Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057830 | XP_013442483.1 | 93.352 | 361 | 7 | 2 | 1 | 344 | 1 | 361 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057830 | sp|Q9M202|ZAT9_ARATH | 43.068 | 339 | 131 | 10 | 1 | 330 | 1 | 286 | 3.22e-67 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057830 | A0A072THU2 | 93.352 | 361 | 7 | 2 | 1 | 344 | 1 | 361 | 0.0 | 687 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1057830 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057830 | MtrunA17_Chr7g0231181 | 93.352 | 361 | 7 | 2 | 1 | 344 | 1 | 361 | 0.0 | 687 |
| Msa1057830 | MtrunA17_Chr4g0012691 | 44.039 | 411 | 125 | 14 | 1 | 342 | 2 | 376 | 1.65e-61 | 201 |
| Msa1057830 | MtrunA17_Chr4g0056091 | 39.665 | 358 | 153 | 12 | 1 | 338 | 1 | 315 | 9.70e-60 | 194 |
| Msa1057830 | MtrunA17_Chr5g0399261 | 34.328 | 268 | 125 | 9 | 1 | 245 | 5 | 244 | 7.05e-34 | 125 |
| Msa1057830 | MtrunA17_Chr4g0012791 | 27.119 | 413 | 167 | 17 | 3 | 323 | 12 | 382 | 1.52e-24 | 103 |
| Msa1057830 | MtrunA17_Chr4g0061301 | 38.312 | 154 | 52 | 4 | 213 | 325 | 340 | 491 | 5.99e-24 | 102 |
| Msa1057830 | MtrunA17_Chr4g0018761 | 27.077 | 325 | 149 | 12 | 6 | 321 | 9 | 254 | 2.11e-20 | 89.0 |
| Msa1057830 | MtrunA17_Chr7g0263131 | 38.776 | 147 | 72 | 8 | 196 | 327 | 6 | 149 | 2.63e-20 | 86.7 |
| Msa1057830 | MtrunA17_Chr1g0182161 | 41.026 | 117 | 54 | 4 | 223 | 325 | 39 | 154 | 5.09e-20 | 85.9 |
| Msa1057830 | MtrunA17_Chr1g0207451 | 37.956 | 137 | 64 | 6 | 208 | 324 | 64 | 199 | 1.83e-19 | 86.3 |
| Msa1057830 | MtrunA17_Chr2g0327901 | 34.014 | 147 | 71 | 5 | 186 | 327 | 4 | 129 | 8.40e-18 | 79.0 |
| Msa1057830 | MtrunA17_Chr3g0134711 | 39.506 | 162 | 70 | 6 | 193 | 328 | 57 | 216 | 1.26e-17 | 80.9 |
| Msa1057830 | MtrunA17_Chr5g0425411 | 43.137 | 102 | 38 | 3 | 222 | 303 | 118 | 219 | 5.56e-17 | 79.3 |
| Msa1057830 | MtrunA17_Chr7g0263121 | 39.474 | 114 | 57 | 5 | 223 | 325 | 44 | 156 | 9.94e-17 | 77.0 |
| Msa1057830 | MtrunA17_Chr7g0222831 | 40.367 | 109 | 53 | 4 | 189 | 291 | 6 | 108 | 2.39e-15 | 73.6 |
| Msa1057830 | MtrunA17_Chr1g0152661 | 32.796 | 186 | 80 | 7 | 150 | 320 | 38 | 193 | 2.86e-15 | 74.3 |
| Msa1057830 | MtrunA17_Chr1g0182181 | 37.795 | 127 | 61 | 6 | 223 | 334 | 35 | 158 | 7.17e-15 | 71.6 |
| Msa1057830 | MtrunA17_Chr4g0027991 | 32.530 | 166 | 57 | 4 | 223 | 335 | 113 | 276 | 1.13e-14 | 73.6 |
