Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060770 | XP_003623058.1 | 94.660 | 206 | 10 | 1 | 1 | 205 | 1 | 206 | 4.09e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060770 | sp|Q9SIB4|WOX3_ARATH | 85.135 | 74 | 11 | 0 | 1 | 74 | 1 | 74 | 4.36e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060770 | G7L3H0 | 94.660 | 206 | 10 | 1 | 1 | 205 | 1 | 206 | 1.95e-128 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1060770 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060770 | MtrunA17_Chr7g0238431 | 94.660 | 206 | 10 | 1 | 1 | 205 | 1 | 206 | 3.76e-132 | 372 |
| Msa1060770 | MtrunA17_Chr4g0043891 | 71.429 | 70 | 20 | 0 | 1 | 70 | 1 | 70 | 3.07e-29 | 110 |
| Msa1060770 | MtrunA17_Chr1g0153171 | 71.642 | 67 | 19 | 0 | 4 | 70 | 86 | 152 | 5.10e-28 | 107 |
| Msa1060770 | MtrunA17_Chr8g0392991 | 74.627 | 67 | 17 | 0 | 6 | 72 | 94 | 160 | 6.75e-28 | 109 |
| Msa1060770 | MtrunA17_Chr5g0436661 | 69.841 | 63 | 19 | 0 | 8 | 70 | 33 | 95 | 4.09e-27 | 103 |
| Msa1060770 | MtrunA17_Chr4g0031341 | 65.625 | 64 | 22 | 0 | 8 | 71 | 25 | 88 | 3.46e-24 | 97.8 |
| Msa1060770 | MtrunA17_Chr5g0405351 | 41.722 | 151 | 54 | 6 | 6 | 125 | 28 | 175 | 1.71e-23 | 96.7 |
| Msa1060770 | MtrunA17_Chr8g0385441 | 74.074 | 54 | 14 | 0 | 19 | 72 | 93 | 146 | 2.70e-21 | 87.8 |
| Msa1060770 | MtrunA17_Chr3g0125111 | 72.222 | 54 | 15 | 0 | 19 | 72 | 91 | 144 | 1.01e-20 | 86.3 |
| Msa1060770 | MtrunA17_Chr2g0283141 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 5.48e-14 | 71.2 |
| Msa1060770 | MtrunA17_Chr7g0223471 | 39.286 | 84 | 51 | 0 | 2 | 85 | 41 | 124 | 5.89e-14 | 70.9 |
| Msa1060770 | MtrunA17_Chr1g0212511 | 46.774 | 62 | 33 | 0 | 8 | 69 | 85 | 146 | 1.90e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060770 | AT2G28610.1 | 85.135 | 74 | 11 | 0 | 1 | 74 | 1 | 74 | 4.44e-40 | 139 |
| Msa1060770 | AT3G18010.1 | 73.134 | 67 | 18 | 0 | 6 | 72 | 74 | 140 | 1.47e-27 | 108 |
| Msa1060770 | AT1G46480.2 | 67.164 | 67 | 22 | 0 | 4 | 70 | 86 | 152 | 1.06e-26 | 102 |
| Msa1060770 | AT3G11260.1 | 69.697 | 66 | 19 | 1 | 8 | 73 | 24 | 88 | 1.17e-26 | 102 |
| Msa1060770 | AT1G46480.1 | 67.164 | 67 | 22 | 0 | 4 | 70 | 86 | 152 | 6.06e-26 | 102 |
| Msa1060770 | AT5G59340.1 | 69.697 | 66 | 20 | 0 | 6 | 71 | 12 | 77 | 1.43e-25 | 101 |
| Msa1060770 | AT5G05770.1 | 65.079 | 63 | 22 | 0 | 8 | 70 | 29 | 91 | 2.07e-25 | 97.4 |
| Msa1060770 | AT2G17950.1 | 67.692 | 65 | 20 | 1 | 6 | 69 | 36 | 100 | 4.82e-23 | 95.9 |
| Msa1060770 | AT2G01500.1 | 74.545 | 55 | 14 | 0 | 8 | 62 | 61 | 115 | 4.19e-22 | 92.8 |
| Msa1060770 | AT5G45980.1 | 47.761 | 67 | 35 | 0 | 3 | 69 | 50 | 116 | 7.66e-14 | 70.5 |
| Msa1060770 | AT2G33880.1 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 9.04e-14 | 70.9 |
| Msa1060770 | AT2G33880.2 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 1.01e-13 | 70.5 |
| Msa1060770 | AT1G20700.2 | 48.333 | 60 | 31 | 0 | 8 | 67 | 33 | 92 | 5.31e-13 | 65.5 |
| Msa1060770 | AT1G20700.3 | 48.333 | 60 | 31 | 0 | 8 | 67 | 95 | 154 | 1.41e-12 | 65.5 |
| Msa1060770 | AT1G20700.1 | 48.333 | 60 | 31 | 0 | 8 | 67 | 95 | 154 | 1.57e-12 | 65.5 |
| Msa1060770 | AT4G35550.1 | 48.333 | 60 | 31 | 0 | 8 | 67 | 99 | 158 | 7.26e-12 | 64.3 |
Find 52 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAATAATCAACAAAGTT+TGG | 0.279486 | 7_2:-49464269 | Msa1060770:CDS |
| TATAATAATCAACAAAGTTT+GGG | 0.281468 | 7_2:-49464268 | Msa1060770:CDS |
| ACTACTCACCTTTCTTTCTA+TGG | 0.291926 | 7_2:-49465115 | Msa1060770:CDS |
| TCTTTCTATGGTAGGATAGA+AGG | 0.296957 | 7_2:-49465103 | Msa1060770:CDS |
| TGCTTTGTGTTCCGGGTGCT+TGG | 0.297098 | 7_2:-49460976 | Msa1060770:CDS |
