Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059920 | AES79131.2 | 80.383 | 418 | 37 | 1 | 1 | 373 | 240 | 657 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059920 | sp|Q9FYR7|SCL8_ARATH | 45.692 | 383 | 138 | 6 | 52 | 372 | 265 | 639 | 6.17e-102 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059920 | G7L175 | 80.383 | 418 | 37 | 1 | 1 | 373 | 240 | 657 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1059920 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059920 | MtrunA17_Chr7g0236851 | 80.383 | 418 | 37 | 1 | 1 | 373 | 240 | 657 | 0.0 | 673 |
| Msa1059920 | MtrunA17_Chr6g0468561 | 49.867 | 375 | 129 | 6 | 52 | 372 | 292 | 661 | 1.33e-114 | 347 |
| Msa1059920 | MtrunA17_Chr4g0037781 | 72.316 | 177 | 49 | 0 | 1 | 177 | 2 | 178 | 2.98e-84 | 254 |
| Msa1059920 | MtrunA17_Chr3g0125811 | 36.340 | 377 | 191 | 6 | 45 | 372 | 193 | 569 | 2.75e-68 | 225 |
| Msa1059920 | MtrunA17_Chr1g0159461 | 36.856 | 369 | 184 | 6 | 53 | 372 | 223 | 591 | 5.42e-63 | 211 |
| Msa1059920 | MtrunA17_Chr2g0319091 | 32.249 | 369 | 201 | 5 | 53 | 372 | 210 | 578 | 2.51e-51 | 180 |
| Msa1059920 | MtrunA17_Chr4g0076091 | 43.721 | 215 | 119 | 2 | 160 | 372 | 328 | 542 | 7.54e-51 | 178 |
| Msa1059920 | MtrunA17_Chr4g0037771 | 76.344 | 93 | 22 | 0 | 57 | 149 | 1 | 93 | 5.57e-47 | 155 |
| Msa1059920 | MtrunA17_Chr5g0447691 | 29.340 | 409 | 235 | 6 | 13 | 372 | 140 | 543 | 1.41e-46 | 166 |
| Msa1059920 | MtrunA17_Chr3g0101141 | 29.459 | 370 | 210 | 6 | 53 | 372 | 173 | 541 | 1.05e-44 | 161 |
| Msa1059920 | MtrunA17_Chr2g0290241 | 39.070 | 215 | 129 | 2 | 160 | 372 | 210 | 424 | 4.52e-44 | 157 |
| Msa1059920 | MtrunA17_Chr5g0445331 | 29.815 | 379 | 201 | 10 | 53 | 372 | 159 | 531 | 1.18e-43 | 158 |
| Msa1059920 | MtrunA17_Chr7g0224271 | 32.174 | 230 | 145 | 5 | 146 | 372 | 451 | 672 | 6.16e-26 | 109 |
| Msa1059920 | MtrunA17_Chr8g0357601 | 31.739 | 230 | 150 | 4 | 147 | 372 | 325 | 551 | 2.94e-24 | 104 |
| Msa1059920 | MtrunA17_Chr3g0110971 | 31.064 | 235 | 140 | 5 | 156 | 372 | 356 | 586 | 1.45e-23 | 102 |
| Msa1059920 | MtrunA17_Chr4g0057291 | 31.489 | 235 | 147 | 7 | 148 | 372 | 431 | 661 | 2.01e-23 | 102 |
| Msa1059920 | MtrunA17_Chr4g0057891 | 29.130 | 230 | 152 | 5 | 147 | 372 | 297 | 519 | 5.53e-23 | 100 |
| Msa1059920 | MtrunA17_Chr8g0376381 | 30.531 | 226 | 138 | 6 | 157 | 372 | 305 | 521 | 1.40e-21 | 96.3 |
| Msa1059920 | MtrunA17_Chr2g0306641 | 31.674 | 221 | 144 | 5 | 157 | 372 | 268 | 486 | 1.60e-21 | 95.9 |
| Msa1059920 | MtrunA17_Chr4g0031721 | 26.512 | 215 | 155 | 2 | 161 | 372 | 469 | 683 | 2.69e-20 | 92.8 |
| Msa1059920 | MtrunA17_Chr2g0328391 | 25.000 | 216 | 158 | 3 | 161 | 372 | 453 | 668 | 1.99e-19 | 90.1 |
| Msa1059920 | MtrunA17_Chr4g0031741 | 27.700 | 213 | 148 | 4 | 165 | 372 | 438 | 649 | 3.42e-19 | 89.4 |
| Msa1059920 | MtrunA17_Chr7g0270031 | 25.751 | 233 | 165 | 3 | 144 | 372 | 325 | 553 | 4.16e-19 | 89.0 |
| Msa1059920 | MtrunA17_Chr7g0238891 | 25.581 | 215 | 149 | 3 | 165 | 372 | 529 | 739 | 9.30e-18 | 85.1 |
| Msa1059920 | MtrunA17_Chr7g0245601 | 29.091 | 220 | 139 | 7 | 159 | 372 | 583 | 791 | 9.52e-18 | 85.1 |
| Msa1059920 | MtrunA17_Chr4g0031711 | 22.831 | 219 | 165 | 3 | 159 | 373 | 515 | 733 | 7.37e-17 | 82.4 |
| Msa1059920 | MtrunA17_Chr2g0328431 | 22.472 | 267 | 189 | 5 | 123 | 372 | 388 | 653 | 1.39e-16 | 81.3 |
| Msa1059920 | MtrunA17_Chr2g0328411 | 22.846 | 267 | 188 | 5 | 123 | 372 | 388 | 653 | 1.46e-16 | 81.3 |
| Msa1059920 | MtrunA17_Chr2g0328341 | 25.424 | 236 | 163 | 4 | 147 | 373 | 407 | 638 | 1.93e-16 | 80.9 |
| Msa1059920 | MtrunA17_Chr4g0031731 | 24.766 | 214 | 157 | 3 | 161 | 370 | 410 | 623 | 2.33e-16 | 80.5 |
| Msa1059920 | MtrunA17_Chr2g0328381 | 24.000 | 250 | 177 | 4 | 132 | 372 | 395 | 640 | 4.19e-16 | 79.7 |
| Msa1059920 | MtrunA17_Chr4g0031701 | 23.832 | 214 | 159 | 3 | 161 | 370 | 410 | 623 | 2.48e-15 | 77.4 |
| Msa1059920 | MtrunA17_Chr2g0328401 | 24.444 | 225 | 156 | 3 | 116 | 326 | 382 | 606 | 3.57e-15 | 77.0 |
| Msa1059920 | MtrunA17_Chr5g0396491 | 32.450 | 151 | 95 | 3 | 227 | 372 | 329 | 477 | 4.82e-15 | 76.3 |
| Msa1059920 | MtrunA17_Chr4g0038851 | 31.333 | 150 | 98 | 3 | 227 | 372 | 320 | 468 | 6.78e-15 | 75.9 |
| Msa1059920 | MtrunA17_Chr2g0328371 | 26.882 | 186 | 126 | 3 | 147 | 326 | 66 | 247 | 1.28e-14 | 73.2 |
| Msa1059920 | MtrunA17_Chr5g0401421 | 25.283 | 265 | 160 | 5 | 146 | 372 | 181 | 445 | 1.64e-14 | 74.7 |
| Msa1059920 | MtrunA17_Chr3g0085681 | 31.507 | 146 | 98 | 2 | 229 | 372 | 290 | 435 | 2.12e-14 | 74.3 |
| Msa1059920 | MtrunA17_Chr4g0039661 | 30.734 | 218 | 137 | 7 | 161 | 372 | 345 | 554 | 5.52e-14 | 73.2 |
| Msa1059920 | MtrunA17_Chr2g0294461 | 27.004 | 237 | 161 | 6 | 144 | 372 | 352 | 584 | 1.58e-13 | 72.0 |
| Msa1059920 | MtrunA17_Chr3g0085361 | 30.345 | 145 | 100 | 1 | 229 | 372 | 205 | 349 | 1.59e-13 | 71.2 |
| Msa1059920 | MtrunA17_Chr4g0053901 | 23.431 | 239 | 153 | 3 | 164 | 372 | 229 | 467 | 4.85e-13 | 70.1 |
| Msa1059920 | MtrunA17_Chr1g0194621 | 25.322 | 233 | 165 | 4 | 144 | 372 | 290 | 517 | 3.44e-12 | 67.8 |
| Msa1059920 | MtrunA17_Chr2g0294471 | 26.761 | 213 | 146 | 5 | 165 | 372 | 368 | 575 | 8.09e-12 | 66.6 |
| Msa1059920 | MtrunA17_Chr2g0328361 | 22.951 | 244 | 162 | 4 | 132 | 372 | 394 | 614 | 2.29e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1059920 | AT5G52510.1 | 45.692 | 383 | 138 | 6 | 52 | 372 | 265 | 639 | 6.28e-103 | 317 |
| Msa1059920 | AT1G21450.1 | 34.949 | 392 | 201 | 8 | 33 | 372 | 203 | 592 | 1.09e-59 | 203 |
| Msa1059920 | AT2G04890.1 | 31.044 | 364 | 205 | 7 | 53 | 372 | 51 | 412 | 5.64e-48 | 168 |
| Msa1059920 | AT5G48150.1 | 29.907 | 428 | 235 | 11 | 5 | 372 | 67 | 489 | 6.74e-48 | 169 |
| Msa1059920 | AT5G48150.4 | 29.907 | 428 | 235 | 11 | 5 | 372 | 67 | 489 | 6.74e-48 | 169 |
| Msa1059920 | AT5G48150.2 | 29.907 | 428 | 235 | 11 | 5 | 372 | 67 | 489 | 6.74e-48 | 169 |
| Msa1059920 | AT5G48150.3 | 29.907 | 428 | 235 | 11 | 5 | 372 | 67 | 489 | 6.74e-48 | 169 |
| Msa1059920 | AT1G50600.3 | 40.465 | 215 | 126 | 2 | 160 | 372 | 311 | 525 | 1.08e-45 | 164 |
| Msa1059920 | AT1G50600.1 | 40.465 | 215 | 126 | 2 | 160 | 372 | 382 | 596 | 1.52e-45 | 165 |
| Msa1059920 | AT1G50600.2 | 40.465 | 215 | 126 | 2 | 160 | 372 | 386 | 600 | 1.85e-45 | 165 |
| Msa1059920 | AT4G17230.1 | 29.650 | 371 | 208 | 7 | 53 | 372 | 156 | 524 | 5.37e-41 | 151 |
| Msa1059920 | AT4G17230.2 | 29.650 | 371 | 208 | 7 | 53 | 372 | 156 | 524 | 5.37e-41 | 151 |
| Msa1059920 | AT1G66350.1 | 32.569 | 218 | 135 | 5 | 160 | 372 | 295 | 505 | 2.15e-27 | 113 |
| Msa1059920 | AT3G03450.1 | 33.937 | 221 | 137 | 4 | 157 | 372 | 328 | 544 | 1.78e-26 | 110 |
| Msa1059920 | AT2G29065.1 | 27.602 | 221 | 154 | 4 | 159 | 373 | 408 | 628 | 9.07e-22 | 97.4 |
| Msa1059920 | AT5G17490.1 | 29.258 | 229 | 153 | 4 | 149 | 372 | 291 | 515 | 1.85e-21 | 96.3 |
| Msa1059920 | AT3G50650.1 | 31.696 | 224 | 136 | 6 | 161 | 372 | 323 | 541 | 5.06e-21 | 95.1 |
| Msa1059920 | AT2G29060.2 | 25.822 | 213 | 154 | 2 | 165 | 373 | 443 | 655 | 1.40e-20 | 94.0 |
| Msa1059920 | AT2G29060.1 | 25.943 | 212 | 153 | 2 | 165 | 372 | 480 | 691 | 1.52e-20 | 94.0 |
| Msa1059920 | AT1G07530.1 | 25.229 | 218 | 160 | 2 | 159 | 373 | 548 | 765 | 1.52e-20 | 94.0 |
| Msa1059920 | AT1G14920.1 | 30.275 | 218 | 140 | 5 | 161 | 372 | 317 | 528 | 5.87e-20 | 91.7 |
| Msa1059920 | AT2G01570.1 | 31.081 | 222 | 141 | 5 | 157 | 372 | 365 | 580 | 6.67e-20 | 91.7 |
| Msa1059920 | AT3G46600.2 | 27.230 | 213 | 148 | 3 | 165 | 372 | 160 | 370 | 1.62e-19 | 89.4 |
| Msa1059920 | AT5G66770.1 | 30.909 | 220 | 139 | 4 | 161 | 372 | 369 | 583 | 4.33e-19 | 89.4 |
| Msa1059920 | AT3G46600.3 | 27.230 | 213 | 148 | 3 | 165 | 372 | 336 | 546 | 4.96e-19 | 89.0 |
| Msa1059920 | AT3G46600.1 | 26.364 | 220 | 155 | 3 | 158 | 372 | 361 | 578 | 5.74e-19 | 89.0 |
| Msa1059920 | AT2G37650.2 | 24.424 | 217 | 161 | 2 | 159 | 372 | 484 | 700 | 5.40e-18 | 86.3 |
| Msa1059920 | AT2G37650.1 | 24.424 | 217 | 161 | 2 | 159 | 372 | 496 | 712 | 5.92e-18 | 85.9 |
| Msa1059920 | AT5G59450.1 | 25.822 | 213 | 153 | 4 | 165 | 372 | 385 | 597 | 9.37e-18 | 85.1 |
| Msa1059920 | AT3G54220.1 | 28.241 | 216 | 142 | 6 | 161 | 372 | 443 | 649 | 6.19e-17 | 82.8 |
| Msa1059920 | AT1G07520.3 | 23.077 | 221 | 164 | 4 | 159 | 373 | 474 | 694 | 8.26e-16 | 79.3 |
| Msa1059920 | AT1G07520.1 | 23.077 | 221 | 164 | 4 | 159 | 373 | 473 | 693 | 8.87e-16 | 79.3 |
| Msa1059920 | AT4G37650.1 | 27.126 | 247 | 155 | 7 | 147 | 372 | 286 | 528 | 1.15e-15 | 79.0 |
| Msa1059920 | AT1G07520.2 | 23.077 | 221 | 164 | 4 | 159 | 373 | 309 | 529 | 1.36e-15 | 78.6 |
| Msa1059920 | AT1G07520.4 | 23.077 | 221 | 164 | 4 | 159 | 373 | 309 | 529 | 1.36e-15 | 78.6 |
| Msa1059920 | AT1G63100.2 | 31.844 | 179 | 118 | 4 | 161 | 337 | 428 | 604 | 1.89e-15 | 78.2 |
| Msa1059920 | AT1G63100.1 | 31.844 | 179 | 118 | 4 | 161 | 337 | 403 | 579 | 2.25e-15 | 78.2 |
| Msa1059920 | AT1G50420.1 | 30.667 | 150 | 99 | 3 | 227 | 372 | 330 | 478 | 2.38e-15 | 77.8 |
| Msa1059920 | AT5G41920.1 | 28.182 | 220 | 136 | 9 | 161 | 372 | 194 | 399 | 2.72e-13 | 71.2 |
| Msa1059920 | AT3G49950.1 | 26.404 | 178 | 123 | 3 | 201 | 373 | 234 | 408 | 2.21e-12 | 68.6 |
Find 68 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACCATTGGAGAACTTT+TGG | 0.217573 | 7_2:-47162632 | Msa1059920:CDS |
| CTCTCACTGTTGCATCTTCT+TGG | 0.219398 | 7_2:-47162021 | Msa1059920:CDS |
| CCCAAGCATTGTCACAGTTT+TGG | 0.223353 | 7_2:-47162404 | Msa1059920:CDS |
| TGCAATTTCTGAAGGCAAAA+TGG | 0.230620 | 7_2:-47163676 | Msa1059920:CDS |
| TTGCTTCAAGATCTCTTTCA+TGG | 0.245962 | 7_2:-47163460 | Msa1059920:CDS |
| GAGAGATTAAAGCTTGAAAA+AGG | 0.266629 | 7_2:-47162268 | Msa1059920:CDS |
| GACTTCAAGGATTGCGATAT+TGG | 0.275042 | 7_2:+47163434 | None:intergenic |
| GAGTTAGTTCGGTGAGATTT+AGG | 0.277013 | 7_2:+47162560 | None:intergenic |
| CGTGCACGCATGAGCATGGC+TGG | 0.308371 | 7_2:-47162166 | Msa1059920:CDS |
| GGTAGAGAAGCTGAGAGTTT+AGG | 0.329057 | 7_2:-47162610 | Msa1059920:CDS |
| TTTAGTGACGTAGTGGAAAA+AGG | 0.349234 | 7_2:+47163768 | None:intergenic |
| TGGCTGAACAATTCCGCAAC+TGG | 0.355488 | 7_2:+47163525 | None:intergenic |
| AAAATTTGATAGTTGGTTAG+TGG | 0.360184 | 7_2:-47163601 | Msa1059920:CDS |
| TGGAGTTTGCTTTGGTTGGA+TGG | 0.363970 | 7_2:-47162050 | Msa1059920:CDS |
| AAAGGAGGTGAGAACGAAAT+AGG | 0.375268 | 7_2:+47163786 | None:intergenic |
| GAGTTGACTCGGCATGTTCT+TGG | 0.375716 | 7_2:+47163505 | None:intergenic |
| CAAAACTAAAATTTGATAGT+TGG | 0.391003 | 7_2:-47163608 | Msa1059920:CDS |
| TCCGTTGACACGCTCTCGTC+TGG | 0.391830 | 7_2:+47162469 | None:intergenic |
| CAATGACTCGCGAGTTAGTT+CGG | 0.393659 | 7_2:+47162549 | None:intergenic |
| ATGGTGGAGTTTGCTTTGGT+TGG | 0.406060 | 7_2:-47162054 | Msa1059920:CDS |
| GCACATTAATTCTGCTACCT+TGG | 0.406516 | 7_2:+47162086 | None:intergenic |
| AGTTTCCATTAGCGATTGTT+TGG | 0.414050 | 7_2:+47163704 | None:intergenic |
| CCAAAACTGTGACAATGCTT+GGG | 0.425816 | 7_2:+47162404 | None:intergenic |
| GGAGTTTGCTTTGGTTGGAT+GGG | 0.429128 | 7_2:-47162049 | Msa1059920:CDS |
| TGTTTCTGACCATTCGTTGT+TGG | 0.431066 | 7_2:+47163851 | None:intergenic |
| AAGCTGAGAGTTTAGGAATC+GGG | 0.432375 | 7_2:-47162603 | Msa1059920:CDS |
| AACAATTCCGCAACTGGAGG+TGG | 0.434762 | 7_2:+47163531 | None:intergenic |
| TCCAAAACTGTGACAATGCT+TGG | 0.439492 | 7_2:+47162403 | None:intergenic |
| AACAAGAATTTGAAAACCAT+TGG | 0.448528 | 7_2:-47162643 | Msa1059920:CDS |
| CAGTAACTTTCCGACTCATC+GGG | 0.453689 | 7_2:+47162131 | None:intergenic |
| CCATTAGTTTCACGCGTGGC+TGG | 0.465057 | 7_2:-47162355 | Msa1059920:CDS |
| TCAGTAACTTTCCGACTCAT+CGG | 0.466009 | 7_2:+47162130 | None:intergenic |
| GAGAATGGTGGAGTTTGCTT+TGG | 0.469489 | 7_2:-47162058 | Msa1059920:CDS |
| GTGTATGTGAGAAACTAGAT+AGG | 0.478094 | 7_2:+47163637 | None:intergenic |
| TCGGTGAGATTTAGGTTCAC+TGG | 0.483877 | 7_2:+47162568 | None:intergenic |
| GAAGCTGAGAGTTTAGGAAT+CGG | 0.488612 | 7_2:-47162604 | Msa1059920:CDS |
| CCAGCCACGCGTGAAACTAA+TGG | 0.497181 | 7_2:+47162355 | None:intergenic |
| TCTACCCAAAAGTTCTCCAA+TGG | 0.528471 | 7_2:+47162627 | None:intergenic |
| GTGGCGTGCACGCATGAGCA+TGG | 0.530408 | 7_2:-47162170 | Msa1059920:CDS |
| ACCAGACGAGAGCGTGTCAA+CGG | 0.534077 | 7_2:-47162470 | Msa1059920:CDS |
| AAGGGAGGGATCGTGTGGGA+AGG | 0.540426 | 7_2:-47162210 | Msa1059920:CDS |
| GCTGGTGAAACAATAGATGA+AGG | 0.542748 | 7_2:+47163738 | None:intergenic |
| TGTTTGGAAAACTCAGAAGC+TGG | 0.544411 | 7_2:+47163720 | None:intergenic |
| TGCAGTTGCTTGTGAAGGGA+GGG | 0.563266 | 7_2:-47162224 | Msa1059920:CDS |
| ACTGCCACTGCAATTTCTGA+AGG | 0.580795 | 7_2:-47163684 | Msa1059920:CDS |
| ATTAATGTGCATGAAGAGAA+TGG | 0.586916 | 7_2:-47162073 | Msa1059920:CDS |
| AGAATCTATTAAATTCGCGA+TGG | 0.593228 | 7_2:-47162305 | Msa1059920:CDS |
| GTGCACGCATGAGCATGGCT+GGG | 0.597641 | 7_2:-47162165 | Msa1059920:CDS |
| AGATGAATTTAGTGACGTAG+TGG | 0.599046 | 7_2:+47163761 | None:intergenic |
| TTGTGAAGGGAGGGATCGTG+TGG | 0.600325 | 7_2:-47162215 | Msa1059920:CDS |
| TTAGATTAAACCCGATGAGT+CGG | 0.600593 | 7_2:-47162141 | Msa1059920:CDS |
| AGAAATGCAGTTGCTTGTGA+AGG | 0.600882 | 7_2:-47162229 | Msa1059920:CDS |
| ATGCAGTTGCTTGTGAAGGG+AGG | 0.602267 | 7_2:-47162225 | Msa1059920:CDS |
| TGAAAATCCACCTCCAGTTG+CGG | 0.610781 | 7_2:-47163538 | Msa1059920:CDS |
| CAAAACTGTGACAATGCTTG+GGG | 0.612898 | 7_2:+47162405 | None:intergenic |
| AAAGAGAAGTTGAGTTGACT+CGG | 0.617772 | 7_2:+47163494 | None:intergenic |
| TTATGAACTCCAACAACGAA+TGG | 0.626464 | 7_2:-47163860 | Msa1059920:CDS |
| TGACGAAGAAGCGTGTCACG+TGG | 0.628901 | 7_2:+47162442 | None:intergenic |
| CTGAACAATTCCGCAACTGG+AGG | 0.643441 | 7_2:+47163528 | None:intergenic |
| GAGTCGGAAAGTTACTGAGT+CGG | 0.645991 | 7_2:-47162125 | Msa1059920:CDS |
| AGGCAAAATGGATTATGCGA+AGG | 0.646229 | 7_2:-47163664 | Msa1059920:CDS |
| AACACCATTAGTTTCACGCG+TGG | 0.652299 | 7_2:-47162359 | Msa1059920:CDS |
| GAAATGCAGTTGCTTGTGAA+GGG | 0.657022 | 7_2:-47162228 | Msa1059920:CDS |
| GTAACTTCAAGACTCATCCA+AGG | 0.679472 | 7_2:-47162103 | Msa1059920:CDS |
| TTTGCCTTCAGAAATTGCAG+TGG | 0.681099 | 7_2:+47163680 | None:intergenic |
| TGTGAAGGGAGGGATCGTGT+GGG | 0.691594 | 7_2:-47162214 | Msa1059920:CDS |
| GTTGAAGATCACGACTGTGA+CGG | 0.707788 | 7_2:-47162677 | Msa1059920:intron |
| AATGTGCATGAAGAGAATGG+TGG | 0.709482 | 7_2:-47162070 | Msa1059920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATAAATTTTTATTTAATG+AGG | + | chr7_2:47162834-47162853 | None:intergenic | 10.0% |
| !!! | GTATAAATTTTTATTTAATG+AGG | + | chr7_2:47162834-47162853 | None:intergenic | 10.0% |
| !!! | AACTATCAAATTTTAGTTTT+GGG | + | chr7_2:47162266-47162285 | None:intergenic | 15.0% |
| !!! | ACAATCTATTATTTTAAGAA+GGG | + | chr7_2:47162811-47162830 | None:intergenic | 15.0% |
| !!! | AACTATCAAATTTTAGTTTT+GGG | + | chr7_2:47162266-47162285 | None:intergenic | 15.0% |
| !!! | ACAATCTATTATTTTAAGAA+GGG | + | chr7_2:47162811-47162830 | None:intergenic | 15.0% |
| !!! | CAACTATCAAATTTTAGTTT+TGG | + | chr7_2:47162267-47162286 | None:intergenic | 20.0% |
| !!! | CAAAACTAAAATTTGATAGT+TGG | - | chr7_2:47162265-47162284 | Msa1059920:CDS | 20.0% |
| !!! | ATTTTAAACTATACTCCTTT+TGG | - | chr7_2:47162724-47162743 | Msa1059920:intron | 20.0% |
| !!! | CAATCTATTATTTTAAGAAG+GGG | + | chr7_2:47162810-47162829 | None:intergenic | 20.0% |
| !!! | GACAATCTATTATTTTAAGA+AGG | + | chr7_2:47162812-47162831 | None:intergenic | 20.0% |
| !! | GTCTTTATATTTCAAAAGTA+TGG | + | chr7_2:47162940-47162959 | None:intergenic | 20.0% |
| !!! | CAACTATCAAATTTTAGTTT+TGG | + | chr7_2:47162267-47162286 | None:intergenic | 20.0% |
| !!! | CAAAACTAAAATTTGATAGT+TGG | - | chr7_2:47162265-47162284 | Msa1059920:CDS | 20.0% |
| !!! | ATTTTAAACTATACTCCTTT+TGG | - | chr7_2:47162724-47162743 | Msa1059920:intron | 20.0% |
| !!! | CAATCTATTATTTTAAGAAG+GGG | + | chr7_2:47162810-47162829 | None:intergenic | 20.0% |
| !!! | GACAATCTATTATTTTAAGA+AGG | + | chr7_2:47162812-47162831 | None:intergenic | 20.0% |
| !! | GTCTTTATATTTCAAAAGTA+TGG | + | chr7_2:47162940-47162959 | None:intergenic | 20.0% |
| !! | AAAATTTGATAGTTGGTTAG+TGG | - | chr7_2:47162272-47162291 | Msa1059920:CDS | 25.0% |
| !! | ATGTATTAGTTTGGTTATGT+GGG | + | chr7_2:47162672-47162691 | None:intergenic | 25.0% |
| !! | AATGTATTAGTTTGGTTATG+TGG | + | chr7_2:47162673-47162692 | None:intergenic | 25.0% |
| ! | TAACCAAACTAATACATTGA+AGG | - | chr7_2:47162675-47162694 | Msa1059920:intron | 25.0% |
| ! | TTACCTTCAATGTATTAGTT+TGG | + | chr7_2:47162681-47162700 | None:intergenic | 25.0% |
| ! | AACAAGAATTTGAAAACCAT+TGG | - | chr7_2:47163230-47163249 | Msa1059920:intron | 25.0% |
| !! | AAAATTTGATAGTTGGTTAG+TGG | - | chr7_2:47162272-47162291 | Msa1059920:CDS | 25.0% |
| !! | ATGTATTAGTTTGGTTATGT+GGG | + | chr7_2:47162672-47162691 | None:intergenic | 25.0% |
| !! | AATGTATTAGTTTGGTTATG+TGG | + | chr7_2:47162673-47162692 | None:intergenic | 25.0% |
| ! | TAACCAAACTAATACATTGA+AGG | - | chr7_2:47162675-47162694 | Msa1059920:intron | 25.0% |
| ! | TTACCTTCAATGTATTAGTT+TGG | + | chr7_2:47162681-47162700 | None:intergenic | 25.0% |
| ! | AACAAGAATTTGAAAACCAT+TGG | - | chr7_2:47163230-47163249 | Msa1059920:intron | 25.0% |
| !! | ACGAAATAGGTTTTTGGATA+GGG | + | chr7_2:47162077-47162096 | None:intergenic | 30.0% |
| !! | AACGAAATAGGTTTTTGGAT+AGG | + | chr7_2:47162078-47162097 | None:intergenic | 30.0% |
| !! | TGTGTTGTGGATTTTGATAT+TGG | - | chr7_2:47162498-47162517 | Msa1059920:CDS | 30.0% |
| !! | GTGGATTTTGATATTGGTAA+TGG | - | chr7_2:47162504-47162523 | Msa1059920:CDS | 30.0% |
| ATTGCTTGAAATAGAAAGCA+AGG | + | chr7_2:47162602-47162621 | None:intergenic | 30.0% | |
| ! | TCAACGTACAATTTAAAGTG+GGG | + | chr7_2:47162648-47162667 | None:intergenic | 30.0% |
| ! | GTCAACGTACAATTTAAAGT+GGG | + | chr7_2:47162649-47162668 | None:intergenic | 30.0% |
| ! | TGTATTAGTTTGGTTATGTG+GGG | + | chr7_2:47162671-47162690 | None:intergenic | 30.0% |
| ATGTGTAAATGCATTTGAGA+TGG | - | chr7_2:47162896-47162915 | Msa1059920:intron | 30.0% | |
| !! | GATCCAGAAATTTTAACATG+TGG | + | chr7_2:47163126-47163145 | None:intergenic | 30.0% |
| ! | AAAACCATTGGAGAACTTTT+GGG | - | chr7_2:47163242-47163261 | Msa1059920:intron | 30.0% |
| AGAATCTATTAAATTCGCGA+TGG | - | chr7_2:47163568-47163587 | Msa1059920:CDS | 30.0% | |
| GAGAGATTAAAGCTTGAAAA+AGG | - | chr7_2:47163605-47163624 | Msa1059920:CDS | 30.0% | |
| ATTAATGTGCATGAAGAGAA+TGG | - | chr7_2:47163800-47163819 | Msa1059920:CDS | 30.0% | |
| !! | ACGAAATAGGTTTTTGGATA+GGG | + | chr7_2:47162077-47162096 | None:intergenic | 30.0% |
| !! | AACGAAATAGGTTTTTGGAT+AGG | + | chr7_2:47162078-47162097 | None:intergenic | 30.0% |
| !! | TGTGTTGTGGATTTTGATAT+TGG | - | chr7_2:47162498-47162517 | Msa1059920:CDS | 30.0% |
| !! | GTGGATTTTGATATTGGTAA+TGG | - | chr7_2:47162504-47162523 | Msa1059920:CDS | 30.0% |
| ATTGCTTGAAATAGAAAGCA+AGG | + | chr7_2:47162602-47162621 | None:intergenic | 30.0% | |
| ! | TCAACGTACAATTTAAAGTG+GGG | + | chr7_2:47162648-47162667 | None:intergenic | 30.0% |
| ! | GTCAACGTACAATTTAAAGT+GGG | + | chr7_2:47162649-47162668 | None:intergenic | 30.0% |
| ! | TGTATTAGTTTGGTTATGTG+GGG | + | chr7_2:47162671-47162690 | None:intergenic | 30.0% |
| ATGTGTAAATGCATTTGAGA+TGG | - | chr7_2:47162896-47162915 | Msa1059920:intron | 30.0% | |
| !! | GATCCAGAAATTTTAACATG+TGG | + | chr7_2:47163126-47163145 | None:intergenic | 30.0% |
| ! | AAAACCATTGGAGAACTTTT+GGG | - | chr7_2:47163242-47163261 | Msa1059920:intron | 30.0% |
| AGAATCTATTAAATTCGCGA+TGG | - | chr7_2:47163568-47163587 | Msa1059920:CDS | 30.0% | |
| GAGAGATTAAAGCTTGAAAA+AGG | - | chr7_2:47163605-47163624 | Msa1059920:CDS | 30.0% | |
| ATTAATGTGCATGAAGAGAA+TGG | - | chr7_2:47163800-47163819 | Msa1059920:CDS | 30.0% | |
| ! | GTGAGAACGAAATAGGTTTT+TGG | + | chr7_2:47162083-47162102 | None:intergenic | 35.0% |
| ! | TTTAGTGACGTAGTGGAAAA+AGG | + | chr7_2:47162108-47162127 | None:intergenic | 35.0% |
| AGATGAATTTAGTGACGTAG+TGG | + | chr7_2:47162115-47162134 | None:intergenic | 35.0% | |
| ! | GTTTTCCAAACAATCGCTAA+TGG | - | chr7_2:47162164-47162183 | Msa1059920:CDS | 35.0% |
| AGTTTCCATTAGCGATTGTT+TGG | + | chr7_2:47162172-47162191 | None:intergenic | 35.0% | |
| ! | TGCAATTTCTGAAGGCAAAA+TGG | - | chr7_2:47162197-47162216 | Msa1059920:CDS | 35.0% |
| GTGTATGTGAGAAACTAGAT+AGG | + | chr7_2:47162239-47162258 | None:intergenic | 35.0% | |
| !! | AAAGAGAAGTTGAGTTGACT+CGG | + | chr7_2:47162382-47162401 | None:intergenic | 35.0% |
| TTGCTTCAAGATCTCTTTCA+TGG | - | chr7_2:47162413-47162432 | Msa1059920:CDS | 35.0% | |
| ! | TCACACTCTTTGTTGTATCT+TGG | + | chr7_2:47162470-47162489 | None:intergenic | 35.0% |
| TGAAATAGAAAGCAAGGAGT+GGG | + | chr7_2:47162596-47162615 | None:intergenic | 35.0% | |
| TTGAAATAGAAAGCAAGGAG+TGG | + | chr7_2:47162597-47162616 | None:intergenic | 35.0% | |
| GGTCAACGTACAATTTAAAG+TGG | + | chr7_2:47162650-47162669 | None:intergenic | 35.0% | |
| ! | TGCTTACATTTGAGACCAAA+AGG | + | chr7_2:47162742-47162761 | None:intergenic | 35.0% |
| !! | CCAGAAATTTTAACATGTGG+TGG | + | chr7_2:47163123-47163142 | None:intergenic | 35.0% |
| CCACCACATGTTAAAATTTC+TGG | - | chr7_2:47163120-47163139 | Msa1059920:intron | 35.0% | |
| ! | AAAATTTCTGGATCAGTCAC+TGG | - | chr7_2:47163132-47163151 | Msa1059920:intron | 35.0% |
| ! | GAAAACCATTGGAGAACTTT+TGG | - | chr7_2:47163241-47163260 | Msa1059920:intron | 35.0% |
| TTAGATTAAACCCGATGAGT+CGG | - | chr7_2:47163732-47163751 | Msa1059920:CDS | 35.0% | |
| ! | GTGAGAACGAAATAGGTTTT+TGG | + | chr7_2:47162083-47162102 | None:intergenic | 35.0% |
| ! | TTTAGTGACGTAGTGGAAAA+AGG | + | chr7_2:47162108-47162127 | None:intergenic | 35.0% |
| AGATGAATTTAGTGACGTAG+TGG | + | chr7_2:47162115-47162134 | None:intergenic | 35.0% | |
| ! | GTTTTCCAAACAATCGCTAA+TGG | - | chr7_2:47162164-47162183 | Msa1059920:CDS | 35.0% |
| AGTTTCCATTAGCGATTGTT+TGG | + | chr7_2:47162172-47162191 | None:intergenic | 35.0% | |
| ! | TGCAATTTCTGAAGGCAAAA+TGG | - | chr7_2:47162197-47162216 | Msa1059920:CDS | 35.0% |
| GTGTATGTGAGAAACTAGAT+AGG | + | chr7_2:47162239-47162258 | None:intergenic | 35.0% | |
| !! | AAAGAGAAGTTGAGTTGACT+CGG | + | chr7_2:47162382-47162401 | None:intergenic | 35.0% |
| TTGCTTCAAGATCTCTTTCA+TGG | - | chr7_2:47162413-47162432 | Msa1059920:CDS | 35.0% | |
| ! | TCACACTCTTTGTTGTATCT+TGG | + | chr7_2:47162470-47162489 | None:intergenic | 35.0% |
| TGAAATAGAAAGCAAGGAGT+GGG | + | chr7_2:47162596-47162615 | None:intergenic | 35.0% | |
| TTGAAATAGAAAGCAAGGAG+TGG | + | chr7_2:47162597-47162616 | None:intergenic | 35.0% | |
| GGTCAACGTACAATTTAAAG+TGG | + | chr7_2:47162650-47162669 | None:intergenic | 35.0% | |
| ! | TGCTTACATTTGAGACCAAA+AGG | + | chr7_2:47162742-47162761 | None:intergenic | 35.0% |
| !! | CCAGAAATTTTAACATGTGG+TGG | + | chr7_2:47163123-47163142 | None:intergenic | 35.0% |
| CCACCACATGTTAAAATTTC+TGG | - | chr7_2:47163120-47163139 | Msa1059920:intron | 35.0% | |
| ! | AAAATTTCTGGATCAGTCAC+TGG | - | chr7_2:47163132-47163151 | Msa1059920:intron | 35.0% |
| ! | GAAAACCATTGGAGAACTTT+TGG | - | chr7_2:47163241-47163260 | Msa1059920:intron | 35.0% |
| TTAGATTAAACCCGATGAGT+CGG | - | chr7_2:47163732-47163751 | Msa1059920:CDS | 35.0% | |
| ! | TGTTTCTGACCATTCGTTGT+TGG | + | chr7_2:47162025-47162044 | None:intergenic | 40.0% |
| AAAGGAGGTGAGAACGAAAT+AGG | + | chr7_2:47162090-47162109 | None:intergenic | 40.0% | |
| GCTGGTGAAACAATAGATGA+AGG | + | chr7_2:47162138-47162157 | None:intergenic | 40.0% | |
| TGTTTGGAAAACTCAGAAGC+TGG | + | chr7_2:47162156-47162175 | None:intergenic | 40.0% | |
| TTTGCCTTCAGAAATTGCAG+TGG | + | chr7_2:47162196-47162215 | None:intergenic | 40.0% | |
| !! | AGGCAAAATGGATTATGCGA+AGG | - | chr7_2:47162209-47162228 | Msa1059920:CDS | 40.0% |
| GACTTCAAGGATTGCGATAT+TGG | + | chr7_2:47162442-47162461 | None:intergenic | 40.0% | |
| TATCTTGGAATGCGACTTCA+AGG | + | chr7_2:47162455-47162474 | None:intergenic | 40.0% | |
| TGTGAAGAATCTCTGTGTTG+TGG | - | chr7_2:47162485-47162504 | Msa1059920:CDS | 40.0% | |
| GGATGCAAGTGTATCACATT+GGG | - | chr7_2:47162560-47162579 | Msa1059920:CDS | 40.0% | |
| GATGCAAGTGTATCACATTG+GGG | - | chr7_2:47162561-47162580 | Msa1059920:CDS | 40.0% | |
| GAAATAGAAAGCAAGGAGTG+GGG | + | chr7_2:47162595-47162614 | None:intergenic | 40.0% | |
| TCTACCCAAAAGTTCTCCAA+TGG | + | chr7_2:47163249-47163268 | None:intergenic | 40.0% | |
| GAAGCTGAGAGTTTAGGAAT+CGG | - | chr7_2:47163269-47163288 | Msa1059920:intron | 40.0% | |
| AAGCTGAGAGTTTAGGAATC+GGG | - | chr7_2:47163270-47163289 | Msa1059920:intron | 40.0% | |
| ! | GAGTTAGTTCGGTGAGATTT+AGG | + | chr7_2:47163316-47163335 | None:intergenic | 40.0% |
| CAAAACTGTGACAATGCTTG+GGG | + | chr7_2:47163471-47163490 | None:intergenic | 40.0% | |
| CCAAAACTGTGACAATGCTT+GGG | + | chr7_2:47163472-47163491 | None:intergenic | 40.0% | |
| TCCAAAACTGTGACAATGCT+TGG | + | chr7_2:47163473-47163492 | None:intergenic | 40.0% | |
| AGAAATGCAGTTGCTTGTGA+AGG | - | chr7_2:47163644-47163663 | Msa1059920:CDS | 40.0% | |
| GAAATGCAGTTGCTTGTGAA+GGG | - | chr7_2:47163645-47163664 | Msa1059920:CDS | 40.0% | |
| TCAGTAACTTTCCGACTCAT+CGG | + | chr7_2:47163746-47163765 | None:intergenic | 40.0% | |
| GTAACTTCAAGACTCATCCA+AGG | - | chr7_2:47163770-47163789 | Msa1059920:CDS | 40.0% | |
| GCACATTAATTCTGCTACCT+TGG | + | chr7_2:47163790-47163809 | None:intergenic | 40.0% | |
| AATGTGCATGAAGAGAATGG+TGG | - | chr7_2:47163803-47163822 | Msa1059920:CDS | 40.0% | |
| ! | TGTTTCTGACCATTCGTTGT+TGG | + | chr7_2:47162025-47162044 | None:intergenic | 40.0% |
| AAAGGAGGTGAGAACGAAAT+AGG | + | chr7_2:47162090-47162109 | None:intergenic | 40.0% | |
| GCTGGTGAAACAATAGATGA+AGG | + | chr7_2:47162138-47162157 | None:intergenic | 40.0% | |
| TGTTTGGAAAACTCAGAAGC+TGG | + | chr7_2:47162156-47162175 | None:intergenic | 40.0% | |
| TTTGCCTTCAGAAATTGCAG+TGG | + | chr7_2:47162196-47162215 | None:intergenic | 40.0% | |
| !! | AGGCAAAATGGATTATGCGA+AGG | - | chr7_2:47162209-47162228 | Msa1059920:CDS | 40.0% |
| GACTTCAAGGATTGCGATAT+TGG | + | chr7_2:47162442-47162461 | None:intergenic | 40.0% | |
| TATCTTGGAATGCGACTTCA+AGG | + | chr7_2:47162455-47162474 | None:intergenic | 40.0% | |
| TGTGAAGAATCTCTGTGTTG+TGG | - | chr7_2:47162485-47162504 | Msa1059920:CDS | 40.0% | |
| GGATGCAAGTGTATCACATT+GGG | - | chr7_2:47162560-47162579 | Msa1059920:CDS | 40.0% | |
| GATGCAAGTGTATCACATTG+GGG | - | chr7_2:47162561-47162580 | Msa1059920:CDS | 40.0% | |
| GAAATAGAAAGCAAGGAGTG+GGG | + | chr7_2:47162595-47162614 | None:intergenic | 40.0% | |
| TCTACCCAAAAGTTCTCCAA+TGG | + | chr7_2:47163249-47163268 | None:intergenic | 40.0% | |
| GAAGCTGAGAGTTTAGGAAT+CGG | - | chr7_2:47163269-47163288 | Msa1059920:intron | 40.0% | |
| AAGCTGAGAGTTTAGGAATC+GGG | - | chr7_2:47163270-47163289 | Msa1059920:intron | 40.0% | |
| ! | GAGTTAGTTCGGTGAGATTT+AGG | + | chr7_2:47163316-47163335 | None:intergenic | 40.0% |
| CAAAACTGTGACAATGCTTG+GGG | + | chr7_2:47163471-47163490 | None:intergenic | 40.0% | |
| CCAAAACTGTGACAATGCTT+GGG | + | chr7_2:47163472-47163491 | None:intergenic | 40.0% | |
| TCCAAAACTGTGACAATGCT+TGG | + | chr7_2:47163473-47163492 | None:intergenic | 40.0% | |
| AGAAATGCAGTTGCTTGTGA+AGG | - | chr7_2:47163644-47163663 | Msa1059920:CDS | 40.0% | |
| GAAATGCAGTTGCTTGTGAA+GGG | - | chr7_2:47163645-47163664 | Msa1059920:CDS | 40.0% | |
| TCAGTAACTTTCCGACTCAT+CGG | + | chr7_2:47163746-47163765 | None:intergenic | 40.0% | |
| GTAACTTCAAGACTCATCCA+AGG | - | chr7_2:47163770-47163789 | Msa1059920:CDS | 40.0% | |
| GCACATTAATTCTGCTACCT+TGG | + | chr7_2:47163790-47163809 | None:intergenic | 40.0% | |
| AATGTGCATGAAGAGAATGG+TGG | - | chr7_2:47163803-47163822 | Msa1059920:CDS | 40.0% | |
| ! | AGTGACGTAGTGGAAAAAGG+AGG | + | chr7_2:47162105-47162124 | None:intergenic | 45.0% |
| ACTGCCACTGCAATTTCTGA+AGG | - | chr7_2:47162189-47162208 | Msa1059920:CDS | 45.0% | |
| TGAAAATCCACCTCCAGTTG+CGG | - | chr7_2:47162335-47162354 | Msa1059920:CDS | 45.0% | |
| TACATCAATCTGCTCCAAGC+AGG | - | chr7_2:47162534-47162553 | Msa1059920:CDS | 45.0% | |
| CGGATGCAAGTGTATCACAT+TGG | - | chr7_2:47162559-47162578 | Msa1059920:CDS | 45.0% | |
| TTAGACTCGCATGGAGTTCT+TGG | + | chr7_2:47163160-47163179 | None:intergenic | 45.0% | |
| GAACTCCATGCGAGTCTAAA+TGG | - | chr7_2:47163161-47163180 | Msa1059920:intron | 45.0% | |
| GTGAACCATTTAGACTCGCA+TGG | + | chr7_2:47163169-47163188 | None:intergenic | 45.0% | |
| GTCGTGATCTTCAACATTGC+TGG | + | chr7_2:47163191-47163210 | None:intergenic | 45.0% | |
| GTTGAAGATCACGACTGTGA+CGG | - | chr7_2:47163196-47163215 | Msa1059920:intron | 45.0% | |
| GGTAGAGAAGCTGAGAGTTT+AGG | - | chr7_2:47163263-47163282 | Msa1059920:intron | 45.0% | |
| ! | TCGGTGAGATTTAGGTTCAC+TGG | + | chr7_2:47163308-47163327 | None:intergenic | 45.0% |
| CAATGACTCGCGAGTTAGTT+CGG | + | chr7_2:47163327-47163346 | None:intergenic | 45.0% | |
| !! | CCCAAGCATTGTCACAGTTT+TGG | - | chr7_2:47163469-47163488 | Msa1059920:CDS | 45.0% |
| ! | AACACCATTAGTTTCACGCG+TGG | - | chr7_2:47163514-47163533 | Msa1059920:CDS | 45.0% |
| !! | GTGGGAAGGTGTGAAGTTTT+TGG | - | chr7_2:47163677-47163696 | Msa1059920:CDS | 45.0% |
| !!! | GGTGTGAAGTTTTTGGCAAG+TGG | - | chr7_2:47163684-47163703 | Msa1059920:CDS | 45.0% |
| CAGTAACTTTCCGACTCATC+GGG | + | chr7_2:47163745-47163764 | None:intergenic | 45.0% | |
| GAGTCGGAAAGTTACTGAGT+CGG | - | chr7_2:47163748-47163767 | Msa1059920:CDS | 45.0% | |
| ! | GAGAATGGTGGAGTTTGCTT+TGG | - | chr7_2:47163815-47163834 | Msa1059920:CDS | 45.0% |
| ! | ATGGTGGAGTTTGCTTTGGT+TGG | - | chr7_2:47163819-47163838 | Msa1059920:CDS | 45.0% |
| ! | TGGAGTTTGCTTTGGTTGGA+TGG | - | chr7_2:47163823-47163842 | Msa1059920:CDS | 45.0% |
| ! | GGAGTTTGCTTTGGTTGGAT+GGG | - | chr7_2:47163824-47163843 | Msa1059920:CDS | 45.0% |
| CTCTCACTGTTGCATCTTCT+TGG | - | chr7_2:47163852-47163871 | Msa1059920:CDS | 45.0% | |
| ! | AGTGACGTAGTGGAAAAAGG+AGG | + | chr7_2:47162105-47162124 | None:intergenic | 45.0% |
| ACTGCCACTGCAATTTCTGA+AGG | - | chr7_2:47162189-47162208 | Msa1059920:CDS | 45.0% | |
| TGAAAATCCACCTCCAGTTG+CGG | - | chr7_2:47162335-47162354 | Msa1059920:CDS | 45.0% | |
| TACATCAATCTGCTCCAAGC+AGG | - | chr7_2:47162534-47162553 | Msa1059920:CDS | 45.0% | |
| CGGATGCAAGTGTATCACAT+TGG | - | chr7_2:47162559-47162578 | Msa1059920:CDS | 45.0% | |
| TTAGACTCGCATGGAGTTCT+TGG | + | chr7_2:47163160-47163179 | None:intergenic | 45.0% | |
| GAACTCCATGCGAGTCTAAA+TGG | - | chr7_2:47163161-47163180 | Msa1059920:intron | 45.0% | |
| GTGAACCATTTAGACTCGCA+TGG | + | chr7_2:47163169-47163188 | None:intergenic | 45.0% | |
| GTCGTGATCTTCAACATTGC+TGG | + | chr7_2:47163191-47163210 | None:intergenic | 45.0% | |
| GTTGAAGATCACGACTGTGA+CGG | - | chr7_2:47163196-47163215 | Msa1059920:intron | 45.0% | |
| GGTAGAGAAGCTGAGAGTTT+AGG | - | chr7_2:47163263-47163282 | Msa1059920:intron | 45.0% | |
| ! | TCGGTGAGATTTAGGTTCAC+TGG | + | chr7_2:47163308-47163327 | None:intergenic | 45.0% |
| CAATGACTCGCGAGTTAGTT+CGG | + | chr7_2:47163327-47163346 | None:intergenic | 45.0% | |
| !! | CCCAAGCATTGTCACAGTTT+TGG | - | chr7_2:47163469-47163488 | Msa1059920:CDS | 45.0% |
| ! | AACACCATTAGTTTCACGCG+TGG | - | chr7_2:47163514-47163533 | Msa1059920:CDS | 45.0% |
| !! | GTGGGAAGGTGTGAAGTTTT+TGG | - | chr7_2:47163677-47163696 | Msa1059920:CDS | 45.0% |
| !!! | GGTGTGAAGTTTTTGGCAAG+TGG | - | chr7_2:47163684-47163703 | Msa1059920:CDS | 45.0% |
| CAGTAACTTTCCGACTCATC+GGG | + | chr7_2:47163745-47163764 | None:intergenic | 45.0% | |
| GAGTCGGAAAGTTACTGAGT+CGG | - | chr7_2:47163748-47163767 | Msa1059920:CDS | 45.0% | |
| ! | GAGAATGGTGGAGTTTGCTT+TGG | - | chr7_2:47163815-47163834 | Msa1059920:CDS | 45.0% |
| ! | ATGGTGGAGTTTGCTTTGGT+TGG | - | chr7_2:47163819-47163838 | Msa1059920:CDS | 45.0% |
| ! | TGGAGTTTGCTTTGGTTGGA+TGG | - | chr7_2:47163823-47163842 | Msa1059920:CDS | 45.0% |
| ! | GGAGTTTGCTTTGGTTGGAT+GGG | - | chr7_2:47163824-47163843 | Msa1059920:CDS | 45.0% |
| CTCTCACTGTTGCATCTTCT+TGG | - | chr7_2:47163852-47163871 | Msa1059920:CDS | 45.0% | |
| AACAATTCCGCAACTGGAGG+TGG | + | chr7_2:47162345-47162364 | None:intergenic | 50.0% | |
| CTGAACAATTCCGCAACTGG+AGG | + | chr7_2:47162348-47162367 | None:intergenic | 50.0% | |
| TGGCTGAACAATTCCGCAAC+TGG | + | chr7_2:47162351-47162370 | None:intergenic | 50.0% | |
| !! | GAGTTGACTCGGCATGTTCT+TGG | + | chr7_2:47162371-47162390 | None:intergenic | 50.0% |
| ATGCAGTTGCTTGTGAAGGG+AGG | - | chr7_2:47163648-47163667 | Msa1059920:CDS | 50.0% | |
| TGCAGTTGCTTGTGAAGGGA+GGG | - | chr7_2:47163649-47163668 | Msa1059920:CDS | 50.0% | |
| AACAATTCCGCAACTGGAGG+TGG | + | chr7_2:47162345-47162364 | None:intergenic | 50.0% | |
| CTGAACAATTCCGCAACTGG+AGG | + | chr7_2:47162348-47162367 | None:intergenic | 50.0% | |
| TGGCTGAACAATTCCGCAAC+TGG | + | chr7_2:47162351-47162370 | None:intergenic | 50.0% | |
| !! | GAGTTGACTCGGCATGTTCT+TGG | + | chr7_2:47162371-47162390 | None:intergenic | 50.0% |
| ATGCAGTTGCTTGTGAAGGG+AGG | - | chr7_2:47163648-47163667 | Msa1059920:CDS | 50.0% | |
| TGCAGTTGCTTGTGAAGGGA+GGG | - | chr7_2:47163649-47163668 | Msa1059920:CDS | 50.0% | |
| CAATCTGCTCCAAGCAGGCA+CGG | - | chr7_2:47162539-47162558 | Msa1059920:CDS | 55.0% | |
| ! | ACCAGACGAGAGCGTGTCAA+CGG | - | chr7_2:47163403-47163422 | Msa1059920:intron | 55.0% |
| ! | TGACGAAGAAGCGTGTCACG+TGG | + | chr7_2:47163434-47163453 | None:intergenic | 55.0% |
| CCAGCCACGCGTGAAACTAA+TGG | + | chr7_2:47163521-47163540 | None:intergenic | 55.0% | |
| ! | CCATTAGTTTCACGCGTGGC+TGG | - | chr7_2:47163518-47163537 | Msa1059920:CDS | 55.0% |
| TTGTGAAGGGAGGGATCGTG+TGG | - | chr7_2:47163658-47163677 | Msa1059920:CDS | 55.0% | |
| TGTGAAGGGAGGGATCGTGT+GGG | - | chr7_2:47163659-47163678 | Msa1059920:CDS | 55.0% | |
| CAATCTGCTCCAAGCAGGCA+CGG | - | chr7_2:47162539-47162558 | Msa1059920:CDS | 55.0% | |
| ! | ACCAGACGAGAGCGTGTCAA+CGG | - | chr7_2:47163403-47163422 | Msa1059920:intron | 55.0% |
| ! | TGACGAAGAAGCGTGTCACG+TGG | + | chr7_2:47163434-47163453 | None:intergenic | 55.0% |
| CCAGCCACGCGTGAAACTAA+TGG | + | chr7_2:47163521-47163540 | None:intergenic | 55.0% | |
| ! | CCATTAGTTTCACGCGTGGC+TGG | - | chr7_2:47163518-47163537 | Msa1059920:CDS | 55.0% |
| TTGTGAAGGGAGGGATCGTG+TGG | - | chr7_2:47163658-47163677 | Msa1059920:CDS | 55.0% | |
| TGTGAAGGGAGGGATCGTGT+GGG | - | chr7_2:47163659-47163678 | Msa1059920:CDS | 55.0% | |
| CACTTGCATCCGTGCCTGCT+TGG | + | chr7_2:47162551-47162570 | None:intergenic | 60.0% | |
| TCCGTTGACACGCTCTCGTC+TGG | + | chr7_2:47163407-47163426 | None:intergenic | 60.0% | |
| AAGGGAGGGATCGTGTGGGA+AGG | - | chr7_2:47163663-47163682 | Msa1059920:CDS | 60.0% | |
| GTGCACGCATGAGCATGGCT+GGG | - | chr7_2:47163708-47163727 | Msa1059920:CDS | 60.0% | |
| CACTTGCATCCGTGCCTGCT+TGG | + | chr7_2:47162551-47162570 | None:intergenic | 60.0% | |
| TCCGTTGACACGCTCTCGTC+TGG | + | chr7_2:47163407-47163426 | None:intergenic | 60.0% | |
| AAGGGAGGGATCGTGTGGGA+AGG | - | chr7_2:47163663-47163682 | Msa1059920:CDS | 60.0% | |
| GTGCACGCATGAGCATGGCT+GGG | - | chr7_2:47163708-47163727 | Msa1059920:CDS | 60.0% | |
| GTGGCGTGCACGCATGAGCA+TGG | - | chr7_2:47163703-47163722 | Msa1059920:CDS | 65.0% | |
| CGTGCACGCATGAGCATGGC+TGG | - | chr7_2:47163707-47163726 | Msa1059920:CDS | 65.0% | |
| GTGGCGTGCACGCATGAGCA+TGG | - | chr7_2:47163703-47163722 | Msa1059920:CDS | 65.0% | |
| CGTGCACGCATGAGCATGGC+TGG | - | chr7_2:47163707-47163726 | Msa1059920:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 47162015 | 47163880 | 47162015 | ID=Msa1059920;Name=Msa1059920 |
| chr7_2 | mRNA | 47162015 | 47163880 | 47162015 | ID=Msa1059920-mRNA-1;Parent=Msa1059920;Name=Msa1059920-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|373 |
| chr7_2 | exon | 47163437 | 47163880 | 47163437 | ID=Msa1059920-mRNA-1:exon:8488;Parent=Msa1059920-mRNA-1 |
| chr7_2 | exon | 47162015 | 47162692 | 47162015 | ID=Msa1059920-mRNA-1:exon:8487;Parent=Msa1059920-mRNA-1 |
| chr7_2 | CDS | 47163437 | 47163880 | 47163437 | ID=Msa1059920-mRNA-1:cds;Parent=Msa1059920-mRNA-1 |
| chr7_2 | CDS | 47162015 | 47162692 | 47162015 | ID=Msa1059920-mRNA-1:cds;Parent=Msa1059920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
