AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1057670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1057670 MtrunA17_Chr7g0230771 96.477 738 14 3 1 732 1 732 0.0 1449
Msa1057670 MtrunA17_Chr7g0230731 96.070 738 14 5 1 732 1 729 0.0 1439
Msa1057670 MtrunA17_Chr4g0012071 54.647 538 184 14 210 732 60 552 1.87e-177 518
Msa1057670 MtrunA17_Chr8g0373561 36.022 372 217 12 373 732 180 542 8.03e-60 211
Msa1057670 MtrunA17_Chr2g0306641 33.427 356 210 8 389 731 146 487 6.12e-43 162
Msa1057670 MtrunA17_Chr7g0224271 27.397 438 266 11 320 732 264 674 6.28e-37 147
Msa1057670 MtrunA17_Chr3g0110971 28.421 380 244 7 372 731 216 587 4.35e-36 144
Msa1057670 MtrunA17_Chr8g0376381 28.267 375 236 9 372 731 166 522 1.92e-35 141
Msa1057670 MtrunA17_Chr4g0038761 29.459 370 231 11 378 731 87 442 2.30e-33 134
Msa1057670 MtrunA17_Chr3g0101141 26.790 377 249 9 374 731 174 542 1.73e-32 132
Msa1057670 MtrunA17_Chr4g0039661 29.340 409 263 13 338 731 158 555 1.98e-29 123
Msa1057670 MtrunA17_Chr5g0445331 25.668 374 257 8 376 731 162 532 2.35e-29 123
Msa1057670 MtrunA17_Chr5g0424131 29.695 394 233 15 372 732 118 500 8.99e-29 121
Msa1057670 MtrunA17_Chr3g0125811 27.688 372 248 9 376 731 204 570 6.58e-28 119
Msa1057670 MtrunA17_Chr3g0114841 27.431 401 235 16 372 732 117 501 1.23e-27 117
Msa1057670 MtrunA17_Chr5g0447691 23.662 355 254 7 391 731 193 544 6.00e-27 115
Msa1057670 MtrunA17_Chr1g0159461 26.862 376 246 12 376 731 226 592 1.79e-25 111
Msa1057670 MtrunA17_Chr2g0319091 25.455 385 269 8 361 730 197 578 1.93e-25 111
Msa1057670 MtrunA17_Chr7g0245601 26.359 368 241 9 378 731 441 792 2.03e-25 112
Msa1057670 MtrunA17_Chr4g0076091 24.672 381 251 9 376 732 176 544 2.05e-25 111
Msa1057670 MtrunA17_Chr2g0290241 24.934 377 259 10 374 732 56 426 6.65e-25 108
Msa1057670 MtrunA17_Chr8g0383981 26.273 373 254 9 369 730 133 495 1.28e-24 108
Msa1057670 MtrunA17_Chr4g0057891 25.773 388 249 12 372 732 146 521 7.86e-24 106
Msa1057670 MtrunA17_Chr4g0057291 25.348 359 238 9 394 730 311 661 9.85e-24 106
Msa1057670 MtrunA17_Chr5g0403741 29.870 231 149 6 509 732 51 275 1.64e-23 101
Msa1057670 MtrunA17_Chr1g0183641 28.533 375 238 15 372 732 120 478 3.71e-22 100
Msa1057670 MtrunA17_Chr2g0294461 24.672 381 266 8 371 731 206 585 1.16e-19 93.6
Msa1057670 MtrunA17_Chr8g0357601 23.575 386 257 10 372 731 179 552 1.17e-19 93.6
Msa1057670 MtrunA17_Chr2g0328431 24.129 373 256 10 376 730 290 653 2.01e-19 93.2
Msa1057670 MtrunA17_Chr2g0294471 23.969 388 270 10 361 731 197 576 2.95e-19 92.0
Msa1057670 MtrunA17_Chr7g0270031 25.469 373 253 12 376 731 190 554 7.93e-19 90.9
Msa1057670 MtrunA17_Chr1g0200401 25.575 391 250 14 372 730 77 458 2.65e-18 88.6
Msa1057670 MtrunA17_Chr4g0031741 23.989 371 260 8 376 730 285 649 1.20e-17 87.4
Msa1057670 MtrunA17_Chr2g0328381 25.201 373 253 11 376 730 276 640 2.13e-17 86.7
Msa1057670 MtrunA17_Chr2g0328391 23.200 375 262 8 376 730 300 668 4.81e-17 85.5
Msa1057670 MtrunA17_Chr4g0031721 22.384 411 283 11 346 730 283 683 6.38e-17 85.1
Msa1057670 MtrunA17_Chr2g0328341 24.021 383 245 9 376 730 273 637 7.67e-17 84.7
Msa1057670 MtrunA17_Chr7g0238891 22.222 378 262 6 376 731 373 740 1.72e-16 84.0
Msa1057670 MtrunA17_Chr2g0328411 22.963 405 275 11 354 730 258 653 1.94e-16 83.6
Msa1057670 MtrunA17_Chr2g0329591 21.990 382 231 10 394 731 93 451 9.01e-16 80.5
Msa1057670 MtrunA17_Chr4g0031731 23.181 371 261 9 376 726 255 621 7.26e-15 78.6
Msa1057670 MtrunA17_Chr4g0031711 21.867 375 269 6 376 730 362 732 9.26e-15 78.2
Msa1057670 MtrunA17_Chr2g0328401 22.727 352 245 8 376 709 291 633 2.32e-14 77.0
Msa1057670 MtrunA17_Chr5g0396491 29.231 195 132 2 352 544 33 223 3.06e-14 75.9
Msa1057670 MtrunA17_Chr4g0038851 33.533 167 103 2 355 513 22 188 5.94e-14 75.1
Msa1057670 MtrunA17_Chr4g0031701 22.162 370 266 7 376 726 255 621 6.01e-14 75.5
Msa1057670 MtrunA17_Chr5g0401131 21.212 396 252 11 376 731 115 490 7.43e-13 71.6
Msa1057670 MtrunA17_Chr3g0085681 32.414 145 88 2 376 514 26 166 7.98e-13 71.2
Msa1057670 MtrunA17_Chr2g0328371 25.100 251 168 6 445 681 2 246 1.55e-11 65.5
Msa1057670 MtrunA17_Chr2g0328361 24.129 373 232 14 376 730 275 614 2.86e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1057670 AT4G00150.1 57.474 388 137 10 348 732 193 555 3.27e-138 418
Msa1057670 AT2G45160.1 48.069 466 201 16 290 732 193 640 7.75e-121 376
Msa1057670 AT3G60630.1 44.773 507 200 16 269 732 154 623 4.00e-113 355
Msa1057670 AT4G36710.1 33.511 376 220 13 373 731 123 485 5.27e-55 196
Msa1057670 AT2G01570.1 30.108 372 237 9 372 731 221 581 4.43e-34 138
Msa1057670 AT5G66770.1 28.000 400 251 13 354 731 200 584 6.48e-32 132
Msa1057670 AT3G03450.1 27.851 377 244 10 372 731 180 545 2.86e-31 129
