AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059720 MtrunA17_Chr7g0236691 57.931 145 27 2 1 111 670 814 7.02e-44 152
Msa1059720 MtrunA17_Chr7g0236471 55.705 149 32 2 1 115 510 658 7.22e-44 151
Msa1059720 MtrunA17_Chr7g0236531 54.422 147 33 2 1 113 208 354 1.54e-43 145
Msa1059720 MtrunA17_Chr7g0236571 57.639 144 27 2 6 115 510 653 3.48e-43 149
Msa1059720 MtrunA17_Chr4g0055011 55.782 147 31 2 1 113 241 387 7.69e-42 141
Msa1059720 MtrunA17_Chr7g0236551 55.782 147 31 2 1 113 658 804 1.20e-41 145
Msa1059720 MtrunA17_Chr7g0236341 56.944 144 25 3 1 111 688 827 3.56e-41 144
Msa1059720 MtrunA17_Chr7g0236641 55.102 147 32 2 1 113 695 841 1.82e-40 142
Msa1059720 MtrunA17_Chr7g0236201 53.741 147 34 3 1 113 640 786 2.54e-40 142
Msa1059720 MtrunA17_Chr7g0236121 53.676 136 30 2 1 103 674 809 1.19e-38 137
Msa1059720 MtrunA17_Chr7g0236651 53.741 147 26 3 1 113 655 793 6.42e-37 132
Msa1059720 MtrunA17_Chr7g0236231 46.259 147 45 2 1 113 688 834 3.16e-33 121
Msa1059720 MtrunA17_Chr7g0236561 48.276 145 40 3 1 111 675 818 6.71e-32 117
Msa1059720 MtrunA17_Chr2g0280761 44.138 145 45 4 1 111 1 143 6.57e-28 99.8
Msa1059720 MtrunA17_Chr7g0236161 45.038 131 30 2 1 103 640 756 8.15e-28 106
Msa1059720 MtrunA17_Chr7g0236511 47.656 128 33 2 20 113 669 796 1.48e-27 105
Msa1059720 MtrunA17_Chr8g0340081 37.584 149 59 3 1 115 677 825 1.36e-23 94.4
Msa1059720 MtrunA17_Chr8g0340071 36.913 149 60 3 1 115 673 821 3.88e-23 93.2
Msa1059720 MtrunA17_Chr2g0280831 40.000 145 50 4 1 111 265 406 3.21e-22 89.7
Msa1059720 MtrunA17_Chr8g0340111 43.089 123 36 3 1 89 675 797 5.82e-22 89.7
Msa1059720 MtrunA17_Chr8g0340051 40.769 130 40 4 4 99 202 328 7.48e-22 88.2
Msa1059720 MtrunA17_Chr2g0280791 40.000 145 50 4 1 111 691 832 8.19e-22 89.4
Msa1059720 MtrunA17_Chr2g0280801 40.000 145 50 4 1 111 697 838 8.27e-22 89.4
Msa1059720 MtrunA17_Chr2g0280781 40.690 145 45 4 1 111 680 817 4.83e-21 87.0
Msa1059720 MtrunA17_Chr8g0340091 41.667 132 40 4 1 98 702 830 8.51e-21 86.3
Msa1059720 MtrunA17_Chr3g0081001 35.811 148 61 2 1 114 513 660 1.03e-19 83.2
Msa1059720 MtrunA17_Chr7g0236631 62.712 59 18 1 1 55 24 82 2.99e-19 75.9
Msa1059720 MtrunA17_Chr3g0081011 34.014 147 63 2 1 113 509 655 4.66e-19 81.3
Msa1059720 MtrunA17_Chr8g0357691 57.353 68 23 1 1 62 648 715 7.14e-19 80.9
Msa1059720 MtrunA17_Chr8g0354431 36.735 147 59 3 1 113 512 658 2.36e-18 79.3
Msa1059720 MtrunA17_Chr8g0357781 54.412 68 25 1 1 62 1 68 2.57e-18 75.5
Msa1059720 MtrunA17_Chr8g0357651 57.812 64 21 1 1 58 640 703 3.48e-18 79.0
Msa1059720 MtrunA17_Chr8g0354391 34.459 148 62 5 1 113 104 251 3.62e-18 77.0
Msa1059720 MtrunA17_Chr2g0280711 39.474 152 55 7 1 115 700 851 4.91e-18 78.6
Msa1059720 MtrunA17_Chr8g0354421 37.415 147 58 4 1 113 533 679 5.35e-18 78.2
Msa1059720 MtrunA17_Chr8g0357831 54.688 64 23 1 1 58 362 425 9.34e-18 77.4
Msa1059720 MtrunA17_Chr8g0358081 35.862 145 55 4 1 107 631 775 9.34e-18 77.8
Msa1059720 MtrunA17_Chr5g0394011 41.667 120 34 4 1 84 521 640 9.65e-18 77.4
Msa1059720 MtrunA17_Chr8g0358141 33.793 145 58 4 1 107 248 392 1.48e-17 76.6
Msa1059720 MtrunA17_Chr8g0354441 36.054 147 60 4 1 113 520 666 2.60e-17 76.3
Msa1059720 MtrunA17_Chr4g0048581 55.072 69 26 1 1 64 701 769 2.79e-17 76.3
Msa1059720 MtrunA17_Chr2g0280731 36.111 144 56 3 1 108 720 863 3.81e-17 75.9
Msa1059720 MtrunA17_Chr8g0357871 53.968 63 26 1 1 60 1 63 3.91e-17 71.2
Msa1059720 MtrunA17_Chr3g0081071 57.576 66 22 1 1 60 99 164 8.94e-17 73.2
Msa1059720 MtrunA17_Chr2g0280751 40.000 115 36 2 1 82 696 810 9.65e-17 74.7
Msa1059720 MtrunA17_Chr8g0358061 51.471 68 27 1 1 62 226 293 9.89e-17 74.3
Msa1059720 MtrunA17_Chr4g0048631 33.784 148 63 3 1 113 702 849 1.05e-16 74.7
Msa1059720 MtrunA17_Chr6g0475091 40.336 119 36 3 1 84 751 869 1.14e-16 74.7
Msa1059720 MtrunA17_Chr8g0358121 51.471 68 27 1 1 62 632 699 1.22e-16 74.3
Msa1059720 MtrunA17_Chr6g0474991 40.336 119 36 3 1 84 33 151 1.75e-16 71.6
Msa1059720 MtrunA17_Chr6g0474811 38.333 120 39 2 1 85 743 862 1.84e-16 73.9
Msa1059720 MtrunA17_Chr2g0280691 34.932 146 58 3 1 113 696 837 2.18e-16 73.6
Msa1059720 MtrunA17_Chr8g0358101 51.471 68 27 1 1 62 634 701 2.19e-16 73.6
Msa1059720 MtrunA17_Chr8g0358071 33.793 145 58 4 1 107 646 790 2.32e-16 73.6
Msa1059720 MtrunA17_Chr8g0357631 54.688 64 23 1 1 58 638 701 2.59e-16 73.6
Msa1059720 MtrunA17_Chr8g0357881 56.250 64 22 1 1 58 646 709 2.77e-16 73.6
Msa1059720 MtrunA17_Chr8g0357981 51.471 68 27 1 1 62 475 542 3.22e-16 73.2
Msa1059720 MtrunA17_Chr8g0357661 51.562 64 25 1 1 58 33 96 3.73e-16 70.5
Msa1059720 MtrunA17_Chr8g0361141 33.784 148 65 2 1 115 686 833 5.37e-16 72.8
Msa1059720 MtrunA17_Chr6g0474871 37.815 119 39 2 1 84 735 853 5.90e-16 72.4
Msa1059720 MtrunA17_Chr3g0081031 39.831 118 37 3 1 84 522 639 6.33e-16 72.4
Msa1059720 MtrunA17_Chr8g0357961 51.471 68 27 1 1 62 654 721 6.51e-16 72.4
Msa1059720 MtrunA17_Chr4g0048801 31.544 149 67 4 1 115 688 835 6.65e-16 72.4
Msa1059720 MtrunA17_Chr4g0048571 45.833 72 33 1 4 69 109 180 7.00e-16 70.1
Msa1059720 MtrunA17_Chr1g0206321 52.174 69 26 2 1 62 1 69 7.63e-16 68.9
Msa1059720 MtrunA17_Chr8g0354271 36.975 119 40 3 1 84 505 623 8.13e-16 72.0
Msa1059720 MtrunA17_Chr1g0154311 50.000 70 29 1 1 64 521 590 1.04e-15 71.6
Msa1059720 MtrunA17_Chr8g0357991 50.000 68 28 1 1 62 655 722 1.26e-15 71.6
Msa1059720 MtrunA17_Chr8g0357761 54.688 64 23 1 1 58 650 713 1.27e-15 71.6
Msa1059720 MtrunA17_Chr6g0475131 37.190 121 37 3 1 84 179 297 1.63e-15 70.9
Msa1059720 MtrunA17_Chr4g0023111 34.559 136 55 3 1 102 884 1019 1.65e-15 71.2
Msa1059720 MtrunA17_Chr8g0361441 53.165 79 27 3 1 73 676 750 1.69e-15 71.2
Msa1059720 MtrunA17_Chr8g0354331 33.784 148 64 4 1 114 270 417 1.74e-15 70.9
Msa1059720 MtrunA17_Chr8g0361161 33.784 148 65 2 1 115 214 361 1.91e-15 70.9
Msa1059720 MtrunA17_Chr6g0475201 36.154 130 48 3 1 95 744 873 2.04e-15 70.9
Msa1059720 MtrunA17_Chr1g0206261 40.367 109 53 3 1 97 258 366 2.08e-15 70.9
Msa1059720 MtrunA17_Chr8g0357711 51.471 68 27 1 1 62 647 714 2.58e-15 70.9
Msa1059720 MtrunA17_Chr8g0354281 40.678 118 36 4 1 84 505 622 3.91e-15 70.1
Msa1059720 MtrunA17_Chr1g0154331 33.333 144 63 3 1 111 209 352 6.49e-15 69.3
Msa1059720 MtrunA17_Chr8g0357921 48.529 68 29 1 1 62 1 68 8.88e-15 66.2
Msa1059720 MtrunA17_Chr8g0358031 50.000 68 28 1 1 62 649 716 1.16e-14 68.9
Msa1059720 MtrunA17_Chr1g0206361 46.667 75 34 1 1 69 513 587 1.31e-14 68.6
Msa1059720 MtrunA17_Chr1g0206431 41.667 96 49 2 1 90 55 149 1.33e-14 66.6
Msa1059720 MtrunA17_Chr4g0048711 51.562 64 25 1 1 58 256 319 1.36e-14 68.2
Msa1059720 MtrunA17_Chr4g0048711 45.455 66 30 1 1 60 99 164 7.96e-12 60.5
Msa1059720 MtrunA17_Chr5g0428581 50.000 70 29 1 1 64 214 283 1.42e-14 68.2
Msa1059720 MtrunA17_Chr4g0048661 51.562 64 25 1 1 58 207 270 1.54e-14 68.2
Msa1059720 MtrunA17_Chr5g0394001 48.000 75 33 1 1 69 500 574 1.57e-14 68.6
Msa1059720 MtrunA17_Chr1g0154351 48.571 70 30 1 1 64 528 597 1.60e-14 68.6
Msa1059720 MtrunA17_Chr1g0206331 51.562 64 25 1 1 58 505 568 1.75e-14 68.2
Msa1059720 MtrunA17_Chr6g0474861 36.975 119 40 2 1 84 456 574 1.77e-14 68.2
