AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1057660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1057660 MtrunA17_Chr7g0230771 94.715 738 16 6 1 721 1 732 0.0 1412
Msa1057660 MtrunA17_Chr7g0230731 92.954 738 26 8 1 721 1 729 0.0 1249
Msa1057660 MtrunA17_Chr4g0012071 54.221 533 188 12 205 721 60 552 4.03e-179 522
Msa1057660 MtrunA17_Chr8g0373561 36.043 369 220 11 363 721 180 542 5.98e-60 211
Msa1057660 MtrunA17_Chr2g0306641 31.579 380 225 10 362 720 122 487 7.56e-42 159
Msa1057660 MtrunA17_Chr7g0224271 27.532 385 247 9 362 721 297 674 7.78e-37 147
Msa1057660 MtrunA17_Chr3g0110971 28.421 380 243 8 362 720 216 587 8.32e-36 143
Msa1057660 MtrunA17_Chr8g0376381 28.267 375 235 10 362 720 166 522 2.36e-35 141
Msa1057660 MtrunA17_Chr4g0038761 29.348 368 233 12 368 720 87 442 2.48e-34 136
Msa1057660 MtrunA17_Chr3g0101141 27.128 376 248 8 364 720 174 542 5.46e-33 134
Msa1057660 MtrunA17_Chr4g0039661 29.136 405 268 12 328 720 158 555 8.50e-30 124
Msa1057660 MtrunA17_Chr5g0424131 29.262 393 235 15 362 721 118 500 1.20e-29 123
Msa1057660 MtrunA17_Chr5g0445331 25.858 379 249 7 366 720 162 532 3.90e-29 122
Msa1057660 MtrunA17_Chr3g0125811 26.415 371 253 7 366 720 204 570 9.07e-28 118
Msa1057660 MtrunA17_Chr3g0114841 26.500 400 239 15 362 721 117 501 1.20e-26 114
Msa1057660 MtrunA17_Chr7g0245601 26.575 365 243 9 368 720 441 792 1.79e-26 115
Msa1057660 MtrunA17_Chr8g0383981 26.613 372 253 8 359 719 133 495 2.52e-26 113
Msa1057660 MtrunA17_Chr5g0447691 23.889 360 246 9 381 720 193 544 4.01e-26 113
Msa1057660 MtrunA17_Chr2g0319091 25.455 385 268 8 351 719 197 578 7.43e-26 112
Msa1057660 MtrunA17_Chr1g0159461 26.596 376 246 12 366 720 226 592 2.92e-25 111
Msa1057660 MtrunA17_Chr2g0290241 24.804 383 251 11 364 721 56 426 2.11e-24 106
Msa1057660 MtrunA17_Chr4g0057291 23.607 377 265 7 362 719 289 661 4.92e-24 107
Msa1057660 MtrunA17_Chr1g0183641 27.346 373 244 14 362 721 120 478 1.81e-23 104
Msa1057660 MtrunA17_Chr4g0057891 25.065 387 252 14 362 721 146 521 3.99e-23 103
Msa1057660 MtrunA17_Chr5g0403741 29.258 229 152 5 499 721 51 275 5.34e-23 99.8
Msa1057660 MtrunA17_Chr4g0076091 23.118 372 267 8 366 721 176 544 1.42e-22 102
Msa1057660 MtrunA17_Chr8g0357601 22.857 385 260 9 362 720 179 552 1.16e-19 93.6
Msa1057660 MtrunA17_Chr2g0294461 23.885 381 268 8 361 720 206 585 8.14e-19 90.9
Msa1057660 MtrunA17_Chr2g0328431 23.181 371 261 9 366 719 290 653 8.88e-19 90.9
Msa1057660 MtrunA17_Chr2g0328381 25.538 372 252 11 366 719 276 640 1.15e-18 90.5
Msa1057660 MtrunA17_Chr1g0200401 26.263 396 240 15 362 719 77 458 1.60e-18 89.4
Msa1057660 MtrunA17_Chr7g0238891 22.572 381 256 7 366 720 373 740 6.69e-18 88.2
Msa1057660 MtrunA17_Chr7g0270031 25.067 371 256 11 366 720 190 554 7.23e-18 87.8
Msa1057660 MtrunA17_Chr2g0328341 23.636 385 243 10 366 719 273 637 2.04e-17 86.7
Msa1057660 MtrunA17_Chr4g0031721 22.276 413 280 10 336 719 283 683 2.92e-17 86.3
Msa1057660 MtrunA17_Chr4g0031741 23.577 369 263 7 366 719 285 649 4.08e-17 85.5
Msa1057660 MtrunA17_Chr2g0328391 23.238 383 251 10 366 719 300 668 4.40e-17 85.5
Msa1057660 MtrunA17_Chr2g0294471 23.196 388 272 10 351 720 197 576 4.84e-17 85.1
Msa1057660 MtrunA17_Chr2g0328411 22.195 410 281 11 339 719 253 653 4.67e-16 82.4
Msa1057660 MtrunA17_Chr2g0329591 23.529 391 249 11 366 720 75 451 2.42e-15 79.3
Msa1057660 MtrunA17_Chr4g0031731 22.849 372 260 10 366 715 255 621 5.69e-15 78.6
Msa1057660 MtrunA17_Chr4g0031701 21.951 369 267 8 366 715 255 621 1.76e-14 77.0
Msa1057660 MtrunA17_Chr4g0038851 33.529 170 105 2 342 503 19 188 2.14e-14 76.3
Msa1057660 MtrunA17_Chr4g0031711 22.043 372 271 7 366 719 362 732 2.72e-14 76.6
Msa1057660 MtrunA17_Chr7g0236851 26.546 388 225 16 366 719 295 656 1.63e-13 73.9
Msa1057660 MtrunA17_Chr2g0328401 21.714 350 250 7 366 698 291 633 1.69e-13 73.9
Msa1057660 MtrunA17_Chr5g0396491 29.697 165 114 1 342 504 33 197 4.12e-13 72.4
Msa1057660 MtrunA17_Chr2g0328361 24.332 374 229 13 366 719 275 614 1.09e-12 71.2
Msa1057660 MtrunA17_Chr2g0328371 24.900 249 170 6 435 670 2 246 1.95e-12 68.2
Msa1057660 MtrunA17_Chr5g0401131 21.465 396 250 12 366 720 115 490 2.91e-12 69.7
Msa1057660 MtrunA17_Chr1g0194621 23.134 402 273 15 346 720 126 518 4.79e-12 68.9
Msa1057660 MtrunA17_Chr3g0085681 28.500 200 128 4 366 557 26 218 7.65e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1057660 AT4G00150.1 57.216 388 137 11 338 721 193 555 4.76e-138 417
Msa1057660 AT2G45160.1 47.974 469 191 17 285 721 193 640 2.28e-119 372
Msa1057660 AT3G60630.1 44.821 502 201 16 264 721 154 623 4.69e-114 357