Msa1057670 AT5G17490.1 28.763 372 241 11 372 731 157 516 4.66e-31 128
Msa1057670 AT2G04890.1 26.404 356 236 8 391 731 69 413 7.92e-30 123
Msa1057670 AT5G41920.1 25.187 401 277 8 338 731 16 400 1.13e-29 122
Msa1057670 AT3G50650.1 29.781 366 230 10 385 731 185 542 1.68e-29 124
Msa1057670 AT1G14920.1 27.056 377 242 9 372 731 169 529 2.75e-29 123
Msa1057670 AT3G54220.1 27.348 362 246 8 378 730 296 649 1.22e-28 122
Msa1057670 AT5G48150.1 24.930 357 248 8 391 731 138 490 1.42e-28 120
Msa1057670 AT5G48150.4 24.930 357 248 8 391 731 138 490 1.42e-28 120
Msa1057670 AT5G48150.2 24.930 357 248 8 391 731 138 490 1.42e-28 120
Msa1057670 AT5G48150.3 24.930 357 248 8 391 731 138 490 1.42e-28 120
Msa1057670 AT1G66350.1 26.415 371 248 10 372 732 152 507 4.74e-28 119
Msa1057670 AT1G50600.3 24.324 370 263 7 376 731 160 526 1.11e-27 118
Msa1057670 AT1G50600.1 24.324 370 263 7 376 731 231 597 3.46e-27 117
Msa1057670 AT1G50600.2 24.324 370 263 7 376 731 235 601 3.48e-27 117
Msa1057670 AT1G21450.1 25.123 406 266 11 354 731 198 593 1.06e-26 115
Msa1057670 AT4G08250.1 29.752 363 229 13 387 730 121 476 1.42e-26 114
Msa1057670 AT4G17230.1 26.178 382 241 8 376 731 159 525 2.12e-26 114
Msa1057670 AT4G17230.2 26.178 382 241 8 376 731 159 525 2.12e-26 114
Msa1057670 AT5G59450.1 23.810 420 279 11 342 731 190 598 1.34e-23 106
Msa1057670 AT1G55580.1 24.465 327 221 6 421 731 129 445 4.38e-19 91.3
Msa1057670 AT1G63100.1 25.532 376 221 15 395 730 272 628 5.94e-19 92.0
Msa1057670 AT1G63100.2 25.532 376 221 15 395 730 297 653 7.72e-19 91.7
Msa1057670 AT1G07520.1 21.333 375 266 9 380 730 323 692 4.53e-18 89.4
Msa1057670 AT1G07520.3 21.333 375 266 9 380 730 324 693 4.62e-18 89.4
Msa1057670 AT1G07520.2 21.123 374 268 8 380 730 159 528 6.56e-18 88.2
Msa1057670 AT1G07520.4 21.123 374 268 8 380 730 159 528 6.56e-18 88.2
Msa1057670 AT3G46600.1 22.762 391 274 9 364 731 194 579 1.77e-17 87.0
Msa1057670 AT3G46600.3 22.762 391 274 9 364 731 162 547 4.98e-17 85.5
Msa1057670 AT3G46600.2 22.849 372 266 8 376 731 5 371 9.03e-17 83.2
Msa1057670 AT1G07530.1 23.545 378 256 9 376 730 397 764 1.22e-16 84.7
Msa1057670 AT1G50420.1 30.412 194 115 5 372 554 54 238 1.27e-15 80.9
Msa1057670 AT4G37650.1 22.335 394 257 10 376 731 147 529 2.19e-15 80.1
Msa1057670 AT5G52510.1 23.711 388 248 12 376 731 269 640 2.62e-13 73.9
Msa1057670 AT2G29065.1 21.485 377 272 7 376 730 253 627 3.98e-13 73.2

Find 162 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGAAGAACTGAAATT+AGG 0.187840 7_2:-39775775 None:intergenic
GGAAAAGGTGTGTTAGATTT+TGG 0.194202 7_2:+39775142 Msa1057670:CDS
GGCAATTGAGAAGCTTGTTT+TGG 0.238119 7_2:+39777055 Msa1057670:CDS
AAGTTACCATTTGAAGAAAT+AGG 0.249425 7_2:-39775646 None:intergenic
TTCAATATTGAAATTGATAA+TGG 0.254255 7_2:+39775495 Msa1057670:CDS
CATGAAAACCACATCAATTT+AGG 0.258965 7_2:-39777566 None:intergenic
AGTCTCTGAATTCTGTTTCA+TGG 0.261651 7_2:+39776748 Msa1057670:CDS
ATGGCGCCTAAGCAGAAAAT+AGG 0.262146 7_2:+39776132 Msa1057670:CDS
ATTTGTTCTGATTTCCCTTT+TGG 0.265105 7_2:+39775724 Msa1057670:CDS
TCTTCGCCGCCACCGCTTCC+AGG 0.266115 7_2:-39776159 None:intergenic
ATGCTAATTTGTCTATGTTT+AGG 0.271802 7_2:+39777390 Msa1057670:three_prime_UTR
AATTCCGAAGATACCCTTCT+TGG 0.278051 7_2:+39776008 Msa1057670:CDS
GCTTCCCCATAGGAGAAATT+TGG 0.291304 7_2:-39776296 None:intergenic
GCATAAACTGAGCTTGGTTT+TGG 0.318676 7_2:-39775879 None:intergenic
GTAGGAGTGGTTTGTTGATT+TGG 0.323080 7_2:-39775298 None:intergenic
AGATATTGAAGATGCATCTA+TGG 0.323147 7_2:+39775519 Msa1057670:CDS
GTTTATGCCTAACCCTAGTT+TGG 0.334769 7_2:+39775894 Msa1057670:CDS
GAAGATACCCTTCTTGGATT+CGG 0.340738 7_2:+39776014 Msa1057670:CDS
CAACAAGATGTTGAATTCAA+TGG 0.350188 7_2:+39775586 Msa1057670:CDS
CTTGTGAAGAACTGAAATTA+GGG 0.351845 7_2:-39775774 None:intergenic
AAAACAAGCTTCTCAATTGC+CGG 0.355848 7_2:-39777053 None:intergenic
AAGATACCCTTCTTGGATTC+GGG 0.361865 7_2:+39776015 Msa1057670:CDS
TGTTTGGTGCAGAGGATTCC+TGG 0.364499 7_2:+39777182 Msa1057670:CDS
TTTGCACTCCAGTCTTATTC+CGG 0.364854 7_2:+39776951 Msa1057670:CDS
AGTTACCATTTGAAGAAATA+GGG 0.368741 7_2:-39775645 None:intergenic
TCACACGGCAGCGCCGGCGG+CGG 0.386625 7_2:+39775343 Msa1057670:CDS
CGGGTCAAGAGATGTTTCTT+AGG 0.388186 7_2:+39776034 Msa1057670:CDS
CTTGACCCTATTTCTTCAAA+TGG 0.389273 7_2:+39775640 Msa1057670:CDS
GGAACACGCGCAAGGGATAT+TGG 0.392114 7_2:+39776260 Msa1057670:CDS
CAATCACCAAATTTCTCCTA+TGG 0.395643 7_2:+39776290 Msa1057670:CDS
AAATATGTGGAATGGAAGAT+TGG 0.410842 7_2:+39775431 Msa1057670:CDS
AAATTTGCAAACTGCAGAAC+AGG 0.415407 7_2:-39776462 None:intergenic
AATATCCCTTGCGCGTGTTC+CGG 0.419926 7_2:-39776258 None:intergenic
ACTTATAGACGCCGGTAGTC+CGG 0.423899 7_2:+39776239 Msa1057670:CDS
TTTGTTATTTCCACTTATGA+TGG 0.424153 7_2:+39777414 Msa1057670:three_prime_UTR
ATCGGTAGAAGCGCCGCCGC+CGG 0.426995 7_2:-39775356 None:intergenic
AGAGTCGCAGGCAGAGTGTT+TGG 0.429838 7_2:+39777166 Msa1057670:CDS
ATGTTTACTTCCATCATAAG+TGG 0.439594 7_2:-39777424 None:intergenic
CCACAGCTTCAAGCAATGCT+TGG 0.439953 7_2:-39776494 None:intergenic
GGCTGCGCCGGTGGTGCTAT+CGG 0.443162 7_2:-39775374 None:intergenic
ACTAGCCTCTTGCTCAAGAT+TGG 0.445518 7_2:+39776411 Msa1057670:CDS
GCCGCCGGCGCTGCCGTGTG+AGG 0.446390 7_2:-39775341 None:intergenic
TCGATCATCTGAAGTACATC+CGG 0.446716 7_2:-39777014 None:intergenic
ATCTCATCTCGGTTTCAACT+TGG 0.447156 7_2:+39777264 Msa1057670:CDS
AGGAGTTAGCACTCAGGAAT+GGG 0.448803 7_2:+39776586 Msa1057670:CDS
TAATTTGAGAGAGAGCAAAT+AGG 0.452415 7_2:-39776813 None:intergenic
TTTCCTATGTATTCTTCAAA+GGG 0.452726 7_2:-39775124 None:intergenic
GTGGCTGAAGCTGAATCTCT+TGG 0.455539 7_2:-39775951 None:intergenic
TTTGTTTGCCGCGGCTGCGC+CGG 0.461598 7_2:-39775386 None:intergenic
TTCATCCCTCTACTACCAAA+AGG 0.463150 7_2:-39775739 None:intergenic
TCACAAGTTTCACTTTCTCA+TGG 0.465348 7_2:+39775790 Msa1057670:CDS
TTTGGGCCGTTTGGGTTCGC+AGG 0.468143 7_2:+39777073 Msa1057670:CDS
TGTCTTAATTAGCAACTGAA+TGG 0.470172 7_2:+39777458 Msa1057670:three_prime_UTR
GGTGCAGAGGATTCCTGGTA+GGG 0.470286 7_2:+39777187 Msa1057670:CDS
ATCAAGTGATTCAAGCAAAC+CGG 0.470386 7_2:-39776970 None:intergenic
TGGCGCCTAAGCAGAAAATA+GGG 0.470572 7_2:+39776133 Msa1057670:CDS
GGGAACCCTGGAAGCGGTGG+CGG 0.474306 7_2:+39776153 Msa1057670:CDS
GGTTAGGCATAAACTGAGCT+TGG 0.478491 7_2:-39775885 None:intergenic
TTCTATCCTGCGAACCCAAA+CGG 0.480883 7_2:-39777079 None:intergenic
AGGGAAAATTGTTGCTATGC+GGG 0.481377 7_2:+39775235 Msa1057670:CDS
CCATTGGCCTCTGCTGCAGA+TGG 0.481891 7_2:-39776113 None:intergenic
CTCGATTTCGTCGTGGTGTG+AGG 0.482198 7_2:-39776646 None:intergenic
TTTGAAGAATACATAGGAAA+AGG 0.483271 7_2:+39775127 Msa1057670:CDS
CGCAGGATAGAACACTTCCT+TGG 0.483347 7_2:+39777090 Msa1057670:CDS
GCCTAAAATTGTCGTAACAT+TGG 0.487648 7_2:+39776881 Msa1057670:CDS
AGCTTCAAGCAATGCTTGGT+TGG 0.488113 7_2:-39776490 None:intergenic
CGCTTGTCTTGTGTTGGCAA+AGG 0.491242 7_2:+39777237 Msa1057670:CDS
AAAATCATATGTTGAGGAAA+CGG 0.493724 7_2:-39776930 None:intergenic
AATATGTGGAATGGAAGATT+GGG 0.495001 7_2:+39775432 Msa1057670:CDS
AGAATTCGCTTGTCTTGTGT+TGG 0.495542 7_2:+39777231 Msa1057670:CDS
TGGTGCAGAGGATTCCTGGT+AGG 0.496504 7_2:+39777186 Msa1057670:CDS
AGCACTAAAGGCAGGTATGA+AGG 0.498213 7_2:-39776837 None:intergenic
ATGTAATGTAACAAAATGAA+TGG 0.503493 7_2:-39774698 None:intergenic
ATCTTGAGCAAGAGGCTAGT+TGG 0.505941 7_2:-39776408 None:intergenic
AATCACCAAATTTCTCCTAT+GGG 0.509811 7_2:+39776291 Msa1057670:CDS
GAATCCAAGAAGGGTATCTT+CGG 0.510787 7_2:-39776012 None:intergenic
CAGGAGTTAGCACTCAGGAA+TGG 0.511848 7_2:+39776585 Msa1057670:CDS
CCATCTGCAGCAGAGGCCAA+TGG 0.514076 7_2:+39776113 Msa1057670:CDS
CAAGTTGAAGGTAAAATATG+TGG 0.514862 7_2:+39775418 Msa1057670:CDS
TGAAGGTAAAATATGTGGAA+TGG 0.515935 7_2:+39775423 Msa1057670:CDS
CGAGAAATACTATCTGCAAC+CGG 0.516860 7_2:+39777034 Msa1057670:CDS
ACAATGGTCTTCATTTATGC+AGG 0.517675 7_2:+39776566 Msa1057670:CDS
GTGCAGAGGATTCCTGGTAG+GGG 0.518621 7_2:+39777188 Msa1057670:CDS
TCCTCACACGGCAGCGCCGG+CGG 0.519299 7_2:+39775340 Msa1057670:CDS
TATGTATTCTTCAAAGGGCA+AGG 0.521239 7_2:-39775119 None:intergenic
CCAAGCATTGCTTGAAGCTG+TGG 0.524919 7_2:+39776494 Msa1057670:CDS
TTGCGCGTGTTCCGGACTAC+CGG 0.525156 7_2:-39776250 None:intergenic
CTTCGCCGCCACCGCTTCCA+GGG 0.526440 7_2:-39776158 None:intergenic
GTTTGCCGCGGCTGCGCCGG+TGG 0.527393 7_2:-39775383 None:intergenic
TCGCAATCACGTAGTGGCTG+CGG 0.530202 7_2:-39776771 None:intergenic
TCATCCCTCTACTACCAAAA+GGG 0.532544 7_2:-39775738 None:intergenic
TGTCTTGTGTTGGCAAAGGA+AGG 0.534777 7_2:+39777241 Msa1057670:CDS
GAATGATCTTGATCTTGACT+TGG 0.536034 7_2:-39775475 None:intergenic
CGATCATCTGAAGTACATCC+GGG 0.536848 7_2:-39777013 None:intergenic
TTGGAGATGCTGAGAGTGAA+GGG 0.536935 7_2:+39777283 Msa1057670:exon
GACAGTGTTGAGGATGAAGT+AGG 0.538311 7_2:-39775316 None:intergenic
CTCTTGACCCGAATCCAAGA+AGG 0.539089 7_2:-39776022 None:intergenic
CAAGCAAACCGGAATAAGAC+TGG 0.539954 7_2:-39776959 None:intergenic
ATGAAGAAGAAGAATGAATG+AGG 0.544065 7_2:+39774815 Msa1057670:exon
GATATTGAAGATGCATCTAT+GGG 0.546979 7_2:+39775520 Msa1057670:CDS
TAGTAACTTCACAGAGTCGC+AGG 0.548006 7_2:+39777154 Msa1057670:CDS
CTTGGAGATGCTGAGAGTGA+AGG 0.548025 7_2:+39777282 Msa1057670:exon
AAGCACCAATCTTGAGCAAG+AGG 0.549041 7_2:-39776416 None:intergenic
CTTTGAAAAGGCTTCCCCAT+AGG 0.549307 7_2:-39776306 None:intergenic
CAAGTTTCACTTTCTCATGG+TGG 0.549648 7_2:+39775793 Msa1057670:CDS
TAGCACCACCGGCGCAGCCG+CGG 0.551893 7_2:+39775378 Msa1057670:CDS
TTGCCCTTTGAAGAATACAT+AGG 0.553220 7_2:+39775121 Msa1057670:CDS
TTCCTCACCATCTGCAGCAG+AGG 0.553713 7_2:+39776106 Msa1057670:CDS
ACGTGATTGCGAAGCAGTTG+TGG 0.554312 7_2:+39776782 Msa1057670:CDS
GTCGGCACATCAGTTTCAGC+AGG 0.555323 7_2:+39776185 Msa1057670:CDS
TGTTGAGGATGAAGTAGGAG+TGG 0.560505 7_2:-39775311 None:intergenic
TCCTGGTAGGGGATTTCATG+TGG 0.561432 7_2:+39777199 Msa1057670:CDS
GTCAAGAGATGTTTCTTAGG+AGG 0.562943 7_2:+39776037 Msa1057670:CDS
AGGCAGAGTGTTTGGTGCAG+AGG 0.564913 7_2:+39777174 Msa1057670:CDS
GCACTAAAGGCAGGTATGAA+GGG 0.565237 7_2:-39776836 None:intergenic
GGCCTCTGCTGCAGATGGTG+AGG 0.565284 7_2:-39776108 None:intergenic
CGGTGGCGGCGAAGATGTGT+CGG 0.566754 7_2:+39776167 Msa1057670:CDS
TCTTCCTCACACGGCAGCGC+CGG 0.568950 7_2:+39775337 Msa1057670:CDS
GAGAATCTGAAGCAATATGC+TGG 0.570600 7_2:+39776684 Msa1057670:CDS
AATCTCAGCAGCAGTAGCAG+TGG 0.572943 7_2:-39775704 None:intergenic
TCGATTTCGTCGTGGTGTGA+GGG 0.574007 7_2:-39776645 None:intergenic
TCCACATGAAATCCCCTACC+AGG 0.574086 7_2:-39777200 None:intergenic
TTAACAAATCGAAGCACTAA+AGG 0.575268 7_2:-39776849 None:intergenic
GGTAGTCCGGAACACGCGCA+AGG 0.576781 7_2:+39776252 Msa1057670:CDS
CAAATCGAAGCACTAAAGGC+AGG 0.580272 7_2:-39776845 None:intergenic
AAGCAGAAAATAGGGAACCC+TGG 0.580825 7_2:+39776141 Msa1057670:CDS
GCATTGCTTGAAGCTGTGGA+AGG 0.584725 7_2:+39776498 Msa1057670:CDS
TAGCATTGAATCATAAGTCA+AGG 0.587103 7_2:-39777373 None:intergenic
TGCAGCTGAGAATATGTGAA+AGG 0.595086 7_2:-39775922 None:intergenic
GCAAAGGAAGGATCTCATCT+CGG 0.596929 7_2:+39777253 Msa1057670:CDS
AAAACCTACTCTTGTCGTCA+GGG 0.598538 7_2:+39777114 Msa1057670:CDS
GCTTCTACCGATAGCACCAC+CGG 0.599672 7_2:+39775367 Msa1057670:CDS
GGATAGGAGTTGTGATCGAA+CGG 0.600755 7_2:+39776902 Msa1057670:CDS
GGAGTTAGCACTCAGGAATG+GGG 0.606694 7_2:+39776587 Msa1057670:CDS
AAAATAGGGAACCCTGGAAG+CGG 0.610638 7_2:+39776147 Msa1057670:CDS
AAATTGTCGTAACATTGGAT+AGG 0.615531 7_2:+39776886 Msa1057670:CDS
TCAACACTGTCTTCCTCACA+CGG 0.617431 7_2:+39775328 Msa1057670:CDS
AGAACCCTGACGACAAGAGT+AGG 0.620221 7_2:-39777118 None:intergenic
AGTGGTAGCAACAACAGAAG+AGG 0.620742 7_2:-39775686 None:intergenic
ATAGGGAACCCTGGAAGCGG+TGG 0.622112 7_2:+39776150 Msa1057670:CDS
ATGTATTCTTCAAAGGGCAA+GGG 0.626187 7_2:-39775118 None:intergenic
TTGCGTGCAGCATATAAAAG+TGG 0.629877 7_2:-39774569 None:intergenic
CATCCACAGAAGAAAACACA+AGG 0.631022 7_2:+39774593 Msa1057670:five_prime_UTR
TCTTGACCCGAATCCAAGAA+GGG 0.632079 7_2:-39776021 None:intergenic
ATCACCAAATTTCTCCTATG+GGG 0.632427 7_2:+39776292 Msa1057670:CDS
ACGCGCAAGGGATATTGGCG+CGG 0.634995 7_2:+39776265 Msa1057670:CDS
TGAAGGGAATAATCTTGCAA+AGG 0.638607 7_2:+39777299 Msa1057670:three_prime_UTR
TGGTTCATAACAAACTGATG+AGG 0.638887 7_2:-39775859 None:intergenic
GTAGTCCGGAACACGCGCAA+GGG 0.641709 7_2:+39776253 Msa1057670:CDS
AATGCAGTGATCTTGAGTGC+AGG 0.644744 7_2:-39776615 None:intergenic
GAGGGAAAATTGTTGCTATG+CGG 0.647727 7_2:+39775234 Msa1057670:CDS
GTGAAGTTACTAAACGTCAA+CGG 0.647933 7_2:-39777143 None:intergenic
GAGTTAGCACTCAGGAATGG+GGG 0.668622 7_2:+39776588 Msa1057670:CDS
ACTGCTTCGCAATCACGTAG+TGG 0.670419 7_2:-39776777 None:intergenic
TTATGCAGGAGTTAGCACTC+AGG 0.678645 7_2:+39776580 Msa1057670:CDS
AACTGAGCTCGATTTCGTCG+TGG 0.682607 7_2:-39776653 None:intergenic
TGTCTGTGTCAATGTCCACC+CGG 0.687910 7_2:+39776995 Msa1057670:CDS
GCTGCAGAACTTATAGACGC+CGG 0.689078 7_2:+39776231 Msa1057670:CDS
CCAGCTAAAAGACTCAATTG+TGG 0.702219 7_2:+39775973 Msa1057670:CDS
TCATCTGAAGTACATCCGGG+TGG 0.714970 7_2:-39777010 None:intergenic
CCACAGAAGAAAACACAAGG+AGG 0.717864 7_2:+39774596 Msa1057670:five_prime_UTR
GTGTGAGGAAGACAGTGTTG+AGG 0.771629 7_2:-39775326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAACAAAAACAAAAT+GGG - chr7_2:39775035-39775054 None:intergenic 15.0%
!! TTCAATATTGAAATTGATAA+TGG + chr7_2:39775495-39775514 Msa1057670:CDS 15.0%
!!! ATAACATAGTTATGTGTTTT+TGG + chr7_2:39774660-39774679 Msa1057670:five_prime_UTR 20.0%
!! ATGTAATGTAACAAAATGAA+TGG - chr7_2:39774701-39774720 None:intergenic 20.0%
!!! TGTTATTGTTGTTATGAAAA+TGG + chr7_2:39774868-39774887 Msa1057670:intron 20.0%
!!! GTTATTGTTGTTATGAAAAT+GGG + chr7_2:39774869-39774888 Msa1057670:intron 20.0%
!! CAACAAAAACAAAAACAAAA+TGG - chr7_2:39775036-39775055 None:intergenic 20.0%
!! TGTTTGAAAAAAAATTGTGT+TGG + chr7_2:39775068-39775087 Msa1057670:intron 20.0%
!!! ATTCAATGGTTTTAGTTTTA+TGG + chr7_2:39775600-39775619 Msa1057670:CDS 20.0%
!!! CATATAATAGATTTTGACAT+TGG + chr7_2:39776534-39776553 Msa1057670:CDS 20.0%
!!! ATTTGTTTTGCTTTGAATAT+TGG + chr7_2:39777509-39777528 Msa1057670:three_prime_UTR 20.0%
!!! TGTTTTTTTTTGTCTGAACT+AGG + chr7_2:39774929-39774948 Msa1057670:intron 25.0%