Msa1059720 MtrunA17_Chr3g0081101 54.839 62 22 1 5 60 12 73 2.13e-14 65.5
Msa1059720 MtrunA17_Chr4g0042431 48.485 66 28 1 1 60 1 66 2.42e-14 65.1
Msa1059720 MtrunA17_Chr1g0154321 48.571 70 30 1 1 64 538 607 2.59e-14 67.8
Msa1059720 MtrunA17_Chr4g0042351 34.426 122 46 2 1 88 623 744 3.43e-14 67.4
Msa1059720 MtrunA17_Chr2g0280681 27.673 159 75 3 1 119 671 829 3.56e-14 67.4
Msa1059720 MtrunA17_Chr4g0048741 47.561 82 31 3 1 76 702 777 3.78e-14 67.4
Msa1059720 MtrunA17_Chr4g0042441 31.788 151 66 4 1 115 670 819 3.84e-14 67.4
Msa1059720 MtrunA17_Chr8g0358161 34.167 120 64 3 1 111 216 329 4.36e-14 67.0
Msa1059720 MtrunA17_Chr4g0048791 53.030 66 25 2 1 60 702 767 4.63e-14 67.0
Msa1059720 MtrunA17_Chr4g0042401 45.570 79 33 2 1 73 673 747 4.80e-14 67.0
Msa1059720 MtrunA17_Chr2g0323231 33.051 118 45 2 1 84 348 465 5.39e-14 67.0
Msa1059720 MtrunA17_Chr8g0360201 31.757 148 68 2 1 115 576 723 5.49e-14 67.0
Msa1059720 MtrunA17_Chr8g0347571 31.469 143 64 3 1 109 740 882 5.64e-14 67.0
Msa1059720 MtrunA17_Chr8g0361341 32.374 139 53 3 4 105 11 145 6.26e-14 63.9
Msa1059720 MtrunA17_Chr6g0474901 36.134 119 41 2 1 84 736 854 6.66e-14 66.6
Msa1059720 MtrunA17_Chr4g0020081 32.414 145 61 3 1 108 681 825 7.50e-14 66.6
Msa1059720 MtrunA17_Chr1g0206231 38.318 107 54 3 1 95 516 622 8.34e-14 66.2
Msa1059720 MtrunA17_Chr6g0475111 50.000 66 27 1 1 60 757 822 8.66e-14 66.2
Msa1059720 MtrunA17_Chr4g0023221 32.867 143 64 3 1 111 900 1042 8.83e-14 66.2
Msa1059720 MtrunA17_Chr3g0082941 50.794 63 25 1 1 57 343 405 9.80e-14 66.2
Msa1059720 MtrunA17_Chr1g0206351 52.381 63 24 1 1 57 523 585 1.04e-13 66.2
Msa1059720 MtrunA17_Chr3g0092301 52.941 68 26 1 1 62 100 167 1.17e-13 65.1
Msa1059720 MtrunA17_Chr3g0119041 50.746 67 25 2 1 60 510 575 1.19e-13 65.9
Msa1059720 MtrunA17_Chr1g0154371 50.000 70 29 1 1 64 526 595 1.63e-13 65.5
Msa1059720 MtrunA17_Chr3g0078541 33.553 152 57 5 1 115 700 844 1.85e-13 65.5
Msa1059720 MtrunA17_Chr6g0474831 43.421 76 36 1 1 69 226 301 2.64e-13 64.3
Msa1059720 MtrunA17_Chr4g0048681 46.970 66 29 1 1 60 450 515 3.05e-13 64.7
Msa1059720 MtrunA17_Chr3g0078521 48.101 79 31 3 1 73 689 763 3.28e-13 64.7
Msa1059720 MtrunA17_Chr4g0048731 46.970 66 29 1 1 60 216 281 3.30e-13 64.3
Msa1059720 MtrunA17_Chr8g0361251 32.374 139 53 3 4 105 679 813 3.37e-13 64.7
Msa1059720 MtrunA17_Chr1g0206561 50.746 67 26 1 1 60 499 565 3.40e-13 64.7
Msa1059720 MtrunA17_Chr4g0042361 34.532 139 56 4 1 106 709 845 3.77e-13 64.3
Msa1059720 MtrunA17_Chr3g0093161 49.367 79 30 3 1 73 667 741 4.47e-13 64.3
Msa1059720 MtrunA17_Chr8g0357911 71.053 38 11 0 1 38 75 112 4.63e-13 60.8
Msa1059720 MtrunA17_Chr3g0078531 46.835 79 32 3 1 73 697 771 5.88e-13 63.9
Msa1059720 MtrunA17_Chr1g0206221 28.058 139 66 4 7 111 1 139 6.84e-13 61.2
Msa1059720 MtrunA17_Chr5g0428111 51.471 68 27 2 1 62 673 740 8.99e-13 63.5
Msa1059720 MtrunA17_Chr8g0361431 50.000 68 28 1 1 62 654 721 9.15e-13 63.5
Msa1059720 MtrunA17_Chr1g0205771 47.059 68 30 1 1 62 513 580 1.11e-12 63.2
Msa1059720 MtrunA17_Chr3g0078551 33.562 146 64 4 1 113 694 839 1.17e-12 63.2
Msa1059720 MtrunA17_Chr1g0206551 50.746 67 26 1 1 60 205 271 1.28e-12 62.8
Msa1059720 MtrunA17_Chr2g0280701 48.485 66 28 1 1 60 670 735 1.62e-12 62.8
Msa1059720 MtrunA17_Chr8g0357901 65.789 38 13 0 1 38 18 55 1.83e-12 58.9
Msa1059720 MtrunA17_Chr1g0206521 47.143 70 31 1 1 64 505 574 1.86e-12 62.4
Msa1059720 MtrunA17_Chr1g0206521 47.143 70 31 1 1 64 1147 1216 1.86e-12 62.4