| GACATTGCATTCAACAACTA+TGG | 0.308834 | 7_2:-49464235 | Msa1060770:CDS |
| GCTTTGTGTTCCGGGTGCTT+GGG | 0.318599 | 7_2:-49460975 | Msa1060770:CDS |
| CAAAAGTACTACCAACAAAA+TGG | 0.345039 | 7_2:+49464915 | None:intergenic |
| TGAACAACTTATGATCTTAG+AGG | 0.352994 | 7_2:-49465191 | Msa1060770:CDS |
| GGCGCTAGGCGCCCAGTGCT+TGG | 0.364566 | 7_2:-49461047 | Msa1060770:CDS |
| AGAAAATTCTTGCTCTAAGC+AGG | 0.378694 | 7_2:+49460999 | None:intergenic |
| ATCATAAGTTGTTCAGTTGT+AGG | 0.386722 | 7_2:+49465199 | None:intergenic |
| CTTTGTGTTCCGGGTGCTTG+GGG | 0.414330 | 7_2:-49460974 | Msa1060770:CDS |
| TGCAACATGAAGGTGCTTCA+TGG | 0.419089 | 7_2:+49464188 | None:intergenic |
| GATGACTTGGTCAGTTCCTG+TGG | 0.432852 | 7_2:-49460951 | Msa1060770:CDS |
| GTGCTTGGACTGGCATGTCC+TGG | 0.436178 | 7_2:-49461032 | Msa1060770:CDS |
| TCTTGTGCATTAGATCCAAA+AGG | 0.476916 | 7_2:+49464887 | None:intergenic |
| CTATCCTACCATAGAAAGAA+AGG | 0.481976 | 7_2:+49465107 | None:intergenic |
| TCATAAGTTGTTCAGTTGTA+GGG | 0.482629 | 7_2:+49465200 | None:intergenic |
| AAGGGGCAATCAATTGCAAA+TGG | 0.485059 | 7_2:-49464297 | Msa1060770:CDS |
| CTCCACCTGGTTCATCAAGA+TGG | 0.487034 | 7_2:-49465225 | Msa1060770:CDS |
| GGACATGCCAGTCCAAGCAC+TGG | 0.489181 | 7_2:+49461035 | None:intergenic |
| TTGCATTCAACAACTATGGT+TGG | 0.492556 | 7_2:-49464231 | Msa1060770:CDS |
| GGGATAGACAGAAGTTAAGA+AGG | 0.493019 | 7_2:-49465042 | Msa1060770:CDS |
| CTATTGGTTTCAGAATCATA+AGG | 0.495866 | 7_2:-49465068 | Msa1060770:CDS |
| CAACTATGGTTGGACACTCA+TGG | 0.499731 | 7_2:-49464221 | Msa1060770:CDS |
| CAGTGCTAGCACTGCAACTG+AGG | 0.499736 | 7_2:-49461068 | Msa1060770:CDS |
| GGTTTCAGAATCATAAGGCT+AGG | 0.507758 | 7_2:-49465063 | Msa1060770:CDS |
| TTGATTCTTGTTGTTGTGAG+AGG | 0.523160 | 7_2:+49464136 | None:intergenic |
| ATGACTTGGTCAGTTCCTGT+GGG | 0.527454 | 7_2:-49460950 | Msa1060770:CDS |
| AGCACTGCAACTGAGGCGCT+AGG | 0.528060 | 7_2:-49461061 | Msa1060770:CDS |
| CTCACCTTTCTTTCTATGGT+AGG | 0.541469 | 7_2:-49465111 | Msa1060770:CDS |
| TGCTGAATTTGAACAGCACT+AGG | 0.547085 | 7_2:+49465142 | None:intergenic |
| CTTGTGCATTAGATCCAAAA+GGG | 0.549702 | 7_2:+49464888 | None:intergenic |
| GTTTCAGAATCATAAGGCTA+GGG | 0.551754 | 7_2:-49465062 | Msa1060770:CDS |
| GTAGCTGCAAACACATCAGA+AGG | 0.562740 | 7_2:-49464316 | Msa1060770:CDS |
| GACATGCCAGTCCAAGCACT+GGG | 0.563665 | 7_2:+49461036 | None:intergenic |
| AGAGGTTTAGTGCAACATGA+AGG | 0.572055 | 7_2:+49464178 | None:intergenic |
| TTAGAGGAACTGTATAGAAG+TGG | 0.579089 | 7_2:-49465175 | Msa1060770:CDS |
| GAAAATTCTTGCTCTAAGCA+GGG | 0.581840 | 7_2:+49461000 | None:intergenic |
| ATAATAATCAACAAAGTTTG+GGG | 0.587690 | 7_2:-49464267 | Msa1060770:CDS |
| AAAAGATCAAGAGTCTTGAG+AGG | 0.601753 | 7_2:+49464160 | None:intergenic |
| GGGCTCCATCTTGATGAACC+AGG | 0.608838 | 7_2:+49465220 | None:intergenic |
| TAGCTGCAAACACATCAGAA+GGG | 0.621365 | 7_2:-49464315 | Msa1060770:CDS |
| AAAATTCTTGCTCTAAGCAG+GGG | 0.621915 | 7_2:+49461001 | None:intergenic |
| AGCTGCAAACACATCAGAAG+GGG | 0.625629 | 7_2:-49464314 | Msa1060770:CDS |
| TTTGTGTTCCGGGTGCTTGG+GGG | 0.628431 | 7_2:-49460973 | Msa1060770:CDS |
| GCATCATCAAAAGAACCCAC+AGG | 0.665055 | 7_2:+49460935 | None:intergenic |
| AAATCAATAATGTCTCCACC+TGG | 0.671020 | 7_2:-49465238 | None:intergenic |
| TAATAATCAACAAAGTTTGG+GGG | 0.671349 | 7_2:-49464266 | Msa1060770:CDS |
| AAATTCTTGCTCTAAGCAGG+GGG | 0.675047 | 7_2:+49461002 | None:intergenic |
| CTCCATCTTGATGAACCAGG+TGG | 0.692416 | 7_2:+49465223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTAATACATATATA+GGG | - | chr7_2:49461712-49461731 | Msa1060770:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTAGGA+TGG | - | chr7_2:49462669-49462688 | Msa1060770:intron | 10.0% |
