AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061200 MtrunA17_Chr7g0238921 95.765 307 12 1 1 306 1 307 0.0 608
Msa1061200 MtrunA17_Chr5g0418781 42.767 159 71 5 124 272 124 272 9.58e-27 106
Msa1061200 MtrunA17_Chr7g0270191 39.873 158 67 6 124 267 145 288 4.61e-24 99.4
Msa1061200 MtrunA17_Chr4g0051881 71.930 57 16 0 124 180 178 234 3.18e-23 97.8
Msa1061200 MtrunA17_Chr2g0294231 52.941 85 29 1 124 197 203 287 1.38e-22 96.7
Msa1061200 MtrunA17_Chr1g0194481 66.667 57 19 0 124 180 158 214 4.50e-22 94.4
Msa1061200 MtrunA17_Chr1g0150801 64.912 57 20 0 124 180 102 158 9.39e-22 89.7
Msa1061200 MtrunA17_Chr5g0443131 66.667 57 19 0 124 180 157 213 2.35e-21 92.0
Msa1061200 MtrunA17_Chr8g0383351 64.912 57 20 0 124 180 160 216 2.99e-21 90.5
Msa1061200 MtrunA17_Chr3g0129321 59.322 59 24 0 122 180 116 174 7.93e-21 88.6
Msa1061200 MtrunA17_Chr3g0106491 64.912 57 20 0 124 180 365 421 8.39e-21 92.4
Msa1061200 MtrunA17_Chr3g0106491 59.649 57 22 1 124 180 198 253 1.04e-14 74.3
Msa1061200 MtrunA17_Chr7g0224801 61.404 57 22 0 124 180 93 149 1.12e-20 87.0
Msa1061200 MtrunA17_Chr5g0445311 63.158 57 21 0 124 180 364 420 1.18e-20 92.0
Msa1061200 MtrunA17_Chr5g0445311 57.895 57 23 1 124 180 200 255 1.98e-13 70.5
Msa1061200 MtrunA17_Chr3g0129361 64.912 57 20 0 124 180 144 200 1.32e-20 88.2
Msa1061200 MtrunA17_Chr5g0418191 62.712 59 22 0 122 180 318 376 1.50e-20 91.3
Msa1061200 MtrunA17_Chr5g0418191 59.322 59 23 1 123 181 150 207 7.03e-15 74.7
Msa1061200 MtrunA17_Chr3g0101131 63.158 57 21 0 124 180 415 471 1.76e-20 91.7
Msa1061200 MtrunA17_Chr3g0101131 45.882 85 38 2 103 180 215 298 1.14e-13 71.2
Msa1061200 MtrunA17_Chr4g0068541 44.118 102 56 1 81 182 166 266 5.73e-20 89.4
Msa1061200 MtrunA17_Chr5g0432161 63.158 57 21 0 124 180 421 477 1.01e-19 89.4
Msa1061200 MtrunA17_Chr5g0432161 63.158 57 20 1 124 180 244 299 4.63e-16 78.6
Msa1061200 MtrunA17_Chr7g0218081 61.017 59 23 0 122 180 408 466 1.25e-19 89.0
Msa1061200 MtrunA17_Chr7g0218081 56.667 60 21 2 123 180 227 283 2.81e-13 70.1
Msa1061200 MtrunA17_Chr3g0079691 63.158 57 21 0 124 180 495 551 1.54e-19 89.0
Msa1061200 MtrunA17_Chr3g0079691 51.429 70 33 1 115 184 271 339 2.28e-14 73.6
Msa1061200 MtrunA17_Chr4g0042831 59.322 59 24 0 122 180 276 334 4.09e-19 86.7
Msa1061200 MtrunA17_Chr4g0042831 54.386 57 26 0 124 180 145 201 1.45e-14 73.6
Msa1061200 MtrunA17_Chr8g0335811 49.438 89 41 1 96 180 122 210 4.13e-19 84.3
Msa1061200 MtrunA17_Chr8g0383251 55.932 59 26 0 122 180 106 164 4.77e-19 83.2
Msa1061200 MtrunA17_Chr5g0447701 58.333 60 25 0 121 180 249 308 9.21e-19 85.9
Msa1061200 MtrunA17_Chr4g0074001 48.684 76 38 1 106 180 340 415 1.77e-18 85.5
Msa1061200 MtrunA17_Chr1g0188941 57.895 57 24 0 124 180 51 107 2.16e-18 79.3
Msa1061200 MtrunA17_Chr7g0263531 60.714 56 22 0 125 180 362 417 3.41e-18 84.3
Msa1061200 MtrunA17_Chr7g0263531 58.929 56 22 1 125 180 190 244 1.06e-13 71.2
Msa1061200 MtrunA17_Chr1g0147881 50.667 75 33 2 110 180 245 319 3.45e-18 83.6
Msa1061200 MtrunA17_Chr7g0243891 59.649 57 23 0 124 180 374 430 4.37e-18 84.3
Msa1061200 MtrunA17_Chr7g0243891 59.649 57 22 1 124 180 216 271 9.68e-16 77.4
Msa1061200 MtrunA17_Chr3g0136961 33.918 171 92 6 41 208 72 224 5.62e-18 82.4
Msa1061200 MtrunA17_Chr1g0184691 49.367 79 36 2 110 184 276 354 6.10e-18 83.2
Msa1061200 MtrunA17_Chr7g0248721 61.404 57 21 1 124 180 141 196 8.27e-18 80.5
Msa1061200 MtrunA17_Chr4g0004911 59.649 57 23 0 124 180 336 392 1.41e-17 82.8
Msa1061200 MtrunA17_Chr4g0004911 59.649 57 23 0 124 180 184 240 3.36e-17 81.6
Msa1061200 MtrunA17_Chr7g0249301 57.895 57 24 0 124 180 292 348 2.13e-17 81.6
Msa1061200 MtrunA17_Chr7g0249301 53.571 56 25 1 125 180 63 117 1.26e-11 64.7
Msa1061200 MtrunA17_Chr1g0150281 41.525 118 63 3 125 237 141 257 2.28e-17 80.5
Msa1061200 MtrunA17_Chr7g0249311 57.895 57 24 0 124 180 392 448 2.34e-17 82.4
Msa1061200 MtrunA17_Chr7g0249311 54.839 62 27 1 119 180 174 234 2.06e-13 70.5
Msa1061200 MtrunA17_Chr7g0270051 57.576 66 27 1 116 180 45 110 3.08e-17 79.7
Msa1061200 MtrunA17_Chr4g0071521 36.220 127 69 4 64 180 178 302 3.19e-17 80.5
Msa1061200 MtrunA17_Chr7g0228941 43.750 80 39 3 107 180 30 109 3.78e-17 76.3
Msa1061200 MtrunA17_Chr8g0379461 35.032 157 92 5 96 250 47 195 4.27e-17 79.0
Msa1061200 MtrunA17_Chr8g0386241 50.877 57 28 0 124 180 103 159 5.67e-17 77.4
Msa1061200 MtrunA17_Chr3g0139021 43.373 83 43 2 106 184 293 375 7.65e-17 80.5
Msa1061200 MtrunA17_Chr8g0348311 48.718 78 37 2 106 182 139 214 1.46e-16 79.0
Msa1061200 MtrunA17_Chr5g0401821 45.570 79 39 2 106 180 178 256 2.22e-16 77.4
Msa1061200 MtrunA17_Chr4g0053281 45.570 79 39 2 106 180 245 323 2.45e-16 78.2
Msa1061200 MtrunA17_Chr2g0333851 52.632 57 26 1 125 180 170 226 4.63e-16 77.4
Msa1061200 MtrunA17_Chr2g0293481 42.268 97 49 2 91 180 228 324 5.75e-16 78.2
Msa1061200 MtrunA17_Chr1g0202461 53.968 63 28 1 119 180 256 318 8.96e-16 77.0
Msa1061200 MtrunA17_Chr1g0189391 56.897 58 24 1 124 180 97 154 9.02e-16 76.6
Msa1061200 MtrunA17_Chr6g0485431 55.172 58 25 1 124 180 154 211 9.04e-16 77.0
Msa1061200 MtrunA17_Chr8g0387981 32.000 150 90 5 36 178 45 189 1.14e-15 76.6
Msa1061200 MtrunA17_Chr2g0284321 54.098 61 27 1 125 184 36 96 2.09e-15 73.9
Msa1061200 MtrunA17_Chr2g0322391 42.857 91 48 3 95 184 323 410 2.36e-15 76.3
Msa1061200 MtrunA17_Chr4g0060271 58.621 58 23 1 124 180 255 312 2.76e-15 76.3
Msa1061200 MtrunA17_Chr7g0248691 40.741 108 59 3 122 224 152 259 2.90e-15 75.1
Msa1061200 MtrunA17_Chr7g0216891 48.611 72 35 2 110 180 206 276 3.55e-15 75.9
Msa1061200 MtrunA17_Chr3g0099641 54.098 61 27 1 125 184 252 312 3.85e-15 75.5
Msa1061200 MtrunA17_Chr8g0387501 53.226 62 28 1 120 180 125 186 6.44e-15 73.6
Msa1061200 MtrunA17_Chr4g0051181 47.222 72 36 2 110 180 230 300 7.28e-15 74.7
Msa1061200 MtrunA17_Chr7g0270831 45.556 90 33 2 92 180 199 273 8.55e-15 74.3
Msa1061200 MtrunA17_Chr2g0319961 57.895 57 23 1 125 180 81 137 9.59e-15 72.8
Msa1061200 MtrunA17_Chr4g0075201 38.318 107 50 2 82 187 240 331 1.02e-14 74.3
Msa1061200 MtrunA17_Chr3g0126391 57.377 61 23 1 121 178 130 190 1.19e-14 73.6
Msa1061200 MtrunA17_Chr2g0288871 38.938 113 52 3 70 180 265 362 1.23e-14 74.3
Msa1061200 MtrunA17_Chr4g0001361 52.632 57 26 1 125 180 163 219 2.78e-14 72.0
Msa1061200 MtrunA17_Chr1g0150271 50.877 57 27 1 125 180 102 158 7.85e-14 70.1
Msa1061200 MtrunA17_Chr2g0289181 53.333 60 27 1 122 180 12 71 7.99e-14 69.7
Msa1061200 MtrunA17_Chr2g0302391 52.632 57 26 1 125 180 212 268 5.31e-13 68.9
Msa1061200 MtrunA17_Chr7g0275531 49.275 69 28 2 117 178 107 175 1.19e-12 67.4
Msa1061200 MtrunA17_Chr8g0347251 44.737 76 35 2 110 178 118 193 2.95e-12 66.6
Msa1061200 MtrunA17_Chr5g0432071 50.000 58 28 1 124 181 104 160 4.25e-12 64.3
Msa1061200 MtrunA17_Chr4g0025051 50.877 57 27 1 125 180 336 392 1.75e-11 64.7
Msa1061200 MtrunA17_Chr8g0334541 53.448 58 24 1 124 178 103 160 1.92e-11 63.5
Msa1061200 MtrunA17_Chr8g0350621 51.724 58 25 1 124 178 111 168 2.30e-11 63.2
Msa1061200 MtrunA17_Chr2g0315381 49.231 65 30 1 122 183 142 206 4.25e-11 62.8
Msa1061200 MtrunA17_Chr7g0244981 51.724 58 25 1 124 178 122 179 6.37e-11 62.0
Msa1061200 MtrunA17_Chr3g0128671 52.632 57 24 1 125 178 128 184 6.96e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061200 AT5G43290.1 43.130 262 116 11 30 274 21 266 2.54e-54 178
Msa1061200 AT1G69310.4 42.484 153 73 4 124 273 147 287 5.00e-29 112
Msa1061200 AT1G69310.2 42.484 153 73 4 124 273 147 287 5.00e-29 112
Msa1061200 AT1G69310.1 42.484 153 73 4 124 273 147 287 5.00e-29 112
Msa1061200 AT5G49520.1 33.516 182 96 4 124 284 221 398 9.30e-24 100
Msa1061200 AT1G69310.3 39.869 153 73 5 124 273 147 283 1.72e-23 97.8
Msa1061200 AT4G39410.1 55.844 77 34 0 124 200 223 299 1.18e-22 95.9
Msa1061200 AT2G47260.1 66.102 59 20 0 124 182 174 232 1.47e-22 96.3
Msa1061200 AT1G29860.1 68.421 57 18 0 124 180 136 192 2.60e-22 94.7
Msa1061200 AT4G18170.1 68.421 57 18 0 124 180 172 228 5.70e-22 94.4
Msa1061200 AT1G64000.1 64.912 57 20 0 124 180 114 170 9.55e-22 90.9
Msa1061200 AT2G25000.1 33.702 181 101 7 13 180 29 203 1.20e-21 92.4
Msa1061200 AT5G46350.1 66.667 57 19 0 124 180 183 239 3.57e-21 92.4
Msa1061200 AT1G13960.2 62.712 59 22 0 122 180 254 312 4.57e-21 92.4
Msa1061200 AT1G13960.2 62.069 58 21 1 123 180 75 131 3.26e-15 75.9
Msa1061200 AT2G04880.2 63.077 65 24 0 124 188 283 347 5.03e-21 93.2
Msa1061200 AT2G04880.2 67.500 40 13 0 124 163 111 150 1.46e-11 65.1
Msa1061200 AT2G03340.1 62.712 59 22 0 122 180 413 471 5.06e-21 93.6
Msa1061200 AT2G03340.1 45.833 96 40 3 93 180 214 305 7.64e-15 75.1
Msa1061200 AT1G13960.1 62.712 59 22 0 122 180 407 465 6.67e-21 93.2
Msa1061200 AT1G13960.1 62.069 58 21 1 123 180 228 284 2.79e-15 76.6
Msa1061200 AT2G04880.1 63.077 65 24 0 124 188 307 371 7.69e-21 92.8
Msa1061200 AT2G04880.1 67.500 40 13 0 124 163 111 150 1.40e-11 65.5
Msa1061200 AT5G41570.1 63.158 57 21 0 124 180 98 154 1.04e-20 87.8
Msa1061200 AT5G13080.1 61.404 57 22 0 124 180 67 123 3.05e-20 85.5
Msa1061200 AT2G25000.3 34.132 167 92 6 27 180 21 182 3.09e-20 88.2
Msa1061200 AT5G07100.2 63.158 57 21 0 124 180 141 197 4.19e-20 87.0
Msa1061200 AT5G07100.2 37.963 108 50 1 120 227 20 110 6.47e-14 70.1
Msa1061200 AT5G07100.4 63.158 57 21 0 124 180 141 197 4.19e-20 87.0
Msa1061200 AT5G07100.4 37.963 108 50 1 120 227 20 110 6.47e-14 70.1
Msa1061200 AT5G07100.5 63.158 57 21 0 124 180 141 197 4.19e-20 87.0
Msa1061200 AT5G07100.5 37.963 108 50 1 120 227 20 110 6.47e-14 70.1
Msa1061200 AT5G07100.3 63.158 57 21 0 124 180 141 197 4.19e-20 87.0
Msa1061200 AT5G07100.3 37.963 108 50 1 120 227 20 110 6.47e-14 70.1
Msa1061200 AT3G62340.1 64.912 57 20 0 124 180 118 174 5.32e-20 88.2
Msa1061200 AT2G46130.1 63.158 57 21 0 124 180 30 86 7.67e-20 83.6
Msa1061200 AT2G25000.2 33.939 165 91 6 29 180 1 160 7.75e-20 86.7
Msa1061200 AT2G25000.4 33.939 165 91 6 29 180 1 160 7.75e-20 86.7
Msa1061200 AT3G01970.1 59.649 57 23 0 124 180 65 121 9.75e-20 84.3
Msa1061200 AT5G07100.1 63.158 57 21 0 124 180 234 290 1.16e-19 87.8
Msa1061200 AT5G07100.1 37.963 108 50 1 120 227 113 203 8.81e-14 70.9
Msa1061200 AT5G56270.1 63.158 57 21 0 124 180 487 543 1.42e-19 89.4
Msa1061200 AT5G56270.1 57.576 66 27 1 119 184 268 332 1.78e-16 80.1
Msa1061200 AT3G01080.1 61.017 59 23 0 122 180 304 362 3.26e-19 87.8
Msa1061200 AT3G01080.1 58.621 58 23 1 123 180 166 222 2.28e-13 70.5
Msa1061200 AT3G01080.2 61.017 59 23 0 122 180 342 400 3.40e-19 87.8
Msa1061200 AT3G01080.2 59.649 57 22 1 124 180 205 260 1.96e-13 70.9
Msa1061200 AT5G26170.1 57.895 57 24 0 124 180 113 169 4.11e-19 83.2
Msa1061200 AT2G44745.1 63.793 58 21 0 124 181 145 202 4.90e-19 84.3
Msa1061200 AT4G26640.5 61.404 57 22 0 124 180 205 261 6.03e-19 86.7
Msa1061200 AT4G26640.5 59.322 59 23 1 122 180 33 90 5.48e-14 72.0
Msa1061200 AT4G26640.6 61.404 57 22 0 124 180 205 261 6.03e-19 86.7
Msa1061200 AT4G26640.6 59.322 59 23 1 122 180 33 90 5.48e-14 72.0
Msa1061200 AT4G26640.4 61.404 57 22 0 124 180 205 261 6.03e-19 86.7
Msa1061200 AT4G26640.4 59.322 59 23 1 122 180 33 90 5.48e-14 72.0
Msa1061200 AT4G26640.3 61.404 57 22 0 124 180 205 261 6.03e-19 86.7
Msa1061200 AT4G26640.3 59.322 59 23 1 122 180 33 90 5.48e-14 72.0
Msa1061200 AT4G26640.7 61.404 57 22 0 124 180 341 397 6.32e-19 87.4
Msa1061200 AT4G26640.7 59.322 59 23 1 122 180 169 226 4.60e-14 72.8
Msa1061200 AT4G26640.1 61.404 57 22 0 124 180 309 365 6.86e-19 87.0
Msa1061200 AT4G26640.1 59.322 59 23 1 122 180 137 194 4.95e-14 72.8
Msa1061200 AT4G26640.2 61.404 57 22 0 124 180 381 437 6.90e-19 87.4
Msa1061200 AT4G26640.2 59.322 59 23 1 122 180 209 266 4.78e-14 72.8
Msa1061200 AT2G38470.1 61.404 57 22 0 124 180 362 418 4.33e-18 84.7
Msa1061200 AT2G38470.1 62.069 58 21 1 123 180 183 239 7.54e-16 78.2
Msa1061200 AT5G64810.1 54.386 57 26 0 124 180 110 166 6.90e-18 80.5
Msa1061200 AT4G31550.2 50.667 75 33 2 110 180 228 302 7.94e-18 82.8
Msa1061200 AT4G31550.1 50.667 75 33 2 110 180 229 303 8.03e-18 82.8
Msa1061200 AT4G30935.1 46.835 79 41 1 103 180 309 387 8.25e-18 84.0
Msa1061200 AT4G30935.1 53.571 56 25 1 125 180 169 223 2.28e-11 64.7
Msa1061200 AT1G55600.1 54.098 61 28 0 124 184 307 367 9.72e-18 83.6
Msa1061200 AT4G31800.2 54.237 59 26 1 125 182 112 170 9.96e-18 81.3
Msa1061200 AT2G21900.1 54.386 57 26 0 124 180 109 165 1.05e-17 80.1
Msa1061200 AT2G30250.1 62.500 56 21 0 125 180 329 384 1.37e-17 82.8
Msa1061200 AT2G30250.1 56.140 57 24 1 124 180 166 221 1.47e-12 68.2
Msa1061200 AT4G31800.1 54.237 59 26 1 125 182 177 235 1.63e-17 81.6
Msa1061200 AT2G23320.1 46.835 79 38 2 106 180 219 297 1.74e-17 81.6
Msa1061200 AT4G26440.1 40.196 102 48 2 124 225 372 460 1.88e-17 83.2
Msa1061200 AT4G26440.1 46.154 91 33 2 124 214 178 252 2.89e-16 79.7
Msa1061200 AT2G34830.1 34.254 181 90 7 21 180 100 272 2.59e-17 82.4
Msa1061200 AT2G34830.2 35.366 164 84 6 38 180 119 281 2.98e-17 82.0
Msa1061200 AT5G28650.1 49.367 79 36 2 106 180 241 319 3.63e-17 80.9
Msa1061200 AT2G37260.3 57.895 57 24 0 124 180 269 325 3.71e-17 81.3
Msa1061200 AT2G37260.3 58.929 56 22 1 125 180 86 140 3.10e-14 72.8
Msa1061200 AT2G37260.2 57.895 57 24 0 124 180 267 323 3.80e-17 81.3
Msa1061200 AT2G37260.2 58.929 56 22 1 125 180 84 138 3.31e-14 72.8
Msa1061200 AT2G37260.1 57.895 57 24 0 124 180 349 405 4.03e-17 81.6
Msa1061200 AT2G37260.1 58.929 56 22 1 125 180 166 220 2.98e-14 73.2
Msa1061200 AT5G52830.1 35.526 152 66 4 122 266 163 289 5.42e-17 80.9
Msa1061200 AT2G30590.1 42.708 96 49 3 93 184 281 374 6.30e-17 80.9
Msa1061200 AT3G04670.1 48.101 79 37 2 106 180 241 319 1.29e-16 79.3
Msa1061200 AT1G30650.1 44.643 112 52 4 78 180 164 274 2.79e-16 79.3
Msa1061200 AT2G24570.1 49.333 75 34 2 110 180 226 300 3.06e-16 78.2
Msa1061200 AT1G80840.1 54.386 57 25 1 125 180 147 203 7.29e-16 77.0
Msa1061200 AT4G01250.1 48.718 78 37 2 106 182 112 187 1.02e-15 76.6
Msa1061200 AT1G68150.1 44.578 83 44 2 99 180 211 292 1.06e-15 77.0
Msa1061200 AT1G29280.1 57.895 57 23 1 125 180 75 131 1.35e-15 75.5
Msa1061200 AT4G24240.1 41.758 91 47 3 94 180 250 338 2.06e-15 76.3
Msa1061200 AT1G62300.1 40.206 97 56 2 86 180 273 369 2.20e-15 77.0
Msa1061200 AT2G46400.1 48.148 81 34 2 106 178 81 161 4.35e-15 74.7
Msa1061200 AT5G15130.1 56.897 58 24 1 124 180 227 284 5.78e-15 75.5
Msa1061200 AT5G15130.2 56.897 58 24 1 124 180 185 242 5.95e-15 75.5
Msa1061200 AT3G58710.1 59.649 57 22 1 125 180 72 128 9.23e-15 73.6
Msa1061200 AT3G58710.2 59.649 57 22 1 125 180 71 127 9.76e-15 73.2
Msa1061200 AT2G46130.2 56.140 57 21 1 124 180 30 82 1.43e-14 68.9
Msa1061200 AT5G45050.2 46.429 84 42 2 100 180 1126 1209 1.80e-14 74.7
Msa1061200 AT4G23550.1 56.140 57 24 1 125 180 141 197 2.06e-14 72.8
Msa1061200 AT5G45050.1 46.429 84 42 2 100 180 1154 1237 2.07e-14 74.3
Msa1061200 AT5G45050.4 46.429 84 42 2 100 180 1015 1098 2.29e-14 74.3
Msa1061200 AT4G04450.2 53.125 64 29 1 125 187 199 262 3.02e-14 73.2
Msa1061200 AT2G40740.1 56.897 58 22 1 124 178 173 230 3.73e-14 72.0
Msa1061200 AT1G18860.1 45.783 83 42 3 99 180 216 296 4.34e-14 72.8
Msa1061200 AT2G40740.3 56.897 58 22 1 124 178 182 239 4.51e-14 71.6
Msa1061200 AT4G04450.1 53.125 64 29 1 125 187 293 356 4.75e-14 72.8
Msa1061200 AT4G22070.4 55.738 61 26 1 125 184 298 358 7.48e-14 72.4
Msa1061200 AT4G22070.3 55.738 61 26 1 125 184 298 358 7.48e-14 72.4
Msa1061200 AT4G22070.2 55.738 61 26 1 125 184 298 358 7.48e-14 72.4
Msa1061200 AT4G22070.1 55.738 61 26 1 125 184 298 358 7.48e-14 72.4
Msa1061200 AT3G01080.3 59.649 57 22 1 124 180 205 260 9.78e-14 71.2
Msa1061200 AT4G01720.1 55.172 58 25 1 124 180 239 296 5.98e-13 69.3
Msa1061200 AT5G24110.1 35.897 117 58 4 79 178 54 170 1.55e-12 67.4
Msa1061200 AT4G11070.2 52.459 61 26 1 121 178 106 166 3.36e-12 66.2
Msa1061200 AT4G11070.1 52.459 61 26 1 121 178 138 198 3.57e-12 66.2
Msa1061200 AT1G66560.1 49.153 59 27 1 124 179 103 161 4.26e-12 65.5
Msa1061200 AT5G01900.1 36.765 136 70 6 125 245 111 245 1.54e-11 63.9
Msa1061200 AT4G23810.1 50.820 61 27 1 121 178 155 215 2.22e-11 63.9
Msa1061200 AT2G40750.1 50.000 58 26 1 124 178 152 209 2.27e-11 64.3
Msa1061200 AT1G69810.1 49.153 59 28 2 124 180 203 261 2.38e-11 64.3
Msa1061200 AT1G69810.2 49.153 59 28 2 124 180 145 203 2.98e-11 63.9
Msa1061200 AT1G66550.2 44.444 63 32 1 124 183 103 165 5.57e-11 62.0
Msa1061200 AT1G66550.1 35.417 96 45 3 102 183 78 170 5.75e-11 62.4

Find 79 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACTTCACTTGCTTTA+TGG 0.123719 7_2:+50332395 None:intergenic
CCTCCAGCATCATGGAATTC+TGG 0.202106 7_2:-50332160 Msa1061200:CDS
TATAATTGAAATATGAATTT+AGG 0.224485 7_2:+50335098 None:intergenic
TTGTGTACGGTCCAATAAAA+TGG 0.226460 7_2:+50332312 None:intergenic
CTTCACTTGCTTTATGGTCT+TGG 0.238976 7_2:+50332401 None:intergenic
CATGGACTTCTTGTATATTC+TGG 0.247821 7_2:+50332371 None:intergenic
TTCATTTCAAATATTTATTC+AGG 0.250036 7_2:-50334862 Msa1061200:CDS
TTGATGAAAATTGTTGAAAT+TGG 0.253295 7_2:+50334788 None:intergenic
TCAAGAGTTTACCTAGGATT+TGG 0.255247 7_2:+50334460 None:intergenic
AACTCAATCTAGTACTTCTT+TGG 0.259986 7_2:-50332347 Msa1061200:CDS
AGAAAATAATGTCTTCTAAT+TGG 0.303170 7_2:-50335014 Msa1061200:CDS
ATTGTTGAAATTGGTTACTA+TGG 0.305605 7_2:+50334797 None:intergenic
GATTGTCCCACTATGAAATA+AGG 0.327297 7_2:+50332487 None:intergenic
TTCACTTGCTTTATGGTCTT+GGG 0.328292 7_2:+50332402 None:intergenic
CAAGAGTTTACCTAGGATTT+GGG 0.328816 7_2:+50334461 None:intergenic
GGATATAGGTGGAGGAAGTA+TGG 0.340368 7_2:-50334505 Msa1061200:CDS
TCACTATCAACATTGTTTGT+AGG 0.350268 7_2:+50332220 None:intergenic
AAGTACTAGATTGAGTTTCA+TGG 0.372687 7_2:+50332353 None:intergenic
AGAAGGGTTGCTTGAAGATA+TGG 0.390745 7_2:-50332263 Msa1061200:CDS
TGCTTATCCTTATTTCATAG+TGG 0.391267 7_2:-50332494 Msa1061200:CDS
AAATGAACCTATTAAAAGCT+TGG 0.401637 7_2:+50334878 None:intergenic
GCTTCTTAGCACCACACCTT+GGG 0.406138 7_2:+50332584 None:intergenic
CTCCATCATTGTCTTTGACA+TGG 0.406707 7_2:+50335035 None:intergenic
CACTATCAACATTGTTTGTA+GGG 0.407829 7_2:+50332221 None:intergenic
TAAGTGATTATGAGAGTGTC+AGG 0.409746 7_2:+50332538 None:intergenic
ACTTTGAAAATCAAATGCTT+TGG 0.412320 7_2:-50334547 Msa1061200:CDS
TGAAGAATCATGACATAAGT+TGG 0.414164 7_2:+50334906 None:intergenic
GATACGGTCCAAGAAAATTT+CGG 0.416624 7_2:-50332289 Msa1061200:CDS
CTTCCACCTCTTGATGCAGT+TGG 0.422734 7_2:-50332129 Msa1061200:exon
AGGAGAAAGGTGTGAGGAGA+AGG 0.422919 7_2:+50332180 None:intergenic
GGCAATGGGTTGGGTGATGA+TGG 0.433026 7_2:-50334526 Msa1061200:CDS
ACTCAATCTAGTACTTCTTT+GGG 0.439805 7_2:-50332346 Msa1061200:CDS
GAGAGTGTCAGGGTCTTCAT+TGG 0.440141 7_2:+50332549 None:intergenic
TGAAGATATGGTGCCATTCA+TGG 0.441742 7_2:-50332251 Msa1061200:CDS
AAATCAAATGCTTTGGCAAT+GGG 0.442693 7_2:-50334540 Msa1061200:CDS
GTAGCCTTGGACTTCTTCAT+TGG 0.443454 7_2:+50332442 None:intergenic
TCCTTGTGAAGAGGTAGCCT+TGG 0.445914 7_2:+50332429 None:intergenic
TGGACTTCTTCATTGGCGGA+TGG 0.446954 7_2:+50332449 None:intergenic
GGTTGGGTGATGATGGATAT+AGG 0.450448 7_2:-50334519 Msa1061200:CDS
TCAGAGTTTCTATATTAGAA+AGG 0.451303 7_2:-50334597 Msa1061200:intron
CAAGAAAATTTCGGCTCAGA+AGG 0.452520 7_2:-50332280 Msa1061200:CDS
AAAATCAAATGCTTTGGCAA+TGG 0.453326 7_2:-50334541 Msa1061200:CDS
GCCTTGGACTTCTTCATTGG+CGG 0.453999 7_2:+50332445 None:intergenic
AAATGCTTTGGCAATGGGTT+GGG 0.461090 7_2:-50334535 Msa1061200:CDS
GGACTTCTTCATTGGCGGAT+GGG 0.476972 7_2:+50332450 None:intergenic
GTAGGGTTTCTAACCATGAA+TGG 0.482456 7_2:+50332238 None:intergenic
TGTGTACGGTCCAATAAAAT+GGG 0.485883 7_2:+50332313 None:intergenic
AAACCAGAATTCCATGATGC+TGG 0.489002 7_2:+50332157 None:intergenic
CTTGCTTTATGGTCTTGGGT+TGG 0.490234 7_2:+50332406 None:intergenic
GCTTATCCTTATTTCATAGT+GGG 0.490566 7_2:-50332493 Msa1061200:CDS
ACCTTTCTCCTCCAGCATCA+TGG 0.499180 7_2:-50332168 Msa1061200:CDS
CTTGGACCGTATCTTGTGTA+CGG 0.501432 7_2:+50332299 None:intergenic
TCAAGAATAGCCCAAATCCT+AGG 0.505398 7_2:-50334471 Msa1061200:intron
GAACAAACAGGAGTTACTAT+AGG 0.522580 7_2:-50332615 Msa1061200:intron
ACTCTCATAATCACTTATGA+AGG 0.527480 7_2:-50332532 Msa1061200:CDS
CAAATGCTTTGGCAATGGGT+TGG 0.534026 7_2:-50334536 Msa1061200:CDS
ACTGCATCAAGAGGTGGAAG+TGG 0.534848 7_2:+50332132 None:intergenic
ATTGGACCGTACACAAGATA+CGG 0.536511 7_2:-50332305 Msa1061200:CDS
TGCTTCTTAGCACCACACCT+TGG 0.538042 7_2:+50332583 None:intergenic
ATCCATGTCAAAGACAATGA+TGG 0.541467 7_2:-50335037 Msa1061200:CDS
TTGGGTTGGTCCTTGTGAAG+AGG 0.546121 7_2:+50332420 None:intergenic
AAGGTGTGGTGCTAAGAAGC+AGG 0.570713 7_2:-50332581 Msa1061200:CDS
AAGGATAAGCAAAGTGCAAG+TGG 0.571322 7_2:+50332506 None:intergenic
AAGAAAATTTCGGCTCAGAA+GGG 0.589966 7_2:-50332279 Msa1061200:CDS
TCCATGATGCTGGAGGAGAA+AGG 0.595930 7_2:+50332167 None:intergenic
TCATGTGGCAACATAAGAAG+AGG 0.619719 7_2:+50334946 None:intergenic
TCCAAGGCTACCTCTTCACA+AGG 0.631287 7_2:-50332430 Msa1061200:CDS
AATGTCTTCTAATTGGTCAG+AGG 0.638714 7_2:-50335007 Msa1061200:CDS
AGGTGCACCAACCCAAGGTG+TGG 0.643144 7_2:-50332595 Msa1061200:CDS
ACTATAGGTGCACCAACCCA+AGG 0.643448 7_2:-50332600 Msa1061200:CDS
CCAGAATTCCATGATGCTGG+AGG 0.653108 7_2:+50332160 None:intergenic
TTTAAGCCAACTGCATCAAG+AGG 0.653215 7_2:+50332123 None:intergenic
AAGCCAACTGCATCAAGAGG+TGG 0.657138 7_2:+50332126 None:intergenic
GTGATGATGGATATAGGTGG+AGG 0.658043 7_2:-50334513 Msa1061200:CDS
TGCTGGAGGAGAAAGGTGTG+AGG 0.666732 7_2:+50332174 None:intergenic
TGGGTGATGATGGATATAGG+TGG 0.667370 7_2:-50334516 Msa1061200:CDS
ACTTCAGATACTCTCTCATG+TGG 0.678108 7_2:+50334931 None:intergenic
TCCGCCAATGAAGAAGTCCA+AGG 0.686483 7_2:-50332446 Msa1061200:CDS
AAGTGATTATGAGAGTGTCA+GGG 0.690845 7_2:+50332539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGAAATATGAATTT+AGG + chr7_2:50332130-50332149 None:intergenic 10.0%
!!! ATATTTTGATATGATAAAAT+AGG + chr7_2:50333206-50333225 None:intergenic 10.0%
!! TTCATTTCAAATATTTATTC+AGG - chr7_2:50332363-50332382 Msa1061200:CDS 15.0%
!!! AATACTTCAACTTTTTTTTT+TGG - chr7_2:50332469-50332488 Msa1061200:CDS 15.0%
!! AAGAAAATATATAAAAGTGA+AGG + chr7_2:50332818-50332837 None:intergenic 15.0%
!! TGAAAAAATTTACTATTTGT+GGG + chr7_2:50333468-50333487 None:intergenic 15.0%
!! TTGAAAAAATTTACTATTTG+TGG + chr7_2:50333469-50333488 None:intergenic 15.0%
!!! ATAGTAAATTTTTTCAATGT+TGG - chr7_2:50333472-50333491 Msa1061200:intron 15.0%
!! GATAATGAAATACTATTTAA+AGG + chr7_2:50333603-50333622 None:intergenic 15.0%
!!! TATAAAATTTGAAACTTTCA+AGG + chr7_2:50333772-50333791 None:intergenic 15.0%
!!! TTTTGCACTTTTATTTTTAA+GGG + chr7_2:50334374-50334393 None:intergenic 15.0%
!!! ATTTTGCACTTTTATTTTTA+AGG + chr7_2:50334375-50334394 None:intergenic 15.0%
!! AGAAAATAATGTCTTCTAAT+TGG - chr7_2:50332211-50332230 Msa1061200:CDS 20.0%
!! TTGATGAAAATTGTTGAAAT+TGG + chr7_2:50332440-50332459 None:intergenic 20.0%
!!! TACTTTTACATGTAATGTAA+TGG - chr7_2:50332790-50332809 Msa1061200:intron 20.0%
!!! ACTTTTACATGTAATGTAAT+GGG - chr7_2:50332791-50332810 Msa1061200:intron 20.0%
!!! TAAATAAGCTTTGTTTGAAA+AGG + chr7_2:50332942-50332961 None:intergenic 20.0%
!! CAACAAATTCAAATTCATTT+AGG + chr7_2:50333115-50333134 None:intergenic 20.0%
!! AACATAACATAAGGTTTATA+AGG + chr7_2:50333338-50333357 None:intergenic 20.0%
!!! CATTTTAAGATAACAAAATG+AGG + chr7_2:50333412-50333431 None:intergenic 20.0%
!!! AGAGAGTTTTAAATATTCTA+AGG - chr7_2:50333549-50333568 Msa1061200:intron 20.0%
!!! TTTATAGTTTGCATATCAAT+TGG - chr7_2:50333662-50333681 Msa1061200:intron 20.0%
!!! GATAAAAAGTTGAATGTTTT+AGG + chr7_2:50333745-50333764 None:intergenic 20.0%
!!! ATCACTACTCTTATTTTTAA+GGG + chr7_2:50334140-50334159 None:intergenic 20.0%
!!! TATCACTACTCTTATTTTTA+AGG + chr7_2:50334141-50334160 None:intergenic 20.0%
!!! TTTTTTTTCTCTCTTTTCAT+TGG - chr7_2:50334198-50334217 Msa1061200:intron 20.0%
!!! TTTTCATTGGTCAAAAATAA+TGG - chr7_2:50334211-50334230 Msa1061200:intron 20.0%
!! AATGAGTTATACATACAAAA+GGG - chr7_2:50334345-50334364 Msa1061200:intron 20.0%
!! AATGAGTTATACATACAAAA+GGG - chr7_2:50334345-50334364 Msa1061200:intron 20.0%
!!! TTTTTAAACCAATCATACTA+TGG + chr7_2:50334443-50334462 None:intergenic 20.0%
!! AATCTTCTCAAATTAGTTAA+GGG + chr7_2:50334540-50334559 None:intergenic 20.0%
!! TAATCTTCTCAAATTAGTTA+AGG + chr7_2:50334541-50334560 None:intergenic 20.0%
! AAATGAACCTATTAAAAGCT+TGG + chr7_2:50332350-50332369 None:intergenic 25.0%
! ATTGTTGAAATTGGTTACTA+TGG + chr7_2:50332431-50332450 None:intergenic 25.0%
!! TTCAACAATTTTCATCAACA+AGG - chr7_2:50332442-50332461 Msa1061200:CDS 25.0%
!!! TTTTTTTTGGTTAACTTGCA+TGG - chr7_2:50332482-50332501 Msa1061200:CDS 25.0%
!! ACTTGCATGGTAATTTTATT+AGG - chr7_2:50332495-50332514 Msa1061200:CDS 25.0%
! ATCAAATAAGTGGACAAAAT+TGG + chr7_2:50332580-50332599 None:intergenic 25.0%
! AATTACACACATCAAATAAG+TGG + chr7_2:50332590-50332609 None:intergenic 25.0%
! TCAGAGTTTCTATATTAGAA+AGG - chr7_2:50332628-50332647 Msa1061200:intron 25.0%
!! ACTTTGAAAATCAAATGCTT+TGG - chr7_2:50332678-50332697 Msa1061200:intron 25.0%
!! CTTTTACATGTAATGTAATG+GGG - chr7_2:50332792-50332811 Msa1061200:intron 25.0%
! TACTATATATATGCCTTAAC+AGG + chr7_2:50332891-50332910 None:intergenic 25.0%
! TAAGGCATATATATAGTACT+TGG - chr7_2:50332893-50332912 Msa1061200:intron 25.0%
!! CTAGACACTATCAATTTTAT+AGG + chr7_2:50333024-50333043 None:intergenic 25.0%
!!! GAATTTGTTGTAGTAGTAAA+AGG - chr7_2:50333125-50333144 Msa1061200:intron 25.0%
!! CATCAATAATGCATCATTTT+TGG + chr7_2:50333151-50333170 None:intergenic 25.0%
! GATGAAAAACAAACATTTAG+AGG - chr7_2:50333167-50333186 Msa1061200:intron 25.0%
! TCAAAATATAAGTCACTAGA+TGG - chr7_2:50333217-50333236 Msa1061200:intron 25.0%
! ATGAGCAATTGTAATTATCT+TGG + chr7_2:50333306-50333325 None:intergenic 25.0%
! CAAACAAGTAACATAACATA+AGG + chr7_2:50333347-50333366 None:intergenic 25.0%
! TATCTTAAAATGTAAGTCGT+TGG - chr7_2:50333420-50333439 Msa1061200:intron 25.0%
! GTATTTAGGAAAGATTTGAA+AGG + chr7_2:50333498-50333517 None:intergenic 25.0%
! TTACTCATTAATCCTATAGT+CGG + chr7_2:50333632-50333651 None:intergenic 25.0%
!! TATGCAAACTATAAAAGTGT+GGG + chr7_2:50333657-50333676 None:intergenic 25.0%
! ATATGCAAACTATAAAAGTG+TGG + chr7_2:50333658-50333677 None:intergenic 25.0%
!! AATTTGAAACTTTCAAGGTT+TGG + chr7_2:50333767-50333786 None:intergenic 25.0%
!! TCTAAAAAATGCTGCTTAAA+AGG - chr7_2:50333819-50333838 Msa1061200:intron 25.0%
! AGTATTATAGTCATTCAGTT+AGG + chr7_2:50333879-50333898 None:intergenic 25.0%
!! CACATTAGAATTGTCAATTT+TGG + chr7_2:50334079-50334098 None:intergenic 25.0%
! ACAATTCTAATGTGTACTTA+AGG - chr7_2:50334085-50334104 Msa1061200:intron 25.0%
! CAATGAGTTATACATACAAA+AGG - chr7_2:50334344-50334363 Msa1061200:intron 25.0%
! CAATGAGTTATACATACAAA+AGG - chr7_2:50334344-50334363 Msa1061200:intron 25.0%
! TTTATCAACCATAGTATGAT+TGG - chr7_2:50334432-50334451 Msa1061200:intron 25.0%
!!! ATTACAAATTTTTTATGCCG+TGG - chr7_2:50334588-50334607 Msa1061200:CDS 25.0%
TGAAGAATCATGACATAAGT+TGG + chr7_2:50332322-50332341 None:intergenic 30.0%
! CAAAAGACCAAGCTTTTAAT+AGG - chr7_2:50332340-50332359 Msa1061200:CDS 30.0%
!! TTTTCAATATCTGAGATGGT+AGG + chr7_2:50332390-50332409 None:intergenic 30.0%
! AGCATTTTCAATATCTGAGA+TGG + chr7_2:50332394-50332413 None:intergenic 30.0%
! TGTCATATGCTTGTTAGATT+TGG - chr7_2:50332543-50332562 Msa1061200:CDS 30.0%
AAAATCAAATGCTTTGGCAA+TGG - chr7_2:50332684-50332703 Msa1061200:intron 30.0%
AAATCAAATGCTTTGGCAAT+GGG - chr7_2:50332685-50332704 Msa1061200:intron 30.0%
TATATATGCCTTAACAGGAT+TGG + chr7_2:50332886-50332905 None:intergenic 30.0%
ACTTAAATTGCATGACTAGT+AGG - chr7_2:50333250-50333269 Msa1061200:intron 30.0%
GCAATTGTAATTATCTTGGA+GGG + chr7_2:50333302-50333321 None:intergenic 30.0%
AGCAATTGTAATTATCTTGG+AGG + chr7_2:50333303-50333322 None:intergenic 30.0%
ATTATCTTCAAACCGACTAT+AGG - chr7_2:50333617-50333636 Msa1061200:intron 30.0%
! ATGCAAACTATAAAAGTGTG+GGG + chr7_2:50333656-50333675 None:intergenic 30.0%
ATATGCAACTGTACTATAGT+CGG + chr7_2:50333710-50333729 None:intergenic 30.0%
AAGAGCAGAATTCACTTAAA+AGG - chr7_2:50334019-50334038 Msa1061200:intron 30.0%
ACTCTCATAATCACTTATGA+AGG - chr7_2:50334693-50334712 Msa1061200:intron 30.0%
! TGCTTATCCTTATTTCATAG+TGG - chr7_2:50334731-50334750 Msa1061200:intron 30.0%
! GCTTATCCTTATTTCATAGT+GGG - chr7_2:50334732-50334751 Msa1061200:intron 30.0%
AAGTACTAGATTGAGTTTCA+TGG + chr7_2:50334875-50334894 None:intergenic 30.0%
AACTCAATCTAGTACTTCTT+TGG - chr7_2:50334878-50334897 Msa1061200:CDS 30.0%
ACTCAATCTAGTACTTCTTT+GGG - chr7_2:50334879-50334898 Msa1061200:CDS 30.0%
! ACTCATTTCACCCATTTTAT+TGG - chr7_2:50334902-50334921 Msa1061200:CDS 30.0%
CACTATCAACATTGTTTGTA+GGG + chr7_2:50335007-50335026 None:intergenic 30.0%
TCACTATCAACATTGTTTGT+AGG + chr7_2:50335008-50335027 None:intergenic 30.0%
ATCCATGTCAAAGACAATGA+TGG - chr7_2:50332188-50332207 Msa1061200:CDS 35.0%
AATGTCTTCTAATTGGTCAG+AGG - chr7_2:50332218-50332237 Msa1061200:CDS 35.0%
TTAGGCTTAGTTGCATGAAT+TGG - chr7_2:50332513-50332532 Msa1061200:CDS 35.0%
CTAACAAGCATATGACAAGT+TGG + chr7_2:50332540-50332559 None:intergenic 35.0%
CAAGAGTTTACCTAGGATTT+GGG + chr7_2:50332767-50332786 None:intergenic 35.0%
TCAAGAGTTTACCTAGGATT+TGG + chr7_2:50332768-50332787 None:intergenic 35.0%
AGTAAGTCAAGAGTTTACCT+AGG + chr7_2:50332774-50332793 None:intergenic 35.0%
TCCTTAAACCAATCCTGTTA+AGG - chr7_2:50332875-50332894 Msa1061200:intron 35.0%
! ATTGCATGACTAGTAGGTTT+TGG - chr7_2:50333256-50333275 Msa1061200:intron 35.0%
CAATACACGTGCAAGTATTT+AGG + chr7_2:50333512-50333531 None:intergenic 35.0%
!! AGGATTAGTTGAGTTGATCA+TGG + chr7_2:50333583-50333602 None:intergenic 35.0%
!! ACTGTACTATAGTCGGTTTT+AGG + chr7_2:50333703-50333722 None:intergenic 35.0%
!!! AAGCAGCATTTTTTAGAAGC+TGG + chr7_2:50333816-50333835 None:intergenic 35.0%
!!! AGGAATGAGCATTTTTGGTT+GGG + chr7_2:50333859-50333878 None:intergenic 35.0%
!!! TAGGAATGAGCATTTTTGGT+TGG + chr7_2:50333860-50333879 None:intergenic 35.0%
! CAGTTAGGAATGAGCATTTT+TGG + chr7_2:50333864-50333883 None:intergenic 35.0%
!! GTATTTTGGGAAGTTTGGTT+GGG - chr7_2:50333974-50333993 Msa1061200:intron 35.0%
CAAAACCTACTACTAGCATT+GGG + chr7_2:50334112-50334131 None:intergenic 35.0%
ACAAAACCTACTACTAGCAT+TGG + chr7_2:50334113-50334132 None:intergenic 35.0%
GAGAGAAAGTTGTCATAAAG+TGG - chr7_2:50334277-50334296 Msa1061200:intron 35.0%
GAACAAACAGGAGTTACTAT+AGG - chr7_2:50334610-50334629 Msa1061200:intron 35.0%
!! AAGTGATTATGAGAGTGTCA+GGG + chr7_2:50334689-50334708 None:intergenic 35.0%
!! TAAGTGATTATGAGAGTGTC+AGG + chr7_2:50334690-50334709 None:intergenic 35.0%
GATTGTCCCACTATGAAATA+AGG + chr7_2:50334741-50334760 None:intergenic 35.0%
TTCACTTGCTTTATGGTCTT+GGG + chr7_2:50334826-50334845 None:intergenic 35.0%
CATGAACTTCACTTGCTTTA+TGG + chr7_2:50334833-50334852 None:intergenic 35.0%
CATGGACTTCTTGTATATTC+TGG + chr7_2:50334857-50334876 None:intergenic 35.0%
TGTGTACGGTCCAATAAAAT+GGG + chr7_2:50334915-50334934 None:intergenic 35.0%
TTGTGTACGGTCCAATAAAA+TGG + chr7_2:50334916-50334935 None:intergenic 35.0%
GATACGGTCCAAGAAAATTT+CGG - chr7_2:50334936-50334955 Msa1061200:CDS 35.0%
AAGAAAATTTCGGCTCAGAA+GGG - chr7_2:50334946-50334965 Msa1061200:CDS 35.0%
CTCCATCATTGTCTTTGACA+TGG + chr7_2:50332193-50332212 None:intergenic 40.0%
TCATGTGGCAACATAAGAAG+AGG + chr7_2:50332282-50332301 None:intergenic 40.0%
ACTTCAGATACTCTCTCATG+TGG + chr7_2:50332297-50332316 None:intergenic 40.0%
! AAATGCTTTGGCAATGGGTT+GGG - chr7_2:50332690-50332709 Msa1061200:intron 40.0%
TCAAGAATAGCCCAAATCCT+AGG - chr7_2:50332754-50332773 Msa1061200:intron 40.0%
!! GCCTTAACAGGATTGGTTTA+AGG + chr7_2:50332879-50332898 None:intergenic 40.0%
GTAAGTCGTTGGATTGAGAT+CGG - chr7_2:50333431-50333450 Msa1061200:intron 40.0%
!!! AGTCGGTTTTAGGTAATCGA+AGG + chr7_2:50333693-50333712 None:intergenic 40.0%
AATCTTGCGTGAGTTAACTC+AGG - chr7_2:50333927-50333946 Msa1061200:intron 40.0%
!! GGTATTTTGGGAAGTTTGGT+TGG - chr7_2:50333973-50333992 Msa1061200:intron 40.0%
! TTTTATGCCGTGGAACAAAC+AGG - chr7_2:50334598-50334617 Msa1061200:intron 40.0%
AGTAACTCCTGTTTGTTCCA+CGG + chr7_2:50334608-50334627 None:intergenic 40.0%
AAGGATAAGCAAAGTGCAAG+TGG + chr7_2:50334722-50334741 None:intergenic 40.0%
CTTCACTTGCTTTATGGTCT+TGG + chr7_2:50334827-50334846 None:intergenic 40.0%
ATTGGACCGTACACAAGATA+CGG - chr7_2:50334920-50334939 Msa1061200:CDS 40.0%
! CTTCTGAGCCGAAATTTTCT+TGG + chr7_2:50334947-50334966 None:intergenic 40.0%
CAAGAAAATTTCGGCTCAGA+AGG - chr7_2:50334945-50334964 Msa1061200:CDS 40.0%
AGAAGGGTTGCTTGAAGATA+TGG - chr7_2:50334962-50334981 Msa1061200:CDS 40.0%
!! TGAAGATATGGTGCCATTCA+TGG - chr7_2:50334974-50334993 Msa1061200:CDS 40.0%
GTAGGGTTTCTAACCATGAA+TGG + chr7_2:50334990-50335009 None:intergenic 40.0%
AAACCAGAATTCCATGATGC+TGG + chr7_2:50335071-50335090 None:intergenic 40.0%
TTTAAGCCAACTGCATCAAG+AGG + chr7_2:50335105-50335124 None:intergenic 40.0%
CAAATGCTTTGGCAATGGGT+TGG - chr7_2:50332689-50332708 Msa1061200:intron 45.0%
!! GGTTGGGTGATGATGGATAT+AGG - chr7_2:50332706-50332725 Msa1061200:intron 45.0%
!! TGGGTGATGATGGATATAGG+TGG - chr7_2:50332709-50332728 Msa1061200:intron 45.0%
!! GTGATGATGGATATAGGTGG+AGG - chr7_2:50332712-50332731 Msa1061200:intron 45.0%
GGATATAGGTGGAGGAAGTA+TGG - chr7_2:50332720-50332739 Msa1061200:intron 45.0%
!!! TAAGTGACGCAGGGGTATTT+TGG - chr7_2:50333960-50333979 Msa1061200:intron 45.0%
!!! AAGTGACGCAGGGGTATTTT+GGG - chr7_2:50333961-50333980 Msa1061200:intron 45.0%
!!! CAGGGGTATTTTGGGAAGTT+TGG - chr7_2:50333969-50333988 Msa1061200:intron 45.0%
!!! TGGGAGCGAGCATTTTTAGT+TGG - chr7_2:50333993-50334012 Msa1061200:intron 45.0%
!!! GGGAGCGAGCATTTTTAGTT+GGG - chr7_2:50333994-50334013 Msa1061200:intron 45.0%
ACCTTGCCTAGTGAATCCTT+TGG - chr7_2:50334047-50334066 Msa1061200:intron 45.0%
CCTTGCCTAGTGAATCCTTT+GGG - chr7_2:50334048-50334067 Msa1061200:intron 45.0%
! CCTAGTGAATCCTTTGGGTT+GGG - chr7_2:50334053-50334072 Msa1061200:intron 45.0%
!! TCAATTTTGGCCCAACCCAA+AGG + chr7_2:50334066-50334085 None:intergenic 45.0%
AAGGACCCAATGCTAGTAGT+AGG - chr7_2:50334104-50334123 Msa1061200:intron 45.0%
! GTAGCCTTGGACTTCTTCAT+TGG + chr7_2:50334786-50334805 None:intergenic 45.0%
! CTTGCTTTATGGTCTTGGGT+TGG + chr7_2:50334822-50334841 None:intergenic 45.0%
CTTGGACCGTATCTTGTGTA+CGG + chr7_2:50334929-50334948 None:intergenic 45.0%
TTGCGTGACTTAAGTGACGC+AGG - chr7_2:50333950-50333969 Msa1061200:intron 50.0%
TGCGTGACTTAAGTGACGCA+GGG - chr7_2:50333951-50333970 Msa1061200:intron 50.0%
GGATTCACTAGGCAAGGTGA+GGG + chr7_2:50334045-50334064 None:intergenic 50.0%
AGGATTCACTAGGCAAGGTG+AGG + chr7_2:50334046-50334065 None:intergenic 50.0%
CCCAAAGGATTCACTAGGCA+AGG + chr7_2:50334051-50334070 None:intergenic 50.0%
GCCTAGTGAATCCTTTGGGT+TGG - chr7_2:50334052-50334071 Msa1061200:intron 50.0%
CCCAACCCAAAGGATTCACT+AGG + chr7_2:50334056-50334075 None:intergenic 50.0%
ACTATAGGTGCACCAACCCA+AGG - chr7_2:50334625-50334644 Msa1061200:intron 50.0%
GCTTCTTAGCACCACACCTT+GGG + chr7_2:50334644-50334663 None:intergenic 50.0%
TGCTTCTTAGCACCACACCT+TGG + chr7_2:50334645-50334664 None:intergenic 50.0%
! AAGGTGTGGTGCTAAGAAGC+AGG - chr7_2:50334644-50334663 Msa1061200:intron 50.0%
!! GAGAGTGTCAGGGTCTTCAT+TGG + chr7_2:50334679-50334698 None:intergenic 50.0%
! GGACTTCTTCATTGGCGGAT+GGG + chr7_2:50334778-50334797 None:intergenic 50.0%
TGGACTTCTTCATTGGCGGA+TGG + chr7_2:50334779-50334798 None:intergenic 50.0%
TCCGCCAATGAAGAAGTCCA+AGG - chr7_2:50334779-50334798 Msa1061200:intron 50.0%
GCCTTGGACTTCTTCATTGG+CGG + chr7_2:50334783-50334802 None:intergenic 50.0%
TCCAAGGCTACCTCTTCACA+AGG - chr7_2:50334795-50334814 Msa1061200:CDS 50.0%
TCCTTGTGAAGAGGTAGCCT+TGG + chr7_2:50334799-50334818 None:intergenic 50.0%
!! TTGGGTTGGTCCTTGTGAAG+AGG + chr7_2:50334808-50334827 None:intergenic 50.0%
! AGGAGAAAGGTGTGAGGAGA+AGG + chr7_2:50335048-50335067 None:intergenic 50.0%
ACCTTTCTCCTCCAGCATCA+TGG - chr7_2:50335057-50335076 Msa1061200:exon 50.0%
TCCATGATGCTGGAGGAGAA+AGG + chr7_2:50335061-50335080 None:intergenic 50.0%
CCAGAATTCCATGATGCTGG+AGG + chr7_2:50335068-50335087 None:intergenic 50.0%
CCTCCAGCATCATGGAATTC+TGG - chr7_2:50335065-50335084 Msa1061200:exon 50.0%
ACTGCATCAAGAGGTGGAAG+TGG + chr7_2:50335096-50335115 None:intergenic 50.0%
CTTCCACCTCTTGATGCAGT+TGG - chr7_2:50335096-50335115 Msa1061200:five_prime_UTR 50.0%
AAGCCAACTGCATCAAGAGG+TGG + chr7_2:50335102-50335121 None:intergenic 50.0%
!! GGCAATGGGTTGGGTGATGA+TGG - chr7_2:50332699-50332718 Msa1061200:intron 55.0%
GCGTGACTTAAGTGACGCAG+GGG - chr7_2:50333952-50333971 Msa1061200:intron 55.0%
CTTAGCACCACACCTTGGGT+TGG + chr7_2:50334640-50334659 None:intergenic 55.0%
! TGCTGGAGGAGAAAGGTGTG+AGG + chr7_2:50335054-50335073 None:intergenic 55.0%
AGGTGCACCAACCCAAGGTG+TGG - chr7_2:50334630-50334649 Msa1061200:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 50332117 50335130 50332117 ID=Msa1061200;Name=Msa1061200
chr7_2 mRNA 50332117 50335130 50332117 ID=Msa1061200-mRNA-1;Parent=Msa1061200;Name=Msa1061200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=60|1|1|1|1|1|3|21|306
chr7_2 exon 50332117 50332627 50332117 ID=Msa1061200-mRNA-1:exon:9109;Parent=Msa1061200-mRNA-1
chr7_2 exon 50334472 50334615 50334472 ID=Msa1061200-mRNA-1:exon:9108;Parent=Msa1061200-mRNA-1
chr7_2 exon 50334784 50335130 50334784 ID=Msa1061200-mRNA-1:exon:9107;Parent=Msa1061200-mRNA-1
chr7_2 five_prime_UTR 50335071 50335130 50335071 ID=Msa1061200-mRNA-1:five_prime_utr;Parent=Msa1061200-mRNA-1
chr7_2 CDS 50334784 50335070 50334784 ID=Msa1061200-mRNA-1:cds;Parent=Msa1061200-mRNA-1
chr7_2 CDS 50334472 50334615 50334472 ID=Msa1061200-mRNA-1:cds;Parent=Msa1061200-mRNA-1
chr7_2 CDS 50332138 50332627 50332138 ID=Msa1061200-mRNA-1:cds;Parent=Msa1061200-mRNA-1
chr7_2 three_prime_UTR 50332117 50332137 50332117 ID=Msa1061200-mRNA-1:three_prime_utr;Parent=Msa1061200-mRNA-1
Gene Sequence

>Msa1061200

ATGATTGACTCATCCATGTCAAAGACAATGATGGAGAAAATAATGTCTTCTAATTGGTCAGAGGATGATGAACTTTTAAGAGAGCTTTTAGTTGATGAGTCTCCTCTTCTTATGTTGCCACATGAGAGAGTATCTGAAGTAACCAACTTATGTCATGATTCTTCAAAAGACCAAGCTTTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATCTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCAATTTCAACAATTTTCATCAACAAGAGTTTCTATATTAGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAATCAAATGCTTTGGCAATGGGTTGGGTGATGATGGATATAGGTGGAGGAAGTATGGTCAGAAATCAATCAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAGGTGTGGTGCTAAGAAGCAGGTTGAGAGATCCAATGAAGACCCTGACACTCTCATAATCACTTATGAAGGACTCCACTTGCACTTTGCTTATCCTTATTTCATAGTGGGACAATCACATCAATCTCATTCCCATCCGCCAATGAAGAAGTCCAAGGCTACCTCTTCACAAGGACCAACCCAAGACCATAAAGCAAGTGAAGTTCATGACCAGAATATACAAGAAGTCCATGAAACTCAATCTAGTACTTCTTTGGGACTCATTTCACCCATTTTATTGGACCGTACACAAGATACGGTCCAAGAAAATTTCGGCTCAGAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTAGAAACCCTACAAACAATGTTGATAGTGATGATTACTCAAAATTTTCCTTCTCCTCACACCTTTCTCCTCCAGCATCATGGAATTCTGGTTTTTCCACTTCCACCTCTTGA
Protein sequence

>Msa1061200

MIDSSMSKTMMEKIMSSNWSEDDELLRELLVDESPLLMLPHERVSEVTNLCHDSSKDQAFNRFISNIYSGPTISDIENALLVTNHSNQFQQFSSTRVSILERSLSKIENKYTLKIKCFGNGLGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHFAYPYFIVGQSHQSHSHPPMKKSKATSSQGPTQDHKASEVHDQNIQEVHETQSSTSLGLISPILLDRTQDTVQENFGSEGLLEDMVPFMVRNPTNNVDSDDYSKFSFSSHLSPPASWNSGFSTSTS*