Msa1057660 AT4G36710.1 32.884 371 228 12 363 720 123 485 8.00e-55 196
Msa1057660 AT2G01570.1 29.839 372 237 10 362 720 221 581 2.20e-33 136
Msa1057660 AT5G66770.1 28.753 393 256 12 344 720 200 584 6.83e-32 132
Msa1057660 AT5G17490.1 29.067 375 235 12 362 720 157 516 7.40e-31 128
Msa1057660 AT1G14920.1 27.056 377 241 10 362 720 169 529 2.76e-30 126
Msa1057660 AT2G04890.1 26.216 370 248 8 366 720 54 413 2.79e-30 124
Msa1057660 AT3G03450.1 27.321 377 245 11 362 720 180 545 9.85e-30 124
Msa1057660 AT3G54220.1 27.298 359 249 7 368 719 296 649 3.30e-29 124
Msa1057660 AT5G41920.1 24.250 400 281 8 328 720 16 400 3.90e-28 117
Msa1057660 AT1G66350.1 26.400 375 242 11 362 721 152 507 5.01e-28 119
Msa1057660 AT5G48150.1 24.731 372 259 8 366 720 123 490 7.89e-28 118
Msa1057660 AT5G48150.4 24.731 372 259 8 366 720 123 490 7.89e-28 118
Msa1057660 AT5G48150.2 24.731 372 259 8 366 720 123 490 7.89e-28 118
Msa1057660 AT5G48150.3 24.731 372 259 8 366 720 123 490 7.89e-28 118
Msa1057660 AT1G50600.3 23.936 376 256 8 366 720 160 526 3.77e-27 116
Msa1057660 AT3G50650.1 28.804 368 230 11 375 720 185 542 4.59e-27 116
Msa1057660 AT4G08250.1 29.024 379 242 14 362 719 104 476 5.44e-27 115
Msa1057660 AT1G50600.1 23.936 376 256 8 366 720 231 597 8.97e-27 116
Msa1057660 AT1G50600.2 23.936 376 256 8 366 720 235 601 1.01e-26 116
Msa1057660 AT1G21450.1 24.331 411 272 10 339 720 193 593 1.06e-26 115
Msa1057660 AT4G17230.1 27.390 387 229 13 366 720 159 525 1.24e-26 115
Msa1057660 AT4G17230.2 27.390 387 229 13 366 720 159 525 1.24e-26 115
Msa1057660 AT5G59450.1 23.333 420 280 10 332 720 190 598 1.24e-22 103
Msa1057660 AT1G55580.1 25.455 330 213 8 411 720 129 445 2.67e-19 92.0
Msa1057660 AT1G63100.1 24.304 395 247 14 362 719 249 628 2.70e-19 92.8
Msa1057660 AT1G63100.2 24.304 395 247 14 362 719 274 653 3.19e-19 92.8
Msa1057660 AT1G07520.1 21.333 375 265 9 370 719 323 692 3.36e-18 89.7
Msa1057660 AT1G07520.3 21.123 374 267 8 370 719 324 693 3.70e-18 89.4
Msa1057660 AT1G07520.2 21.067 375 268 8 369 719 158 528 3.73e-18 89.0
Msa1057660 AT1G07520.4 21.067 375 268 8 369 719 158 528 3.73e-18 89.0
Msa1057660 AT3G46600.1 22.108 389 278 8 354 720 194 579 4.61e-17 85.9
Msa1057660 AT1G07530.1 23.077 377 258 9 366 719 397 764 5.38e-17 85.9
Msa1057660 AT3G46600.3 22.108 389 278 8 354 720 162 547 1.46e-16 84.0
Msa1057660 AT3G46600.2 22.162 370 270 7 366 720 5 371 2.70e-16 82.0
Msa1057660 AT4G37650.1 21.717 396 256 11 366 720 147 529 2.26e-14 77.0
Msa1057660 AT1G50420.1 31.788 151 89 3 362 503 54 199 3.66e-14 76.3
Msa1057660 AT5G52510.1 24.522 314 190 11 443 720 338 640 1.12e-13 75.1
Msa1057660 AT2G29065.1 21.900 379 267 8 366 719 253 627 8.67e-13 72.0

Find 154 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGAAGAACTGAAATT+AGG 0.187840 7_2:-39761861 None:intergenic
ATGTAATGTAACAAAATAAA+TGG 0.230568 7_2:-39760792 None:intergenic
AAGTTACCATTTGAAGAAAT+AGG 0.249425 7_2:-39761732 None:intergenic
CAATCACCAAATTTCTCCTT+TGG 0.252521 7_2:+39762361 Msa1057660:CDS
CATGAAAACCACATCAATTT+AGG 0.258965 7_2:-39763634 None:intergenic
TCTTCGCCGCCACCGCTTCC+AGG 0.267033 7_2:-39762230 None:intergenic
ATGCTAATTTGTCTATGTTT+AGG 0.271802 7_2:+39763458 Msa1057660:three_prime_UTR
TTCCATTATCAATTTCAATA+TGG 0.276508 7_2:-39761583 None:intergenic
GCTTCCCCAAAGGAGAAATT+TGG 0.280664 7_2:-39762367 None:intergenic
TTCCATATTGAAATTGATAA+TGG 0.285700 7_2:+39761581 Msa1057660:CDS
AAATGCCTCCTTAAAATAAA+AGG 0.302232 7_2:-39762405 None:intergenic
GTAGGAGTGGTTTGTTGATT+TGG 0.323080 7_2:-39761384 None:intergenic
AGATATTGAAGATGCATCTA+TGG 0.323147 7_2:+39761605 Msa1057660:CDS
AATCACCAAATTTCTCCTTT+GGG 0.333303 7_2:+39762362 Msa1057660:CDS
GTTTATGCCTAACCCTAGTT+TGG 0.334769 7_2:+39761980 Msa1057660:CDS
GGAACACGCGCACGGGATAT+TGG 0.339508 7_2:+39762331 Msa1057660:CDS
AATGGCGCCTAAGCAGAAAA+TGG 0.344322 7_2:+39762202 Msa1057660:CDS
CAACAAGATGTTGAATTCAA+TGG 0.350188 7_2:+39761672 Msa1057660:CDS
CTTGTGAAGAACTGAAATTA+GGG 0.351845 7_2:-39761860 None:intergenic
TGTTTGGTGCAGAGGATTCC+TGG 0.364499 7_2:+39763250 Msa1057660:CDS
TTTGCACTCCAGTCTTATTC+CGG 0.364854 7_2:+39763019 Msa1057660:CDS
AGTTACCATTTGAAGAAATA+GGG 0.368741 7_2:-39761731 None:intergenic
ATCGGTGGAAGCGCCGCCTC+CGG 0.369854 7_2:-39761442 None:intergenic
ACTTATAGACGCCGGTAATC+CGG 0.404547 7_2:+39762310 Msa1057660:CDS
CTTGACCCTATTTCTTCAAA+TGG 0.407880 7_2:+39761726 Msa1057660:CDS
AAAGATGTGGAATGGAAGAT+TGG 0.408700 7_2:+39761517 Msa1057660:CDS
TTTCCTATGTATTCTTCAAA+AGG 0.413997 7_2:-39761225 None:intergenic
AAATTTGCAAACTGCAGAAC+AGG 0.415407 7_2:-39762533 None:intergenic