!! AAAATCAAGATCTGAAGTTA+AGG - chr7_2:39774966-39774985 None:intergenic 25.0%
! TTTCCTATGTATTCTTCAAA+GGG - chr7_2:39775127-39775146 None:intergenic 25.0%
!! TTTTCCTATGTATTCTTCAA+AGG - chr7_2:39775128-39775147 None:intergenic 25.0%
! TTTGAAGAATACATAGGAAA+AGG + chr7_2:39775127-39775146 Msa1057670:CDS 25.0%
! TCAAAAACAACAACAGAATT+GGG - chr7_2:39775268-39775287 None:intergenic 25.0%
!!! TTTGTTGATTTGGTTTTTTG+AGG - chr7_2:39775291-39775310 None:intergenic 25.0%
! AGTTACCATTTGAAGAAATA+GGG - chr7_2:39775648-39775667 None:intergenic 25.0%
! AAGTTACCATTTGAAGAAAT+AGG - chr7_2:39775649-39775668 None:intergenic 25.0%
!! TATAATTGATCAGCTTTTCA+AGG + chr7_2:39776209-39776228 Msa1057670:CDS 25.0%
!!! ATAGATTTTGACATTGGTTT+TGG + chr7_2:39776540-39776559 Msa1057670:CDS 25.0%
! AAAATCATATGTTGAGGAAA+CGG - chr7_2:39776933-39776952 None:intergenic 25.0%
!! ATGCTAATTTGTCTATGTTT+AGG + chr7_2:39777390-39777409 Msa1057670:three_prime_UTR 25.0%
!!! TTTGTTATTTCCACTTATGA+TGG + chr7_2:39777414-39777433 Msa1057670:three_prime_UTR 25.0%
TGTTGTGTTTGAGTGAAAAA+AGG + chr7_2:39774766-39774785 Msa1057670:five_prime_UTR 30.0%
ATGAAGAAGAAGAATGAATG+AGG + chr7_2:39774815-39774834 Msa1057670:exon 30.0%
!! GTTGTTGTTGATTTAGATGA+AGG + chr7_2:39775090-39775109 Msa1057670:intron 30.0%
GTCAAAAACAACAACAGAAT+TGG - chr7_2:39775269-39775288 None:intergenic 30.0%
! AAAAACATACCACAAGTTGA+AGG + chr7_2:39775406-39775425 Msa1057670:CDS 30.0%
! CATATTTTACCTTCAACTTG+TGG - chr7_2:39775418-39775437 None:intergenic 30.0%
! CAAGTTGAAGGTAAAATATG+TGG + chr7_2:39775418-39775437 Msa1057670:CDS 30.0%
TGAAGGTAAAATATGTGGAA+TGG + chr7_2:39775423-39775442 Msa1057670:CDS 30.0%
AAATATGTGGAATGGAAGAT+TGG + chr7_2:39775431-39775450 Msa1057670:CDS 30.0%
AATATGTGGAATGGAAGATT+GGG + chr7_2:39775432-39775451 Msa1057670:CDS 30.0%
AGATATTGAAGATGCATCTA+TGG + chr7_2:39775519-39775538 Msa1057670:CDS 30.0%
GATATTGAAGATGCATCTAT+GGG + chr7_2:39775520-39775539 Msa1057670:CDS 30.0%
! TTAAGCAAGCTTTTACAAGT+TGG + chr7_2:39775544-39775563 Msa1057670:CDS 30.0%
CAACAAGATGTTGAATTCAA+TGG + chr7_2:39775586-39775605 Msa1057670:CDS 30.0%
! ATTTGTTCTGATTTCCCTTT+TGG + chr7_2:39775724-39775743 Msa1057670:CDS 30.0%
CTTGTGAAGAACTGAAATTA+GGG - chr7_2:39775777-39775796 None:intergenic 30.0%
ACTTGTGAAGAACTGAAATT+AGG - chr7_2:39775778-39775797 None:intergenic 30.0%
TGAAAGGAAAAACCAAACTA+GGG - chr7_2:39775909-39775928 None:intergenic 30.0%
AATCACCAAATTTCTCCTAT+GGG + chr7_2:39776291-39776310 Msa1057670:CDS 30.0%
!!! AAGGGCTGCTTTTTATTTTA+AGG + chr7_2:39776326-39776345 Msa1057670:CDS 30.0%
TAATTTGAGAGAGAGCAAAT+AGG - chr7_2:39776816-39776835 None:intergenic 30.0%
! TTAACAAATCGAAGCACTAA+AGG - chr7_2:39776852-39776871 None:intergenic 30.0%
! TCCAATGTTACGACAATTTT+AGG - chr7_2:39776885-39776904 None:intergenic 30.0%
AAATTGTCGTAACATTGGAT+AGG + chr7_2:39776886-39776905 Msa1057670:CDS 30.0%
AGTGCAAAAATCATATGTTG+AGG - chr7_2:39776939-39776958 None:intergenic 30.0%
! TAGCATTGAATCATAAGTCA+AGG - chr7_2:39777376-39777395 None:intergenic 30.0%
ATGTTTACTTCCATCATAAG+TGG - chr7_2:39777427-39777446 None:intergenic 30.0%
TGTCTTAATTAGCAACTGAA+TGG + chr7_2:39777458-39777477 Msa1057670:three_prime_UTR 30.0%
ATGTATTCTTCAAAGGGCAA+GGG - chr7_2:39775121-39775140 None:intergenic 35.0%
TATGTATTCTTCAAAGGGCA+AGG - chr7_2:39775122-39775141 None:intergenic 35.0%
! TTGCCCTTTGAAGAATACAT+AGG + chr7_2:39775121-39775140 Msa1057670:CDS 35.0%
!! GGAAAAGGTGTGTTAGATTT+TGG + chr7_2:39775142-39775161 Msa1057670:CDS 35.0%
! AGCAAGAACAGTTTTTGCAA+AGG + chr7_2:39775209-39775228 Msa1057670:CDS 35.0%
! AAGAACAGTTTTTGCAAAGG+TGG + chr7_2:39775212-39775231 Msa1057670:CDS 35.0%
GAATGATCTTGATCTTGACT+TGG - chr7_2:39775478-39775497 None:intergenic 35.0%
! CTTGACCCTATTTCTTCAAA+TGG + chr7_2:39775640-39775659 Msa1057670:CDS 35.0%
!! ATTTCCCTTTTGGTAGTAGA+GGG + chr7_2:39775734-39775753 Msa1057670:CDS 35.0%
TCACAAGTTTCACTTTCTCA+TGG + chr7_2:39775790-39775809 Msa1057670:CDS 35.0%
TGGTTCATAACAAACTGATG+AGG - chr7_2:39775862-39775881 None:intergenic 35.0%
GTGAAAGGAAAAACCAAACT+AGG - chr7_2:39775910-39775929 None:intergenic 35.0%
CAATCACCAAATTTCTCCTA+TGG + chr7_2:39776290-39776309 Msa1057670:CDS 35.0%
ATCACCAAATTTCTCCTATG+GGG + chr7_2:39776292-39776311 Msa1057670:CDS 35.0%
! TAAAAAGCAGCCCTTTGAAA+AGG - chr7_2:39776321-39776340 None:intergenic 35.0%
!!! GGCTGCTTTTTATTTTAAGG+AGG + chr7_2:39776329-39776348 Msa1057670:CDS 35.0%
AAATTTGCAAACTGCAGAAC+AGG - chr7_2:39776465-39776484 None:intergenic 35.0%
!!! GATTTTGACATTGGTTTTGG+TGG + chr7_2:39776543-39776562 Msa1057670:CDS 35.0%
ACAATGGTCTTCATTTATGC+AGG + chr7_2:39776566-39776585 Msa1057670:CDS 35.0%
AGTCTCTGAATTCTGTTTCA+TGG + chr7_2:39776748-39776767 Msa1057670:CDS 35.0%