Msa1059720 MtrunA17_Chr5g0394021 50.000 64 26 1 1 58 491 554 1.93e-12 62.4
Msa1059720 MtrunA17_Chr1g0206391 42.466 73 34 2 1 67 210 280 2.08e-12 62.4
Msa1059720 MtrunA17_Chr4g0048781 46.875 64 28 1 1 58 158 221 2.37e-12 62.0
Msa1059720 MtrunA17_Chr8g0357931 49.180 61 25 1 8 62 564 624 2.43e-12 62.0
Msa1059720 MtrunA17_Chr1g0206531 47.143 70 31 1 1 64 507 576 2.56e-12 62.0
Msa1059720 MtrunA17_Chr1g0206461 45.714 70 32 1 1 64 503 572 2.90e-12 62.0
Msa1059720 MtrunA17_Chr3g0084681 37.584 149 53 6 1 115 634 776 2.95e-12 62.0
Msa1059720 MtrunA17_Chr6g0475181 43.478 69 28 2 1 69 1 58 3.23e-12 58.9
Msa1059720 MtrunA17_Chr3g0084431 52.308 65 25 1 4 62 667 731 4.04e-12 61.6
Msa1059720 MtrunA17_Chr5g0426941 49.254 67 27 2 1 60 509 575 4.08e-12 61.6
Msa1059720 MtrunA17_Chr8g0354351 35.135 148 57 7 1 109 503 650 4.15e-12 61.6
Msa1059720 MtrunA17_Chr4g0042391 42.105 76 38 1 1 70 623 698 5.59e-12 61.2
Msa1059720 MtrunA17_Chr4g0042341 36.567 134 57 5 1 106 693 826 5.63e-12 61.2
Msa1059720 MtrunA17_Chr1g0206401 45.312 64 29 1 1 58 520 583 5.86e-12 61.2
Msa1059720 MtrunA17_Chr6g0453561 32.000 150 67 4 1 115 37 186 6.34e-12 59.3
Msa1059720 MtrunA17_Chr4g0042381 42.105 76 38 1 1 70 623 698 6.60e-12 60.8
Msa1059720 MtrunA17_Chr4g0048641 44.286 70 32 2 1 64 628 696 6.73e-12 60.8
Msa1059720 MtrunA17_Chr5g0428101 47.059 68 30 1 1 62 671 738 7.89e-12 60.8
Msa1059720 MtrunA17_Chr3g0084491 34.228 149 62 5 1 115 676 822 1.02e-11 60.5
Msa1059720 MtrunA17_Chr3g0084411 34.459 148 61 6 4 115 672 819 1.12e-11 60.5
Msa1059720 MtrunA17_Chr6g0484231 34.375 128 51 4 1 95 218 345 1.21e-11 60.1
Msa1059720 MtrunA17_Chr3g0084441 34.247 146 60 5 4 115 679 822 1.33e-11 60.1
Msa1059720 MtrunA17_Chr5g0393981 44.000 75 36 1 1 69 566 640 1.83e-11 59.7
Msa1059720 MtrunA17_Chr6g0474851 42.105 76 37 1 1 69 98 173 2.02e-11 58.9
Msa1059720 MtrunA17_Chr3g0084421 50.000 70 29 2 1 64 632 701 2.26e-11 59.3
Msa1059720 MtrunA17_Chr8g0361301 35.577 104 55 2 4 95 679 782 2.34e-11 59.3
Msa1059720 MtrunA17_Chr8g0361261 41.667 72 36 1 4 69 710 781 2.79e-11 59.3
Msa1059720 MtrunA17_Chr2g0318811 41.975 81 38 2 1 76 670 746 3.13e-11 58.9
Msa1059720 MtrunA17_Chr1g0206451 48.571 70 30 1 1 64 542 611 5.20e-11 58.5
Msa1059720 MtrunA17_Chr5g0443531 43.939 66 31 2 1 60 847 912 7.77e-11 57.8
Msa1059720 MtrunA17_Chr4g0065521 38.889 72 38 2 4 69 210 281 7.87e-11 57.8
Msa1059720 MtrunA17_Chr8g0359691 32.407 108 61 4 1 96 833 940 8.55e-11 57.8
Msa1059720 MtrunA17_Chr2g0318831 43.284 67 33 1 1 62 672 738 9.01e-11 57.8
Msa1059720 MtrunA17_Chr3g0084691 33.813 139 58 4 1 105 692 830 9.29e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059720 AT1G11350.1 40.268 149 55 3 1 115 681 829 2.26e-23 94.0
Msa1059720 AT1G11330.2 38.926 149 57 3 1 115 693 841 1.59e-22 91.7
Msa1059720 AT1G11330.1 38.926 149 57 3 1 115 691 839 1.67e-22 91.7
Msa1059720 AT1G11300.1 41.259 143 55 2 1 115 678 819 3.66e-22 90.5
Msa1059720 AT1G11300.2 41.259 143 55 2 1 115 663 804 4.03e-22 90.5
Msa1059720 AT1G11303.1 41.007 139 53 3 1 111 678 815 1.00e-19 83.6
Msa1059720 AT1G61610.1 36.424 151 57 5 1 115 694 841 4.60e-19 81.6
Msa1059720 AT4G23150.1 37.241 145 55 4 1 110 505 648 1.33e-18 80.5
Msa1059720 AT4G21380.1 57.143 70 24 1 1 64 695 764 6.15e-18 78.6
Msa1059720 AT1G65790.1 32.903 155 64 4 1 115 688 842 7.75e-18 78.2
Msa1059720 AT4G23180.1 52.000 75 30 1 1 69 517 591 2.43e-17 77.0
Msa1059720 AT1G65800.1 57.812 64 21 1 1 58 692 755 2.99e-17 76.6
Msa1059720 AT1G11410.2 36.913 149 56 6 1 111 577 725 4.35e-17 76.3