TATGTATTCTTCAAAAGGTA+AGG 0.415901 7_2:-39761220 None:intergenic
GTGCGCGTGTTCCGGATTAC+CGG 0.417521 7_2:-39762321 None:intergenic
GGGAACCCTGGAAGCGGTGG+CGG 0.418143 7_2:+39762224 Msa1057660:CDS
AGTCTCTGAATTCTGTTTCG+TGG 0.422058 7_2:+39762816 Msa1057660:CDS
AATATCCCGTGCGCGTGTTC+CGG 0.422409 7_2:-39762329 None:intergenic
TTTGTTATTTCCACTTATGA+TGG 0.424153 7_2:+39763482 Msa1057660:three_prime_UTR
AGAGTCGCAGGCAGAGTGTT+TGG 0.429838 7_2:+39763234 Msa1057660:CDS
ATGGCGCCTAAGCAGAAAAT+GGG 0.433521 7_2:+39762203 Msa1057660:CDS
ATGTTTACTTCCATCATAAG+TGG 0.439594 7_2:-39763492 None:intergenic
CCACAGCTTCAAGCAATGCT+TGG 0.439953 7_2:-39762565 None:intergenic
GGCTGCGCCGGTGGTGCTAT+CGG 0.440497 7_2:-39761460 None:intergenic
TCGATCATCTGAAGGACATC+CGG 0.441979 7_2:-39763082 None:intergenic
TTCATCCCTCTACTAGCAAA+AGG 0.442041 7_2:-39761825 None:intergenic
TAATTTGAGAAAGAGCAAAT+AGG 0.442683 7_2:-39762881 None:intergenic
TTTGAAGAATACATAGGAAA+AGG 0.443319 7_2:+39761228 Msa1057660:CDS
ACTAGCCTCTTGCTCAAGAT+TGG 0.445518 7_2:+39762482 Msa1057660:CDS
ATCTCATCTCGGTTTCAACT+TGG 0.447156 7_2:+39763332 Msa1057660:CDS
TTTGTTTGCCGCGGCTGCGC+CGG 0.461598 7_2:-39761472 None:intergenic
TCACAAGTTTCACTTTCTCA+TGG 0.465348 7_2:+39761876 Msa1057660:CDS
TTCTATCCTGCGAGCGCAAA+CGG 0.467609 7_2:-39763147 None:intergenic
GGTGCAGAGGATTCCTGGTA+GGG 0.470286 7_2:+39763255 Msa1057660:CDS
ATCAAGTGATTCAAGCAAAC+CGG 0.470386 7_2:-39763038 None:intergenic
TCGCAATCGCGTAGTGGCTG+CGG 0.474481 7_2:-39762839 None:intergenic
GTGGCTGAAGCTGAATCTCT+TGG 0.474531 7_2:-39762037 None:intergenic
TAAAAGGCAGCCCTTTGAAA+AGG 0.479249 7_2:-39762389 None:intergenic
GCCTAAAATTGTCGTAACAT+TGG 0.480828 7_2:+39762949 Msa1057660:CDS
AGGGAAAATTGTTGCTATGC+GGG 0.481377 7_2:+39761321 Msa1057660:CDS
CCATTGGCCTCTGCTGCAGA+TGG 0.481891 7_2:-39762184 None:intergenic
AAGATGTGGAATGGAAGATT+GGG 0.482044 7_2:+39761518 Msa1057660:CDS
CGCAGGATAGAACACTTCCC+TGG 0.482072 7_2:+39763158 Msa1057660:CDS
AGCTTCAAGCAATGCTTGGT+TGG 0.488113 7_2:-39762561 None:intergenic
TGGTGCAGAGGATTCCTGGT+AGG 0.496504 7_2:+39763254 Msa1057660:CDS
ACGCGATTGCGAAGCAGTTG+TGG 0.497464 7_2:+39762850 Msa1057660:CDS
TCACACGGTAGCGCCGGAGG+CGG 0.497760 7_2:+39761429 Msa1057660:CDS
AGCACTAAAGGCAGGTATGA+AGG 0.498213 7_2:-39762905 None:intergenic
ATCTTGAGCAAGAGGCTAGT+TGG 0.505941 7_2:-39762479 None:intergenic
CGAGAAATACTATCTTCAAC+CGG 0.509431 7_2:+39763102 Msa1057660:CDS
CGGTGGCGGCGAAGATGTAT+CGG 0.512246 7_2:+39762238 Msa1057660:CDS
GCATAAACTGAGCTTGGTGT+TGG 0.513586 7_2:-39761965 None:intergenic
CCATCTGCAGCAGAGGCCAA+TGG 0.514076 7_2:+39762184 Msa1057660:CDS
CGATCATCTGAAGGACATCC+GGG 0.514286 7_2:-39763081 None:intergenic
ATCACCAAATTTCTCCTTTG+GGG 0.516046 7_2:+39762363 Msa1057660:CDS
TTTGAGCCGTTTGCGCTCGC+AGG 0.516978 7_2:+39763141 Msa1057660:CDS
ACAATGGTCTTCATTTATGC+AGG 0.517675 7_2:+39762637 Msa1057660:CDS
GTGCAGAGGATTCCTGGTAG+GGG 0.518621 7_2:+39763256 Msa1057660:CDS
TGTCTTAATTAGCAACTGAA+TGG 0.523386 7_2:+39763526 Msa1057660:three_prime_UTR
AAAACAAGCTTCTCAACTGC+CGG 0.524789 7_2:-39763121 None:intergenic
CCAAGCATTGCTTGAAGCTG+TGG 0.524919 7_2:+39762565 Msa1057660:CDS
CTTCGCCGCCACCGCTTCCA+GGG 0.526440 7_2:-39762229 None:intergenic
AGAACTCACTTGTCTTGTGT+TGG 0.527376 7_2:+39763299 Msa1057660:CDS
GTTTGCCGCGGCTGCGCCGG+TGG 0.527393 7_2:-39761469 None:intergenic
CACTTGTCTTGTGTTGGCAA+AGG 0.532124 7_2:+39763305 Msa1057660:CDS
ATGGGGAACCCTGGAAGCGG+TGG 0.534973 7_2:+39762221 Msa1057660:CDS
TCATCCCTCTACTAGCAAAA+GGG 0.536599 7_2:-39761824 None:intergenic
TGTCTTGTGTTGGCAAAGGA+AGG 0.536796 7_2:+39763309 Msa1057660:CDS
GACAGTGTTGAGGATGAAGT+AGG 0.538311 7_2:-39761402 None:intergenic
TTGGAGATGCTGAGAGTGAA+GGG 0.538398 7_2:+39763351 Msa1057660:exon
CAAGCAAACCGGAATAAGAC+TGG 0.539954 7_2:-39763027 None:intergenic
TCCACATGGAATCCCCTACC+AGG 0.543648 7_2:-39763268 None:intergenic
AGCTCGATTTCGTCGTGTGA+GGG 0.543987 7_2:-39762716 None:intergenic
ATGAAGAAGAAGAATGAATG+AGG 0.544065 7_2:+39760906 Msa1057660:exon
GGTTAGGCATAAACTGAGCT+TGG 0.545303 7_2:-39761971 None:intergenic
GATATTGAAGATGCATCTAT+GGG 0.546979 7_2:+39761606 Msa1057660:CDS
TAGTAACTTCACAGAGTCGC+AGG 0.548006 7_2:+39763222 Msa1057660:CDS
CTTGGAGATGCTGAGAGTGA+AGG 0.548025 7_2:+39763350 Msa1057660:exon
AAGCACCAATCTTGAGCAAG+AGG 0.549041 7_2:-39762487 None:intergenic
CAAGTTTCACTTTCTCATGG+TGG 0.549648 7_2:+39761879 Msa1057660:CDS
AGAGATTCAGCTTCAGCCAC+CGG 0.550288 7_2:+39762040 Msa1057660:CDS
TAGCACCACCGGCGCAGCCG+CGG 0.551893 7_2:+39761464 Msa1057660:CDS
TGAAGGTAAAAGATGTGGAA+TGG 0.553057 7_2:+39761509 Msa1057660:CDS