| Msa1057830 | MtrunA17_Chr3g0079061 | 27.365 | 296 | 170 | 8 | 6 | 292 | 8 | 267 | 2.20e-14 | 72.4 |
| Msa1057830 | MtrunA17_Chr4g0043071 | 52.459 | 61 | 21 | 2 | 269 | 324 | 441 | 498 | 7.91e-14 | 72.4 |
| Msa1057830 | MtrunA17_Chr1g0212561 | 42.683 | 82 | 38 | 2 | 215 | 291 | 41 | 118 | 2.24e-13 | 68.2 |
| Msa1057830 | MtrunA17_Chr3g0079131 | 23.750 | 320 | 159 | 10 | 2 | 292 | 4 | 267 | 2.11e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057830 | AT3G60580.1 | 43.068 | 339 | 131 | 10 | 1 | 330 | 1 | 286 | 3.28e-68 | 216 |
| Msa1057830 | AT2G45120.1 | 43.804 | 347 | 141 | 11 | 1 | 330 | 1 | 310 | 9.70e-61 | 197 |
| Msa1057830 | AT1G02030.1 | 37.237 | 333 | 131 | 10 | 2 | 328 | 3 | 263 | 2.76e-42 | 148 |
| Msa1057830 | AT4G16610.1 | 37.356 | 174 | 78 | 6 | 2 | 165 | 3 | 155 | 2.49e-21 | 90.9 |
| Msa1057830 | AT3G53600.1 | 38.760 | 129 | 66 | 4 | 223 | 341 | 49 | 174 | 5.18e-21 | 89.4 |
| Msa1057830 | AT3G19580.1 | 30.556 | 216 | 80 | 7 | 148 | 327 | 64 | 245 | 9.81e-21 | 90.9 |
| Msa1057830 | AT3G19580.2 | 30.556 | 216 | 80 | 7 | 148 | 327 | 64 | 245 | 9.81e-21 | 90.9 |
| Msa1057830 | AT2G37430.1 | 41.880 | 117 | 52 | 5 | 222 | 325 | 46 | 159 | 2.38e-18 | 82.0 |
| Msa1057830 | AT5G61470.1 | 43.750 | 80 | 45 | 0 | 219 | 298 | 224 | 303 | 5.50e-18 | 83.6 |
| Msa1057830 | AT2G28200.1 | 34.416 | 154 | 45 | 5 | 223 | 324 | 115 | 264 | 6.95e-18 | 83.2 |
| Msa1057830 | AT5G43170.1 | 35.915 | 142 | 45 | 3 | 150 | 291 | 45 | 140 | 1.30e-16 | 77.4 |
| Msa1057830 | AT5G03510.1 | 35.616 | 146 | 52 | 4 | 221 | 324 | 116 | 261 | 3.37e-16 | 78.2 |
| Msa1057830 | AT1G49900.1 | 47.887 | 71 | 35 | 1 | 223 | 291 | 750 | 820 | 3.98e-16 | 80.1 |
| Msa1057830 | AT1G49900.1 | 44.000 | 75 | 36 | 1 | 223 | 291 | 193 | 267 | 2.06e-13 | 72.0 |
| Msa1057830 | AT4G35280.1 | 36.719 | 128 | 57 | 4 | 222 | 335 | 161 | 278 | 5.45e-16 | 77.8 |
| Msa1057830 | AT2G28710.1 | 48.235 | 85 | 38 | 3 | 208 | 291 | 21 | 100 | 8.10e-16 | 74.3 |
| Msa1057830 | AT3G49930.1 | 39.831 | 118 | 45 | 4 | 223 | 328 | 94 | 197 | 5.30e-15 | 73.6 |
| Msa1057830 | AT5G67450.1 | 41.304 | 92 | 29 | 2 | 223 | 291 | 97 | 186 | 6.27e-15 | 73.9 |
| Msa1057830 | AT2G17180.1 | 37.190 | 121 | 49 | 3 | 222 | 325 | 147 | 257 | 9.88e-15 | 73.9 |
| Msa1057830 | AT5G59820.1 | 53.623 | 69 | 29 | 2 | 223 | 291 | 39 | 104 | 1.03e-14 | 71.6 |
