AlfalfaGEDB | Msa1058110

M. sativa cultivar zhongmu-4 / Msa1058110

KEGG: K20092
GO: GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058110	XP_039684016.1	95.417	851	17	1	1	829	1	851	0.0	1664

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058110	sp\|F4IV45\|CHR10_ARATH	63.789	834	263	7	2	811	14	832	0.0	1065

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058110	A0A396H3K8	95.329	835	17	1	1	813	1	835	0.0	1629

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TFs/TRs:

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Gene ID	Type	Classification
Msa1058110	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058110	MtrunA17_Chr7g0232121	95.329	835	17	1	1	813	1	835	0.0	1629
Msa1058110	MtrunA17_Chr7g0231521	95.938	517	16	1	297	813	245	756	0.0	1023
Msa1058110	MtrunA17_Chr7g0231521	89.474	247	4	1	1	225	1	247	6.48e-147	451
Msa1058110	MtrunA17_Chr4g0066741	37.975	553	289	17	32	577	204	709	1.07e-103	344
Msa1058110	MtrunA17_Chr2g0286291	39.037	561	290	16	32	586	207	721	6.35e-102	339
Msa1058110	MtrunA17_Chr5g0394201	40.086	464	242	10	43	502	389	820	1.32e-100	336
Msa1058110	MtrunA17_Chr1g0205891	41.113	467	234	10	43	502	402	834	3.19e-100	335
Msa1058110	MtrunA17_Chr3g0137091	36.926	566	291	13	43	587	315	835	3.32e-99	337
Msa1058110	MtrunA17_Chr5g0442141	35.580	638	323	19	43	649	643	1223	7.01e-99	338
Msa1058110	MtrunA17_Chr3g0095091	37.500	544	274	11	43	558	597	1102	1.05e-95	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058110	AT2G44980.2	63.789	834	263	7	2	811	14	832	0.0	1065
Msa1058110	AT2G44980.3	63.866	833	263	7	2	811	14	831	0.0	1065
Msa1058110	AT2G44980.1	63.070	834	250	8	2	811	14	813	0.0	1048
Msa1058110	AT5G18620.1	41.529	484	239	12	32	511	210	653	7.72e-101	337
Msa1058110	AT5G18620.2	41.529	484	239	12	32	511	210	653	1.02e-100	337
Msa1058110	AT3G06400.2	41.736	484	238	14	32	511	205	648	1.28e-100	336
Msa1058110	AT3G06400.1	41.736	484	238	14	32	511	205	648	1.35e-100	336
Msa1058110	AT3G06400.3	41.736	484	238	14	32	511	205	648	1.35e-100	336
Msa1058110	AT5G19310.2	39.224	464	246	7	43	502	148	579	5.41e-100	328
Msa1058110	AT3G06010.1	39.224	464	247	8	43	502	429	861	2.86e-98	330

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Find 175 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCCCATGAGACAAC+TGG	0.530577	7_2:-41731101	None:intergenic
AAAGCTTGTCTGTCCACCTG+AGG	0.557008	7_2:-41734279	None:intergenic
AAAGTGCGCCAGTTGTCTCA+TGG	0.458523	7_2:+41731093	Msa1058110:CDS
AAATATCGACAGATGGGATT+GGG	0.468883	7_2:+41731033	Msa1058110:intron
AAATATTTGATAAGGATGAC+AGG	0.553111	7_2:+41734697	Msa1058110:CDS
AAATCAAAGCTTATGGAGTT+TGG	0.279044	7_2:+41732851	Msa1058110:CDS
AACAAACTCACATTATGTGT+TGG	0.531473	7_2:-41731371	None:intergenic
AACAGTTCATGATTCTCCAA+TGG	0.587768	7_2:+41732769	Msa1058110:intron
AAGAAAAGAAACTGTCTAAG+TGG	0.509162	7_2:+41734949	Msa1058110:CDS
AAGCAGAAGGAACTTGGATG+AGG	0.564617	7_2:+41734887	Msa1058110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAATTTCATGGCTTATA+AGG	+	chr7_2:41729322-41729341	Msa1058110:intron	30.0%
TGTTTCTCTGTTTGATTACA+CGG	+	chr7_2:41729626-41729645	Msa1058110:intron	30.0%
AAACTAGACTTAGGTGATTT+GGG	+	chr7_2:41730051-41730070	Msa1058110:intron	30.0%
AATGTTTCCATTATTTGCAG+GGG	+	chr7_2:41730432-41730451	Msa1058110:intron	30.0%
AAATGAACAAATGAGACACT+TGG	-	chr7_2:41730835-41730854	None:intergenic	30.0%
AAGTTTCACAGTCCATTATT+TGG	+	chr7_2:41730964-41730983	Msa1058110:intron	30.0%
TGTCGATATTTATACACAGA+CGG	-	chr7_2:41731024-41731043	None:intergenic	30.0%
TGTGTATAAATATCGACAGA+TGG	+	chr7_2:41731026-41731045	Msa1058110:intron	30.0%
GTGTATAAATATCGACAGAT+GGG	+	chr7_2:41731027-41731046	Msa1058110:intron	30.0%
AGTGTGAGAAAACTTTGATT+TGG	+	chr7_2:41731127-41731146	Msa1058110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	41729189	41737247	41729189	ID=Msa1058110;Name=Msa1058110
chr7_2	mRNA	41729189	41737247	41729189	ID=Msa1058110-mRNA-1;Parent=Msa1058110;Name=Msa1058110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.85\|0.86\|1\|1\|1\|15\|258\|829
chr7_2	exon	41729189	41729317	41729189	ID=Msa1058110-mRNA-1:exon:7621;Parent=Msa1058110-mRNA-1
chr7_2	exon	41731045	41731123	41731045	ID=Msa1058110-mRNA-1:exon:7622;Parent=Msa1058110-mRNA-1
chr7_2	exon	41731225	41731382	41731225	ID=Msa1058110-mRNA-1:exon:7623;Parent=Msa1058110-mRNA-1
chr7_2	exon	41731495	41731623	41731495	ID=Msa1058110-mRNA-1:exon:7624;Parent=Msa1058110-mRNA-1
chr7_2	exon	41731868	41732048	41731868	ID=Msa1058110-mRNA-1:exon:7625;Parent=Msa1058110-mRNA-1
chr7_2	exon	41732774	41732909	41732774	ID=Msa1058110-mRNA-1:exon:7626;Parent=Msa1058110-mRNA-1
chr7_2	exon	41733033	41733150	41733033	ID=Msa1058110-mRNA-1:exon:7627;Parent=Msa1058110-mRNA-1
chr7_2	exon	41733227	41733316	41733227	ID=Msa1058110-mRNA-1:exon:7628;Parent=Msa1058110-mRNA-1
chr7_2	exon	41733762	41733869	41733762	ID=Msa1058110-mRNA-1:exon:7629;Parent=Msa1058110-mRNA-1
chr7_2	exon	41733954	41734157	41733954	ID=Msa1058110-mRNA-1:exon:7630;Parent=Msa1058110-mRNA-1
chr7_2	exon	41734252	41734377	41734252	ID=Msa1058110-mRNA-1:exon:7631;Parent=Msa1058110-mRNA-1
chr7_2	exon	41734462	41735123	41734462	ID=Msa1058110-mRNA-1:exon:7632;Parent=Msa1058110-mRNA-1
chr7_2	exon	41735728	41735873	41735728	ID=Msa1058110-mRNA-1:exon:7633;Parent=Msa1058110-mRNA-1
chr7_2	exon	41736055	41736219	41736055	ID=Msa1058110-mRNA-1:exon:7634;Parent=Msa1058110-mRNA-1
chr7_2	exon	41736931	41737247	41736931	ID=Msa1058110-mRNA-1:exon:7635;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41729189	41729317	41729189	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41731045	41731123	41731045	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41731225	41731382	41731225	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41731495	41731623	41731495	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41731868	41732048	41731868	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41732774	41732909	41732774	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41733033	41733150	41733033	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41733227	41733316	41733227	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41733762	41733869	41733762	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41733954	41734157	41733954	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41734252	41734377	41734252	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41734462	41735123	41734462	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41735728	41735873	41735728	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41736055	41736219	41736055	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	CDS	41736931	41736989	41736931	ID=Msa1058110-mRNA-1:cds;Parent=Msa1058110-mRNA-1
chr7_2	three_prime_UTR	41736990	41737247	41736990	ID=Msa1058110-mRNA-1:three_prime_utr;Parent=Msa1058110-mRNA-1

Gene Sequence

>Msa1058110

ATGAACCTGAAATACGAACAGAGGCTCCAAGTCGCCGCTAAAATTATACTCGACAACGACGAAAGTTCCGGCGACGCGGCGACGAGTGAAGAAGAGCTTGGGATTAAGGCAACACTGAAACCTCATCAAATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCTCATGGGCCATTTTTGGTCATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTTTTCAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAAGCAGCCAACACATAATGTCATGTTGCCATTCGATGTGCTGTTAACATCATATGACATTGCACTAATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCGCAAAGGCTTAAAAACCCGTCAAGTGTTTTATTTAACGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGCATTTTTGCATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTTACCTCAGTTCATGATTCTCCAATGGTAAAGGAGAGACTTCAAATCCTAAGAAGTGTATTGGCGGCGTTTATGCTCCGACGAACTAAATCAAAGCTTATGGAGTTTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCACTTGTTAGCCTGCAAAAAAAGGTCTACATGTCAATACTGAGGAAGGAACTTCCGAAGCTAGTCGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGATACATCTAAGGAAAGCTTGCAGCCATCCTTATCTTTTTCCGGGTATTGAACCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTACTGATTCTGGACCAACTTCTTCGAAAGCTACATCATAATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATATGCTAATACGGGCTTGAATTTTGAAGCTAACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTAAATGTTACAGGCGATAATATTGTGGAACAAGAAGATAAACAATTATCTTCAGTTGGAACTGGTGATTTGAAATCCATCATGGTTGGATTACGTATGTTTGATCCCAATGAAATCAATGATGGAAAAGACAAGGACATGGATTTAACAGAAATTAATGCAATGGCTGACAAAGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATTTGATGTTAAGGAAAGAGGTTCTGCTTCTTTCTCTTGTGATCTTGATCTTGATGAGGCATCATATCTTGCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGACTCAGTTATTGACTTGAAAAGCAGAAGGAACTTGGATGAGGAAAAGAGTCAAAAACTTGAGACTGCAAGGAAGAAGGCAGAAGAAAAGAAACTGTCTAAGTGGAATGCAGCTGGATACCATTCGTTGAATGTTGAAGACCCTATTAGCCCACCAGATGGGGATAGCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCCCCGACAAACGTTCCTTCATCTGAACCTGCTTTAATATTCAGCTGTGTTGACACCTCCGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTATCTAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTATGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGACGGTAACGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCCTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCGACTTGGAAAGCTGCTTATCAAAGGCAGCGTTCTCAGCCGCTCAAAATTCTGGTATTATTACCGAAGATAACGTTAAGGATCTAGGCTGTTTCCAGACACAAGAGGGATAG

Protein sequence

>Msa1058110

MNLKYEQRLQVAAKIILDNDESSGDAATSEEELGIKATLKPHQMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTKQPTHNVMLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDISDLTSVHDSPMVKERLQILRSVLAAFMLRRTKSKLMEFGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVIHLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHRVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFAAIRSFSNSYANTGLNFEANQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNIVEQEDKQLSSVGTGDLKSIMVGLRMFDPNEINDGKDKDMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGFDVKERGSASFSCDLDLDEASYLAWVKKFEEVSKSSCDSVIDLKSRRNLDEEKSQKLETARKKAEEKKLSKWNAAGYHSLNVEDPISPPDGDSILDAGSVHFVYGDCTAPTNVPSSEPALIFSCVDTSGRWGHGGMFDALSKLSSSISDAYERAYEHGDLHLGDLHLIRLEDDGNDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVDLESCLSKAAFSAAQNSGIITEDNVKDLGCFQTQEG*