| !!! | AATTTGCTATTAAAAAAAAT+TGG | - | chr7_2:49462953-49462972 | Msa1060770:intron | 10.0% |
| !!! | TTAACATATATATTTTTGTT+AGG | - | chr7_2:49463195-49463214 | Msa1060770:intron | 10.0% |
| !!! | TATATTTTTTGTTATATTGT+TGG | + | chr7_2:49463493-49463512 | None:intergenic | 10.0% |
| !! | AGTAATTTAAGTATATAATT+AGG | - | chr7_2:49463565-49463584 | Msa1060770:intron | 10.0% |
| !!! | TTACATTTTTTAAAAGATAA+AGG | - | chr7_2:49463628-49463647 | Msa1060770:intron | 10.0% |
| !! | TATTAGAAATATATGAATTA+AGG | - | chr7_2:49464070-49464089 | Msa1060770:intron | 10.0% |
| !! | ATTAGAAATATATGAATTAA+GGG | - | chr7_2:49464071-49464090 | Msa1060770:intron | 10.0% |
| !!! | AAATTTTTTGACTTAAATCA+TGG | - | chr7_2:49461440-49461459 | Msa1060770:intron | 15.0% |
| !! | CATTCAATTAATACATATAT+AGG | - | chr7_2:49461711-49461730 | Msa1060770:intron | 15.0% |
| !! | TTATAATAATCAACAAAGTT+TGG | - | chr7_2:49461879-49461898 | Msa1060770:intron | 15.0% |
| !! | TATAATAATCAACAAAGTTT+GGG | - | chr7_2:49461880-49461899 | Msa1060770:intron | 15.0% |
| !! | AAAAGTTGAAATAATTAAGA+TGG | - | chr7_2:49462382-49462401 | Msa1060770:intron | 15.0% |
| !!! | GTGCTTTTTTTTTTTTTTTT+AGG | - | chr7_2:49462665-49462684 | Msa1060770:intron | 15.0% |
| !! | CATGTATTTATTTATTCTAA+AGG | + | chr7_2:49462883-49462902 | None:intergenic | 15.0% |
| !!! | TCACATTTTTTTACATTATT+AGG | - | chr7_2:49463136-49463155 | Msa1060770:intron | 15.0% |
| !!! | TTTTTTTATATACTCGTTTT+TGG | - | chr7_2:49463259-49463278 | Msa1060770:intron | 15.0% |
| !! | TTATTTGTATTGAAAATTGA+TGG | - | chr7_2:49463731-49463750 | Msa1060770:intron | 15.0% |
| !! | CAAATAATATCCTAAAATTT+GGG | + | chr7_2:49464011-49464030 | None:intergenic | 15.0% |
| !! | ACAAATAATATCCTAAAATT+TGG | + | chr7_2:49464012-49464031 | None:intergenic | 15.0% |
| !!! | AGAAATGATTTTAAATACTT+TGG | - | chr7_2:49464964-49464983 | Msa1060770:CDS | 15.0% |
| !!! | GAAATGATTTTAAATACTTT+GGG | - | chr7_2:49464965-49464984 | Msa1060770:CDS | 15.0% |
| !!! | GTATTTAAATATTCACTTTT+GGG | - | chr7_2:49465007-49465026 | Msa1060770:CDS | 15.0% |
| !! | AGAAAAAGAAGAAGAAAAAT+AGG | + | chr7_2:49461381-49461400 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACTCT+TGG | - | chr7_2:49461410-49461429 | Msa1060770:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | + | chr7_2:49461501-49461520 | None:intergenic | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | + | chr7_2:49461547-49461566 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | + | chr7_2:49461608-49461627 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | - | chr7_2:49461607-49461626 | Msa1060770:intron | 20.0% |
| !! | ATAATAATCAACAAAGTTTG+GGG | - | chr7_2:49461881-49461900 | Msa1060770:intron | 20.0% |
| !! | CATTATTAACCTAATTCTTT+AGG | - | chr7_2:49462095-49462114 | Msa1060770:intron | 20.0% |
| !! | TTATAATGTCCTAAAGAATT+AGG | + | chr7_2:49462107-49462126 | None:intergenic | 20.0% |
| !!! | TTTTTGGTATAAAAATCCTA+TGG | - | chr7_2:49462229-49462248 | Msa1060770:intron | 20.0% |
| !!! | TTTTGGTATAAAAATCCTAT+GGG | - | chr7_2:49462230-49462249 | Msa1060770:intron | 20.0% |
| !!! | TTTTCATTATATGATCTTCT+AGG | + | chr7_2:49462299-49462318 | None:intergenic | 20.0% |
| !!! | ATAGACTTTAAAGATATTAC+AGG | + | chr7_2:49462499-49462518 | None:intergenic | 20.0% |
| !! | CAAGCAAATTAATAGTTATT+TGG | + | chr7_2:49462914-49462933 | None:intergenic | 20.0% |
| !! | TGATATTGTAGTTTATTGAT+TGG | - | chr7_2:49462988-49463007 | Msa1060770:intron | 20.0% |
| !!! | AGTTTATTGATTGGTTTTTT+TGG | - | chr7_2:49462997-49463016 | Msa1060770:intron | 20.0% |
| !! | AAAAAAATATGGAGTAACAA+GGG | + | chr7_2:49463233-49463252 | None:intergenic | 20.0% |