| Msa1057830 | AT1G26610.1 | 59.016 | 61 | 20 | 2 | 267 | 324 | 397 | 455 | 1.03e-14 | 75.1 |
| Msa1057830 | AT3G46090.1 | 43.478 | 115 | 40 | 7 | 223 | 318 | 40 | 148 | 1.27e-14 | 71.2 |
| Msa1057830 | AT1G27730.1 | 33.758 | 157 | 45 | 4 | 148 | 291 | 48 | 158 | 1.67e-14 | 72.4 |
| Msa1057830 | AT3G46080.1 | 47.368 | 76 | 28 | 3 | 223 | 291 | 37 | 107 | 3.67e-14 | 70.1 |
| Msa1057830 | AT5G04340.1 | 41.176 | 85 | 31 | 2 | 223 | 291 | 89 | 170 | 2.62e-13 | 69.3 |
| Msa1057830 | AT3G46070.1 | 42.308 | 78 | 40 | 2 | 219 | 291 | 31 | 108 | 1.27e-12 | 65.9 |
Find 44 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAAAGGGTCTTAATTA+TGG | 0.258113 | 7_2:-40486608 | Msa1057830:CDS |
| ACGAGACGAATGCTTCTCTT+TGG | 0.315457 | 7_2:+40486572 | None:intergenic |
| AATTGAAATCGAAAGATCTT+TGG | 0.317289 | 7_2:-40486083 | Msa1057830:CDS |
| TTCAACAATGGAAGAGCATT+GGG | 0.379429 | 7_2:-40486764 | Msa1057830:CDS |
| AAAAGAACACATGTGATTCA+TGG | 0.392470 | 7_2:-40485797 | Msa1057830:CDS |
| AGATGATGACGTTGATGAAA+AGG | 0.399134 | 7_2:-40486621 | Msa1057830:CDS |
| CTAACTTCATCATCATCAAT+TGG | 0.412597 | 7_2:+40485698 | None:intergenic |
| ACAAAATGCAACATCTTCTT+CGG | 0.417782 | 7_2:+40486207 | None:intergenic |
| TTCAAATCTTATCAAGCATT+GGG | 0.429788 | 7_2:-40485965 | Msa1057830:CDS |
| GCATCAGAAACCGAACTAAC+AGG | 0.435004 | 7_2:+40486235 | None:intergenic |
| AAAATTGGAACTGTTGTTGA+TGG | 0.443856 | 7_2:+40485770 | None:intergenic |
| GTTCAAATCTTATCAAGCAT+TGG | 0.444666 | 7_2:-40485966 | Msa1057830:CDS |
| CTTCTTGCTTTGTAACAAGA+AGG | 0.459791 | 7_2:+40486714 | None:intergenic |
| TGAACATGAACCTGTTAGTT+CGG | 0.475159 | 7_2:-40486245 | Msa1057830:CDS |
| GATGATGACGTTGATGAAAA+GGG | 0.491203 | 7_2:-40486620 | Msa1057830:CDS |
| CAACTAGGAAAAGATCCAAA+AGG | 0.492623 | 7_2:-40486360 | Msa1057830:CDS |
| GATTCTTCCACCGTTACGTT+CGG | 0.493128 | 7_2:+40485911 | None:intergenic |
| TGCAGTTGTCGAGAGACAAA+TGG | 0.497909 | 7_2:-40486180 | Msa1057830:CDS |
| CTTCAACAATGGAAGAGCAT+TGG | 0.506483 | 7_2:-40486765 | Msa1057830:CDS |
| AAAGAAAGTTCATGAATGTC+CGG | 0.517315 | 7_2:-40485864 | Msa1057830:CDS |
| AATAATAATAAAGTACGTAA+AGG | 0.519533 | 7_2:-40486019 | Msa1057830:CDS |
| TTTAATTCGGGTCAAGCACT+TGG | 0.525463 | 7_2:-40485827 | Msa1057830:CDS |
| AACTAGGAAAAGATCCAAAA+GGG | 0.532786 | 7_2:-40486359 | Msa1057830:CDS |
| TGCTATAGAAGCTTCAACAA+TGG | 0.537062 | 7_2:-40486776 | Msa1057830:CDS |