GCCTAAAATTGTCGTAACAT+TGG + chr7_2:39776881-39776900 Msa1057670:CDS 35.0%
ATCAAGTGATTCAAGCAAAC+CGG - chr7_2:39776973-39776992 None:intergenic 35.0%
AAAACAAGCTTCTCAATTGC+CGG - chr7_2:39777056-39777075 None:intergenic 35.0%
!! GCAATTGAGAAGCTTGTTTT+GGG + chr7_2:39777056-39777075 Msa1057670:CDS 35.0%
GTGAAGTTACTAAACGTCAA+CGG - chr7_2:39777146-39777165 None:intergenic 35.0%
TGAAGGGAATAATCTTGCAA+AGG + chr7_2:39777299-39777318 Msa1057670:three_prime_UTR 35.0%
TTGCGTGCAGCATATAAAAG+TGG - chr7_2:39774572-39774591 None:intergenic 40.0%
! CTTGTGTTTTCTTCTGTGGA+TGG - chr7_2:39774595-39774614 None:intergenic 40.0%
CATCCACAGAAGAAAACACA+AGG + chr7_2:39774593-39774612 Msa1057670:five_prime_UTR 40.0%
! AACAGTTTTTGCAAAGGTGG+AGG + chr7_2:39775215-39775234 Msa1057670:CDS 40.0%
! ACAGTTTTTGCAAAGGTGGA+GGG + chr7_2:39775216-39775235 Msa1057670:CDS 40.0%
GAGGGAAAATTGTTGCTATG+CGG + chr7_2:39775234-39775253 Msa1057670:CDS 40.0%
AGGGAAAATTGTTGCTATGC+GGG + chr7_2:39775235-39775254 Msa1057670:CDS 40.0%
!! GTAGGAGTGGTTTGTTGATT+TGG - chr7_2:39775301-39775320 None:intergenic 40.0%
!! TGGTATGTTTTTGTTTGCCG+CGG - chr7_2:39775398-39775417 None:intergenic 40.0%
!! GATTTCCCTTTTGGTAGTAG+AGG + chr7_2:39775733-39775752 Msa1057670:CDS 40.0%
TCATCCCTCTACTACCAAAA+GGG - chr7_2:39775741-39775760 None:intergenic 40.0%
TTCATCCCTCTACTACCAAA+AGG - chr7_2:39775742-39775761 None:intergenic 40.0%
CAAGTTTCACTTTCTCATGG+TGG + chr7_2:39775793-39775812 Msa1057670:CDS 40.0%
! GCATAAACTGAGCTTGGTTT+TGG - chr7_2:39775882-39775901 None:intergenic 40.0%
GTTTATGCCTAACCCTAGTT+TGG + chr7_2:39775894-39775913 Msa1057670:CDS 40.0%
GGAAAAACCAAACTAGGGTT+AGG - chr7_2:39775904-39775923 None:intergenic 40.0%
TGCAGCTGAGAATATGTGAA+AGG - chr7_2:39775925-39775944 None:intergenic 40.0%
!! CAATTGAGTCTTTTAGCTGG+TGG - chr7_2:39775973-39775992 None:intergenic 40.0%
! CCACAATTGAGTCTTTTAGC+TGG - chr7_2:39775976-39775995 None:intergenic 40.0%
CCAGCTAAAAGACTCAATTG+TGG + chr7_2:39775973-39775992 Msa1057670:CDS 40.0%
AATTCCGAAGATACCCTTCT+TGG + chr7_2:39776008-39776027 Msa1057670:CDS 40.0%
!! GAATCCAAGAAGGGTATCTT+CGG - chr7_2:39776015-39776034 None:intergenic 40.0%
GAAGATACCCTTCTTGGATT+CGG + chr7_2:39776014-39776033 Msa1057670:CDS 40.0%
AAGATACCCTTCTTGGATTC+GGG + chr7_2:39776015-39776034 Msa1057670:CDS 40.0%
GTCAAGAGATGTTTCTTAGG+AGG + chr7_2:39776037-39776056 Msa1057670:CDS 40.0%
! TATGGGGAAGCCTTTTCAAA+GGG + chr7_2:39776308-39776327 Msa1057670:CDS 40.0%
!!! ACATTGGTTTTGGTGGACAA+TGG + chr7_2:39776550-39776569 Msa1057670:CDS 40.0%
! GAGAATCTGAAGCAATATGC+TGG + chr7_2:39776684-39776703 Msa1057670:CDS 40.0%
!! TTTGCACTCCAGTCTTATTC+CGG + chr7_2:39776951-39776970 Msa1057670:CDS 40.0%
! TCGATCATCTGAAGTACATC+CGG - chr7_2:39777017-39777036 None:intergenic 40.0%
CGAGAAATACTATCTGCAAC+CGG + chr7_2:39777034-39777053 Msa1057670:CDS 40.0%
!! GGCAATTGAGAAGCTTGTTT+TGG + chr7_2:39777055-39777074 Msa1057670:CDS 40.0%
! GACAAGAGTAGGTTTTTCCA+AGG - chr7_2:39777110-39777129 None:intergenic 40.0%
AAAAACCTACTCTTGTCGTC+AGG + chr7_2:39777113-39777132 Msa1057670:CDS 40.0%
AAAACCTACTCTTGTCGTCA+GGG + chr7_2:39777114-39777133 Msa1057670:CDS 40.0%
AGAATTCGCTTGTCTTGTGT+TGG + chr7_2:39777231-39777250 Msa1057670:CDS 40.0%
ATCTCATCTCGGTTTCAACT+TGG + chr7_2:39777264-39777283 Msa1057670:CDS 40.0%
! CCTCCTTGTGTTTTCTTCTG+TGG - chr7_2:39774599-39774618 None:intergenic 45.0%
CCACAGAAGAAAACACAAGG+AGG + chr7_2:39774596-39774615 Msa1057670:five_prime_UTR 45.0%
TGTTGAGGATGAAGTAGGAG+TGG - chr7_2:39775314-39775333 None:intergenic 45.0%
! GACAGTGTTGAGGATGAAGT+AGG - chr7_2:39775319-39775338 None:intergenic 45.0%
TCAACACTGTCTTCCTCACA+CGG + chr7_2:39775328-39775347 Msa1057670:CDS 45.0%
AGTGGTAGCAACAACAGAAG+AGG - chr7_2:39775689-39775708 None:intergenic 45.0%
GGTTAGGCATAAACTGAGCT+TGG - chr7_2:39775888-39775907 None:intergenic 45.0%
TCTTGACCCGAATCCAAGAA+GGG - chr7_2:39776024-39776043 None:intergenic 45.0%
CGGGTCAAGAGATGTTTCTT+AGG + chr7_2:39776034-39776053 Msa1057670:CDS 45.0%
! ATTTTCTGCTTAGGCGCCAT+TGG - chr7_2:39776132-39776151 None:intergenic 45.0%
ATGGCGCCTAAGCAGAAAAT+AGG + chr7_2:39776132-39776151 Msa1057670:CDS 45.0%
TGGCGCCTAAGCAGAAAATA+GGG + chr7_2:39776133-39776152 Msa1057670:CDS 45.0%
! GGGTTCCCTATTTTCTGCTT+AGG - chr7_2:39776141-39776160 None:intergenic 45.0%
AAGCAGAAAATAGGGAACCC+TGG + chr7_2:39776141-39776160 Msa1057670:CDS 45.0%
AAAATAGGGAACCCTGGAAG+CGG + chr7_2:39776147-39776166 Msa1057670:CDS 45.0%
GCTTCCCCATAGGAGAAATT+TGG - chr7_2:39776299-39776318 None:intergenic 45.0%
! CTTTGAAAAGGCTTCCCCAT+AGG - chr7_2:39776309-39776328 None:intergenic 45.0%
! CTATGGGGAAGCCTTTTCAA+AGG + chr7_2:39776307-39776326 Msa1057670:CDS 45.0%
ATCTTGAGCAAGAGGCTAGT+TGG - chr7_2:39776411-39776430 None:intergenic 45.0%
