7_2:36302473-36302492 Msa1057010:intron 35.0%
TAGATAATTCCTCGAAGAGT+TGG + chr7_2:36302567-36302586 None:intergenic 35.0%
TGTGACTAAGTCTACTGAAA+GGG + chr7_2:36302659-36302678 None:intergenic 35.0%
ATGTGACTAAGTCTACTGAA+AGG + chr7_2:36302660-36302679 None:intergenic 35.0%
! CATAATAAAGGTGCAAGTTC+TGG + chr7_2:36303089-36303108 None:intergenic 35.0%
CAGAACTTGCACCTTTATTA+TGG - chr7_2:36303087-36303106 Msa1057010:intron 35.0%
AAAAACACAACAGTAGTGGT+TGG - chr7_2:36303340-36303359 Msa1057010:intron 35.0%
TAAGTTCAAATCTCCTCAAG+CGG - chr7_2:36303685-36303704 Msa1057010:intron 35.0%
!!! CAATGTTTTGGAACTACTTC+AGG - chr7_2:36303902-36303921 Msa1057010:intron 35.0%
! CATGTTTTCTTTACAGTGTG+TGG - chr7_2:36304098-36304117 Msa1057010:intron 35.0%
AGTGCTATGAATAAGAGTCA+TGG - chr7_2:36304354-36304373 Msa1057010:intron 35.0%
GGTTAGATGTAGTCAATTGT+AGG - chr7_2:36304396-36304415 Msa1057010:intron 35.0%
TAGCCCAATTTGAGCATTTA+AGG - chr7_2:36304551-36304570 Msa1057010:intron 35.0%
CAAGCCTTAAATGCTCAAAT+TGG + chr7_2:36304558-36304577 None:intergenic 35.0%
TTGCAATCCTATTGTGATCT+TGG - chr7_2:36305003-36305022 Msa1057010:intron 35.0%
! CTTTTGTACATGATAGTCAC+AGG - chr7_2:36305233-36305252 Msa1057010:intron 35.0%
ATCAAAGTTATCATCTCTGC+AGG - chr7_2:36305479-36305498 Msa1057010:intron 35.0%
! AACATGGTATTGGAAAGTGT+TGG - chr7_2:36305600-36305619 Msa1057010:intron 35.0%
TGAAACTTCTTAACCAACCT+AGG + chr7_2:36305690-36305709 None:intergenic 35.0%
! TTGACAGTTTTCAGCATGTT+TGG + chr7_2:36305816-36305835 None:intergenic 35.0%
AGCTACCTCTTTAACAAGTT+TGG - chr7_2:36306026-36306045 Msa1057010:intron 35.0%
!! TGACACCAAACTTGTTAAAG+AGG + chr7_2:36306034-36306053 None:intergenic 35.0%
AAAGTGAGTGTCCAACAAAA+AGG - chr7_2:36306070-36306089 Msa1057010:intron 35.0%
TTCAGGAAGATGAAACAACT+TGG - chr7_2:36307044-36307063 Msa1057010:CDS 35.0%
! TTGTGTTGTGGTGCTAGATT+GGG + chr7_2:36301465-36301484 None:intergenic 40.0%
! TTTGTGTTGTGGTGCTAGAT+TGG + chr7_2:36301466-36301485 None:intergenic 40.0%
! TTCAATAACAAGGCGTTCCA+TGG + chr7_2:36301498-36301517 None:intergenic 40.0%
AACTCAACAATCCTGATCTC+AGG - chr7_2:36301516-36301535 Msa1057010:intron 40.0%
ACTCAACAATCCTGATCTCA+GGG - chr7_2:36301517-36301536 Msa1057010:intron 40.0%
TCACAACTTCTCCAAAGATC+TGG + chr7_2:36301631-36301650 None:intergenic 40.0%
GGATTACATGTGTGTGTTCA+CGG + chr7_2:36302546-36302565 None:intergenic 40.0%
ACATGTAATCCAACTCTTCG+AGG - chr7_2:36302555-36302574 Msa1057010:intron 40.0%
GTGACTAAGTCTACTGAAAG+GGG + chr7_2:36302658-36302677 None:intergenic 40.0%
!!! TGTCATTTTACAACCGCTTG+AGG + chr7_2:36303701-36303720 None:intergenic 40.0%
AGATTCAACAGCGGAATAGT+AGG + chr7_2:36303855-36303874 None:intergenic 40.0%
! AACTCGAGTGTGCAATGTTT+TGG - chr7_2:36303890-36303909 Msa1057010:intron 40.0%
!! ACATGAGAGAAAAGTGCTAG+AGG + chr7_2:36304083-36304102 None:intergenic 40.0%
GGATTTGAATTCTCTATGGC+TGG - chr7_2:36304375-36304394 Msa1057010:intron 40.0%
!! CATTTAAGGCTTGCTAGTCT+TGG - chr7_2:36304565-36304584 Msa1057010:intron 40.0%
! CTCTTTTGTCTCAACATCCT+AGG - chr7_2:36305670-36305689 Msa1057010:intron 40.0%
TTTGTCTCAACATCCTAGGT+TGG - chr7_2:36305674-36305693 Msa1057010:intron 40.0%
GGGCTTGCAATGCATTAAAA+AGG - chr7_2:36305784-36305803 Msa1057010:intron 40.0%
!! CAAGTTTGGTGTCACACTTA+TGG - chr7_2:36306040-36306059 Msa1057010:intron 40.0%
TAAAGAAGTCTAGTGTGGAC+AGG - chr7_2:36306572-36306591 Msa1057010:intron 40.0%
!! GGTGAGGATTTTGAGTCTAT+TGG - chr7_2:36306837-36306856 Msa1057010:intron 40.0%
TTCTTAAGTTTGAAGGGTCG+TGG + chr7_2:36306877-36306896 None:intergenic 40.0%
AAGATGAAACAACTTGGAGC+TGG - chr7_2:36307050-36307069 Msa1057010:CDS 40.0%
AGATGAAACAACTTGGAGCT+GGG - chr7_2:36307051-36307070 Msa1057010:CDS 40.0%
TGAAAATATTGGGGTGAACC+AGG - chr7_2:36307087-36307106 Msa1057010:CDS 40.0%
GATTGGGATGAAGCAGTTAG+AGG + chr7_2:36301449-36301468 None:intergenic 45.0%
TAGCACCACAACACAAAGCA+TGG - chr7_2:36301469-36301488 Msa1057010:CDS 45.0%
AACACAAAGCATGGCATCCA+TGG - chr7_2:36301478-36301497 Msa1057010:CDS 45.0%
!! AGAGCATTTTCCCTGAGATC+AGG + chr7_2:36301530-36301549 None:intergenic 45.0%
!! CTGCACTGTCACACTAGTTT+TGG - chr7_2:36301718-36301737 Msa1057010:intron 45.0%
GTTCCTTGCTTTACTACCTC+TGG - chr7_2:36303187-36303206 Msa1057010:intron 45.0%
TTGCCAGAGGTAGTAAAGCA+AGG + chr7_2:36303193-36303212 None:intergenic 45.0%
GGCGAAAAACACAACAGTAG+TGG - chr7_2:36303336-36303355 Msa1057010:intron 45.0%
TCCGCTGTTGAATCTTACTC+AGG - chr7_2:36303860-36303879 Msa1057010:intron 45.0%
GCCTGAGTAAGATTCAACAG+CGG + chr7_2:36303864-36303883 None:intergenic 45.0%
!! CTTGCTAGTCTTGGAGTCAT+TGG - chr7_2:36304574-36304593 Msa1057010:intron 45.0%
TCTTGGAGTCATTGGTGCAT+TGG - chr7_2:36304582-36304601 Msa1057010:intron 45.0%
! AGTCATTGGTGCATTGGTGA+AGG - chr7_2:36304588-36304607 Msa1057010:intron 45.0%
!! CACAAGAAGTACTTACGCGA+AGG + chr7_2:36305851-36305870 None:intergenic 45.0%
GGATGCCATGCTTTGTGTTG+TGG + chr7_2:36301477-36301496 None:intergenic 50.0%
TGCTCTTCGTGTTCTCACCA+AGG - chr7_2:36301544-36301563 Msa1057010:intron 50.0%
CAAGGGAAACAGTTTGCCAG+AGG + chr7_2:36303206-36303225 None:intergenic 50.0%
TCGCTTGTCGTTCGAAGGAA+TGG + chr7_2:36304529-36304548 None:intergenic 50.0%
CTAACTCGCTTGTCGTTCGA+AGG + chr7_2:36304534-36304553 None:intergenic 50.0%
TGCCTACGCAGCATGGAAAT+CGG - chr7_2:36305309-36305328 Msa1057010:intron 50.0%
AACCAGGTTCCCTTAGTACC+AGG - chr7_2:36307103-36307122 Msa1057010:CDS 50.0%
TTCCCTTAGTACCAGGTGGA+GGG - chr7_2:36307110-36307129 Msa1057010:CDS 50.0%
TTCCCTCCACCTGGTACTAA+GGG + chr7_2:36307115-36307134 None:intergenic 50.0%
ATTCCCTCCACCTGGTACTA+AGG + chr7_2:36307116-36307135 None:intergenic 50.0%
TCCAAGAGGCTGTAGCTCAG+TGG - chr7_2:36303632-36303651 Msa1057010:intron 55.0%
ACCACTGAGCTACAGCCTCT+TGG + chr7_2:36303636-36303655 None:intergenic 55.0%
TCCACTATGCCTACGCAGCA+TGG - chr7_2:36305302-36305321 Msa1057010:intron 55.0%
TCCATGCTGCGTAGGCATAG+TGG + chr7_2:36305306-36305325 None:intergenic 55.0%
!! TGCCGATTTCCATGCTGCGT+AGG + chr7_2:36305314-36305333 None:intergenic 55.0%
CACCTGGTACTAAGGGAACC+TGG + chr7_2:36307108-36307127 None:intergenic 55.0%
CAGGTTCCCTTAGTACCAGG+TGG - chr7_2:36307106-36307125 Msa1057010:CDS 55.0%
GTTCCCTTAGTACCAGGTGG+AGG - chr7_2:36307109-36307128 Msa1057010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 36301419 36307141 36301419 ID=Msa1057010;Name=Msa1057010
chr7_2 mRNA 36301419 36307141 36301419 ID=Msa1057010-mRNA-1;Parent=Msa1057010;Name=Msa1057010-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0|0|0.88|1|1|9|0|304
chr7_2 exon 36306995 36307141 36306995 ID=Msa1057010-mRNA-1:exon:7074;Parent=Msa1057010-mRNA-1
chr7_2 exon 36305418 36305489 36305418 ID=Msa1057010-mRNA-1:exon:7073;Parent=Msa1057010-mRNA-1
chr7_2 exon 36304637 36304726 36304637 ID=Msa1057010-mRNA-1:exon:7072;Parent=Msa1057010-mRNA-1
chr7_2 exon 36304404 36304446 36304404 ID=Msa1057010-mRNA-1:exon:7071;Parent=Msa1057010-mRNA-1
chr7_2 exon 36303951 36304057 36303951 ID=Msa1057010-mRNA-1:exon:7070;Parent=Msa1057010-mRNA-1
chr7_2 exon 36303210 36303311 36303210 ID=Msa1057010-mRNA-1:exon:7069;Parent=Msa1057010-mRNA-1
chr7_2 exon 36302869 36303059 36302869 ID=Msa1057010-mRNA-1:exon:7068;Parent=Msa1057010-mRNA-1
chr7_2 exon 36302706 36302775 36302706 ID=Msa1057010-mRNA-1:exon:7067;Parent=Msa1057010-mRNA-1
chr7_2 exon 36301419 36301511 36301419 ID=Msa1057010-mRNA-1:exon:7066;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36306995 36307141 36306995 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36305418 36305489 36305418 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36304637 36304726 36304637 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36304404 36304446 36304404 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36303951 36304057 36303951 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36303210 36303311 36303210 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36302869 36303059 36302869 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36302706 36302775 36302706 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
chr7_2 CDS 36301419 36301511 36301419 ID=Msa1057010-mRNA-1:cds;Parent=Msa1057010-mRNA-1
Gene Sequence

>Msa1057010

ATGAATAACGTTGCGTCGTTTGTAAGTCCTCTAACTGCTTCATCCCAATCTAGCACCACAACACAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAAATGCTCTTCGTGTTCTCACCAAGAGGATTGGGTTATTTCCAGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAAATATTTTTACAGGAAATAACTTCAATATATCCTACTATTCCGCTGTTGAATCTTACTCAGGCACAATCAACTCGAGTGTGCAATGTTTTGGAACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCGAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGTCACAGGCTAACACCAAAGAAAGCATAAATTTCCTTCTTAGAAGTGAGATAATTCCACTATGCCTACGCAGCATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGCTGAAAACTGTCAATTTCATCAATTGCCTTCGCGAAGATGAAACAACTTGGAGCTGGGTAATGAAGTTGCATGAAAATATTGGGGTGAACCAGGTTCCCTTAGTACCAGGTGGAGGGAATCAATGA
Protein sequence

>Msa1057010

MNNVASFVSPLTASSQSSTTTQSMASMERLVIELNNPDLRENALRVLTKRIGLFPELAPLLWNSYGTIEIFLQEITSIYPTIPLLNLTQAQSTRVCNVLELLQCVASHPDTKMSFLNANMPLYFYPFLRTTSELAQFEHLRLASLGVIGALVKSQANTKESINFLLRSEIIPLCLRSMEIGKELSKTVATFIIQKIMSDDDGLIYVCGTAERFFAVVQVLNMVLESVGNQPSHQLIKLLIPCYSLLSQHPRACNALKRRLPNMLKTVNFINCLREDETTWSWVMKLHENIGVNQVPLVPGGGNQ*