| AAAGGGTGTGGAAAATTCGC+GGG | 0.538446 | 7_2:-40486342 | Msa1057830:CDS |
| TGATGACGACGAAGCTGAAG+AGG | 0.541596 | 7_2:-40486116 | Msa1057830:CDS |
| GGAAAAGATCCAAAAGGGTG+TGG | 0.547103 | 7_2:-40486354 | Msa1057830:CDS |
| AATTCGGGTCAAGCACTTGG+TGG | 0.548431 | 7_2:-40485824 | Msa1057830:CDS |
| ACAGAACTTGTATCCACTTG+TGG | 0.549151 | 7_2:+40486530 | None:intergenic |
| AGCTTCAAAACTAAGTTGAA+CGG | 0.549932 | 7_2:+40486676 | None:intergenic |
| TCATCATCATCAATTGGAGC+AGG | 0.554191 | 7_2:+40485704 | None:intergenic |
| AAAAGGGTGTGGAAAATTCG+CGG | 0.559838 | 7_2:-40486343 | Msa1057830:CDS |
| ACTAAGTTGAACGGTTCGCG+AGG | 0.577547 | 7_2:+40486685 | None:intergenic |
| GAAGATTAAACCGAACGTAA+CGG | 0.594837 | 7_2:-40485921 | Msa1057830:CDS |
| TTAAATACTCGAAAACATAC+CGG | 0.600102 | 7_2:+40485845 | None:intergenic |
| ATAATAAAGTACGTAAAGGA+AGG | 0.605908 | 7_2:-40486015 | Msa1057830:CDS |
| CAACAATGGAAGAGCATTGG+GGG | 0.606035 | 7_2:-40486762 | Msa1057830:CDS |
| AAATGAACAATATGAAGATG+TGG | 0.609717 | 7_2:-40486149 | Msa1057830:CDS |
| CATCATCAATTGGAGCAGGA+AGG | 0.614177 | 7_2:+40485708 | None:intergenic |
| GATTAAACCGAACGTAACGG+TGG | 0.624973 | 7_2:-40485918 | Msa1057830:CDS |
| TCAACAATGGAAGAGCATTG+GGG | 0.634990 | 7_2:-40486763 | Msa1057830:CDS |
| AAATCTTATCAAGCATTGGG+TGG | 0.639931 | 7_2:-40485962 | Msa1057830:CDS |
| AACAATGGAAGAGCATTGGG+GGG | 0.702590 | 7_2:-40486761 | Msa1057830:CDS |
| TCTGATGAAGATGATGAAGA+CGG | 0.708239 | 7_2:+40486644 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAGTACGTAA+AGG | - | chr7_2:40486427-40486446 | Msa1057830:intron | 15.0% |
| !! | AATAATAATAAAGTACGTAA+AGG | - | chr7_2:40486427-40486446 | Msa1057830:intron | 15.0% |
| !!! | TTTTAACAAGAATGATTCTT+CGG | - | chr7_2:40486174-40486193 | Msa1057830:CDS | 20.0% |
| !!! | ATGTTTTCGAGTATTTAATT+CGG | - | chr7_2:40486606-40486625 | Msa1057830:CDS | 20.0% |
| !!! | TTTTAACAAGAATGATTCTT+CGG | - | chr7_2:40486174-40486193 | Msa1057830:CDS | 20.0% |
| !!! | ATGTTTTCGAGTATTTAATT+CGG | - | chr7_2:40486606-40486625 | Msa1057830:CDS | 20.0% |
| ! | AAATGAACAATATGAAGATG+TGG | - | chr7_2:40486297-40486316 | Msa1057830:CDS | 25.0% |
| ! | AATTGAAATCGAAAGATCTT+TGG | - | chr7_2:40486363-40486382 | Msa1057830:CDS | 25.0% |
| ! | ATAATAAAGTACGTAAAGGA+AGG | - | chr7_2:40486431-40486450 | Msa1057830:intron | 25.0% |
| ! | TTCAAATCTTATCAAGCATT+GGG | - | chr7_2:40486481-40486500 | Msa1057830:intron | 25.0% |
| ! | TTAAATACTCGAAAACATAC+CGG | + | chr7_2:40486604-40486623 | None:intergenic | 25.0% |
| !!! | TGTTTTCGAGTATTTAATTC+GGG | - | chr7_2:40486607-40486626 | Msa1057830:CDS | 25.0% |
| ! | AAATGAACAATATGAAGATG+TGG | - | chr7_2:40486297-40486316 | Msa1057830:CDS | 25.0% |
| ! | AATTGAAATCGAAAGATCTT+TGG | - | chr7_2:40486363-40486382 | Msa1057830:CDS | 25.0% |
| ! | ATAATAAAGTACGTAAAGGA+AGG | - | chr7_2:40486431-40486450 | Msa1057830:intron | 25.0% |
| ! | TTCAAATCTTATCAAGCATT+GGG | - | chr7_2:40486481-40486500 | Msa1057830:intron | 25.0% |
| ! | TTAAATACTCGAAAACATAC+CGG | + | chr7_2:40486604-40486623 | None:intergenic | 25.0% |
| !!! | TGTTTTCGAGTATTTAATTC+GGG | - | chr7_2:40486607-40486626 | Msa1057830:CDS | 25.0% |
| ! | AGCTTCAAAACTAAGTTGAA+CGG | + | chr7_2:40485773-40485792 | None:intergenic | 30.0% |
| GATGAAAAGGGTCTTAATTA+TGG | - | chr7_2:40485838-40485857 | Msa1057830:CDS | 30.0% | |
| AACTAGGAAAAGATCCAAAA+GGG | - | chr7_2:40486087-40486106 | Msa1057830:CDS | 30.0% | |
| ACAAAATGCAACATCTTCTT+CGG | + | chr7_2:40486242-40486261 | None:intergenic | 30.0% | |
| GTTCAAATCTTATCAAGCAT+TGG | - | chr7_2:40486480-40486499 | Msa1057830:intron | 30.0% | |
| ! | TTTTCAACAACTTCGAATTC+TGG | + | chr7_2:40486565-40486584 | None:intergenic | 30.0% |
| AAAGAAAGTTCATGAATGTC+CGG | - | chr7_2:40486582-40486601 | Msa1057830:CDS | 30.0% | |
| AAAAGAACACATGTGATTCA+TGG | - | chr7_2:40486649-40486668 | Msa1057830:CDS | 30.0% | |
| AAAATTGGAACTGTTGTTGA+TGG | + | chr7_2:40486679-40486698 | None:intergenic | 30.0% | |
| !! | ACTCTTTTTGAGCTGAAAAT+TGG | + | chr7_2:40486694-40486713 | None:intergenic | 30.0% |
| CTAACTTCATCATCATCAAT+TGG | + | chr7_2:40486751-40486770 | None:intergenic | 30.0% | |
| ! | AGCTTCAAAACTAAGTTGAA+CGG | + | chr7_2:40485773-40485792 | None:intergenic | 30.0% |
| GATGAAAAGGGTCTTAATTA+TGG | - | chr7_2:40485838-40485857 | Msa1057830:CDS | 30.0% | |
| AACTAGGAAAAGATCCAAAA+GGG | - | chr7_2:40486087-40486106 | Msa1057830:CDS | 30.0% | |
| ACAAAATGCAACATCTTCTT+CGG | + | chr7_2:40486242-40486261 | None:intergenic | 30.0% | |
| GTTCAAATCTTATCAAGCAT+TGG | - | chr7_2:40486480-40486499 | Msa1057830:intron | 30.0% | |
| ! | TTTTCAACAACTTCGAATTC+TGG | + | chr7_2:40486565-40486584 | None:intergenic | 30.0% |
| AAAGAAAGTTCATGAATGTC+CGG | - | chr7_2:40486582-40486601 | Msa1057830:CDS | 30.0% | |
| AAAAGAACACATGTGATTCA+TGG | - | chr7_2:40486649-40486668 | Msa1057830:CDS | 30.0% | |
| AAAATTGGAACTGTTGTTGA+TGG | + | chr7_2:40486679-40486698 | None:intergenic | 30.0% | |
| !! | ACTCTTTTTGAGCTGAAAAT+TGG | + | chr7_2:40486694-40486713 | None:intergenic | 30.0% |
| CTAACTTCATCATCATCAAT+TGG | + | chr7_2:40486751-40486770 | None:intergenic | 30.0% | |
| TGCTATAGAAGCTTCAACAA+TGG | - | chr7_2:40485670-40485689 | Msa1057830:CDS | 35.0% | |
| !! | TTCAACAATGGAAGAGCATT+GGG | - | chr7_2:40485682-40485701 | Msa1057830:CDS | 35.0% |
| CTTCTTGCTTTGTAACAAGA+AGG | + | chr7_2:40485735-40485754 | None:intergenic | 35.0% | |
| TCTGATGAAGATGATGAAGA+CGG | + | chr7_2:40485805-40485824 | None:intergenic | 35.0% | |
| ! | AGATGATGACGTTGATGAAA+AGG | - | chr7_2:40485825-40485844 | Msa1057830:CDS | 35.0% |
| ! | GATGATGACGTTGATGAAAA+GGG | - | chr7_2:40485826-40485845 | Msa1057830:CDS | 35.0% |
| ! | AGAGTTTTCTTTTCCACAAG+TGG | - | chr7_2:40485903-40485922 | Msa1057830:CDS | 35.0% |
| CATCGAAGAATAATCCAACT+AGG | - | chr7_2:40486071-40486090 | Msa1057830:CDS | 35.0% | |
| ! | CTTTTGGATCTTTTCCTAGT+TGG | + | chr7_2:40486088-40486107 | None:intergenic | 35.0% |
| CAACTAGGAAAAGATCCAAA+AGG | - | chr7_2:40486086-40486105 | Msa1057830:CDS | 35.0% | |
| TGAACATGAACCTGTTAGTT+CGG | - | chr7_2:40486201-40486220 | Msa1057830:CDS | 35.0% | |
| !! | AAATCTTATCAAGCATTGGG+TGG | - | chr7_2:40486484-40486503 | Msa1057830:intron | 35.0% |
| GAAGATTAAACCGAACGTAA+CGG | - | chr7_2:40486525-40486544 | Msa1057830:intron | 35.0% | |
| TGCTATAGAAGCTTCAACAA+TGG | - | chr7_2:40485670-40485689 | Msa1057830:CDS | 35.0% | |
| !! | TTCAACAATGGAAGAGCATT+GGG | - | chr7_2:40485682-40485701 | Msa1057830:CDS | 35.0% |
| CTTCTTGCTTTGTAACAAGA+AGG | + | chr7_2:40485735-40485754 | None:intergenic | 35.0% | |
| TCTGATGAAGATGATGAAGA+CGG | + | chr7_2:40485805-40485824 | None:intergenic | 35.0% | |
| ! | AGATGATGACGTTGATGAAA+AGG | - | chr7_2:40485825-40485844 | Msa1057830:CDS | 35.0% |
| ! | GATGATGACGTTGATGAAAA+GGG | - | chr7_2:40485826-40485845 | Msa1057830:CDS | 35.0% |
| ! | AGAGTTTTCTTTTCCACAAG+TGG | - | chr7_2:40485903-40485922 | Msa1057830:CDS | 35.0% |
| CATCGAAGAATAATCCAACT+AGG | - | chr7_2:40486071-40486090 | Msa1057830:CDS | 35.0% | |
| ! | CTTTTGGATCTTTTCCTAGT+TGG | + | chr7_2:40486088-40486107 | None:intergenic | 35.0% |
| CAACTAGGAAAAGATCCAAA+AGG | - | chr7_2:40486086-40486105 | Msa1057830:CDS | 35.0% | |
| TGAACATGAACCTGTTAGTT+CGG | - | chr7_2:40486201-40486220 | Msa1057830:CDS | 35.0% | |
| !! | AAATCTTATCAAGCATTGGG+TGG | - | chr7_2:40486484-40486503 | Msa1057830:intron | 35.0% |
| GAAGATTAAACCGAACGTAA+CGG | - | chr7_2:40486525-40486544 | Msa1057830:intron | 35.0% | |
| ! | CTTCAACAATGGAAGAGCAT+TGG | - | chr7_2:40485681-40485700 | Msa1057830:CDS | 40.0% |
| !! | TCAACAATGGAAGAGCATTG+GGG | - | chr7_2:40485683-40485702 | Msa1057830:CDS | 40.0% |
| ACAGAACTTGTATCCACTTG+TGG | + | chr7_2:40485919-40485938 | None:intergenic | 40.0% | |
| ! | AAAAGGGTGTGGAAAATTCG+CGG | - | chr7_2:40486103-40486122 | Msa1057830:CDS | 40.0% |
| TTTAATTCGGGTCAAGCACT+TGG | - | chr7_2:40486619-40486638 | Msa1057830:CDS | 40.0% | |
| TCATCATCATCAATTGGAGC+AGG | + | chr7_2:40486745-40486764 | None:intergenic | 40.0% | |
| ! | CTTCAACAATGGAAGAGCAT+TGG | - | chr7_2:40485681-40485700 | Msa1057830:CDS | 40.0% |
| !! | TCAACAATGGAAGAGCATTG+GGG | - | chr7_2:40485683-40485702 | Msa1057830:CDS | 40.0% |
| ACAGAACTTGTATCCACTTG+TGG | + | chr7_2:40485919-40485938 | None:intergenic | 40.0% | |
| ! | AAAAGGGTGTGGAAAATTCG+CGG | - | chr7_2:40486103-40486122 | Msa1057830:CDS | 40.0% |
| TTTAATTCGGGTCAAGCACT+TGG | - | chr7_2:40486619-40486638 | Msa1057830:CDS | 40.0% | |
| TCATCATCATCAATTGGAGC+AGG | + | chr7_2:40486745-40486764 | None:intergenic | 40.0% | |
| !! | CAACAATGGAAGAGCATTGG+GGG | - | chr7_2:40485684-40485703 | Msa1057830:CDS | 45.0% |
| !! | AACAATGGAAGAGCATTGGG+GGG | - | chr7_2:40485685-40485704 | Msa1057830:CDS | 45.0% |
| ACGAGACGAATGCTTCTCTT+TGG | + | chr7_2:40485877-40485896 | None:intergenic | 45.0% | |
| GGAAAAGATCCAAAAGGGTG+TGG | - | chr7_2:40486092-40486111 | Msa1057830:CDS | 45.0% | |
| ! | GCGAATTTTCCACACCCTTT+TGG | + | chr7_2:40486104-40486123 | None:intergenic | 45.0% |
| ! | AAAGGGTGTGGAAAATTCGC+GGG | - | chr7_2:40486104-40486123 | Msa1057830:CDS | 45.0% |
| GCATCAGAAACCGAACTAAC+AGG | + | chr7_2:40486214-40486233 | None:intergenic | 45.0% | |
| TGCAGTTGTCGAGAGACAAA+TGG | - | chr7_2:40486266-40486285 | Msa1057830:CDS | 45.0% | |
| GATTAAACCGAACGTAACGG+TGG | - | chr7_2:40486528-40486547 | Msa1057830:intron | 45.0% | |
| GATTCTTCCACCGTTACGTT+CGG | + | chr7_2:40486538-40486557 | None:intergenic | 45.0% | |
| CATCATCAATTGGAGCAGGA+AGG | + | chr7_2:40486741-40486760 | None:intergenic | 45.0% | |
| !! | CAACAATGGAAGAGCATTGG+GGG | - | chr7_2:40485684-40485703 | Msa1057830:CDS | 45.0% |
| !! | AACAATGGAAGAGCATTGGG+GGG | - | chr7_2:40485685-40485704 | Msa1057830:CDS | 45.0% |
| ACGAGACGAATGCTTCTCTT+TGG | + | chr7_2:40485877-40485896 | None:intergenic | 45.0% | |
| GGAAAAGATCCAAAAGGGTG+TGG | - | chr7_2:40486092-40486111 | Msa1057830:CDS | 45.0% | |
| ! | GCGAATTTTCCACACCCTTT+TGG | + | chr7_2:40486104-40486123 | None:intergenic | 45.0% |
| ! | AAAGGGTGTGGAAAATTCGC+GGG | - | chr7_2:40486104-40486123 | Msa1057830:CDS | 45.0% |
| GCATCAGAAACCGAACTAAC+AGG | + | chr7_2:40486214-40486233 | None:intergenic | 45.0% | |
| TGCAGTTGTCGAGAGACAAA+TGG | - | chr7_2:40486266-40486285 | Msa1057830:CDS | 45.0% | |
| GATTAAACCGAACGTAACGG+TGG | - | chr7_2:40486528-40486547 | Msa1057830:intron | 45.0% | |
| GATTCTTCCACCGTTACGTT+CGG | + | chr7_2:40486538-40486557 | None:intergenic | 45.0% | |
| CATCATCAATTGGAGCAGGA+AGG | + | chr7_2:40486741-40486760 | None:intergenic | 45.0% | |
| ! | ACTAAGTTGAACGGTTCGCG+AGG | + | chr7_2:40485764-40485783 | None:intergenic | 50.0% |
| ! | TGATGACGACGAAGCTGAAG+AGG | - | chr7_2:40486330-40486349 | Msa1057830:CDS | 50.0% |
| AATTCGGGTCAAGCACTTGG+TGG | - | chr7_2:40486622-40486641 | Msa1057830:CDS | 50.0% | |
| ! | ACTAAGTTGAACGGTTCGCG+AGG | + | chr7_2:40485764-40485783 | None:intergenic | 50.0% |
| ! | TGATGACGACGAAGCTGAAG+AGG | - | chr7_2:40486330-40486349 | Msa1057830:CDS | 50.0% |
| AATTCGGGTCAAGCACTTGG+TGG | - | chr7_2:40486622-40486641 | Msa1057830:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 40485646 | 40486822 | 40485646 | ID=Msa1057830;Name=Msa1057830 |
| chr7_2 | mRNA | 40485646 | 40486822 | 40485646 | ID=Msa1057830-mRNA-1;Parent=Msa1057830;Name=Msa1057830-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|344 |
| chr7_2 | exon | 40486532 | 40486822 | 40486532 | ID=Msa1057830-mRNA-1:exon:7468;Parent=Msa1057830-mRNA-1 |
| chr7_2 | exon | 40485646 | 40486389 | 40485646 | ID=Msa1057830-mRNA-1:exon:7467;Parent=Msa1057830-mRNA-1 |
| chr7_2 | CDS | 40486532 | 40486822 | 40486532 | ID=Msa1057830-mRNA-1:cds;Parent=Msa1057830-mRNA-1 |
| chr7_2 | CDS | 40485646 | 40486389 | 40485646 | ID=Msa1057830-mRNA-1:cds;Parent=Msa1057830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