! ACTAGCCTCTTGCTCAAGAT+TGG + chr7_2:39776411-39776430 Msa1057670:CDS 45.0%
AAGCACCAATCTTGAGCAAG+AGG - chr7_2:39776419-39776438 None:intergenic 45.0%
AGCTTCAAGCAATGCTTGGT+TGG - chr7_2:39776493-39776512 None:intergenic 45.0%
TTATGCAGGAGTTAGCACTC+AGG + chr7_2:39776580-39776599 Msa1057670:CDS 45.0%
AGGAGTTAGCACTCAGGAAT+GGG + chr7_2:39776586-39776605 Msa1057670:CDS 45.0%
AATGCAGTGATCTTGAGTGC+AGG - chr7_2:39776618-39776637 None:intergenic 45.0%
GCACTAAAGGCAGGTATGAA+GGG - chr7_2:39776839-39776858 None:intergenic 45.0%
AGCACTAAAGGCAGGTATGA+AGG - chr7_2:39776840-39776859 None:intergenic 45.0%
! CAAATCGAAGCACTAAAGGC+AGG - chr7_2:39776848-39776867 None:intergenic 45.0%
GGATAGGAGTTGTGATCGAA+CGG + chr7_2:39776902-39776921 Msa1057670:CDS 45.0%
CAAGCAAACCGGAATAAGAC+TGG - chr7_2:39776962-39776981 None:intergenic 45.0%
! CGATCATCTGAAGTACATCC+GGG - chr7_2:39777016-39777035 None:intergenic 45.0%
!!! AAGCTTGTTTTGGGCCGTTT+GGG + chr7_2:39777065-39777084 Msa1057670:CDS 45.0%
TTCTATCCTGCGAACCCAAA+CGG - chr7_2:39777082-39777101 None:intergenic 45.0%
TAGTAACTTCACAGAGTCGC+AGG + chr7_2:39777154-39777173 Msa1057670:CDS 45.0%
! TGTCTTGTGTTGGCAAAGGA+AGG + chr7_2:39777241-39777260 Msa1057670:CDS 45.0%
GCAAAGGAAGGATCTCATCT+CGG + chr7_2:39777253-39777272 Msa1057670:CDS 45.0%
TTGGAGATGCTGAGAGTGAA+GGG + chr7_2:39777283-39777302 Msa1057670:exon 45.0%
GTGTGAGGAAGACAGTGTTG+AGG - chr7_2:39775329-39775348 None:intergenic 50.0%
AATCTCAGCAGCAGTAGCAG+TGG - chr7_2:39775707-39775726 None:intergenic 50.0%
GTGGCTGAAGCTGAATCTCT+TGG - chr7_2:39775954-39775973 None:intergenic 50.0%
CTCTTGACCCGAATCCAAGA+AGG - chr7_2:39776025-39776044 None:intergenic 50.0%
GCTGCAGAACTTATAGACGC+CGG + chr7_2:39776231-39776250 Msa1057670:CDS 50.0%
ACTTATAGACGCCGGTAGTC+CGG + chr7_2:39776239-39776258 Msa1057670:CDS 50.0%
AATATCCCTTGCGCGTGTTC+CGG - chr7_2:39776261-39776280 None:intergenic 50.0%
CCACAGCTTCAAGCAATGCT+TGG - chr7_2:39776497-39776516 None:intergenic 50.0%
! CCAAGCATTGCTTGAAGCTG+TGG + chr7_2:39776494-39776513 Msa1057670:CDS 50.0%
GCATTGCTTGAAGCTGTGGA+AGG + chr7_2:39776498-39776517 Msa1057670:CDS 50.0%
CAGGAGTTAGCACTCAGGAA+TGG + chr7_2:39776585-39776604 Msa1057670:CDS 50.0%
GGAGTTAGCACTCAGGAATG+GGG + chr7_2:39776587-39776606 Msa1057670:CDS 50.0%
GAGTTAGCACTCAGGAATGG+GGG + chr7_2:39776588-39776607 Msa1057670:CDS 50.0%
TCGATTTCGTCGTGGTGTGA+GGG - chr7_2:39776648-39776667 None:intergenic 50.0%
AACTGAGCTCGATTTCGTCG+TGG - chr7_2:39776656-39776675 None:intergenic 50.0%
ACTGCTTCGCAATCACGTAG+TGG - chr7_2:39776780-39776799 None:intergenic 50.0%
ACGTGATTGCGAAGCAGTTG+TGG + chr7_2:39776782-39776801 Msa1057670:CDS 50.0%
TGTCTGTGTCAATGTCCACC+CGG + chr7_2:39776995-39777014 Msa1057670:CDS 50.0%
! TCATCTGAAGTACATCCGGG+TGG - chr7_2:39777013-39777032 None:intergenic 50.0%
!!! GAAGCTTGTTTTGGGCCGTT+TGG + chr7_2:39777064-39777083 Msa1057670:CDS 50.0%
CGCAGGATAGAACACTTCCT+TGG + chr7_2:39777090-39777109 Msa1057670:CDS 50.0%
AGAACCCTGACGACAAGAGT+AGG - chr7_2:39777121-39777140 None:intergenic 50.0%
!! TGTTTGGTGCAGAGGATTCC+TGG + chr7_2:39777182-39777201 Msa1057670:CDS 50.0%
TCCTGGTAGGGGATTTCATG+TGG + chr7_2:39777199-39777218 Msa1057670:CDS 50.0%
TCCACATGAAATCCCCTACC+AGG - chr7_2:39777203-39777222 None:intergenic 50.0%
! CGCTTGTCTTGTGTTGGCAA+AGG + chr7_2:39777237-39777256 Msa1057670:CDS 50.0%
CTTGGAGATGCTGAGAGTGA+AGG + chr7_2:39777282-39777301 Msa1057670:exon 50.0%
GCTTCTACCGATAGCACCAC+CGG + chr7_2:39775367-39775386 Msa1057670:CDS 55.0%
TTCCTCACCATCTGCAGCAG+AGG + chr7_2:39776106-39776125 Msa1057670:CDS 55.0%
GTCGGCACATCAGTTTCAGC+AGG + chr7_2:39776185-39776204 Msa1057670:CDS 55.0%
GGAACACGCGCAAGGGATAT+TGG + chr7_2:39776260-39776279 Msa1057670:CDS 55.0%
CTCGATTTCGTCGTGGTGTG+AGG - chr7_2:39776649-39776668 None:intergenic 55.0%
TCGCAATCACGTAGTGGCTG+CGG - chr7_2:39776774-39776793 None:intergenic 55.0%
! AGAGTCGCAGGCAGAGTGTT+TGG + chr7_2:39777166-39777185 Msa1057670:CDS 55.0%
!! AGGCAGAGTGTTTGGTGCAG+AGG + chr7_2:39777174-39777193 Msa1057670:CDS 55.0%
TGGTGCAGAGGATTCCTGGT+AGG + chr7_2:39777186-39777205 Msa1057670:CDS 55.0%
GGTGCAGAGGATTCCTGGTA+GGG + chr7_2:39777187-39777206 Msa1057670:CDS 55.0%
GTGCAGAGGATTCCTGGTAG+GGG + chr7_2:39777188-39777207 Msa1057670:CDS 55.0%
! CCATTGGCCTCTGCTGCAGA+TGG - chr7_2:39776116-39776135 None:intergenic 60.0%
CCATCTGCAGCAGAGGCCAA+TGG + chr7_2:39776113-39776132 Msa1057670:CDS 60.0%
ATAGGGAACCCTGGAAGCGG+TGG + chr7_2:39776150-39776169 Msa1057670:CDS 60.0%
TTGCGCGTGTTCCGGACTAC+CGG - chr7_2:39776253-39776272 None:intergenic 60.0%
GTAGTCCGGAACACGCGCAA+GGG + chr7_2:39776253-39776272 Msa1057670:CDS 60.0%
ACGCGCAAGGGATATTGGCG+CGG + chr7_2:39776265-39776284 Msa1057670:CDS 60.0%
! TTTGGGCCGTTTGGGTTCGC+AGG + chr7_2:39777073-39777092 Msa1057670:CDS 60.0%
TCTTCCTCACACGGCAGCGC+CGG + chr7_2:39775337-39775356 Msa1057670:CDS 65.0%
TTTGTTTGCCGCGGCTGCGC+CGG - chr7_2:39775389-39775408 None:intergenic 65.0%
GGCCTCTGCTGCAGATGGTG+AGG - chr7_2:39776111-39776130 None:intergenic 65.0%
! CGGTGGCGGCGAAGATGTGT+CGG + chr7_2:39776167-39776186 Msa1057670:CDS 65.0%
GGTAGTCCGGAACACGCGCA+AGG + chr7_2:39776252-39776271 Msa1057670:CDS 65.0%
!! ATCGGTAGAAGCGCCGCCGC+CGG - chr7_2:39775359-39775378 None:intergenic 70.0%
!! GGCTGCGCCGGTGGTGCTAT+CGG - chr7_2:39775377-39775396 None:intergenic 70.0%
GGGAACCCTGGAAGCGGTGG+CGG + chr7_2:39776153-39776172 Msa1057670:CDS 70.0%
CTTCGCCGCCACCGCTTCCA+GGG - chr7_2:39776161-39776180 None:intergenic 70.0%
TCTTCGCCGCCACCGCTTCC+AGG - chr7_2:39776162-39776181 None:intergenic 70.0%
! TCCTCACACGGCAGCGCCGG+CGG + chr7_2:39775340-39775359 Msa1057670:CDS 75.0%
TAGCACCACCGGCGCAGCCG+CGG + chr7_2:39775378-39775397 Msa1057670:CDS 75.0%
!!! TCACACGGCAGCGCCGGCGG+CGG + chr7_2:39775343-39775362 Msa1057670:CDS 80.0%
! GTTTGCCGCGGCTGCGCCGG+TGG - chr7_2:39775386-39775405 None:intergenic 80.0%
! GCCGCCGGCGCTGCCGTGTG+AGG - chr7_2:39775344-39775363 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 39774518 39777573 39774518 ID=Msa1057670;Name=Msa1057670
chr7_2 mRNA 39774518 39777573 39774518 ID=Msa1057670-mRNA-1;Parent=Msa1057670;Name=Msa1057670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=310|1|1|1|0|0.5|2|278|732
chr7_2 exon 39774518 39774836 39774518 ID=Msa1057670-mRNA-1:exon:7402;Parent=Msa1057670-mRNA-1
chr7_2 exon 39775106 39777573 39775106 ID=Msa1057670-mRNA-1:exon:7403;Parent=Msa1057670-mRNA-1
chr7_2 five_prime_UTR 39774518 39774827 39774518 ID=Msa1057670-mRNA-1:five_prime_utr;Parent=Msa1057670-mRNA-1
chr7_2 CDS 39774828 39774836 39774828 ID=Msa1057670-mRNA-1:cds;Parent=Msa1057670-mRNA-1
chr7_2 CDS 39775106 39777295 39775106 ID=Msa1057670-mRNA-1:cds;Parent=Msa1057670-mRNA-1
chr7_2 three_prime_UTR 39777296 39777573 39777296 ID=Msa1057670-mRNA-1:three_prime_utr;Parent=Msa1057670-mRNA-1
Gene Sequence

>Msa1057670

ATGAATGAGATGAAGGCTATGCCCTTGCCCTTTGAAGAATACATAGGAAAAGGTGTGTTAGATTTTGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCACAACAGCAAGAACAGTTTTTGCAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGCAGCGCCGGCGGCGGCGCTTCTACCGATAGCACCACCGGCGCAGCCGCGGCAAACAAAAACATACCACAAGTTGAAGGTAAAATATGTGGAATGGAAGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCAATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTGCTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCCTCTTCTGTTGTTGCTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGGTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATATTCTCAGCTGCAAGAAAACCAAGAGATTCAGCTTCAGCCACCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAGCAGCAACATCAGCAGCAGCTTCAATTGCTTCCTCACCATCTGCAGCAGAGGCCAATGGCGCCTAAGCAGAAAATAGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTGTCGGCACATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAGTCCGGAACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTGCTTCTTCAATCAAATGTTAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGACATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTCAGGAATGGGGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACCACGACGAAATCGAGCTCAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAGATTCTGACACTTGAGTCTCTGAATTCTGTTTCATGGCCGCAGCCACTACGTGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTCTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTTGTTAAGCAGCTCATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACGGATGCACCGTTTCCTCAACATATGATTTTTGCACTCCAGTCTTATTCCGGTTTGCTTGAATCACTTGATGCTGTCTGTGTCAATGTCCACCCGGATGTACTTCAGATGATCGAGAAATACTATCTGCAACCGGCAATTGAGAAGCTTGTTTTGGGCCGTTTGGGTTCGCAGGATAGAACACTTCCTTGGAAAAACCTACTCTTGTCGTCAGGGTTCTCTCCGTTGACGTTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTTCATGTGGAGAAGAAGCAGAATTCGCTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA
Protein sequence

>Msa1057670

MNEMKAMPLPFEEYIGKGVLDFGSSVVASSDSYLFSQQQEQFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAAAANKNIPQVEGKICGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVVATTATAAEICSDFPFGSRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSLDEKLPHQFVMNQNQAQFMPNPSLVFPFTYSQLQENQEIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQHQQQQHQQQLQLLPHHLQQRPMAPKQKIGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGSPEHAQGILARLNHQISPMGKPFQRAAFYFKEALQLLLQSNVNNSNNNSFSPTSLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSLSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVCVNVHPDVLQMIEKYYLQPAIEKLVLGRLGSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC*