Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057530 | XP_039684204.1 | 93.976 | 249 | 15 | 0 | 1 | 249 | 1 | 249 | 1.80e-172 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057530 | sp|Q1G3Q4|RITF1_ARATH | 41.961 | 255 | 126 | 5 | 11 | 248 | 6 | 255 | 4.14e-56 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057530 | A0A072V7G2 | 93.574 | 249 | 16 | 0 | 1 | 249 | 92 | 340 | 1.11e-172 | 488 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1057530 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057530 | MtrunA17_Chr7g0230511 | 94.309 | 246 | 14 | 0 | 4 | 249 | 2 | 247 | 8.15e-175 | 481 |
| Msa1057530 | MtrunA17_Chr2g0297251 | 43.154 | 241 | 114 | 6 | 11 | 248 | 37 | 257 | 2.30e-58 | 186 |
| Msa1057530 | MtrunA17_Chr4g0065041 | 41.296 | 247 | 133 | 4 | 11 | 248 | 8 | 251 | 6.14e-58 | 184 |
| Msa1057530 | MtrunA17_Chr4g0040071 | 33.333 | 240 | 112 | 5 | 11 | 248 | 15 | 208 | 2.41e-38 | 133 |
| Msa1057530 | MtrunA17_Chr5g0411151 | 33.745 | 243 | 115 | 5 | 8 | 248 | 32 | 230 | 3.79e-37 | 130 |
| Msa1057530 | MtrunA17_Chr5g0395181 | 43.284 | 134 | 74 | 2 | 11 | 142 | 21 | 154 | 8.60e-36 | 126 |
| Msa1057530 | MtrunA17_Chr1g0179781 | 32.099 | 243 | 116 | 8 | 9 | 248 | 5 | 201 | 4.23e-34 | 122 |
| Msa1057530 | MtrunA17_Chr8g0366581 | 43.077 | 130 | 72 | 2 | 8 | 135 | 30 | 159 | 4.25e-34 | 122 |
| Msa1057530 | MtrunA17_Chr7g0265291 | 42.754 | 138 | 74 | 3 | 9 | 141 | 5 | 142 | 9.78e-34 | 120 |
| Msa1057530 | MtrunA17_Chr2g0320521 | 28.063 | 253 | 145 | 9 | 9 | 249 | 5 | 232 | 1.53e-25 | 100 |
| Msa1057530 | MtrunA17_Chr4g0052451 | 53.571 | 84 | 32 | 1 | 61 | 137 | 10 | 93 | 3.27e-25 | 95.5 |
| Msa1057530 | MtrunA17_Chr4g0020811 | 37.333 | 150 | 78 | 5 | 9 | 142 | 5 | 154 | 1.07e-22 | 90.9 |
| Msa1057530 | MtrunA17_Chr2g0308401 | 36.667 | 150 | 79 | 5 | 9 | 142 | 3 | 152 | 3.23e-22 | 89.7 |
| Msa1057530 | MtrunA17_Chr2g0320561 | 34.483 | 145 | 84 | 4 | 10 | 143 | 4 | 148 | 4.85e-22 | 91.3 |
| Msa1057530 | MtrunA17_Chr8g0392151 | 29.655 | 145 | 79 | 3 | 13 | 135 | 15 | 158 | 6.82e-20 | 85.5 |
| Msa1057530 | MtrunA17_Chr4g0052461 | 49.123 | 57 | 29 | 0 | 8 | 64 | 19 | 75 | 1.77e-17 | 74.7 |
| Msa1057530 | MtrunA17_Chr2g0320551 | 33.333 | 138 | 81 | 4 | 10 | 136 | 4 | 141 | 1.77e-17 | 77.4 |
| Msa1057530 | MtrunA17_Chr1g0161601 | 47.561 | 82 | 41 | 2 | 7 | 88 | 44 | 123 | 1.33e-15 | 71.6 |
| Msa1057530 | MtrunA17_Chr5g0434331 | 31.884 | 138 | 80 | 6 | 11 | 140 | 43 | 174 | 4.02e-15 | 72.0 |
| Msa1057530 | MtrunA17_Chr8g0386511 | 30.345 | 145 | 91 | 5 | 49 | 185 | 4 | 146 | 2.90e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057530 | AT3G60670.1 | 54.656 | 247 | 96 | 7 | 11 | 249 | 7 | 245 | 6.64e-84 | 251 |
| Msa1057530 | AT2G12646.3 | 41.961 | 255 | 126 | 5 | 11 | 248 | 3 | 252 | 3.89e-57 | 183 |
| Msa1057530 | AT2G12646.1 | 41.961 | 255 | 126 | 5 | 11 | 248 | 6 | 255 | 4.21e-57 | 183 |
| Msa1057530 | AT2G12646.2 | 41.961 | 255 | 126 | 5 | 11 | 248 | 6 | 255 | 4.21e-57 | 183 |
| Msa1057530 | AT1G31040.1 | 41.004 | 239 | 125 | 4 | 11 | 248 | 19 | 242 | 2.23e-54 | 175 |
| Msa1057530 | AT1G21000.2 | 34.025 | 241 | 146 | 7 | 11 | 248 | 13 | 243 | 5.60e-36 | 128 |
| Msa1057530 | AT1G21000.1 | 34.025 | 241 | 146 | 7 | 11 | 248 | 16 | 246 | 6.24e-36 | 128 |
| Msa1057530 | AT1G32700.1 | 44.697 | 132 | 71 | 2 | 11 | 140 | 12 | 143 | 3.45e-34 | 122 |
| Msa1057530 | AT4G17900.1 | 31.837 | 245 | 114 | 8 | 8 | 248 | 31 | 226 | 9.68e-34 | 122 |
| Msa1057530 | AT4G17900.2 | 31.837 | 245 | 114 | 8 | 8 | 248 | 17 | 212 | 1.22e-33 | 121 |
| Msa1057530 | AT1G76590.1 | 33.610 | 241 | 144 | 9 | 11 | 248 | 18 | 245 | 6.56e-32 | 117 |
| Msa1057530 | AT2G01818.1 | 31.600 | 250 | 120 | 8 | 12 | 249 | 12 | 222 | 2.01e-31 | 115 |
| Msa1057530 | AT1G43000.1 | 31.818 | 242 | 131 | 6 | 9 | 248 | 7 | 216 | 9.21e-30 | 111 |
| Msa1057530 | AT1G43000.2 | 31.818 | 242 | 131 | 6 | 9 | 248 | 14 | 223 | 1.24e-29 | 111 |
| Msa1057530 | AT2G27930.1 | 40.000 | 140 | 72 | 3 | 11 | 138 | 4 | 143 | 6.04e-29 | 108 |
| Msa1057530 | AT2G27930.4 | 40.000 | 140 | 72 | 3 | 11 | 138 | 4 | 143 | 6.04e-29 | 108 |
| Msa1057530 | AT2G27930.3 | 40.876 | 137 | 69 | 3 | 11 | 135 | 4 | 140 | 7.52e-29 | 107 |
| Msa1057530 | AT2G27930.2 | 40.876 | 137 | 69 | 3 | 11 | 135 | 4 | 140 | 7.52e-29 | 107 |
| Msa1057530 | AT5G46710.3 | 38.406 | 138 | 82 | 3 | 8 | 142 | 9 | 146 | 2.26e-26 | 102 |
| Msa1057530 | AT5G46710.1 | 38.406 | 138 | 82 | 3 | 8 | 142 | 25 | 162 | 3.55e-26 | 102 |
| Msa1057530 | AT5G46710.2 | 39.695 | 131 | 76 | 3 | 8 | 135 | 25 | 155 | 5.98e-26 | 100 |
| Msa1057530 | AT1G32700.2 | 45.192 | 104 | 55 | 2 | 39 | 140 | 1 | 104 | 8.80e-25 | 97.1 |
| Msa1057530 | AT2G27930.5 | 43.529 | 85 | 38 | 1 | 61 | 135 | 59 | 143 | 5.04e-17 | 77.0 |
| Msa1057530 | AT2G27930.6 | 43.529 | 85 | 38 | 1 | 61 | 135 | 59 | 143 | 5.04e-17 | 77.0 |
| Msa1057530 | AT2G01818.2 | 42.308 | 78 | 38 | 2 | 66 | 136 | 6 | 83 | 7.76e-13 | 65.1 |
Find 52 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACATTTGGTTCACTATC+TGG | 0.237092 | 7_2:+39558054 | Msa1057530:CDS |
| GTAAGGGTCTTGAAGACTTC+TGG | 0.303743 | 7_2:-39557463 | None:intergenic |
| TGCCTCTCACAGACTCTTGC+AGG | 0.308178 | 7_2:+39556985 | Msa1057530:CDS |
| AACCGAACTTCATCCGGTTC+TGG | 0.328456 | 7_2:+39558174 | Msa1057530:CDS |
| GAGGAGCATCTCTTTGGAAT+TGG | 0.338342 | 7_2:-39557417 | None:intergenic |
| TTGCTTGAGGAGCATCTCTT+TGG | 0.338603 | 7_2:-39557423 | None:intergenic |
| TGACACCGGTTCTCTTCTTT+CGG | 0.344148 | 7_2:-39558257 | None:intergenic |
| AGTCACTTGGTGAAAACATT+TGG | 0.391874 | 7_2:+39558042 | Msa1057530:CDS |
| AGCCAAAGTGGAACAACATT+TGG | 0.404254 | 7_2:-39556836 | None:intergenic |
| TCTCGGAGAGTCTGATGAAT+AGG | 0.410323 | 7_2:+39558328 | Msa1057530:CDS |
| GGTTCAAACCGAACTTCATC+CGG | 0.422747 | 7_2:+39558168 | Msa1057530:CDS |
| GGCGATGTATCCACCAGAAC+CGG | 0.423649 | 7_2:-39558187 | None:intergenic |
| ATGCCACCATTATCTGATTC+TGG | 0.428827 | 7_2:+39558099 | Msa1057530:CDS |
| GAGAGAGAGCAGAATTTGTA+AGG | 0.431185 | 7_2:-39557480 | None:intergenic |
| CACCAAATGTTGTTCCACTT+TGG | 0.432537 | 7_2:+39556834 | Msa1057530:CDS |
| CACCAGAACCGGATGAAGTT+CGG | 0.442378 | 7_2:-39558176 | None:intergenic |
| CGGTAGTAGCGGTGCAAGCA+AGG | 0.453944 | 7_2:-39558227 | None:intergenic |
| GGATGAAGTTCGGTTTGAAC+CGG | 0.475769 | 7_2:-39558166 | None:intergenic |
| TCTAGTCCAGAATCAGATAA+TGG | 0.486066 | 7_2:-39558105 | None:intergenic |
| CTCGCCGGTGTCGGAAATCT+CGG | 0.497072 | 7_2:+39558311 | Msa1057530:CDS |
| GATGGTTCGAGAACCGAGTC+AGG | 0.499983 | 7_2:-39558144 | None:intergenic |
| GACTCGGTTCTCGAACCATC+CGG | 0.529624 | 7_2:+39558147 | Msa1057530:CDS |
| GTCTTGAAGACTTCTGGCAC+AGG | 0.531073 | 7_2:-39557457 | None:intergenic |
| TCCGACACCGGCGAGCATGC+AGG | 0.535651 | 7_2:-39558303 | None:intergenic |
| GTTGTCCGAAAGAAGAGAAC+CGG | 0.538631 | 7_2:+39558252 | Msa1057530:CDS |
| CTACAGTTCTACAGAACAAA+CGG | 0.540640 | 7_2:+39557366 | Msa1057530:intron |
| GTGTCGGCCTGCATGCTCGC+CGG | 0.542423 | 7_2:+39558296 | Msa1057530:CDS |
| CGGTCTAATGACACCTGACT+CGG | 0.553504 | 7_2:+39558131 | Msa1057530:CDS |
| AGCATCACTTGAAGCCAAAG+TGG | 0.554106 | 7_2:-39556848 | None:intergenic |
| CGAACTTCATCCGGTTCTGG+TGG | 0.562148 | 7_2:+39558177 | Msa1057530:CDS |
| ATTCTGCTCTCTCTCTTGCA+AGG | 0.568123 | 7_2:+39557488 | Msa1057530:CDS |
| TGCTTGCACCGCTACTACCG+AGG | 0.570706 | 7_2:+39558230 | Msa1057530:CDS |
| CGGAGAGTCTGATGAATAGG+AGG | 0.571731 | 7_2:+39558331 | Msa1057530:CDS |
| TCTCTTCTTTCGGACAACCT+CGG | 0.571880 | 7_2:-39558247 | None:intergenic |
| GGTAGTAGCGGTGCAAGCAA+GGG | 0.574594 | 7_2:-39558226 | None:intergenic |
| AGTCTGATGAATAGGAGGAA+AGG | 0.580615 | 7_2:+39558336 | Msa1057530:CDS |
| ATGCAGGCCGACACGGTGGT+CGG | 0.595664 | 7_2:-39558287 | None:intergenic |
| GAAGTTCGGTTTGAACCGGA+TGG | 0.598179 | 7_2:-39558162 | None:intergenic |
| GGTTCTGCAGATATTGCTTG+AGG | 0.599864 | 7_2:-39557436 | None:intergenic |
| AGAATCAGATAATGGTGGCA+TGG | 0.607517 | 7_2:-39558097 | None:intergenic |
| TCTGATTCTGGACTAGATGA+CGG | 0.614207 | 7_2:+39558111 | Msa1057530:CDS |
| GGCGAGCATGCAGGCCGACA+CGG | 0.620248 | 7_2:-39558294 | None:intergenic |
| CTCTCCGAGATTTCCGACAC+CGG | 0.623268 | 7_2:-39558315 | None:intergenic |
| TCGGACAACCTCGGTAGTAG+CGG | 0.624276 | 7_2:-39558238 | None:intergenic |
| AGAGAGAGCAGAATTTGTAA+GGG | 0.625118 | 7_2:-39557479 | None:intergenic |
| AAGAGTCTGTGAGAGGCATG+AGG | 0.626300 | 7_2:-39556980 | None:intergenic |
| TCACTTTCCGACCACCGTGT+CGG | 0.647068 | 7_2:+39558280 | Msa1057530:CDS |
| AACCTGCAAGAGTCTGTGAG+AGG | 0.669613 | 7_2:-39556987 | None:intergenic |
| AGTCCAGAATCAGATAATGG+TGG | 0.683117 | 7_2:-39558102 | None:intergenic |
| GAGCATGCAGGCCGACACGG+TGG | 0.741450 | 7_2:-39558291 | None:intergenic |
| TGGTCGGAAAGTGATGACAC+CGG | 0.742801 | 7_2:-39558271 | None:intergenic |
| GCATGAGGAGAAACACAGTG+AGG | 0.772523 | 7_2:-39556965 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTATATCAATAAAT+GGG | - | chr7_2:39556781-39556800 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTATATCAATAAA+TGG | - | chr7_2:39556782-39556801 | None:intergenic | 10.0% |
| !! | ATATATTAAACTATGTATAT+TGG | + | chr7_2:39557215-39557234 | Msa1057530:intron | 10.0% |
| !!! | TTTTTAGTATATCAATAAAT+GGG | - | chr7_2:39556781-39556800 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTATATCAATAAA+TGG | - | chr7_2:39556782-39556801 | None:intergenic | 10.0% |
| !! | ATATATTAAACTATGTATAT+TGG | + | chr7_2:39557215-39557234 | Msa1057530:intron | 10.0% |
| !! | TGAAAAAAATGTTTATTGTT+TGG | + | chr7_2:39556922-39556941 | Msa1057530:CDS | 15.0% |
| !!! | GTTAATTTTTACAAGAATTT+AGG | + | chr7_2:39557274-39557293 | Msa1057530:intron | 15.0% |
| !!! | TTGGAATTTTTAAGTATAAT+TGG | + | chr7_2:39557607-39557626 | Msa1057530:intron | 15.0% |
| !!! | AAAATGGATTTTGAATAAAA+TGG | - | chr7_2:39557812-39557831 | None:intergenic | 15.0% |
| !!! | AAAAAATATGATGATGAAAA+TGG | - | chr7_2:39557828-39557847 | None:intergenic | 15.0% |
| !! | TGAAAAAAATGTTTATTGTT+TGG | + | chr7_2:39556922-39556941 | Msa1057530:CDS | 15.0% |
| !!! | GTTAATTTTTACAAGAATTT+AGG | + | chr7_2:39557274-39557293 | Msa1057530:intron | 15.0% |
| !!! | TTGGAATTTTTAAGTATAAT+TGG | + | chr7_2:39557607-39557626 | Msa1057530:intron | 15.0% |
| !!! | AAAATGGATTTTGAATAAAA+TGG | - | chr7_2:39557812-39557831 | None:intergenic | 15.0% |
| !!! | AAAAAATATGATGATGAAAA+TGG | - | chr7_2:39557828-39557847 | None:intergenic | 15.0% |
| !!! | TTCTCTCTTTTTTTTTTTGT+TGG | + | chr7_2:39556739-39556758 | Msa1057530:intron | 20.0% |
| !!! | ATGTGTATCATGATATTTTA+AGG | + | chr7_2:39557105-39557124 | Msa1057530:CDS | 20.0% |
| !!! | TATCATGATATTTTAAGGAT+GGG | + | chr7_2:39557110-39557129 | Msa1057530:CDS | 20.0% |
| !!! | TTCAATTTTTAGTGTATGTT+TGG | + | chr7_2:39557547-39557566 | Msa1057530:intron | 20.0% |
| !!! | TACAATGATTTTATCATGTT+TGG | + | chr7_2:39557588-39557607 | Msa1057530:intron | 20.0% |
| !! | ATATTCAATTCGTGTAAAAT+TGG | - | chr7_2:39557722-39557741 | None:intergenic | 20.0% |
| !!! | ATGTTGAATTTAGTTTTAGT+TGG | + | chr7_2:39557770-39557789 | Msa1057530:intron | 20.0% |
| !!! | TAATTGTTTGTCTGATTTTA+TGG | - | chr7_2:39557930-39557949 | None:intergenic | 20.0% |
| !!! | TTCTCTCTTTTTTTTTTTGT+TGG | + | chr7_2:39556739-39556758 | Msa1057530:intron | 20.0% |
| !!! | ATGTGTATCATGATATTTTA+AGG | + | chr7_2:39557105-39557124 | Msa1057530:CDS | 20.0% |
| !!! | TATCATGATATTTTAAGGAT+GGG | + | chr7_2:39557110-39557129 | Msa1057530:CDS | 20.0% |
| !!! | TTCAATTTTTAGTGTATGTT+TGG | + | chr7_2:39557547-39557566 | Msa1057530:intron | 20.0% |
| !!! | TACAATGATTTTATCATGTT+TGG | + | chr7_2:39557588-39557607 | Msa1057530:intron | 20.0% |
| !! | ATATTCAATTCGTGTAAAAT+TGG | - | chr7_2:39557722-39557741 | None:intergenic | 20.0% |
| !!! | ATGTTGAATTTAGTTTTAGT+TGG | + | chr7_2:39557770-39557789 | Msa1057530:intron | 20.0% |
| !!! | TAATTGTTTGTCTGATTTTA+TGG | - | chr7_2:39557930-39557949 | None:intergenic | 20.0% |
| ! | CTAAAAGTTAATTCAATCCA+TGG | + | chr7_2:39556612-39556631 | Msa1057530:intron | 25.0% |
| !!! | TTCCTATTTTAGTATCTTGT+TGG | + | chr7_2:39556672-39556691 | Msa1057530:intron | 25.0% |
| !!! | GTATCATGATATTTTAAGGA+TGG | + | chr7_2:39557109-39557128 | Msa1057530:CDS | 25.0% |
| !! | CTATTCAAGTAAGTGATTTT+TGG | + | chr7_2:39557162-39557181 | Msa1057530:intron | 25.0% |
| !! | TACCACAATTAATTTTGTGT+TGG | + | chr7_2:39557329-39557348 | Msa1057530:intron | 25.0% |
| ! | AGATTAAATATGAATGTGAG+AGG | - | chr7_2:39557523-39557542 | None:intergenic | 25.0% |
| ! | CTAAAAGTTAATTCAATCCA+TGG | + | chr7_2:39556612-39556631 | Msa1057530:intron | 25.0% |
| !!! | TTCCTATTTTAGTATCTTGT+TGG | + | chr7_2:39556672-39556691 | Msa1057530:intron | 25.0% |
| !!! | GTATCATGATATTTTAAGGA+TGG | + | chr7_2:39557109-39557128 | Msa1057530:CDS | 25.0% |
| !! | CTATTCAAGTAAGTGATTTT+TGG | + | chr7_2:39557162-39557181 | Msa1057530:intron | 25.0% |
| !! | TACCACAATTAATTTTGTGT+TGG | + | chr7_2:39557329-39557348 | Msa1057530:intron | 25.0% |
| ! | AGATTAAATATGAATGTGAG+AGG | - | chr7_2:39557523-39557542 | None:intergenic | 25.0% |
| !! | AGTAAAATATAGAAGCACCA+TGG | - | chr7_2:39556632-39556651 | None:intergenic | 30.0% |
| GACCAACAAGATACTAAAAT+AGG | - | chr7_2:39556677-39556696 | None:intergenic | 30.0% | |
| ! | TCATGTTTTGTGTACAGTTT+AGG | + | chr7_2:39556804-39556823 | Msa1057530:intron | 30.0% |
| ACAAGAAAGAGAAAAGAAGA+AGG | - | chr7_2:39557013-39557032 | None:intergenic | 30.0% | |
| CACCAACACAAAATTAATTG+TGG | - | chr7_2:39557334-39557353 | None:intergenic | 30.0% | |
| ! | AAAACATTTGGTTCACTATC+TGG | + | chr7_2:39558054-39558073 | Msa1057530:CDS | 30.0% |
| !! | AGTAAAATATAGAAGCACCA+TGG | - | chr7_2:39556632-39556651 | None:intergenic | 30.0% |
| GACCAACAAGATACTAAAAT+AGG | - | chr7_2:39556677-39556696 | None:intergenic | 30.0% | |
| ! | TCATGTTTTGTGTACAGTTT+AGG | + | chr7_2:39556804-39556823 | Msa1057530:intron | 30.0% |
| ACAAGAAAGAGAAAAGAAGA+AGG | - | chr7_2:39557013-39557032 | None:intergenic | 30.0% | |
| CACCAACACAAAATTAATTG+TGG | - | chr7_2:39557334-39557353 | None:intergenic | 30.0% | |
| ! | AAAACATTTGGTTCACTATC+TGG | + | chr7_2:39558054-39558073 | Msa1057530:CDS | 30.0% |
| CTACAGTTCTACAGAACAAA+CGG | + | chr7_2:39557366-39557385 | Msa1057530:intron | 35.0% | |
| AGAGAGAGCAGAATTTGTAA+GGG | - | chr7_2:39557482-39557501 | None:intergenic | 35.0% | |
| ! | TTTATGGTTGTGTTTTCCAC+AGG | + | chr7_2:39558017-39558036 | Msa1057530:intron | 35.0% |
| ! | AGTCACTTGGTGAAAACATT+TGG | + | chr7_2:39558042-39558061 | Msa1057530:CDS | 35.0% |
| TCTAGTCCAGAATCAGATAA+TGG | - | chr7_2:39558108-39558127 | None:intergenic | 35.0% | |
| CTACAGTTCTACAGAACAAA+CGG | + | chr7_2:39557366-39557385 | Msa1057530:intron | 35.0% | |
| AGAGAGAGCAGAATTTGTAA+GGG | - | chr7_2:39557482-39557501 | None:intergenic | 35.0% | |
| ! | TTTATGGTTGTGTTTTCCAC+AGG | + | chr7_2:39558017-39558036 | Msa1057530:intron | 35.0% |
| ! | AGTCACTTGGTGAAAACATT+TGG | + | chr7_2:39558042-39558061 | Msa1057530:CDS | 35.0% |
| TCTAGTCCAGAATCAGATAA+TGG | - | chr7_2:39558108-39558127 | None:intergenic | 35.0% | |
| CACCAAATGTTGTTCCACTT+TGG | + | chr7_2:39556834-39556853 | Msa1057530:CDS | 40.0% | |
| AGCCAAAGTGGAACAACATT+TGG | - | chr7_2:39556839-39556858 | None:intergenic | 40.0% | |
| GAGAGAGAGCAGAATTTGTA+AGG | - | chr7_2:39557483-39557502 | None:intergenic | 40.0% | |
| ! | AGAATCAGATAATGGTGGCA+TGG | - | chr7_2:39558100-39558119 | None:intergenic | 40.0% |
| ATGCCACCATTATCTGATTC+TGG | + | chr7_2:39558099-39558118 | Msa1057530:CDS | 40.0% | |
| ! | AGTCCAGAATCAGATAATGG+TGG | - | chr7_2:39558105-39558124 | None:intergenic | 40.0% |
| ! | TCTGATTCTGGACTAGATGA+CGG | + | chr7_2:39558111-39558130 | Msa1057530:CDS | 40.0% |
| ! | AAGGGCAGTTTTGCAATCAA+TGG | - | chr7_2:39558211-39558230 | None:intergenic | 40.0% |
| AGTCTGATGAATAGGAGGAA+AGG | + | chr7_2:39558336-39558355 | Msa1057530:CDS | 40.0% | |
| CACCAAATGTTGTTCCACTT+TGG | + | chr7_2:39556834-39556853 | Msa1057530:CDS | 40.0% | |
| AGCCAAAGTGGAACAACATT+TGG | - | chr7_2:39556839-39556858 | None:intergenic | 40.0% | |
| GAGAGAGAGCAGAATTTGTA+AGG | - | chr7_2:39557483-39557502 | None:intergenic | 40.0% | |
| ! | AGAATCAGATAATGGTGGCA+TGG | - | chr7_2:39558100-39558119 | None:intergenic | 40.0% |
| ATGCCACCATTATCTGATTC+TGG | + | chr7_2:39558099-39558118 | Msa1057530:CDS | 40.0% | |
| ! | AGTCCAGAATCAGATAATGG+TGG | - | chr7_2:39558105-39558124 | None:intergenic | 40.0% |
| ! | TCTGATTCTGGACTAGATGA+CGG | + | chr7_2:39558111-39558130 | Msa1057530:CDS | 40.0% |
| ! | AAGGGCAGTTTTGCAATCAA+TGG | - | chr7_2:39558211-39558230 | None:intergenic | 40.0% |
| AGTCTGATGAATAGGAGGAA+AGG | + | chr7_2:39558336-39558355 | Msa1057530:CDS | 40.0% | |
| AGCATCACTTGAAGCCAAAG+TGG | - | chr7_2:39556851-39556870 | None:intergenic | 45.0% | |
| !! | GAGGAGCATCTCTTTGGAAT+TGG | - | chr7_2:39557420-39557439 | None:intergenic | 45.0% |
| !! | TTGCTTGAGGAGCATCTCTT+TGG | - | chr7_2:39557426-39557445 | None:intergenic | 45.0% |
| GGTTCTGCAGATATTGCTTG+AGG | - | chr7_2:39557439-39557458 | None:intergenic | 45.0% | |
| GTAAGGGTCTTGAAGACTTC+TGG | - | chr7_2:39557466-39557485 | None:intergenic | 45.0% | |
| ATTCTGCTCTCTCTCTTGCA+AGG | + | chr7_2:39557488-39557507 | Msa1057530:CDS | 45.0% | |
| ! | TTTTCCACAGGTGAGTCACT+TGG | + | chr7_2:39558029-39558048 | Msa1057530:intron | 45.0% |
| ! | GGATGAAGTTCGGTTTGAAC+CGG | - | chr7_2:39558169-39558188 | None:intergenic | 45.0% |
| GGTTCAAACCGAACTTCATC+CGG | + | chr7_2:39558168-39558187 | Msa1057530:CDS | 45.0% | |
| TCTCTTCTTTCGGACAACCT+CGG | - | chr7_2:39558250-39558269 | None:intergenic | 45.0% | |
| GTTGTCCGAAAGAAGAGAAC+CGG | + | chr7_2:39558252-39558271 | Msa1057530:CDS | 45.0% | |
| !! | TGACACCGGTTCTCTTCTTT+CGG | - | chr7_2:39558260-39558279 | None:intergenic | 45.0% |
| TCTCGGAGAGTCTGATGAAT+AGG | + | chr7_2:39558328-39558347 | Msa1057530:CDS | 45.0% | |
| CAATATAAGGGGGCTCTATG+TGG | - | chr7_2:39558366-39558385 | None:intergenic | 45.0% | |
| AGCATCACTTGAAGCCAAAG+TGG | - | chr7_2:39556851-39556870 | None:intergenic | 45.0% | |
| !! | GAGGAGCATCTCTTTGGAAT+TGG | - | chr7_2:39557420-39557439 | None:intergenic | 45.0% |
| !! | TTGCTTGAGGAGCATCTCTT+TGG | - | chr7_2:39557426-39557445 | None:intergenic | 45.0% |
| GGTTCTGCAGATATTGCTTG+AGG | - | chr7_2:39557439-39557458 | None:intergenic | 45.0% | |
| GTAAGGGTCTTGAAGACTTC+TGG | - | chr7_2:39557466-39557485 | None:intergenic | 45.0% | |
| ATTCTGCTCTCTCTCTTGCA+AGG | + | chr7_2:39557488-39557507 | Msa1057530:CDS | 45.0% | |
| ! | TTTTCCACAGGTGAGTCACT+TGG | + | chr7_2:39558029-39558048 | Msa1057530:intron | 45.0% |
| ! | GGATGAAGTTCGGTTTGAAC+CGG | - | chr7_2:39558169-39558188 | None:intergenic | 45.0% |
| GGTTCAAACCGAACTTCATC+CGG | + | chr7_2:39558168-39558187 | Msa1057530:CDS | 45.0% | |
| TCTCTTCTTTCGGACAACCT+CGG | - | chr7_2:39558250-39558269 | None:intergenic | 45.0% | |
| GTTGTCCGAAAGAAGAGAAC+CGG | + | chr7_2:39558252-39558271 | Msa1057530:CDS | 45.0% | |
| !! | TGACACCGGTTCTCTTCTTT+CGG | - | chr7_2:39558260-39558279 | None:intergenic | 45.0% |
| TCTCGGAGAGTCTGATGAAT+AGG | + | chr7_2:39558328-39558347 | Msa1057530:CDS | 45.0% | |
| CAATATAAGGGGGCTCTATG+TGG | - | chr7_2:39558366-39558385 | None:intergenic | 45.0% | |
| !!! | TTTTTAGTAAATTAATAAAT+GGG | - | chr7_2:39556717-39556736 | None:intergenic | 5.0% |
| !!! | TTTTTTAGTAAATTAATAAA+TGG | - | chr7_2:39556718-39556737 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTGTTATTTTA+TGG | + | chr7_2:39558001-39558020 | Msa1057530:intron | 5.0% |
| !!! | TTTTTAGTAAATTAATAAAT+GGG | - | chr7_2:39556717-39556736 | None:intergenic | 5.0% |
| !!! | TTTTTTAGTAAATTAATAAA+TGG | - | chr7_2:39556718-39556737 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTGTTATTTTA+TGG | + | chr7_2:39558001-39558020 | Msa1057530:intron | 5.0% |
| GCATGAGGAGAAACACAGTG+AGG | - | chr7_2:39556968-39556987 | None:intergenic | 50.0% | |
| ! | AAGAGTCTGTGAGAGGCATG+AGG | - | chr7_2:39556983-39557002 | None:intergenic | 50.0% |
| AACCTGCAAGAGTCTGTGAG+AGG | - | chr7_2:39556990-39557009 | None:intergenic | 50.0% | |
| GTCTTGAAGACTTCTGGCAC+AGG | - | chr7_2:39557460-39557479 | None:intergenic | 50.0% | |
| TTCACCAAGTGACTCACCTG+TGG | - | chr7_2:39558036-39558055 | None:intergenic | 50.0% | |
| CGGTCTAATGACACCTGACT+CGG | + | chr7_2:39558131-39558150 | Msa1057530:CDS | 50.0% | |
| ! | GAAGTTCGGTTTGAACCGGA+TGG | - | chr7_2:39558165-39558184 | None:intergenic | 50.0% |
| AACCGAACTTCATCCGGTTC+TGG | + | chr7_2:39558174-39558193 | Msa1057530:CDS | 50.0% | |
| CACCAGAACCGGATGAAGTT+CGG | - | chr7_2:39558179-39558198 | None:intergenic | 50.0% | |
| TGGTCGGAAAGTGATGACAC+CGG | - | chr7_2:39558274-39558293 | None:intergenic | 50.0% | |
| CGGAGAGTCTGATGAATAGG+AGG | + | chr7_2:39558331-39558350 | Msa1057530:CDS | 50.0% | |
| GCATGAGGAGAAACACAGTG+AGG | - | chr7_2:39556968-39556987 | None:intergenic | 50.0% | |
| ! | AAGAGTCTGTGAGAGGCATG+AGG | - | chr7_2:39556983-39557002 | None:intergenic | 50.0% |
| AACCTGCAAGAGTCTGTGAG+AGG | - | chr7_2:39556990-39557009 | None:intergenic | 50.0% | |
| GTCTTGAAGACTTCTGGCAC+AGG | - | chr7_2:39557460-39557479 | None:intergenic | 50.0% | |
| TTCACCAAGTGACTCACCTG+TGG | - | chr7_2:39558036-39558055 | None:intergenic | 50.0% | |
| CGGTCTAATGACACCTGACT+CGG | + | chr7_2:39558131-39558150 | Msa1057530:CDS | 50.0% | |
| ! | GAAGTTCGGTTTGAACCGGA+TGG | - | chr7_2:39558165-39558184 | None:intergenic | 50.0% |
| AACCGAACTTCATCCGGTTC+TGG | + | chr7_2:39558174-39558193 | Msa1057530:CDS | 50.0% | |
| CACCAGAACCGGATGAAGTT+CGG | - | chr7_2:39558179-39558198 | None:intergenic | 50.0% | |
| TGGTCGGAAAGTGATGACAC+CGG | - | chr7_2:39558274-39558293 | None:intergenic | 50.0% | |
| CGGAGAGTCTGATGAATAGG+AGG | + | chr7_2:39558331-39558350 | Msa1057530:CDS | 50.0% | |
| TGCCTCTCACAGACTCTTGC+AGG | + | chr7_2:39556985-39557004 | Msa1057530:CDS | 55.0% | |
| GATGGTTCGAGAACCGAGTC+AGG | - | chr7_2:39558147-39558166 | None:intergenic | 55.0% | |
| ! | GACTCGGTTCTCGAACCATC+CGG | + | chr7_2:39558147-39558166 | Msa1057530:CDS | 55.0% |
| ! | CGAACTTCATCCGGTTCTGG+TGG | + | chr7_2:39558177-39558196 | Msa1057530:CDS | 55.0% |
| GGCGATGTATCCACCAGAAC+CGG | - | chr7_2:39558190-39558209 | None:intergenic | 55.0% | |
| GGTAGTAGCGGTGCAAGCAA+GGG | - | chr7_2:39558229-39558248 | None:intergenic | 55.0% | |
| TCGGACAACCTCGGTAGTAG+CGG | - | chr7_2:39558241-39558260 | None:intergenic | 55.0% | |
| TCACTTTCCGACCACCGTGT+CGG | + | chr7_2:39558280-39558299 | Msa1057530:CDS | 55.0% | |
| CTCTCCGAGATTTCCGACAC+CGG | - | chr7_2:39558318-39558337 | None:intergenic | 55.0% | |
| TGCCTCTCACAGACTCTTGC+AGG | + | chr7_2:39556985-39557004 | Msa1057530:CDS | 55.0% | |
| GATGGTTCGAGAACCGAGTC+AGG | - | chr7_2:39558147-39558166 | None:intergenic | 55.0% | |
| ! | GACTCGGTTCTCGAACCATC+CGG | + | chr7_2:39558147-39558166 | Msa1057530:CDS | 55.0% |
| ! | CGAACTTCATCCGGTTCTGG+TGG | + | chr7_2:39558177-39558196 | Msa1057530:CDS | 55.0% |
| GGCGATGTATCCACCAGAAC+CGG | - | chr7_2:39558190-39558209 | None:intergenic | 55.0% | |
| GGTAGTAGCGGTGCAAGCAA+GGG | - | chr7_2:39558229-39558248 | None:intergenic | 55.0% | |
| TCGGACAACCTCGGTAGTAG+CGG | - | chr7_2:39558241-39558260 | None:intergenic | 55.0% | |
| TCACTTTCCGACCACCGTGT+CGG | + | chr7_2:39558280-39558299 | Msa1057530:CDS | 55.0% | |
| CTCTCCGAGATTTCCGACAC+CGG | - | chr7_2:39558318-39558337 | None:intergenic | 55.0% | |
| CGGTAGTAGCGGTGCAAGCA+AGG | - | chr7_2:39558230-39558249 | None:intergenic | 60.0% | |
| TGCTTGCACCGCTACTACCG+AGG | + | chr7_2:39558230-39558249 | Msa1057530:CDS | 60.0% | |
| ! | CTCGCCGGTGTCGGAAATCT+CGG | + | chr7_2:39558311-39558330 | Msa1057530:CDS | 60.0% |
| CGGTAGTAGCGGTGCAAGCA+AGG | - | chr7_2:39558230-39558249 | None:intergenic | 60.0% | |
| TGCTTGCACCGCTACTACCG+AGG | + | chr7_2:39558230-39558249 | Msa1057530:CDS | 60.0% | |
| ! | CTCGCCGGTGTCGGAAATCT+CGG | + | chr7_2:39558311-39558330 | Msa1057530:CDS | 60.0% |
| ATGCAGGCCGACACGGTGGT+CGG | - | chr7_2:39558290-39558309 | None:intergenic | 65.0% | |
| ATGCAGGCCGACACGGTGGT+CGG | - | chr7_2:39558290-39558309 | None:intergenic | 65.0% | |
| GAGCATGCAGGCCGACACGG+TGG | - | chr7_2:39558294-39558313 | None:intergenic | 70.0% | |
| GGCGAGCATGCAGGCCGACA+CGG | - | chr7_2:39558297-39558316 | None:intergenic | 70.0% | |
| ! | GTGTCGGCCTGCATGCTCGC+CGG | + | chr7_2:39558296-39558315 | Msa1057530:CDS | 70.0% |
| GCCTGCATGCTCGCCGGTGT+CGG | + | chr7_2:39558302-39558321 | Msa1057530:CDS | 70.0% | |
| TCCGACACCGGCGAGCATGC+AGG | - | chr7_2:39558306-39558325 | None:intergenic | 70.0% | |
| GAGCATGCAGGCCGACACGG+TGG | - | chr7_2:39558294-39558313 | None:intergenic | 70.0% | |
| GGCGAGCATGCAGGCCGACA+CGG | - | chr7_2:39558297-39558316 | None:intergenic | 70.0% | |
| ! | GTGTCGGCCTGCATGCTCGC+CGG | + | chr7_2:39558296-39558315 | Msa1057530:CDS | 70.0% |
| GCCTGCATGCTCGCCGGTGT+CGG | + | chr7_2:39558302-39558321 | Msa1057530:CDS | 70.0% | |
| TCCGACACCGGCGAGCATGC+AGG | - | chr7_2:39558306-39558325 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 39556578 | 39558386 | 39556578 | ID=Msa1057530;Name=Msa1057530 |
| chr7_2 | mRNA | 39556578 | 39558386 | 39556578 | ID=Msa1057530-mRNA-1;Parent=Msa1057530;Name=Msa1057530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.8|1|1|5|0|249 |
| chr7_2 | exon | 39556578 | 39556580 | 39556578 | ID=Msa1057530-mRNA-1:exon:7361;Parent=Msa1057530-mRNA-1 |
| chr7_2 | exon | 39556821 | 39557006 | 39556821 | ID=Msa1057530-mRNA-1:exon:7362;Parent=Msa1057530-mRNA-1 |
| chr7_2 | exon | 39557095 | 39557169 | 39557095 | ID=Msa1057530-mRNA-1:exon:7363;Parent=Msa1057530-mRNA-1 |
| chr7_2 | exon | 39557372 | 39557509 | 39557372 | ID=Msa1057530-mRNA-1:exon:7364;Parent=Msa1057530-mRNA-1 |
| chr7_2 | exon | 39558039 | 39558386 | 39558039 | ID=Msa1057530-mRNA-1:exon:7365;Parent=Msa1057530-mRNA-1 |
| chr7_2 | CDS | 39556578 | 39556580 | 39556578 | ID=Msa1057530-mRNA-1:cds;Parent=Msa1057530-mRNA-1 |
| chr7_2 | CDS | 39556821 | 39557006 | 39556821 | ID=Msa1057530-mRNA-1:cds;Parent=Msa1057530-mRNA-1 |
| chr7_2 | CDS | 39557095 | 39557169 | 39557095 | ID=Msa1057530-mRNA-1:cds;Parent=Msa1057530-mRNA-1 |
| chr7_2 | CDS | 39557372 | 39557509 | 39557372 | ID=Msa1057530-mRNA-1:cds;Parent=Msa1057530-mRNA-1 |
| chr7_2 | CDS | 39558039 | 39558386 | 39558039 | ID=Msa1057530-mRNA-1:cds;Parent=Msa1057530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