Msa1059720 AT4G11530.1 52.500 80 27 2 1 73 521 596 5.34e-17 75.9
Msa1059720 AT4G23230.1 49.333 75 32 1 1 69 506 580 1.19e-16 74.7
Msa1059720 AT1G11410.1 36.913 149 56 6 1 111 692 840 2.27e-16 73.9
Msa1059720 AT1G11410.4 36.913 149 56 6 1 111 699 847 2.53e-16 73.9
Msa1059720 AT1G11410.3 36.913 149 56 6 1 111 668 816 2.70e-16 73.9
Msa1059720 AT4G21230.1 35.252 139 55 2 1 104 502 640 4.20e-16 73.2
Msa1059720 AT4G03230.7 36.585 123 43 3 1 88 702 824 1.14e-15 72.0
Msa1059720 AT4G03230.3 36.585 123 43 3 1 88 694 816 1.22e-15 72.0
Msa1059720 AT4G03230.2 36.585 123 43 3 1 88 759 881 1.26e-15 72.0
Msa1059720 AT4G03230.6 36.585 123 43 3 1 88 759 881 1.26e-15 72.0
Msa1059720 AT4G03230.4 36.585 123 43 3 1 88 859 981 1.62e-15 71.6
Msa1059720 AT4G03230.1 36.585 123 43 3 1 88 859 981 1.62e-15 71.6
Msa1059720 AT4G03230.8 34.959 123 45 2 1 88 701 823 1.73e-15 71.6
Msa1059720 AT4G03230.5 36.585 123 43 3 1 88 787 909 1.74e-15 71.6
Msa1059720 AT3G45860.1 52.564 78 29 2 1 70 520 597 1.90e-15 71.2
Msa1059720 AT4G23140.1 49.333 75 32 1 1 69 520 594 4.01e-15 70.5
Msa1059720 AT4G23140.2 49.333 75 32 1 1 69 526 600 4.06e-15 70.5
Msa1059720 AT4G23160.1 49.333 75 32 1 1 69 528 602 4.88e-15 70.1
Msa1059720 AT4G23130.1 50.000 76 31 1 1 69 509 584 5.62e-15 70.1
Msa1059720 AT4G23130.2 50.000 76 31 1 1 69 513 588 5.63e-15 70.1
Msa1059720 AT4G23310.1 51.429 70 27 1 1 63 677 746 6.46e-15 70.1
Msa1059720 AT4G23310.2 51.429 70 27 1 1 63 637 706 6.68e-15 69.7
Msa1059720 AT4G23300.1 46.835 79 33 1 1 70 522 600 1.04e-14 69.3
Msa1059720 AT4G11460.2 46.753 77 34 1 1 70 440 516 1.43e-14 68.9
Msa1059720 AT4G11480.4 47.368 76 33 1 1 69 490 565 1.75e-14 68.6
Msa1059720 AT4G11480.3 47.368 76 33 1 1 69 493 568 1.77e-14 68.6
Msa1059720 AT4G11480.1 47.368 76 33 1 1 69 498 573 1.91e-14 68.6
Msa1059720 AT1G11340.1 32.215 149 63 5 1 113 684 830 2.61e-14 68.2
Msa1059720 AT4G11460.1 46.753 77 34 1 1 70 518 594 2.67e-14 68.2
Msa1059720 AT4G11460.3 46.753 77 34 1 1 70 515 591 2.72e-14 68.2
Msa1059720 AT4G21366.1 57.627 59 19 2 1 53 1 59 2.89e-14 64.3
Msa1059720 AT4G05200.2 46.667 75 34 1 1 69 534 608 3.57e-14 67.8
Msa1059720 AT4G05200.1 46.667 75 34 1 1 69 516 590 3.78e-14 67.8
Msa1059720 AT4G00970.1 32.877 146 63 3 1 111 515 660 4.95e-14 67.4
Msa1059720 AT4G23270.2 48.052 77 33 1 1 70 495 571 5.71e-14 67.4
Msa1059720 AT4G23270.1 48.052 77 33 1 1 70 495 571 5.71e-14 67.4
Msa1059720 AT4G00960.2 36.111 108 56 2 1 95 133 240 5.85e-14 66.6
Msa1059720 AT4G23270.3 48.052 77 33 1 1 70 495 571 5.93e-14 67.0
Msa1059720 AT4G21390.1 52.308 65 26 1 1 60 698 762 6.33e-14 67.0
Msa1059720 AT4G00960.3 36.111 108 56 2 1 95 140 247 6.54e-14 66.2
Msa1059720 AT4G11490.1 46.053 76 34 1 1 69 490 565 8.08e-14 66.6
Msa1059720 AT4G23250.3 47.368 76 33 1 1 69 523 598 8.18e-14 66.6
Msa1059720 AT4G23250.1 47.368 76 33 1 1 69 528 603 8.80e-14 66.6
Msa1059720 AT4G23250.2 47.368 76 33 1 1 69 523 598 8.91e-14 66.6
Msa1059720 AT4G00960.1 36.111 108 56 2 1 95 227 334 1.00e-13 66.2
Msa1059720 AT3G16030.1 49.296 71 29 1 1 64 696 766 1.03e-13 66.6
Msa1059720 AT4G21410.3 51.471 68 25 2 1 60 528 595 1.04e-13 66.6
Msa1059720 AT4G11470.2 46.053 76 34 1 1 69 513 588 1.08e-13 66.2
Msa1059720 AT4G21410.1 51.471 68 25 2 1 60 403 470 1.21e-13 66.2
Msa1059720 AT4G11470.1 46.053 76 34 1 1 69 508 583 1.24e-13 66.2
Msa1059720 AT3G16030.2 49.296 71 29 1 1 64 573 643 1.28e-13 66.2
Msa1059720 AT3G16030.6 49.296 71 29 1 1 64 717 787 1.35e-13 66.2
Msa1059720 AT4G23260.2 52.239 67 25 1 1 60 497 563 1.57e-13 65.9
Msa1059720 AT4G23290.1 46.053 76 34 1 1 69 489 564 1.71e-13 65.9
Msa1059720 AT4G23260.1 52.239 67 25 1 1 60 508 574 1.81e-13 65.9
Msa1059720 AT4G23290.2 46.053 76 34 1 1 69 532 607 2.39e-13 65.5
Msa1059720 AT1G67520.5 49.351 77 31 2 1 69 428 504 3.93e-13 64.7
Msa1059720 AT1G67520.8 49.351 77 31 2 1 69 457 533 4.35e-13 64.7
Msa1059720 AT1G67520.7 49.351 77 31 2 1 69 457 533 4.35e-13 64.7
Msa1059720 AT1G67520.6 49.351 77 31 2 1 69 672 748 5.08e-13 64.7
Msa1059720 AT1G67520.3 49.351 77 31 2 1 69 665 741 5.13e-13 64.7
Msa1059720 AT1G67520.4 49.351 77 31 2 1 69 622 698 5.36e-13 64.3
Msa1059720 AT4G38830.1 45.833 72 33 1 1 66 514 585 5.65e-13 64.3
Msa1059720 AT1G07650.2 45.122 82 34 4 1 76 854 930 6.78e-13 64.3
Msa1059720 AT1G07650.1 45.122 82 34 4 1 76 848 924 7.25e-13 63.9
Msa1059720 AT1G11330.3 75.610 41 10 0 1 41 693 733 7.73e-13 63.9
Msa1059720 AT1G07650.4 45.122 82 34 4 1 76 635 711 7.85e-13 63.9
Msa1059720 AT1G07650.3 45.122 82 34 4 1 76 822 898 7.90e-13 63.9
Msa1059720 AT4G21400.7 37.963 108 54 2 1 95 522 629 1.29e-12 63.2
Msa1059720 AT1G61370.2 31.757 148 64 3 1 115 519 662 1.72e-12 63.2
Msa1059720 AT1G61380.1 39.640 111 61 2 1 105 657 767 2.13e-12 62.8
Msa1059720 AT4G23180.2 69.048 42 13 0 1 42 517 558 2.17e-12 62.8
Msa1059720 AT1G61380.2 39.640 111 61 2 1 105 510 620 2.18e-12 62.8
Msa1059720 AT1G61370.1 31.757 148 64 3 1 115 670 813 2.26e-12 62.8
Msa1059720 AT4G23200.1 44.737 76 35 1 1 69 505 580 2.67e-12 62.4
Msa1059720 AT4G21400.2 37.963 108 54 2 1 95 520 627 3.18e-12 62.4
Msa1059720 AT4G21400.8 37.963 108 54 2 1 95 421 528 3.58e-12 62.0
Msa1059720 AT4G21400.1 37.963 108 54 2 1 95 532 639 3.58e-12 62.0
Msa1059720 AT4G23280.3 42.857 77 37 1 1 70 463 539 4.22e-12 62.0
Msa1059720 AT1G61610.2 59.574 47 19 0 1 47 694 740 4.30e-12 62.0
Msa1059720 AT1G61420.3 33.077 130 54 3 1 97 513 642 4.63e-12 61.6
Msa1059720 AT1G61420.5 33.077 130 54 3 1 97 515 644 4.64e-12 61.6
Msa1059720 AT4G23280.1 42.857 77 37 1 1 70 513 589 4.92e-12 61.6
Msa1059720 AT4G23280.2 42.857 77 37 1 1 70 511 587 5.42e-12 61.6
Msa1059720 AT4G23240.2 43.421 76 36 1 1 69 197 272 5.66e-12 61.2
Msa1059720 AT4G23320.2 42.105 76 37 1 1 69 352 427 5.72e-12 61.6
Msa1059720 AT4G23320.1 42.105 76 37 1 1 69 352 427 5.72e-12 61.6
Msa1059720 AT4G21390.2 61.702 47 18 0 1 47 698 744 6.60e-12 61.2
Msa1059720 AT4G23240.1 43.421 76 36 1 1 69 504 579 6.77e-12 61.2
Msa1059720 AT4G23320.3 42.105 76 37 1 1 69 373 448 6.85e-12 61.2
Msa1059720 AT4G23220.1 41.558 77 38 1 1 70 505 581 8.71e-12 60.8
Msa1059720 AT4G27290.2 48.485 66 28 1 1 60 680 745 9.81e-12 60.8
Msa1059720 AT1G61420.1 33.077 130 54 3 1 97 663 792 9.88e-12 60.8
Msa1059720 AT1G61420.2 33.077 130 54 3 1 97 665 794 1.07e-11 60.8
Msa1059720 AT1G61420.4 33.077 130 54 3 1 97 665 794 1.07e-11 60.8
Msa1059720 AT1G61440.1 42.857 91 44 2 1 83 647 737 1.20e-11 60.5
Msa1059720 AT1G61440.3 42.857 91 44 2 1 83 652 742 1.20e-11 60.5
Msa1059720 AT1G61440.2 39.823 113 58 3 1 105 677 787 1.21e-11 60.5
Msa1059720 AT4G27290.1 48.485 66 28 1 1 60 634 699 1.45e-11 60.5
Msa1059720 AT1G61430.11 40.659 91 46 2 1 83 635 725 1.47e-11 60.5
Msa1059720 AT1G61430.12 40.659 91 46 2 1 83 635 725 1.47e-11 60.5
Msa1059720 AT1G61430.13 40.659 91 46 2 1 83 635 725 1.47e-11 60.5
Msa1059720 AT4G23130.3 78.378 37 8 0 1 37 513 549 1.49e-11 60.5
Msa1059720 AT1G61430.9 38.053 113 60 3 1 105 658 768 1.56e-11 60.5
Msa1059720 AT1G61430.1 40.659 91 46 2 1 83 661 751 1.70e-11 60.1
Msa1059720 AT1G61390.2 30.345 145 64 4 1 113 521 660 1.75e-11 60.1
Msa1059720 AT1G11280.1 48.485 66 28 1 1 60 684 749 1.86e-11 60.1
Msa1059720 AT1G53430.2 42.424 66 32 2 1 60 797 862 2.16e-11 60.1
Msa1059720 AT1G61360.2 58.182 55 17 2 1 49 586 640 2.21e-11 59.7
Msa1059720 AT1G61360.3 58.182 55 17 2 1 49 586 640 2.21e-11 59.7
Msa1059720 AT1G61360.4 58.182 55 17 2 1 49 586 640 2.21e-11 59.7
Msa1059720 AT1G53430.1 43.750 64 30 2 1 58 838 901 2.36e-11 59.7
Msa1059720 AT1G61390.1 30.345 145 64 4 1 113 689 828 2.37e-11 59.7
Msa1059720 AT1G61500.3 50.000 68 28 2 1 62 665 732 2.63e-11 59.7
Msa1059720 AT1G61500.1 50.000 68 28 2 1 62 660 727 2.79e-11 59.7
Msa1059720 AT1G53440.1 40.909 66 33 2 1 60 836 901 3.32e-11 59.3
Msa1059720 AT1G61550.1 38.793 116 55 5 1 105 658 768 4.53e-11 58.9
Msa1059720 AT1G11280.3 48.485 66 28 1 1 60 662 727 4.53e-11 58.9
Msa1059720 AT1G11280.4 48.485 66 28 1 1 60 672 737 4.81e-11 58.9
Msa1059720 AT4G23210.3 37.143 105 56 2 1 95 527 631 4.81e-11 58.9
Msa1059720 AT1G11280.2 48.485 66 28 1 1 60 674 739 5.00e-11 58.9
Msa1059720 AT1G61360.1 58.182 55 17 2 1 49 667 721 6.31e-11 58.5
Msa1059720 AT1G61500.2 50.000 68 28 2 1 62 642 709 6.47e-11 58.5
Msa1059720 AT4G23190.3 44.304 79 35 2 1 70 441 519 6.79e-11 58.5
Msa1059720 AT4G23190.4 44.304 79 35 2 1 70 441 519 6.79e-11 58.5
Msa1059720 AT1G70740.1 34.579 107 59 4 1 96 230 336 6.98e-11 58.2
Msa1059720 AT4G23190.1 44.304 79 35 2 1 70 519 597 7.02e-11 58.5
Msa1059720 AT4G04490.1 47.541 61 28 2 1 58 509 568 7.29e-11 58.2
Msa1059720 AT1G11340.3 68.421 38 12 0 1 38 752 789 7.42e-11 58.2

Find 18 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAACATATTCTGCCTT+CGG 0.411991 7_2:+46469990 None:intergenic
TCACTATGATCATATATTCC+TGG 0.413256 7_2:+46470156 None:intergenic
TGTAATACTGACAGTATTGA+TGG 0.438686 7_2:+46469934 None:intergenic
GTGATTATAATCATGTTTCA+AGG 0.450808 7_2:-46470137 Msa1059720:intron
TTCTGCCTTCGGATGAAAGC+AGG 0.485674 7_2:+46470001 None:intergenic
TTGATGCTAGAGATCATTAG+TGG 0.509467 7_2:-46470358 Msa1059720:CDS
CGGATGAAAGCAGGTTGACT+AGG 0.521190 7_2:+46470010 None:intergenic
AGTATTACATACATAGTGGC+AGG 0.561252 7_2:-46469920 Msa1059720:CDS
GTCAACCTGCTTTCATCCGA+AGG 0.564262 7_2:-46470006 Msa1059720:CDS
TATATTCCTGGATCTATCAA+AGG 0.578044 7_2:+46470168 None:intergenic
AAAGCAGGTTGACTAGGAGG+AGG 0.588090 7_2:+46470016 None:intergenic
TCATTTAGGTCTGGATACAA+TGG 0.588872 7_2:-46470209 Msa1059720:intron
TTAGGTCTGGATACAATGGC+AGG 0.590922 7_2:-46470205 Msa1059720:intron
TGTCAGTATTACATACATAG+TGG 0.598790 7_2:-46469924 Msa1059720:CDS
TCTCTTGAATATGCAATGCA+AGG 0.599665 7_2:-46470421 Msa1059720:CDS
ATGAAAGCAGGTTGACTAGG+AGG 0.603846 7_2:+46470013 None:intergenic
TGATGCTAGAGATCATTAGT+GGG 0.610002 7_2:-46470357 Msa1059720:CDS
GTCTGGATACAATGGCAGGA+AGG 0.618922 7_2:-46470201 Msa1059720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTTTGCTTTTCATTT+AGG - chr7_2:46470108-46470127 Msa1059720:intron 20.0%
!!! AAATCAGATGTTTTTAGCTT+TGG - chr7_2:46469946-46469965 Msa1059720:CDS 25.0%
! TTAGAAATTGTATCTGCAAA+CGG + chr7_2:46470081-46470100 None:intergenic 25.0%
! GTGATTATAATCATGTTTCA+AGG - chr7_2:46470194-46470213 Msa1059720:CDS 25.0%
!! TTTTGCTTTTCATTTAGGTC+TGG - chr7_2:46470113-46470132 Msa1059720:intron 30.0%
! ATTTTACCTTTGATAGATCC+AGG - chr7_2:46470157-46470176 Msa1059720:CDS 30.0%
TATATTCCTGGATCTATCAA+AGG + chr7_2:46470166-46470185 None:intergenic 30.0%
TCACTATGATCATATATTCC+TGG + chr7_2:46470178-46470197 None:intergenic 30.0%
TTTCAAGGTGCATACATATA+GGG - chr7_2:46470209-46470228 Msa1059720:intron 30.0%
AATTCAACATATTCTGCCTT+CGG + chr7_2:46470344-46470363 None:intergenic 30.0%
!!! AGATCGTTTTGATTTTCATC+AGG + chr7_2:46470375-46470394 None:intergenic 30.0%
! TGTAATACTGACAGTATTGA+TGG + chr7_2:46470400-46470419 None:intergenic 30.0%
TGTCAGTATTACATACATAG+TGG - chr7_2:46470407-46470426 Msa1059720:CDS 30.0%
TCTCTTGAATATGCAATGCA+AGG - chr7_2:46469910-46469929 Msa1059720:CDS 35.0%
! TGCAATGCAAGGACTATTTT+CGG - chr7_2:46469921-46469940 Msa1059720:CDS 35.0%
TTGATGCTAGAGATCATTAG+TGG - chr7_2:46469973-46469992 Msa1059720:CDS 35.0%
TGATGCTAGAGATCATTAGT+GGG - chr7_2:46469974-46469993 Msa1059720:CDS 35.0%
TAGTCAGAAACGAACTATTG+AGG + chr7_2:46470041-46470060 None:intergenic 35.0%
ATTGTATCTGCAAACGGAAA+AGG + chr7_2:46470075-46470094 None:intergenic 35.0%
TCATTTAGGTCTGGATACAA+TGG - chr7_2:46470122-46470141 Msa1059720:intron 35.0%
GTTTCAAGGTGCATACATAT+AGG - chr7_2:46470208-46470227 Msa1059720:intron 35.0%
AATTTCTATGCTTACCAGTG+AGG - chr7_2:46470281-46470300 Msa1059720:intron 35.0%
AGTATTACATACATAGTGGC+AGG - chr7_2:46470411-46470430 Msa1059720:CDS 35.0%
GAAATTACTGCAGCCATAGT+GGG + chr7_2:46470267-46470286 None:intergenic 40.0%
AGAAATTACTGCAGCCATAG+TGG + chr7_2:46470268-46470287 None:intergenic 40.0%
TTAGGTCTGGATACAATGGC+AGG - chr7_2:46470126-46470145 Msa1059720:intron 45.0%
! ATGAAAGCAGGTTGACTAGG+AGG + chr7_2:46470321-46470340 None:intergenic 45.0%
GTCTGGATACAATGGCAGGA+AGG - chr7_2:46470130-46470149 Msa1059720:intron 50.0%
TTCGTGTGTACAAGACGTGC+CGG - chr7_2:46470234-46470253 Msa1059720:intron 50.0%
GTACAAGACGTGCCGGATAT+AGG - chr7_2:46470241-46470260 Msa1059720:intron 50.0%
!! AGCCATAGTGGGCCTATATC+CGG + chr7_2:46470256-46470275 None:intergenic 50.0%
AGGAAGAAATGCAGCCTCAC+TGG + chr7_2:46470298-46470317 None:intergenic 50.0%
! AAAGCAGGTTGACTAGGAGG+AGG + chr7_2:46470318-46470337 None:intergenic 50.0%
! CGGATGAAAGCAGGTTGACT+AGG + chr7_2:46470324-46470343 None:intergenic 50.0%
GTCAACCTGCTTTCATCCGA+AGG - chr7_2:46470325-46470344 Msa1059720:CDS 50.0%
TTCTGCCTTCGGATGAAAGC+AGG + chr7_2:46470333-46470352 None:intergenic 50.0%
TGCCGGATATAGGCCCACTA+TGG - chr7_2:46470251-46470270 Msa1059720:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 46469907 46470446 46469907 ID=Msa1059720;Name=Msa1059720
chr7_2 mRNA 46469907 46470446 46469907 ID=Msa1059720-mRNA-1;Parent=Msa1059720;Name=Msa1059720-mRNA-1;_AED=0.67;_eAED=0.67;_QI=0|0|0|0.66|1|1|3|0|119
chr7_2 exon 46470321 46470446 46470321 ID=Msa1059720-mRNA-1:exon:8422;Parent=Msa1059720-mRNA-1
chr7_2 exon 46470138 46470223 46470138 ID=Msa1059720-mRNA-1:exon:8421;Parent=Msa1059720-mRNA-1
chr7_2 exon 46469907 46470054 46469907 ID=Msa1059720-mRNA-1:exon:8420;Parent=Msa1059720-mRNA-1
chr7_2 CDS 46470321 46470446 46470321 ID=Msa1059720-mRNA-1:cds;Parent=Msa1059720-mRNA-1
chr7_2 CDS 46470138 46470223 46470138 ID=Msa1059720-mRNA-1:cds;Parent=Msa1059720-mRNA-1
chr7_2 CDS 46469907 46470054 46469907 ID=Msa1059720-mRNA-1:cds;Parent=Msa1059720-mRNA-1
Gene Sequence

>Msa1059720

ATGTCTCTTGAATATGCAATGCAAGGACTATTTTCGGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGATGCTAGAGATCATTAGTGGGAGAAGAAACTCAAGCTTTTATGACAATGAGAATGCTGTCTGGATACAATGGCAGGAAGGCAGTATTTTACCTTTGATAGATCCAGGAATATATGATCATAGTGATTATAATCATGTTTCAAGTGAGGCTGCATTTCTTCCTCCTCCTAGTCAACCTGCTTTCATCCGAAGGCAGAATATGTTGAATTCGAAGTCACCTGATGAAAATCAAAACGATCTATCCATCAATACTGTCAGTATTACATACATAGTGGCAGGTAGCGCACTATAA
Protein sequence

>Msa1059720

MSLEYAMQGLFSEKSDVFSFGVLMLEIISGRRNSSFYDNENAVWIQWQEGSILPLIDPGIYDHSDYNHVSSEAAFLPPPSQPAFIRRQNMLNSKSPDENQNDLSINTVSITYIVAGSAL*