| !! | TAAAAAAATATGGAGTAACA+AGG | + | chr7_2:49463234-49463253 | None:intergenic | 20.0% |
| !! | TAACGTTTGAAAATTATGAA+AGG | - | chr7_2:49463361-49463380 | Msa1060770:intron | 20.0% |
| !!! | TTGAAAATTGATGGTATTTT+TGG | - | chr7_2:49463740-49463759 | Msa1060770:intron | 20.0% |
| !! | CTTATTAAATTGGAAGAAAT+GGG | + | chr7_2:49463875-49463894 | None:intergenic | 20.0% |
| !! | ACTTATTAAATTGGAAGAAA+TGG | + | chr7_2:49463876-49463895 | None:intergenic | 20.0% |
| !! | ATTTCTTCCAATTTAATAAG+TGG | - | chr7_2:49463875-49463894 | Msa1060770:intron | 20.0% |
| !! | TTTGATGTGTTTGAATTATT+TGG | - | chr7_2:49464035-49464054 | Msa1060770:intron | 20.0% |
| !!! | TATATGAATTAAGGGTATTT+TGG | - | chr7_2:49464079-49464098 | Msa1060770:intron | 20.0% |
| !! | TAGAAGTAAATAGTAATACA+AGG | - | chr7_2:49464188-49464207 | Msa1060770:CDS | 20.0% |
| !! | AGAAGTAAATAGTAATACAA+GGG | - | chr7_2:49464189-49464208 | Msa1060770:CDS | 20.0% |
| !! | CTTATATATCCATATCAATT+GGG | + | chr7_2:49464295-49464314 | None:intergenic | 20.0% |
| !! | TCTTATATATCCATATCAAT+TGG | + | chr7_2:49464296-49464315 | None:intergenic | 20.0% |
| !! | ACTATGTTAATTGAAGTATA+AGG | - | chr7_2:49464893-49464912 | Msa1060770:CDS | 20.0% |
| !!! | GTATTTAAAATCATTTCTCA+AGG | + | chr7_2:49464962-49464981 | None:intergenic | 20.0% |
| !!! | GGTATTTAAATATTCACTTT+TGG | - | chr7_2:49465006-49465025 | Msa1060770:CDS | 20.0% |
| !! | AAGGCAAAAATGTTTTCTAT+TGG | - | chr7_2:49461064-49461083 | Msa1060770:CDS | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | + | chr7_2:49461371-49461390 | None:intergenic | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | - | chr7_2:49461495-49461514 | Msa1060770:intron | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | - | chr7_2:49461613-49461632 | Msa1060770:intron | 25.0% |
| ! | TCTACTTTCTTCATTTGATA+TGG | - | chr7_2:49461797-49461816 | Msa1060770:intron | 25.0% |
| ! | TCTTCATTTGATATGGATTT+AGG | - | chr7_2:49461804-49461823 | Msa1060770:intron | 25.0% |
| ! | CTTCATTTGATATGGATTTA+GGG | - | chr7_2:49461805-49461824 | Msa1060770:intron | 25.0% |
| ! | TAATAATCAACAAAGTTTGG+GGG | - | chr7_2:49461882-49461901 | Msa1060770:intron | 25.0% |
| ! | TCACATAGAATTATGAGATT+TGG | + | chr7_2:49462075-49462094 | None:intergenic | 25.0% |
| !! | GATAGAAATGCAATACTTTT+TGG | - | chr7_2:49462213-49462232 | Msa1060770:intron | 25.0% |
| ! | TTAAGATGGAATTTACATAC+CGG | - | chr7_2:49462396-49462415 | Msa1060770:intron | 25.0% |
| !! | CACTAAACTATCTTTATTTC+CGG | + | chr7_2:49462418-49462437 | None:intergenic | 25.0% |
| ! | ATAAAGATAGTTTAGTGATG+AGG | - | chr7_2:49462421-49462440 | Msa1060770:intron | 25.0% |
| !! | TTGTATGTATTGATAGAGAA+TGG | - | chr7_2:49462467-49462486 | Msa1060770:intron | 25.0% |
| !! | CTTTAAAGATATTACAGGAT+GGG | + | chr7_2:49462494-49462513 | None:intergenic | 25.0% |
| !! | ACTTTAAAGATATTACAGGA+TGG | + | chr7_2:49462495-49462514 | None:intergenic | 25.0% |
| ! | TTTCTCTCATGCAAAATAAA+AGG | - | chr7_2:49462566-49462585 | Msa1060770:intron | 25.0% |
| ! | ATTGTTAGTTAAATTGGTCA+TGG | - | chr7_2:49462750-49462769 | Msa1060770:intron | 25.0% |
| ! | TTTAAACGAGAAAATCATGT+AGG | - | chr7_2:49462842-49462861 | Msa1060770:intron | 25.0% |
| ! | TATATTAACTAGCACAAAGA+CGG | - | chr7_2:49463300-49463319 | Msa1060770:intron | 25.0% |
| ! | GTCATTGAAATAGTTAATCA+TGG | + | chr7_2:49463469-49463488 | None:intergenic | 25.0% |
| ! | GTGAAAACCACTTATTAAAT+TGG | + | chr7_2:49463885-49463904 | None:intergenic | 25.0% |
| ! | GTTTGAATTATTTGGATAGT+TGG | - | chr7_2:49464043-49464062 | Msa1060770:intron | 25.0% |
| !!! | ACATTTTAGCAATTTTGAAG+TGG | - | chr7_2:49464119-49464138 | Msa1060770:intron | 25.0% |
| ! | GAATAATGACTAAGTCTAAT+AGG | - | chr7_2:49464253-49464272 | Msa1060770:CDS | 25.0% |
| ! | AGTGATAGTCTTCAAAAATT+AGG | - | chr7_2:49464315-49464334 | Msa1060770:CDS | 25.0% |
| ! | GTGATAGTCTTCAAAAATTA+GGG | - | chr7_2:49464316-49464335 | Msa1060770:CDS | 25.0% |
| ! | AAAGAGAAAGAAGATCTAAA+GGG | - | chr7_2:49464404-49464423 | Msa1060770:intron | 25.0% |
| ! | CACAAAATATTCGTCATAAT+TGG | + | chr7_2:49464622-49464641 | None:intergenic | 25.0% |
| !! | TATTTTGTGTATGTGAAAAG+TGG | - | chr7_2:49464633-49464652 | Msa1060770:intron | 25.0% |
| ! | AATCTAAGTTTGATCATGAT+AGG | - | chr7_2:49464680-49464699 | Msa1060770:intron | 25.0% |
| ! | GATTATGTTTAAATCCATGT+TGG | - | chr7_2:49464829-49464848 | Msa1060770:intron | 25.0% |
| ! | TTTAAATACTTTGGGTGTAT+TGG | - | chr7_2:49464973-49464992 | Msa1060770:CDS | 25.0% |
| ! | TTAAATACTTTGGGTGTATT+GGG | - | chr7_2:49464974-49464993 | Msa1060770:CDS | 25.0% |
| TCATAAGTTGTTCAGTTGTA+GGG | + | chr7_2:49460951-49460970 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | + | chr7_2:49460952-49460971 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | - | chr7_2:49460957-49460976 | Msa1060770:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | - | chr7_2:49461080-49461099 | Msa1060770:intron | 30.0% |
| ! | ATGACTAGTAACCATTTTGT+TGG | - | chr7_2:49461222-49461241 | Msa1060770:intron | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | + | chr7_2:49461236-49461255 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | - | chr7_2:49461234-49461253 | Msa1060770:intron | 30.0% |
| AAAGCTAGGTGAGTTAAAAA+AGG | + | chr7_2:49461292-49461311 | None:intergenic | 30.0% | |
| ATTACCTCAAAAAGAAAGCT+AGG | + | chr7_2:49461306-49461325 | None:intergenic | 30.0% | |
| TGAATGCAAACAATTTCACT+TGG | - | chr7_2:49461665-49461684 | Msa1060770:intron | 30.0% | |
| ! | AATCCAATCCTTTTGTGTAA+TGG | + | chr7_2:49461691-49461710 | None:intergenic | 30.0% |
| ATAGATGGTAAATTTCAGCA+TGG | + | chr7_2:49462130-49462149 | None:intergenic | 30.0% | |
| !! | CTTCTAGGATAGAATAATCT+TGG | + | chr7_2:49462284-49462303 | None:intergenic | 30.0% |
| AGGTTAATGCTCAATTTGTA+TGG | - | chr7_2:49462441-49462460 | Msa1060770:intron | 30.0% | |
| TGCAAAATAAAAGGACTTCA+TGG | - | chr7_2:49462575-49462594 | Msa1060770:intron | 30.0% | |
| TTCGAGTGAATAAATTGAAG+AGG | - | chr7_2:49462639-49462658 | Msa1060770:intron | 30.0% | |
| GCAACGATTGTTAGTTAAAT+TGG | - | chr7_2:49462744-49462763 | Msa1060770:intron | 30.0% | |
| ATTTGTGTACTTAAGCTTAG+TGG | - | chr7_2:49462801-49462820 | Msa1060770:intron | 30.0% | |
| AATAAAAAGAGCGGAAAGAT+GGG | + | chr7_2:49463337-49463356 | None:intergenic | 30.0% | |
| ! | TGTGTAACATCCCAAATTTT+AGG | - | chr7_2:49463998-49464017 | Msa1060770:intron | 30.0% |
| !!! | TTTTAGCAATTTTGAAGTGG+AGG | - | chr7_2:49464122-49464141 | Msa1060770:intron | 30.0% |
| AAGTGGAGGAATATTTAATG+AGG | - | chr7_2:49464136-49464155 | Msa1060770:CDS | 30.0% | |
| AGGGTTTAAGTGAAGTAAAA+TGG | - | chr7_2:49464208-49464227 | Msa1060770:CDS | 30.0% | |
| GGGTTTAAGTGAAGTAAAAT+GGG | - | chr7_2:49464209-49464228 | Msa1060770:CDS | 30.0% | |
| ATATCCATATCAATTGGGTT+TGG | + | chr7_2:49464290-49464309 | None:intergenic | 30.0% | |
| ATTAGGGTTGAGAAATCATT+TGG | - | chr7_2:49464332-49464351 | Msa1060770:intron | 30.0% | |
| GAAAGAGAAAGAAGATCTAA+AGG | - | chr7_2:49464403-49464422 | Msa1060770:intron | 30.0% | |
| ! | ACTAAAATGAAGGTGTAGAT+TGG | - | chr7_2:49464450-49464469 | Msa1060770:intron | 30.0% |
| TAAGTTTGATCATGATAGGT+TGG | - | chr7_2:49464684-49464703 | Msa1060770:intron | 30.0% | |
| TAAATACTTTGGGTGTATTG+GGG | - | chr7_2:49464975-49464994 | Msa1060770:CDS | 30.0% | |
| ! | AATTTTCTTGCTTTGTGTTC+CGG | - | chr7_2:49465164-49465183 | Msa1060770:CDS | 30.0% |
| TTAGAGGAACTGTATAGAAG+TGG | - | chr7_2:49460973-49460992 | Msa1060770:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | - | chr7_2:49461033-49461052 | Msa1060770:CDS | 35.0% | |
| CTATCCTACCATAGAAAGAA+AGG | + | chr7_2:49461044-49461063 | None:intergenic | 35.0% | |
| TCTTTCTATGGTAGGATAGA+AGG | - | chr7_2:49461045-49461064 | Msa1060770:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | - | chr7_2:49461086-49461105 | Msa1060770:intron | 35.0% | |
| !! | AGTACTTTTGGTTACCCTTT+TGG | - | chr7_2:49461246-49461265 | Msa1060770:intron | 35.0% |
| CTTGTGCATTAGATCCAAAA+GGG | + | chr7_2:49461263-49461282 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | + | chr7_2:49461264-49461283 | None:intergenic | 35.0% | |
| GCAGTCTGTAACTTCAATTA+CGG | - | chr7_2:49461472-49461491 | Msa1060770:intron | 35.0% | |
| GAAAATTGCGGTCAAAATTG+CGG | + | chr7_2:49461535-49461554 | None:intergenic | 35.0% | |
| GACATTGCATTCAACAACTA+TGG | - | chr7_2:49461913-49461932 | Msa1060770:intron | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | - | chr7_2:49461917-49461936 | Msa1060770:intron | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | + | chr7_2:49461991-49462010 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGTGAG+AGG | + | chr7_2:49462015-49462034 | None:intergenic | 35.0% |
| !! | TGAGATTTGGTTGATGAACA+TGG | + | chr7_2:49462062-49462081 | None:intergenic | 35.0% |
| AGGTACTCTTGGTATATAGA+TGG | + | chr7_2:49462145-49462164 | None:intergenic | 35.0% | |
| AGTACATGCATGGTTTCAAA+AGG | - | chr7_2:49462722-49462741 | Msa1060770:intron | 35.0% | |
| GTTAAATTGGTCATGGTGAT+TGG | - | chr7_2:49462757-49462776 | Msa1060770:intron | 35.0% | |
| GGAGTAACAAGGGATATTAT+AGG | + | chr7_2:49463223-49463242 | None:intergenic | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+TGG | + | chr7_2:49463338-49463357 | None:intergenic | 35.0% | |
| CGTTAACGCAATAAAAAGAG+CGG | + | chr7_2:49463346-49463365 | None:intergenic | 35.0% | |
| !! | TTCATCTCAAAAGTGCTGAA+AGG | - | chr7_2:49463772-49463791 | Msa1060770:intron | 35.0% |
| !! | TCATCTCAAAAGTGCTGAAA+GGG | - | chr7_2:49463773-49463792 | Msa1060770:intron | 35.0% |
| GAAGAAATGGGAAAACGATT+CGG | + | chr7_2:49463863-49463882 | None:intergenic | 35.0% | |
| TGAACCAAACCCAATTGATA+TGG | - | chr7_2:49464283-49464302 | Msa1060770:CDS | 35.0% | |
| AGCTTGAAGGACTAAAATGA+AGG | - | chr7_2:49464440-49464459 | Msa1060770:intron | 35.0% | |
| ! | GGCTTAACTTTTGGATTAAG+AGG | - | chr7_2:49464482-49464501 | Msa1060770:intron | 35.0% |
| ! | CTTTTGGATTAAGAGGTAAG+AGG | - | chr7_2:49464489-49464508 | Msa1060770:intron | 35.0% |
| AGAACTTATGAGCAATTGTG+TGG | - | chr7_2:49464532-49464551 | Msa1060770:intron | 35.0% | |
| TTATGAGCAATTGTGTGGTT+AGG | - | chr7_2:49464537-49464556 | Msa1060770:intron | 35.0% | |
| TATGAGCAATTGTGTGGTTA+GGG | - | chr7_2:49464538-49464557 | Msa1060770:intron | 35.0% | |
| ! | GAAGTTGTTGATGAATGATG+TGG | - | chr7_2:49464744-49464763 | Msa1060770:intron | 35.0% |
| TATTGAGTGTGTGAAAGTAG+TGG | - | chr7_2:49464794-49464813 | Msa1060770:intron | 35.0% | |
| ACAACTTAACACAACCAACA+TGG | + | chr7_2:49464846-49464865 | None:intergenic | 35.0% | |
| AAATACTTTGGGTGTATTGG+GGG | - | chr7_2:49464976-49464995 | Msa1060770:CDS | 35.0% | |
| !! | TTGATTTTGAAGAGAATCCG+AGG | - | chr7_2:49465030-49465049 | Msa1060770:CDS | 35.0% |
| ! | AAAATTCTTGCTCTAAGCAG+GGG | + | chr7_2:49465150-49465169 | None:intergenic | 35.0% |
| ! | GAAAATTCTTGCTCTAAGCA+GGG | + | chr7_2:49465151-49465170 | None:intergenic | 35.0% |
| ! | AGAAAATTCTTGCTCTAAGC+AGG | + | chr7_2:49465152-49465171 | None:intergenic | 35.0% |
| ! | ATTTTCTTGCTTTGTGTTCC+GGG | - | chr7_2:49465165-49465184 | Msa1060770:CDS | 35.0% |
| TGCTGAATTTGAACAGCACT+AGG | + | chr7_2:49461009-49461028 | None:intergenic | 40.0% | |
| CTCACCTTTCTTTCTATGGT+AGG | - | chr7_2:49461037-49461056 | Msa1060770:CDS | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | - | chr7_2:49461085-49461104 | Msa1060770:intron | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | - | chr7_2:49461106-49461125 | Msa1060770:intron | 40.0% | |
| !! | CTCACCTAGCTTTCTTTTTG+AGG | - | chr7_2:49461299-49461318 | Msa1060770:intron | 40.0% |
| TCACTTGGCCATTACACAAA+AGG | - | chr7_2:49461680-49461699 | Msa1060770:intron | 40.0% | |
| TGGCCATTACACAAAAGGAT+TGG | - | chr7_2:49461685-49461704 | Msa1060770:intron | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | - | chr7_2:49461833-49461852 | Msa1060770:intron | 40.0% | |
| AAGGGGCAATCAATTGCAAA+TGG | - | chr7_2:49461851-49461870 | Msa1060770:intron | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | + | chr7_2:49461973-49461992 | None:intergenic | 40.0% | |
| AAAGTCCTACGTACAACACT+AGG | + | chr7_2:49462165-49462184 | None:intergenic | 40.0% | |
| ! | AGTGTTGTACGTAGGACTTT+TGG | - | chr7_2:49462165-49462184 | Msa1060770:intron | 40.0% |
| GACACTTATCAAGTACCCAT+AGG | + | chr7_2:49462248-49462267 | None:intergenic | 40.0% | |
| CACTCGAGATTGACGAATAA+AGG | + | chr7_2:49462542-49462561 | None:intergenic | 40.0% | |
| AAAAGGACTTCATGGACATG+TGG | - | chr7_2:49462583-49462602 | Msa1060770:intron | 40.0% | |
| !! | CATCTCAAAAGTGCTGAAAG+GGG | - | chr7_2:49463774-49463793 | Msa1060770:intron | 40.0% |
| GAAGATCTAAAGGGAGAAAG+AGG | - | chr7_2:49464413-49464432 | Msa1060770:intron | 40.0% | |
| ! | AGCTTAGGAGGCTTAACTTT+TGG | - | chr7_2:49464473-49464492 | Msa1060770:intron | 40.0% |
| AATACTTTGGGTGTATTGGG+GGG | - | chr7_2:49464977-49464996 | Msa1060770:CDS | 40.0% | |
| AAGTGCTCAGATGTGTGTTT+GGG | + | chr7_2:49465056-49465075 | None:intergenic | 40.0% | |
| ! | AAAGTGCTCAGATGTGTGTT+TGG | + | chr7_2:49465057-49465076 | None:intergenic | 40.0% |
| ! | AAATTCTTGCTCTAAGCAGG+GGG | + | chr7_2:49465149-49465168 | None:intergenic | 40.0% |
| GTAGCTGCAAACACATCAGA+AGG | - | chr7_2:49461832-49461851 | Msa1060770:intron | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | - | chr7_2:49461834-49461853 | Msa1060770:intron | 45.0% | |
| CAACTATGGTTGGACACTCA+TGG | - | chr7_2:49461927-49461946 | Msa1060770:intron | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | + | chr7_2:49461963-49461982 | None:intergenic | 45.0% |
| CGTACAACACTAGGTACTCT+TGG | + | chr7_2:49462156-49462175 | None:intergenic | 45.0% | |
| GAGTACCTAGTGTTGTACGT+AGG | - | chr7_2:49462157-49462176 | Msa1060770:intron | 45.0% | |
| !! | TGTCTGTTGGCTCTAAGTGA+GGG | + | chr7_2:49462701-49462720 | None:intergenic | 45.0% |
| CATGCATGTACTCTGTCTGT+TGG | + | chr7_2:49462714-49462733 | None:intergenic | 45.0% | |
| CAACAGACAGAGTACATGCA+TGG | - | chr7_2:49462712-49462731 | Msa1060770:intron | 45.0% | |
| ! | GAAATGGGAAAACGATTCGG+AGG | + | chr7_2:49463860-49463879 | None:intergenic | 45.0% |
| GTGATTTCGTCGTTTGAGTG+TGG | - | chr7_2:49463935-49463954 | Msa1060770:intron | 45.0% | |
| AGAAAGAGGAGCAAGCTTGA+AGG | - | chr7_2:49464427-49464446 | Msa1060770:intron | 45.0% | |
| ! | GAAGGTGTAGATTGGAGCTT+AGG | - | chr7_2:49464458-49464477 | Msa1060770:intron | 45.0% |
| ATACTTTGGGTGTATTGGGG+GGG | - | chr7_2:49464978-49464997 | Msa1060770:CDS | 45.0% | |
| !! | ATGACTTGGTCAGTTCCTGT+GGG | - | chr7_2:49465198-49465217 | Msa1060770:CDS | 45.0% |
| GCATCATCAAAAGAACCCAC+AGG | + | chr7_2:49465216-49465235 | None:intergenic | 45.0% | |
| !! | AAAAATACATTAAAAAAATA+TGG | + | chr7_2:49463244-49463263 | None:intergenic | 5.0% |
| CTCCACCTGGTTCATCAAGA+TGG | - | chr7_2:49460923-49460942 | Msa1060770:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | + | chr7_2:49460928-49460947 | None:intergenic | 50.0% | |
| !! | CTGTCTGTTGGCTCTAAGTG+AGG | + | chr7_2:49462702-49462721 | None:intergenic | 50.0% |
| GGTGTAGATTGGAGCTTAGG+AGG | - | chr7_2:49464461-49464480 | Msa1060770:intron | 50.0% | |
| TACTTTGGGTGTATTGGGGG+GGG | - | chr7_2:49464979-49464998 | Msa1060770:CDS | 50.0% | |
| TCAGATGTGTGTTTGGGCCT+CGG | + | chr7_2:49465050-49465069 | None:intergenic | 50.0% | |
| !! | GATGACTTGGTCAGTTCCTG+TGG | - | chr7_2:49465197-49465216 | Msa1060770:CDS | 50.0% |
| GGGCTCCATCTTGATGAACC+AGG | + | chr7_2:49460931-49460950 | None:intergenic | 55.0% | |
| ACTTTGGGTGTATTGGGGGG+GGG | - | chr7_2:49464980-49464999 | Msa1060770:CDS | 55.0% | |
| CAGTGCTAGCACTGCAACTG+AGG | - | chr7_2:49465080-49465099 | Msa1060770:CDS | 55.0% | |
| GACATGCCAGTCCAAGCACT+GGG | + | chr7_2:49465115-49465134 | None:intergenic | 55.0% | |
| TGCTTTGTGTTCCGGGTGCT+TGG | - | chr7_2:49465172-49465191 | Msa1060770:CDS | 55.0% | |
| GCTTTGTGTTCCGGGTGCTT+GGG | - | chr7_2:49465173-49465192 | Msa1060770:CDS | 55.0% | |
| CTTTGTGTTCCGGGTGCTTG+GGG | - | chr7_2:49465174-49465193 | Msa1060770:CDS | 55.0% | |
| TTTGTGTTCCGGGTGCTTGG+GGG | - | chr7_2:49465175-49465194 | Msa1060770:CDS | 55.0% | |
| CTTTGGGTGTATTGGGGGGG+GGG | - | chr7_2:49464981-49465000 | Msa1060770:CDS | 60.0% | |
| TTTGGGTGTATTGGGGGGGG+GGG | - | chr7_2:49464982-49465001 | Msa1060770:CDS | 60.0% | |
| ! | AGCACTGCAACTGAGGCGCT+AGG | - | chr7_2:49465087-49465106 | Msa1060770:CDS | 60.0% |
| GGACATGCCAGTCCAAGCAC+TGG | + | chr7_2:49465116-49465135 | None:intergenic | 60.0% | |
| !! | GTGCTTGGACTGGCATGTCC+TGG | - | chr7_2:49465116-49465135 | Msa1060770:CDS | 60.0% |
| ! | CTTGCTCTAAGCAGGGGGTC+TGG | + | chr7_2:49465144-49465163 | None:intergenic | 60.0% |
| CAAGTCATCCCCCAAGCACC+CGG | + | chr7_2:49465186-49465205 | None:intergenic | 60.0% | |
| TTGGGTGTATTGGGGGGGGG+GGG | - | chr7_2:49464983-49465002 | Msa1060770:CDS | 65.0% | |
| TAGGCGCCCAGTGCTTGGAC+TGG | - | chr7_2:49465106-49465125 | Msa1060770:CDS | 65.0% | |
| CGGGTGCTTGGGGGATGACT+TGG | - | chr7_2:49465184-49465203 | Msa1060770:CDS | 65.0% | |
| TGGGTGTATTGGGGGGGGGG+GGG | - | chr7_2:49464984-49465003 | Msa1060770:CDS | 70.0% | |
| TAAGCAGGGGGTCTGGCGCC+AGG | + | chr7_2:49465137-49465156 | None:intergenic | 70.0% | |
| GGGTGTATTGGGGGGGGGGG+GGG | - | chr7_2:49464985-49465004 | Msa1060770:CDS | 75.0% | |
| GGCGCTAGGCGCCCAGTGCT+TGG | - | chr7_2:49465101-49465120 | Msa1060770:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 49460919 | 49465251 | 49460919 | ID=Msa1060770;Name=Msa1060770 |
| chr7_2 | mRNA | 49460919 | 49465251 | 49460919 | ID=Msa1060770-mRNA-1;Parent=Msa1060770;Name=Msa1060770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0|0.66|1|1|3|0|260 |
| chr7_2 | exon | 49464850 | 49465251 | 49464850 | ID=Msa1060770-mRNA-1:exon:8887;Parent=Msa1060770-mRNA-1 |
| chr7_2 | exon | 49464133 | 49464344 | 49464133 | ID=Msa1060770-mRNA-1:exon:8886;Parent=Msa1060770-mRNA-1 |
| chr7_2 | exon | 49460919 | 49461087 | 49460919 | ID=Msa1060770-mRNA-1:exon:8885;Parent=Msa1060770-mRNA-1 |
| chr7_2 | CDS | 49464850 | 49465251 | 49464850 | ID=Msa1060770-mRNA-1:cds;Parent=Msa1060770-mRNA-1 |
| chr7_2 | CDS | 49464133 | 49464344 | 49464133 | ID=Msa1060770-mRNA-1:cds;Parent=Msa1060770-mRNA-1 |
| chr7_2 | CDS | 49460919 | 49461087 | 49460919 | ID=Msa1060770-mRNA-1:cds;Parent=Msa1060770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