TTCCTCACCATCTGCAGCAG+AGG 0.553713 7_2:+39762177 Msa1057660:CDS
AAAATCATGTGCTGAGGAAA+CGG 0.554908 7_2:-39762998 None:intergenic
ATCGGCTCATCAGTTTCAGC+AGG 0.556576 7_2:+39762256 Msa1057660:CDS
TTCACGAATCGAAGCACTAA+AGG 0.557184 7_2:-39762917 None:intergenic
TGTTGAGGATGAAGTAGGAG+TGG 0.560505 7_2:-39761397 None:intergenic
AGGCAGAGTGTTTGGTGCAG+AGG 0.564913 7_2:+39763242 Msa1057660:CDS
GAATGATCTTGATCTTGACT+TGG 0.565052 7_2:-39761561 None:intergenic
GCACTAAAGGCAGGTATGAA+GGG 0.565237 7_2:-39762904 None:intergenic
GGCCTCTGCTGCAGATGGTG+AGG 0.565284 7_2:-39762179 None:intergenic
AAGCAGAAAATGGGGAACCC+TGG 0.568423 7_2:+39762212 Msa1057660:CDS
TCCTCACACGGTAGCGCCGG+AGG 0.569283 7_2:+39761426 Msa1057660:CDS
TCTTCCTCACACGGTAGCGC+CGG 0.570460 7_2:+39761423 Msa1057660:CDS
GAGAATCTGAAGCAATATGC+TGG 0.570600 7_2:+39762752 Msa1057660:CDS
AATCTCAGCAGCAGTAGCAG+TGG 0.572943 7_2:-39761790 None:intergenic
GGTAATCCGGAACACGCGCA+CGG 0.575492 7_2:+39762323 Msa1057660:CDS
AAGCTCGATTTCGTCGTGTG+AGG 0.575802 7_2:-39762717 None:intergenic
CAAGTTGAAGGTAAAAGATG+TGG 0.580900 7_2:+39761504 Msa1057660:CDS
AAAACCTACTCTTGTCATCA+GGG 0.582681 7_2:+39763182 Msa1057660:CDS
GCATTGCTTGAAGCTGTGGA+AGG 0.584725 7_2:+39762569 Msa1057660:CDS
TAGCATTGAATCATAAGTCA+AGG 0.587103 7_2:-39763441 None:intergenic
CGAATCGAAGCACTAAAGGC+AGG 0.590451 7_2:-39762913 None:intergenic
GTAATCCGGAACACGCGCAC+GGG 0.591224 7_2:+39762324 Msa1057660:CDS
GCAAAGGAAGGATCTCATCT+CGG 0.596929 7_2:+39763321 Msa1057660:CDS
CTTTGAAAAGGCTTCCCCAA+AGG 0.597839 7_2:-39762377 None:intergenic
GCTTCCACCGATAGCACCAC+CGG 0.598418 7_2:+39761453 Msa1057660:CDS
AGTATTTCTCGATCATCTGA+AGG 0.598913 7_2:-39763090 None:intergenic
TGCGCCGGTGGTGCTATCGG+TGG 0.599601 7_2:-39761457 None:intergenic
GGATAGGAGTTGTGATCGAA+CGG 0.600755 7_2:+39762970 Msa1057660:CDS
ATGTATTCTTCAAAAGGTAA+GGG 0.601264 7_2:-39761219 None:intergenic
TTATGCAGGAGTTAGCACTA+AGG 0.606201 7_2:+39762651 Msa1057660:CDS
GTCAAGAGATGTTTCTCAAG+AGG 0.606896 7_2:+39762123 Msa1057660:CDS
TGCAGCTGAGAGTATGTGAA+AGG 0.609194 7_2:-39762008 None:intergenic
AGTTCTGCTTCTTCTCCACA+TGG 0.609894 7_2:-39763282 None:intergenic
AAAATGGGGAACCCTGGAAG+CGG 0.610138 7_2:+39762218 Msa1057660:CDS
TTGCGTGCAGCATATAAAAG+TGG 0.613865 7_2:-39760639 None:intergenic
AAATTGTCGTAACATTGGAT+AGG 0.615531 7_2:+39762954 Msa1057660:CDS
ACGCGCACGGGATATTGGCG+CGG 0.617795 7_2:+39762336 Msa1057660:CDS
CATCCACAGCAGAAAACGCA+AGG 0.623255 7_2:+39760664 Msa1057660:five_prime_UTR
AGAACCCTGATGACAAGAGT+AGG 0.623547 7_2:-39763186 None:intergenic
CAGGAGTTAGCACTAAGGAA+TGG 0.623926 7_2:+39762656 Msa1057660:CDS
TCAACACTGTCTTCCTCACA+CGG 0.633334 7_2:+39761414 Msa1057660:CDS
TGAAGGGAACAATCTTGCAA+AGG 0.633869 7_2:+39763367 Msa1057660:three_prime_UTR
TCCTGGTAGGGGATTCCATG+TGG 0.639151 7_2:+39763267 Msa1057660:CDS
ACTGCTTCGCAATCGCGTAG+TGG 0.643756 7_2:-39762845 None:intergenic
AATGCAGTGATCTTGAGTGC+AGG 0.644744 7_2:-39762686 None:intergenic
GAGGGAAAATTGTTGCTATG+CGG 0.647727 7_2:+39761320 Msa1057660:CDS
GAGTTAGCACTAAGGAATGG+TGG 0.649571 7_2:+39762659 Msa1057660:CDS
GTGAAGTTACTAAACGTCAA+CGG 0.678122 7_2:-39763211 None:intergenic
TGGCGCCTAAGCAGAAAATG+GGG 0.679052 7_2:+39762204 Msa1057660:CDS
TGTTAGTGTTAATGTCCACC+CGG 0.680851 7_2:+39763063 Msa1057660:CDS
TGGTTCATAACAAACTGATG+AGG 0.687444 7_2:-39761945 None:intergenic
GCTGCAGAACTTATAGACGC+CGG 0.689078 7_2:+39762302 Msa1057660:CDS
CCACAGCAGAAAACGCAAGG+AGG 0.696982 7_2:+39760667 Msa1057660:five_prime_UTR
CCGGCTAAAAGACTCAATTG+TGG 0.698568 7_2:+39762059 Msa1057660:CDS
TCATCTGAAGGACATCCGGG+TGG 0.719806 7_2:-39763078 None:intergenic
GTGTGAGGAAGACAGTGTTG+AGG 0.783398 7_2:-39761412 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAATGTAACAAAATAAA+TGG - chr7_2:39760795-39760814 None:intergenic 15.0%
!!! CATATAATAGATTTTGATAT+TGG + chr7_2:39762605-39762624 Msa1057660:CDS 15.0%
!!! TATTGTTGTTCTTATGAAAA+TGG + chr7_2:39760960-39760979 Msa1057660:intron 20.0%
!!! ATTGTTGTTCTTATGAAAAT+GGG + chr7_2:39760961-39760980 Msa1057660:intron 20.0%
!! AACAACAACAAAATCAAAAT+GGG - chr7_2:39761126-39761145 None:intergenic 20.0%
!! TTCCATATTGAAATTGATAA+TGG + chr7_2:39761581-39761600 Msa1057660:CDS 20.0%
!! TTCCATTATCAATTTCAATA+TGG - chr7_2:39761586-39761605 None:intergenic 20.0%
!!! ATTCAATGGTTTTAGTTTTA+TGG + chr7_2:39761686-39761705 Msa1057660:CDS 20.0%
!!! ATAGATTTTGATATTGGTTT+TGG + chr7_2:39762611-39762630 Msa1057660:CDS 20.0%
!! ACAACATAGTTATGAGTTTT+TGG + chr7_2:39760755-39760774 Msa1057660:five_prime_UTR 25.0%
!! AAAAACAAGATCTGAAGTTA+AGG - chr7_2:39761057-39761076 None:intergenic 25.0%
! CAACAACAACAAAATCAAAA+TGG - chr7_2:39761127-39761146 None:intergenic 25.0%
! ATGTATTCTTCAAAAGGTAA+GGG - chr7_2:39761222-39761241 None:intergenic 25.0%
! TATGTATTCTTCAAAAGGTA+AGG - chr7_2:39761223-39761242 None:intergenic 25.0%
!!! TTACCTTTTGAAGAATACAT+AGG + chr7_2:39761222-39761241 Msa1057660:CDS 25.0%
! TTTCCTATGTATTCTTCAAA+AGG - chr7_2:39761228-39761247 None:intergenic 25.0%
! TTTGAAGAATACATAGGAAA+AGG + chr7_2:39761228-39761247 Msa1057660:CDS 25.0%
! TCAAAAACAACAACAGAATT+GGG - chr7_2:39761354-39761373 None:intergenic 25.0%
!!! TTTGTTGATTTGGTTTTTTG+AGG - chr7_2:39761377-39761396 None:intergenic 25.0%
! AGTTACCATTTGAAGAAATA+GGG - chr7_2:39761734-39761753 None:intergenic 25.0%
! AAGTTACCATTTGAAGAAAT+AGG - chr7_2:39761735-39761754 None:intergenic 25.0%
!! TATAATTGATCAGCTTTTCA+AGG + chr7_2:39762280-39762299 Msa1057660:CDS 25.0%
! AAATGCCTCCTTAAAATAAA+AGG - chr7_2:39762408-39762427 None:intergenic 25.0%
! TAATTTGAGAAAGAGCAAAT+AGG - chr7_2:39762884-39762903 None:intergenic 25.0%
!! ATGCTAATTTGTCTATGTTT+AGG + chr7_2:39763458-39763477 Msa1057660:three_prime_UTR 25.0%
!!! TTTGTTATTTCCACTTATGA+TGG + chr7_2:39763482-39763501 Msa1057660:three_prime_UTR 25.0%
TGTTGTGTTTGAGTGAAAAA+AGG + chr7_2:39760865-39760884 Msa1057660:five_prime_UTR 30.0%
ATGAAGAAGAAGAATGAATG+AGG + chr7_2:39760906-39760925 Msa1057660:exon 30.0%
!!! GTGTTTTTTTTGTCTGAACT+AGG + chr7_2:39761020-39761039 Msa1057660:intron 30.0%
TGTTTGAAAGAAACTTGTGT+TGG + chr7_2:39761169-39761188 Msa1057660:intron 30.0%
!! GTTGTTGTTGATTTAGATGA+AGG + chr7_2:39761191-39761210 Msa1057660:intron 30.0%
! AGCAAGAACAGTTTTTACAA+AGG + chr7_2:39761295-39761314 Msa1057660:CDS 30.0%
! AAGAACAGTTTTTACAAAGG+TGG + chr7_2:39761298-39761317 Msa1057660:CDS 30.0%
GTCAAAAACAACAACAGAAT+TGG - chr7_2:39761355-39761374 None:intergenic 30.0%
! AAAAACATACCACAAGTTGA+AGG + chr7_2:39761492-39761511 Msa1057660:CDS 30.0%
AGATATTGAAGATGCATCTA+TGG + chr7_2:39761605-39761624 Msa1057660:CDS 30.0%
GATATTGAAGATGCATCTAT+GGG + chr7_2:39761606-39761625 Msa1057660:CDS 30.0%
! TTAAGCAAGCTTTTACAAGT+TGG + chr7_2:39761630-39761649 Msa1057660:CDS 30.0%
CAACAAGATGTTGAATTCAA+TGG + chr7_2:39761672-39761691 Msa1057660:CDS 30.0%
CTTGTGAAGAACTGAAATTA+GGG - chr7_2:39761863-39761882 None:intergenic 30.0%
ACTTGTGAAGAACTGAAATT+AGG - chr7_2:39761864-39761883 None:intergenic 30.0%
TGAAAGGAAAAACCAAACTA+GGG - chr7_2:39761995-39762014 None:intergenic 30.0%
! AATTCCAAAGATACCGTTTT+TGG + chr7_2:39762094-39762113 Msa1057660:CDS 30.0%
AATCACCAAATTTCTCCTTT+GGG + chr7_2:39762362-39762381 Msa1057660:CDS 30.0%
!!! GATTTTGATATTGGTTTTGG+TGG + chr7_2:39762614-39762633 Msa1057660:CDS 30.0%
! TCCAATGTTACGACAATTTT+AGG - chr7_2:39762953-39762972 None:intergenic 30.0%
AAATTGTCGTAACATTGGAT+AGG + chr7_2:39762954-39762973 Msa1057660:CDS 30.0%
! TAGCATTGAATCATAAGTCA+AGG - chr7_2:39763444-39763463 None:intergenic 30.0%
ATGTTTACTTCCATCATAAG+TGG - chr7_2:39763495-39763514 None:intergenic 30.0%
TGTCTTAATTAGCAACTGAA+TGG + chr7_2:39763526-39763545 Msa1057660:three_prime_UTR 30.0%
! AACAGTTTTTACAAAGGTGG+AGG + chr7_2:39761301-39761320 Msa1057660:CDS 35.0%
! ACAGTTTTTACAAAGGTGGA+GGG + chr7_2:39761302-39761321 Msa1057660:CDS 35.0%
! CATCTTTTACCTTCAACTTG+TGG - chr7_2:39761504-39761523 None:intergenic 35.0%
! CAAGTTGAAGGTAAAAGATG+TGG + chr7_2:39761504-39761523 Msa1057660:CDS 35.0%
TGAAGGTAAAAGATGTGGAA+TGG + chr7_2:39761509-39761528 Msa1057660:CDS 35.0%
AAAGATGTGGAATGGAAGAT+TGG + chr7_2:39761517-39761536 Msa1057660:CDS 35.0%
AAGATGTGGAATGGAAGATT+GGG + chr7_2:39761518-39761537 Msa1057660:CDS 35.0%
GAATGATCTTGATCTTGACT+TGG - chr7_2:39761564-39761583 None:intergenic 35.0%
! CTTGACCCTATTTCTTCAAA+TGG + chr7_2:39761726-39761745 Msa1057660:CDS 35.0%
! ATTTCCCTTTTGCTAGTAGA+GGG + chr7_2:39761820-39761839 Msa1057660:CDS 35.0%
TCACAAGTTTCACTTTCTCA+TGG + chr7_2:39761876-39761895 Msa1057660:CDS 35.0%
TGGTTCATAACAAACTGATG+AGG - chr7_2:39761948-39761967 None:intergenic 35.0%
GTGAAAGGAAAAACCAAACT+AGG - chr7_2:39761996-39762015 None:intergenic 35.0%
GAATCCAAAAACGGTATCTT+TGG - chr7_2:39762101-39762120 None:intergenic 35.0%
!! AAGATACCGTTTTTGGATTC+AGG + chr7_2:39762101-39762120 Msa1057660:CDS 35.0%
TCTTGACCTGAATCCAAAAA+CGG - chr7_2:39762110-39762129 None:intergenic 35.0%
CAATCACCAAATTTCTCCTT+TGG + chr7_2:39762361-39762380 Msa1057660:CDS 35.0%
ATCACCAAATTTCTCCTTTG+GGG + chr7_2:39762363-39762382 Msa1057660:CDS 35.0%
!!! AAGGGCTGCCTTTTATTTTA+AGG + chr7_2:39762397-39762416 Msa1057660:CDS 35.0%
AAATTTGCAAACTGCAGAAC+AGG - chr7_2:39762536-39762555 None:intergenic 35.0%
!!! ATATTGGTTTTGGTGGACAA+TGG + chr7_2:39762621-39762640 Msa1057660:CDS 35.0%
ACAATGGTCTTCATTTATGC+AGG + chr7_2:39762637-39762656 Msa1057660:CDS 35.0%
GCCTAAAATTGTCGTAACAT+TGG + chr7_2:39762949-39762968 Msa1057660:CDS 35.0%
AAAATCATGTGCTGAGGAAA+CGG - chr7_2:39763001-39763020 None:intergenic 35.0%
ATCAAGTGATTCAAGCAAAC+CGG - chr7_2:39763041-39763060 None:intergenic 35.0%
AGTATTTCTCGATCATCTGA+AGG - chr7_2:39763093-39763112 None:intergenic 35.0%
CGAGAAATACTATCTTCAAC+CGG + chr7_2:39763102-39763121 Msa1057660:CDS 35.0%
AAAAACCTACTCTTGTCATC+AGG + chr7_2:39763181-39763200 Msa1057660:CDS 35.0%
AAAACCTACTCTTGTCATCA+GGG + chr7_2:39763182-39763201 Msa1057660:CDS 35.0%
GTGAAGTTACTAAACGTCAA+CGG - chr7_2:39763214-39763233 None:intergenic 35.0%
TTGCGTGCAGCATATAAAAG+TGG - chr7_2:39760642-39760661 None:intergenic 40.0%
GAGGGAAAATTGTTGCTATG+CGG + chr7_2:39761320-39761339 Msa1057660:CDS 40.0%
AGGGAAAATTGTTGCTATGC+GGG + chr7_2:39761321-39761340 Msa1057660:CDS 40.0%
!! GTAGGAGTGGTTTGTTGATT+TGG - chr7_2:39761387-39761406 None:intergenic 40.0%
!! TGGTATGTTTTTGTTTGCCG+CGG - chr7_2:39761484-39761503 None:intergenic 40.0%
! GATTTCCCTTTTGCTAGTAG+AGG + chr7_2:39761819-39761838 Msa1057660:CDS 40.0%
TCATCCCTCTACTAGCAAAA+GGG - chr7_2:39761827-39761846 None:intergenic 40.0%
TTCATCCCTCTACTAGCAAA+AGG - chr7_2:39761828-39761847 None:intergenic 40.0%
CAAGTTTCACTTTCTCATGG+TGG + chr7_2:39761879-39761898 Msa1057660:CDS 40.0%
GTTTATGCCTAACCCTAGTT+TGG + chr7_2:39761980-39761999 Msa1057660:CDS 40.0%
GGAAAAACCAAACTAGGGTT+AGG - chr7_2:39761990-39762009 None:intergenic 40.0%
! CCACAATTGAGTCTTTTAGC+CGG - chr7_2:39762062-39762081 None:intergenic 40.0%
GTCAAGAGATGTTTCTCAAG+AGG + chr7_2:39762123-39762142 Msa1057660:CDS 40.0%
! TTTGGGGAAGCCTTTTCAAA+GGG + chr7_2:39762379-39762398 Msa1057660:CDS 40.0%
! TAAAAGGCAGCCCTTTGAAA+AGG - chr7_2:39762392-39762411 None:intergenic 40.0%
!!! GGCTGCCTTTTATTTTAAGG+AGG + chr7_2:39762400-39762419 Msa1057660:CDS 40.0%
TTATGCAGGAGTTAGCACTA+AGG + chr7_2:39762651-39762670 Msa1057660:CDS 40.0%
! GAGAATCTGAAGCAATATGC+TGG + chr7_2:39762752-39762771 Msa1057660:CDS 40.0%
AGTCTCTGAATTCTGTTTCG+TGG + chr7_2:39762816-39762835 Msa1057660:CDS 40.0%
! TTCACGAATCGAAGCACTAA+AGG - chr7_2:39762920-39762939 None:intergenic 40.0%
AGTGCAAAAATCATGTGCTG+AGG - chr7_2:39763007-39763026 None:intergenic 40.0%
!! TTTGCACTCCAGTCTTATTC+CGG + chr7_2:39763019-39763038 Msa1057660:CDS 40.0%
TGTTAGTGTTAATGTCCACC+CGG + chr7_2:39763063-39763082 Msa1057660:CDS 40.0%
AAAACAAGCTTCTCAACTGC+CGG - chr7_2:39763124-39763143 None:intergenic 40.0%
! GACAAGAGTAGGTTTTTCCA+GGG - chr7_2:39763178-39763197 None:intergenic 40.0%
! TGACAAGAGTAGGTTTTTCC+AGG - chr7_2:39763179-39763198 None:intergenic 40.0%
AGAACTCACTTGTCTTGTGT+TGG + chr7_2:39763299-39763318 Msa1057660:CDS 40.0%
ATCTCATCTCGGTTTCAACT+TGG + chr7_2:39763332-39763351 Msa1057660:CDS 40.0%
TGAAGGGAACAATCTTGCAA+AGG + chr7_2:39763367-39763386 Msa1057660:three_prime_UTR 40.0%
TGTTGAGGATGAAGTAGGAG+TGG - chr7_2:39761400-39761419 None:intergenic 45.0%
! GACAGTGTTGAGGATGAAGT+AGG - chr7_2:39761405-39761424 None:intergenic 45.0%
TCAACACTGTCTTCCTCACA+CGG + chr7_2:39761414-39761433 Msa1057660:CDS 45.0%
!! GCATAAACTGAGCTTGGTGT+TGG - chr7_2:39761968-39761987 None:intergenic 45.0%
GGTTAGGCATAAACTGAGCT+TGG - chr7_2:39761974-39761993 None:intergenic 45.0%
! TGCAGCTGAGAGTATGTGAA+AGG - chr7_2:39762011-39762030 None:intergenic 45.0%
! CAATTGAGTCTTTTAGCCGG+TGG - chr7_2:39762059-39762078 None:intergenic 45.0%
CCGGCTAAAAGACTCAATTG+TGG + chr7_2:39762059-39762078 Msa1057660:CDS 45.0%
! ATTTTCTGCTTAGGCGCCAT+TGG - chr7_2:39762203-39762222 None:intergenic 45.0%
AATGGCGCCTAAGCAGAAAA+TGG + chr7_2:39762202-39762221 Msa1057660:CDS 45.0%
ATGGCGCCTAAGCAGAAAAT+GGG + chr7_2:39762203-39762222 Msa1057660:CDS 45.0%
ACTTATAGACGCCGGTAATC+CGG + chr7_2:39762310-39762329 Msa1057660:CDS 45.0%
GCTTCCCCAAAGGAGAAATT+TGG - chr7_2:39762370-39762389 None:intergenic 45.0%
! CTTTGAAAAGGCTTCCCCAA+AGG - chr7_2:39762380-39762399 None:intergenic 45.0%
!! CTTTGGGGAAGCCTTTTCAA+AGG + chr7_2:39762378-39762397 Msa1057660:CDS 45.0%
ATCTTGAGCAAGAGGCTAGT+TGG - chr7_2:39762482-39762501 None:intergenic 45.0%
! ACTAGCCTCTTGCTCAAGAT+TGG + chr7_2:39762482-39762501 Msa1057660:CDS 45.0%
AAGCACCAATCTTGAGCAAG+AGG - chr7_2:39762490-39762509 None:intergenic 45.0%
AGCTTCAAGCAATGCTTGGT+TGG - chr7_2:39762564-39762583 None:intergenic 45.0%
CAGGAGTTAGCACTAAGGAA+TGG + chr7_2:39762656-39762675 Msa1057660:CDS 45.0%
GAGTTAGCACTAAGGAATGG+TGG + chr7_2:39762659-39762678 Msa1057660:CDS 45.0%
AATGCAGTGATCTTGAGTGC+AGG - chr7_2:39762689-39762708 None:intergenic 45.0%
GCACTAAAGGCAGGTATGAA+GGG - chr7_2:39762907-39762926 None:intergenic 45.0%
AGCACTAAAGGCAGGTATGA+AGG - chr7_2:39762908-39762927 None:intergenic 45.0%
GGATAGGAGTTGTGATCGAA+CGG + chr7_2:39762970-39762989 Msa1057660:CDS 45.0%
CAAGCAAACCGGAATAAGAC+TGG - chr7_2:39763030-39763049 None:intergenic 45.0%
TCGATCATCTGAAGGACATC+CGG - chr7_2:39763085-39763104 None:intergenic 45.0%
AGAACCCTGATGACAAGAGT+AGG - chr7_2:39763189-39763208 None:intergenic 45.0%
TAGTAACTTCACAGAGTCGC+AGG + chr7_2:39763222-39763241 Msa1057660:CDS 45.0%
AGTTCTGCTTCTTCTCCACA+TGG - chr7_2:39763285-39763304 None:intergenic 45.0%
! CACTTGTCTTGTGTTGGCAA+AGG + chr7_2:39763305-39763324 Msa1057660:CDS 45.0%
! TGTCTTGTGTTGGCAAAGGA+AGG + chr7_2:39763309-39763328 Msa1057660:CDS 45.0%
GCAAAGGAAGGATCTCATCT+CGG + chr7_2:39763321-39763340 Msa1057660:CDS 45.0%
TTGGAGATGCTGAGAGTGAA+GGG + chr7_2:39763351-39763370 Msa1057660:exon 45.0%
! CTTGCGTTTTCTGCTGTGGA+TGG - chr7_2:39760666-39760685 None:intergenic 50.0%
CATCCACAGCAGAAAACGCA+AGG + chr7_2:39760664-39760683 Msa1057660:five_prime_UTR 50.0%
GTGTGAGGAAGACAGTGTTG+AGG - chr7_2:39761415-39761434 None:intergenic 50.0%
AATCTCAGCAGCAGTAGCAG+TGG - chr7_2:39761793-39761812 None:intergenic 50.0%
GTGGCTGAAGCTGAATCTCT+TGG - chr7_2:39762040-39762059 None:intergenic 50.0%
AGAGATTCAGCTTCAGCCAC+CGG + chr7_2:39762040-39762059 Msa1057660:CDS 50.0%
TGGCGCCTAAGCAGAAAATG+GGG + chr7_2:39762204-39762223 Msa1057660:CDS 50.0%
! GGGTTCCCCATTTTCTGCTT+AGG - chr7_2:39762212-39762231 None:intergenic 50.0%
AAGCAGAAAATGGGGAACCC+TGG + chr7_2:39762212-39762231 Msa1057660:CDS 50.0%
AAAATGGGGAACCCTGGAAG+CGG + chr7_2:39762218-39762237 Msa1057660:CDS 50.0%
! ATCGGCTCATCAGTTTCAGC+AGG + chr7_2:39762256-39762275 Msa1057660:CDS 50.0%
GCTGCAGAACTTATAGACGC+CGG + chr7_2:39762302-39762321 Msa1057660:CDS 50.0%
CCACAGCTTCAAGCAATGCT+TGG - chr7_2:39762568-39762587 None:intergenic 50.0%
! CCAAGCATTGCTTGAAGCTG+TGG + chr7_2:39762565-39762584 Msa1057660:CDS 50.0%
GCATTGCTTGAAGCTGTGGA+AGG + chr7_2:39762569-39762588 Msa1057660:CDS 50.0%
AGCTCGATTTCGTCGTGTGA+GGG - chr7_2:39762719-39762738 None:intergenic 50.0%
AAGCTCGATTTCGTCGTGTG+AGG - chr7_2:39762720-39762739 None:intergenic 50.0%
! CGAATCGAAGCACTAAAGGC+AGG - chr7_2:39762916-39762935 None:intergenic 50.0%
CGATCATCTGAAGGACATCC+GGG - chr7_2:39763084-39763103 None:intergenic 50.0%
TTCTATCCTGCGAGCGCAAA+CGG - chr7_2:39763150-39763169 None:intergenic 50.0%
!! TGTTTGGTGCAGAGGATTCC+TGG + chr7_2:39763250-39763269 Msa1057660:CDS 50.0%
CTTGGAGATGCTGAGAGTGA+AGG + chr7_2:39763350-39763369 Msa1057660:exon 50.0%
! CCTCCTTGCGTTTTCTGCTG+TGG - chr7_2:39760670-39760689 None:intergenic 55.0%
CCACAGCAGAAAACGCAAGG+AGG + chr7_2:39760667-39760686 Msa1057660:five_prime_UTR 55.0%
TTCCTCACCATCTGCAGCAG+AGG + chr7_2:39762177-39762196 Msa1057660:CDS 55.0%
AATATCCCGTGCGCGTGTTC+CGG - chr7_2:39762332-39762351 None:intergenic 55.0%
ACTGCTTCGCAATCGCGTAG+TGG - chr7_2:39762848-39762867 None:intergenic 55.0%
ACGCGATTGCGAAGCAGTTG+TGG + chr7_2:39762850-39762869 Msa1057660:CDS 55.0%
TCATCTGAAGGACATCCGGG+TGG - chr7_2:39763081-39763100 None:intergenic 55.0%
CGCAGGATAGAACACTTCCC+TGG + chr7_2:39763158-39763177 Msa1057660:CDS 55.0%
! AGAGTCGCAGGCAGAGTGTT+TGG + chr7_2:39763234-39763253 Msa1057660:CDS 55.0%
!! AGGCAGAGTGTTTGGTGCAG+AGG + chr7_2:39763242-39763261 Msa1057660:CDS 55.0%
TGGTGCAGAGGATTCCTGGT+AGG + chr7_2:39763254-39763273 Msa1057660:CDS 55.0%
GGTGCAGAGGATTCCTGGTA+GGG + chr7_2:39763255-39763274 Msa1057660:CDS 55.0%
GTGCAGAGGATTCCTGGTAG+GGG + chr7_2:39763256-39763275 Msa1057660:CDS 55.0%
TCCTGGTAGGGGATTCCATG+TGG + chr7_2:39763267-39763286 Msa1057660:CDS 55.0%
TCCACATGGAATCCCCTACC+AGG - chr7_2:39763271-39763290 None:intergenic 55.0%
TCTTCCTCACACGGTAGCGC+CGG + chr7_2:39761423-39761442 Msa1057660:CDS 60.0%
GCTTCCACCGATAGCACCAC+CGG + chr7_2:39761453-39761472 Msa1057660:CDS 60.0%
! CCATTGGCCTCTGCTGCAGA+TGG - chr7_2:39762187-39762206 None:intergenic 60.0%
CCATCTGCAGCAGAGGCCAA+TGG + chr7_2:39762184-39762203 Msa1057660:CDS 60.0%
! CGGTGGCGGCGAAGATGTAT+CGG + chr7_2:39762238-39762257 Msa1057660:CDS 60.0%
GTGCGCGTGTTCCGGATTAC+CGG - chr7_2:39762324-39762343 None:intergenic 60.0%
GGTAATCCGGAACACGCGCA+CGG + chr7_2:39762323-39762342 Msa1057660:CDS 60.0%
GTAATCCGGAACACGCGCAC+GGG + chr7_2:39762324-39762343 Msa1057660:CDS 60.0%
GGAACACGCGCACGGGATAT+TGG + chr7_2:39762331-39762350 Msa1057660:CDS 60.0%
TCGCAATCGCGTAGTGGCTG+CGG - chr7_2:39762842-39762861 None:intergenic 60.0%
TTTGAGCCGTTTGCGCTCGC+AGG + chr7_2:39763141-39763160 Msa1057660:CDS 60.0%
TTTGTTTGCCGCGGCTGCGC+CGG - chr7_2:39761475-39761494 None:intergenic 65.0%
GGCCTCTGCTGCAGATGGTG+AGG - chr7_2:39762182-39762201 None:intergenic 65.0%
ATGGGGAACCCTGGAAGCGG+TGG + chr7_2:39762221-39762240 Msa1057660:CDS 65.0%
ACGCGCACGGGATATTGGCG+CGG + chr7_2:39762336-39762355 Msa1057660:CDS 65.0%
! TCCTCACACGGTAGCGCCGG+AGG + chr7_2:39761426-39761445 Msa1057660:CDS 70.0%
! TCACACGGTAGCGCCGGAGG+CGG + chr7_2:39761429-39761448 Msa1057660:CDS 70.0%
!! ATCGGTGGAAGCGCCGCCTC+CGG - chr7_2:39761445-39761464 None:intergenic 70.0%
!! TGCGCCGGTGGTGCTATCGG+TGG - chr7_2:39761460-39761479 None:intergenic 70.0%
!! GGCTGCGCCGGTGGTGCTAT+CGG - chr7_2:39761463-39761482 None:intergenic 70.0%
GGGAACCCTGGAAGCGGTGG+CGG + chr7_2:39762224-39762243 Msa1057660:CDS 70.0%
CTTCGCCGCCACCGCTTCCA+GGG - chr7_2:39762232-39762251 None:intergenic 70.0%
TCTTCGCCGCCACCGCTTCC+AGG - chr7_2:39762233-39762252 None:intergenic 70.0%
GCCTCCGGCGCTACCGTGTG+AGG - chr7_2:39761430-39761449 None:intergenic 75.0%
TAGCACCACCGGCGCAGCCG+CGG + chr7_2:39761464-39761483 Msa1057660:CDS 75.0%
! GTTTGCCGCGGCTGCGCCGG+TGG - chr7_2:39761472-39761491 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 39760571 39763641 39760571 ID=Msa1057660;Name=Msa1057660
chr7_2 mRNA 39760571 39763641 39760571 ID=Msa1057660-mRNA-1;Parent=Msa1057660;Name=Msa1057660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=348|1|1|1|0|0.5|2|278|721
chr7_2 exon 39760571 39760927 39760571 ID=Msa1057660-mRNA-1:exon:7404;Parent=Msa1057660-mRNA-1
chr7_2 exon 39761207 39763641 39761207 ID=Msa1057660-mRNA-1:exon:7405;Parent=Msa1057660-mRNA-1
chr7_2 five_prime_UTR 39760571 39760918 39760571 ID=Msa1057660-mRNA-1:five_prime_utr;Parent=Msa1057660-mRNA-1
chr7_2 CDS 39760919 39760927 39760919 ID=Msa1057660-mRNA-1:cds;Parent=Msa1057660-mRNA-1
chr7_2 CDS 39761207 39763363 39761207 ID=Msa1057660-mRNA-1:cds;Parent=Msa1057660-mRNA-1
chr7_2 three_prime_UTR 39763364 39763641 39763364 ID=Msa1057660-mRNA-1:three_prime_utr;Parent=Msa1057660-mRNA-1
Gene Sequence

>Msa1057660

ATGAATGAGATGAAGGCTATGCCCTTACCTTTTGAAGAATACATAGGAAAAGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCACAACAGCAAGAACAGTTTTTACAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGTAGCGCCGGAGGCGGCGCTTCCACCGATAGCACCACCGGCGCAGCCGCGGCAAACAAAAACATACCACAAGTTGAAGGTAAAAGATGTGGAATGGAAGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCCATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTACTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCTTCTTCTGTTGTTGCTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGCTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAACACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCTCAGCTGCAAGAAAACCAAGAGATTCAGCTTCAGCCACCGGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCAAAGATACCGTTTTTGGATTCAGGTCAAGAGATGTTTCTCAAGAGGCAACAACAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGCCAATGGCGCCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTATCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTTTGGGGAAGCCTTTTCAAAGGGCTGCCTTTTATTTTAAGGAGGCATTTCAATTGCTTCTTCAATCAAATGTCAACAACAGCAACAGCAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGATATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTAAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACGACGAAATCGAGCTTAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAGATTCTGACACTTGAGTCTCTGAATTCTGTTTCGTGGCCGCAGCCACTACGCGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTTTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTCGTGAAGCAGCTAATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACGGATGCACCGTTTCCTCAGCACATGATTTTTGCACTCCAGTCTTATTCCGGTTTGCTTGAATCACTTGATGCTGTTAGTGTTAATGTCCACCCGGATGTCCTTCAGATGATCGAGAAATACTATCTTCAACCGGCAGTTGAGAAGCTTGTTTTGAGCCGTTTGCGCTCGCAGGATAGAACACTTCCCTGGAAAAACCTACTCTTGTCATCAGGGTTCTCGCCGTTGACGTTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTCCATGTGGAGAAGAAGCAGAACTCACTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA
Protein sequence

>Msa1057660

MNEMKAMPLPFEEYIGKGSSVVASSDSYLFSQQQEQFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAAAANKNIPQVEGKRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVVATTATAAEICSDFPFASRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSLDEKLPHQFVMNQHQAQFMPNPSLVFPFTYSQLQENQEIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLKRQQQHQQQLQLLPHHLQQRPMAPKQKMGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGNPEHAHGILARLNHQISPLGKPFQRAAFYFKEAFQLLLQSNVNNSNSNSFSPTSLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVSVNVHPDVLQMIEKYYLQPAVEKLVLSRLRSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC*