Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063130 | XP_003623293.1 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 9.05e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063130 | sp|O49595|HMGB1_ARATH | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.13e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063130 | G7KS90 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 4.32e-109 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1063130 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063130 | MtrunA17_Chr7g0242251 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 8.32e-113 | 317 |
| Msa1063130 | MtrunA17_Chr3g0143991 | 79.221 | 77 | 16 | 0 | 46 | 122 | 40 | 116 | 3.00e-36 | 123 |
| Msa1063130 | MtrunA17_Chr8g0370431 | 56.349 | 126 | 47 | 3 | 16 | 141 | 9 | 126 | 5.13e-35 | 119 |
| Msa1063130 | MtrunA17_Chr5g0407011 | 54.286 | 140 | 48 | 5 | 16 | 154 | 9 | 133 | 3.67e-32 | 112 |
| Msa1063130 | MtrunA17_Chr1g0212341 | 50.000 | 114 | 53 | 2 | 47 | 157 | 98 | 210 | 4.34e-27 | 101 |
| Msa1063130 | MtrunA17_Chr4g0052011 | 48.315 | 89 | 46 | 0 | 38 | 126 | 51 | 139 | 6.67e-22 | 86.3 |
| Msa1063130 | MtrunA17_Chr1g0155251 | 43.820 | 89 | 48 | 2 | 47 | 134 | 554 | 641 | 2.46e-12 | 63.9 |
| Msa1063130 | MtrunA17_Chr8g0387931 | 43.421 | 76 | 40 | 1 | 47 | 122 | 262 | 334 | 2.48e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063130 | AT3G51880.2 | 67.081 | 161 | 50 | 1 | 3 | 163 | 5 | 162 | 1.28e-63 | 194 |
| Msa1063130 | AT3G51880.5 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1063130 | AT3G51880.1 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1063130 | AT3G51880.3 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1063130 | AT3G51880.4 | 69.784 | 139 | 39 | 1 | 3 | 141 | 5 | 140 | 7.54e-59 | 181 |
| Msa1063130 | AT1G20693.2 | 63.866 | 119 | 37 | 1 | 42 | 160 | 29 | 141 | 2.65e-41 | 135 |
| Msa1063130 | AT1G20696.1 | 62.903 | 124 | 42 | 1 | 22 | 141 | 2 | 125 | 6.61e-40 | 132 |
| Msa1063130 | AT1G20693.3 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 2.81e-38 | 128 |
| Msa1063130 | AT1G20693.1 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 2.90e-38 | 128 |
| Msa1063130 | AT2G17560.2 | 60.000 | 115 | 42 | 2 | 42 | 155 | 26 | 137 | 9.69e-37 | 124 |
| Msa1063130 | AT2G17560.1 | 60.000 | 115 | 42 | 2 | 42 | 155 | 26 | 137 | 9.69e-37 | 124 |
| Msa1063130 | AT2G17560.3 | 62.162 | 111 | 38 | 2 | 42 | 151 | 26 | 133 | 1.08e-36 | 124 |
| Msa1063130 | AT1G20696.2 | 64.486 | 107 | 34 | 1 | 24 | 126 | 4 | 110 | 3.62e-35 | 120 |
| Msa1063130 | AT1G20696.5 | 66.667 | 102 | 30 | 1 | 25 | 122 | 5 | 106 | 4.28e-35 | 120 |
| Msa1063130 | AT1G20696.3 | 63.636 | 88 | 32 | 0 | 59 | 146 | 1 | 88 | 3.72e-29 | 103 |
| Msa1063130 | AT1G20696.4 | 63.855 | 83 | 30 | 0 | 59 | 141 | 1 | 83 | 6.09e-27 | 98.2 |
| Msa1063130 | AT4G35570.1 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 6.00e-26 | 96.3 |
| Msa1063130 | AT4G35570.2 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 6.00e-26 | 96.3 |
| Msa1063130 | AT2G34450.4 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1063130 | AT2G34450.3 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1063130 | AT2G34450.1 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1063130 | AT5G23420.1 | 54.651 | 86 | 38 | 1 | 31 | 116 | 95 | 179 | 3.26e-21 | 87.0 |
| Msa1063130 | AT2G34450.2 | 44.444 | 90 | 49 | 1 | 51 | 139 | 63 | 152 | 2.68e-20 | 82.8 |
Find 64 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTCCTTCTTAGTCTT+TGG | 0.199866 | 7_2:-54680967 | None:intergenic |
| TGGTTTGTTGGGATCTTTCT+TGG | 0.220642 | 7_2:-54680992 | None:intergenic |
| GCTGATACGGCCTTCACATT+AGG | 0.277113 | 7_2:-54681160 | None:intergenic |
| TTTGCAGCCTTGGCTTCATA+TGG | 0.316878 | 7_2:-54681593 | None:intergenic |
| CAAACTATTCAAACTAAGTT+TGG | 0.320849 | 7_2:-54682526 | None:intergenic |
| TTAGTCTTTGGCACCTTCTC+AGG | 0.326317 | 7_2:-54680955 | None:intergenic |
| CTGATACGGCCTTCACATTA+GGG | 0.334691 | 7_2:-54681159 | None:intergenic |
| CTTGAACTTCCCTCAGTTGT+TGG | 0.336610 | 7_2:+54682375 | Msa1063130:three_prime_UTR |
| CTTGAAATATAATGTTTCAT+TGG | 0.346567 | 7_2:+54682251 | Msa1063130:three_prime_UTR |
| TTCTCTTCTTGCTGTGTCTT+CGG | 0.353067 | 7_2:+54679023 | Msa1063130:five_prime_UTR |
| GAATATTTATCTCTTATTGC+TGG | 0.368858 | 7_2:+54682332 | Msa1063130:three_prime_UTR |
| ATGAAGCCAAGGCTGCAAAA+AGG | 0.405842 | 7_2:+54681597 | Msa1063130:CDS |
| TGATTGTAGGTTGGAAAGGC+TGG | 0.424093 | 7_2:+54681265 | Msa1063130:intron |
| CGTCCTCTTCCTCATCATCT+TGG | 0.438258 | 7_2:-54682172 | None:intergenic |
| TCTGTTGTTTACAGAAAAGT+AGG | 0.440920 | 7_2:+54680910 | Msa1063130:intron |
| TCGTCATCGTCCGCTGAACT+TGG | 0.455762 | 7_2:-54681748 | None:intergenic |
| GAAAGGCTGGAGGAGAGAAA+TGG | 0.460200 | 7_2:+54681278 | Msa1063130:CDS |
| TACTTTAGCCAACACATTTG+AGG | 0.465359 | 7_2:-54682431 | None:intergenic |
| GAAACTAACCGGTCATCAAC+TGG | 0.469423 | 7_2:-54679855 | None:intergenic |
| AGGGAACAGCAAAGACTTCA+AGG | 0.490288 | 7_2:+54679820 | Msa1063130:CDS |
| GAAATATAATGTTTCATTGG+TGG | 0.492483 | 7_2:+54682254 | Msa1063130:three_prime_UTR |
| ATATAATGTTTCATTGGTGG+AGG | 0.501168 | 7_2:+54682257 | Msa1063130:three_prime_UTR |
| GAAATGGAAATCCTTGACTA+AGG | 0.502988 | 7_2:+54681294 | Msa1063130:CDS |
| CAGAAAAGTAGGTAAGAGAA+AGG | 0.505983 | 7_2:+54680921 | Msa1063130:intron |
| GAATCAAAGAGACAAAGGTT+AGG | 0.506969 | 7_2:-54679003 | None:intergenic |
| AGAACGAAGACGATGACAAA+GGG | 0.510462 | 7_2:+54679795 | Msa1063130:exon |
| CCTCTTCCTCATCATCTTGG+TGG | 0.513999 | 7_2:-54682169 | None:intergenic |
| CTGAGGGAAGTTCAAGTGGC+TGG | 0.523259 | 7_2:-54682368 | None:intergenic |
| ATGTAAACTTACAGCTGATA+CGG | 0.526858 | 7_2:-54681173 | None:intergenic |
| AAAGACTAAGAAGGAGAAGA+AGG | 0.533667 | 7_2:+54680969 | Msa1063130:CDS |
| AATGTTTCATTGGTGGAGGG+AGG | 0.535007 | 7_2:+54682261 | Msa1063130:three_prime_UTR |
| CAGGAAGACGAAGAAAGCGC+TGG | 0.539312 | 7_2:-54681025 | None:intergenic |
| CCACCAAGATGATGAGGAAG+AGG | 0.540543 | 7_2:+54682169 | Msa1063130:CDS |
| GGATTTCAGAAAGACTTTCA+AGG | 0.542513 | 7_2:+54681129 | Msa1063130:CDS |
| GAAGGTGCCAAAGACTAAGA+AGG | 0.548134 | 7_2:+54680960 | Msa1063130:CDS |
| GAAGAGAATCAAAGAGACAA+AGG | 0.548401 | 7_2:-54679008 | None:intergenic |
| AATAATGAAGATGAAGCAAG+TGG | 0.555668 | 7_2:+54681802 | Msa1063130:CDS |
| GGCTGCTGCTAAACCTGAGA+AGG | 0.556201 | 7_2:+54680942 | Msa1063130:CDS |
| TGAAGATGAAGCAAGTGGAG+AGG | 0.558529 | 7_2:+54681807 | Msa1063130:CDS |
| ATGGATGAAGGGTTGAAGAG+AGG | 0.560174 | 7_2:-54679071 | None:intergenic |
| ACTTTGATTGTAGGTTGGAA+AGG | 0.560820 | 7_2:+54681261 | Msa1063130:intron |
| GCATTGTGCCTCAAATGTGT+TGG | 0.591610 | 7_2:+54682423 | Msa1063130:three_prime_UTR |
| TTGGTGCATGCATAGTGTGC+AGG | 0.592433 | 7_2:-54682507 | None:intergenic |
| GGCAGAGAACCCTAATGTGA+AGG | 0.592629 | 7_2:+54681150 | Msa1063130:CDS |
| GAAGACGATGACAAAGGGCA+AGG | 0.595311 | 7_2:+54679800 | Msa1063130:exon |
| AAAAGCTCCATATGAAGCCA+AGG | 0.600500 | 7_2:+54681586 | Msa1063130:CDS |
| TATAATGTTTCATTGGTGGA+GGG | 0.601363 | 7_2:+54682258 | Msa1063130:three_prime_UTR |
| TTCAGCGGACGATGACGAGG+AGG | 0.606822 | 7_2:+54681753 | Msa1063130:CDS |
| TTGTAGGTTGGAAAGGCTGG+AGG | 0.616392 | 7_2:+54681268 | Msa1063130:intron |
| AAGACGATGACAAAGGGCAA+GGG | 0.619855 | 7_2:+54679801 | Msa1063130:exon |
| AAGTTCAGCGGACGATGACG+AGG | 0.620749 | 7_2:+54681750 | Msa1063130:CDS |
| ACAACTGAGGGAAGTTCAAG+TGG | 0.622358 | 7_2:-54682372 | None:intergenic |
| ATTGCTTACAGCCTTAGTCA+AGG | 0.624911 | 7_2:-54681305 | None:intergenic |
| AGGAAGACGAAGAAAGCGCT+GGG | 0.627394 | 7_2:-54681024 | None:intergenic |
| GGATGACCACCAAGATGATG+AGG | 0.630902 | 7_2:+54682163 | Msa1063130:intron |
| ATGTTGACAGCCAAGTTCAG+CGG | 0.635286 | 7_2:+54681738 | Msa1063130:intron |
| GGGAACAGCAAAGACTTCAA+GGG | 0.641543 | 7_2:+54679821 | Msa1063130:CDS |
| TAGAACGAAGACGATGACAA+AGG | 0.642019 | 7_2:+54679794 | Msa1063130:exon |
| GTACAATAACCAACAACTGA+GGG | 0.647202 | 7_2:-54682384 | None:intergenic |
| AGTACAATAACCAACAACTG+AGG | 0.654621 | 7_2:-54682385 | None:intergenic |
| TATGAATGCTTATAATAACA+AGG | 0.656932 | 7_2:+54681640 | Msa1063130:CDS |
| ATTTGAGGCACAATGCACAA+AGG | 0.700540 | 7_2:-54682416 | None:intergenic |
| TGATGAGGAAGAGGACGACG+AGG | 0.702863 | 7_2:+54682178 | Msa1063130:CDS |
| AAGACGAAGAAAGCGCTGGG+AGG | 0.712358 | 7_2:-54681021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGTTTTTTTTTTTTTTA+AGG | + | chr7_2:54679288-54679307 | Msa1063130:intron | 10.0% |
| !! | ATAATCATTAATCATAAAAA+GGG | - | chr7_2:54679442-54679461 | None:intergenic | 10.0% |
| !! | AATAATCATTAATCATAAAA+AGG | - | chr7_2:54679443-54679462 | None:intergenic | 10.0% |
| !!! | TTTTTAAATAGTATTTTTGT+TGG | + | chr7_2:54681392-54681411 | Msa1063130:intron | 10.0% |
| !!! | TTATTTTAAAGAAAAATATG+CGG | - | chr7_2:54682075-54682094 | None:intergenic | 10.0% |
| !!! | TTAAGGTTTATGTTTTTTTT+AGG | + | chr7_2:54679177-54679196 | Msa1063130:intron | 15.0% |
| !! | TAATCATTAATCATAAAAAG+GGG | - | chr7_2:54679441-54679460 | None:intergenic | 15.0% |
| !! | TATATATCTATCTATTAAAG+AGG | - | chr7_2:54680090-54680109 | None:intergenic | 15.0% |
| !!! | TTTTTATTCAAAAAATGTTC+TGG | + | chr7_2:54680257-54680276 | Msa1063130:intron | 15.0% |
| !! | GAAATTAGAAATAAGAAAAA+AGG | - | chr7_2:54680446-54680465 | None:intergenic | 15.0% |
| !!! | ATTTTTATTCAAAAAATGTC+TGG | + | chr7_2:54680472-54680491 | Msa1063130:intron | 15.0% |
| !!! | TTTTTATTCTAAAAATGTTC+TGG | + | chr7_2:54680672-54680691 | Msa1063130:intron | 15.0% |
| !!! | ATAGTTTTCTATTTATTCTA+AGG | + | chr7_2:54680780-54680799 | Msa1063130:intron | 15.0% |
| !! | ACATTCAAAATAATAAAGTT+AGG | - | chr7_2:54681560-54681579 | None:intergenic | 15.0% |
| !!! | CTTTATTATTTTGAATGTAA+AGG | + | chr7_2:54681562-54681581 | Msa1063130:intron | 15.0% |
| !!! | TTCTTTGTTTTTTGTGTTTA+AGG | + | chr7_2:54679160-54679179 | Msa1063130:intron | 20.0% |
| !!! | TTTGTTTTGTTTTGTGTTTA+AGG | + | chr7_2:54679264-54679283 | Msa1063130:intron | 20.0% |
| !! | TACTTTGATATTATGTGATA+TGG | + | chr7_2:54679462-54679481 | Msa1063130:intron | 20.0% |
| !! | TGATTATAGATACTTTATAG+CGG | + | chr7_2:54680008-54680027 | Msa1063130:intron | 20.0% |
| !! | TACAATAGAAATACGAAAAA+AGG | - | chr7_2:54680237-54680256 | None:intergenic | 20.0% |
| !! | TAGAAATACGAAGAAAAAAA+AGG | - | chr7_2:54680640-54680659 | None:intergenic | 20.0% |
| !! | CAACTGTTACAAATATTAAT+TGG | - | chr7_2:54680754-54680773 | None:intergenic | 20.0% |
| !! | TATGAATGCTTATAATAACA+AGG | + | chr7_2:54681640-54681659 | Msa1063130:CDS | 20.0% |
| !!! | CTAATTTGTTCTTACAAAAT+TGG | - | chr7_2:54681977-54681996 | None:intergenic | 20.0% |
| !!! | CAATTTTGTAAGAACAAATT+AGG | + | chr7_2:54681975-54681994 | Msa1063130:intron | 20.0% |
| !! | CTTGAAATATAATGTTTCAT+TGG | + | chr7_2:54682251-54682270 | Msa1063130:three_prime_UTR | 20.0% |
| ! | ATGTGATATGGAAAAATTGA+AGG | + | chr7_2:54679474-54679493 | Msa1063130:intron | 25.0% |
| ! | TGTGATATGGAAAAATTGAA+GGG | + | chr7_2:54679475-54679494 | Msa1063130:intron | 25.0% |
| !! | ATGAATTATGCTTGTTACTT+AGG | + | chr7_2:54679530-54679549 | Msa1063130:intron | 25.0% |
| !!! | TAAGCTTGTGAAATTGATTT+TGG | + | chr7_2:54679727-54679746 | Msa1063130:intron | 25.0% |
| ! | TGTTAACTGATATCGTAATA+TGG | + | chr7_2:54679895-54679914 | Msa1063130:intron | 25.0% |
| !!! | ATTGATAGCACTTTTATACA+TGG | - | chr7_2:54679985-54680004 | None:intergenic | 25.0% |
| ! | ATACACATTTATTACTCTCT+AGG | - | chr7_2:54680323-54680342 | None:intergenic | 25.0% |
| !!! | TGTTTTAAAAAACCTTTGCT+TGG | - | chr7_2:54680393-54680412 | None:intergenic | 25.0% |
| !!! | CTATTTATTCTAAGGTTCTT+TGG | + | chr7_2:54680788-54680807 | Msa1063130:intron | 25.0% |
| !! | GAGCTTGAATAATTTTATAG+CGG | - | chr7_2:54680816-54680835 | None:intergenic | 25.0% |
| !! | TAAGTCAGACAACTTTAAAA+AGG | - | chr7_2:54681088-54681107 | None:intergenic | 25.0% |
| ! | AAATCCTCACTATAAAAGAA+TGG | - | chr7_2:54681115-54681134 | None:intergenic | 25.0% |
| ! | TAATTCGTGTCTGAAAAATT+TGG | + | chr7_2:54681235-54681254 | Msa1063130:intron | 25.0% |
| ! | GGATTTATTCTGTTGAATAA+TGG | + | chr7_2:54681511-54681530 | Msa1063130:intron | 25.0% |
| ! | ATAATAAAGTTAGGATCAGA+CGG | - | chr7_2:54681551-54681570 | None:intergenic | 25.0% |
| ! | AAACAACAAAACTAGAAACA+CGG | - | chr7_2:54681677-54681696 | None:intergenic | 25.0% |
| !!! | TCTTACAAAATTGGTTTGTA+AGG | - | chr7_2:54681968-54681987 | None:intergenic | 25.0% |
| ! | TATGAAAACAAACCTTCATT+TGG | + | chr7_2:54682102-54682121 | Msa1063130:intron | 25.0% |
| ! | GAAATATAATGTTTCATTGG+TGG | + | chr7_2:54682254-54682273 | Msa1063130:three_prime_UTR | 25.0% |
| ! | GAATATTTATCTCTTATTGC+TGG | + | chr7_2:54682332-54682351 | Msa1063130:three_prime_UTR | 25.0% |
| ! | CAAACTATTCAAACTAAGTT+TGG | - | chr7_2:54682529-54682548 | None:intergenic | 25.0% |
| TCACCTTAAAAATGGATGAA+GGG | - | chr7_2:54679085-54679104 | None:intergenic | 30.0% | |
| AAAAAGGGTCACCTTAAAAA+TGG | - | chr7_2:54679093-54679112 | None:intergenic | 30.0% | |
| CAGAGGAAAAAAGAGAAAAA+GGG | - | chr7_2:54679108-54679127 | None:intergenic | 30.0% | |
| ATGATGTTTGATGAGTTATG+AGG | + | chr7_2:54679216-54679235 | Msa1063130:intron | 30.0% | |
| TTGGTCAAATATCTGAATTG+AGG | + | chr7_2:54679375-54679394 | Msa1063130:intron | 30.0% | |
| !!! | TAGGTTTTAAATCACAGTCA+TGG | + | chr7_2:54679549-54679568 | Msa1063130:intron | 30.0% |
| TTTAAATCACAGTCATGGTT+TGG | + | chr7_2:54679554-54679573 | Msa1063130:intron | 30.0% | |
| !!! | TGATCACTGACTTTTTTTGT+TGG | + | chr7_2:54679677-54679696 | Msa1063130:intron | 30.0% |
| CCAACTGTCCAAAAAAATAT+AGG | - | chr7_2:54680044-54680063 | None:intergenic | 30.0% | |
| !!! | CCTATATTTTTTTGGACAGT+TGG | + | chr7_2:54680041-54680060 | Msa1063130:intron | 30.0% |
| ! | TTAAAGAGGAGAAACTTTTG+CGG | - | chr7_2:54680076-54680095 | None:intergenic | 30.0% |
| !! | AAATAAGAAAAAAGGTGCCT+CGG | - | chr7_2:54680438-54680457 | None:intergenic | 30.0% |
| !!! | TGTTTTAAAAAACCATCGCT+TGG | - | chr7_2:54680587-54680606 | None:intergenic | 30.0% |
| TTGCTCAAATATTACTCTCT+AGG | - | chr7_2:54680717-54680736 | None:intergenic | 30.0% | |
| ACAAATATTAATTGGTGCAG+TGG | - | chr7_2:54680746-54680765 | None:intergenic | 30.0% | |
| ! | TCTGTTGTTTACAGAAAAGT+AGG | + | chr7_2:54680910-54680929 | Msa1063130:intron | 30.0% |
| ! | TGTTCCATTCTTTTATAGTG+AGG | + | chr7_2:54681108-54681127 | Msa1063130:intron | 30.0% |
| ATGTAAACTTACAGCTGATA+CGG | - | chr7_2:54681176-54681195 | None:intergenic | 30.0% | |
| !! | ATTTGGTGTACTTTGATTGT+AGG | + | chr7_2:54681252-54681271 | Msa1063130:intron | 30.0% |
| ACACAGATATGTTAATACAG+TGG | - | chr7_2:54681465-54681484 | None:intergenic | 30.0% | |
| GACATCATTATACTGAAAAG+AGG | + | chr7_2:54681490-54681509 | Msa1063130:intron | 30.0% | |
| AACAACAAAACTAGAAACAC+GGG | - | chr7_2:54681676-54681695 | None:intergenic | 30.0% | |
| AATAATGAAGATGAAGCAAG+TGG | + | chr7_2:54681802-54681821 | Msa1063130:CDS | 30.0% | |
| ! | TTGTCCATCAAACTCTAAAA+GGG | + | chr7_2:54681933-54681952 | Msa1063130:intron | 30.0% |
| TCTAAAGAATGAACCATCTT+AGG | - | chr7_2:54682013-54682032 | None:intergenic | 30.0% | |
| ! | TTTTATGCCCCTTTAAACTT+TGG | - | chr7_2:54682045-54682064 | None:intergenic | 30.0% |
| ! | ACACATTTTATGCCAAATGA+AGG | - | chr7_2:54682117-54682136 | None:intergenic | 30.0% |
| ATATAATGTTTCATTGGTGG+AGG | + | chr7_2:54682257-54682276 | Msa1063130:three_prime_UTR | 30.0% | |
| TATAATGTTTCATTGGTGGA+GGG | + | chr7_2:54682258-54682277 | Msa1063130:three_prime_UTR | 30.0% | |
| !! | TTTCATTTTGATCGATGCTT+TGG | + | chr7_2:54682461-54682480 | Msa1063130:three_prime_UTR | 30.0% |
| GAATCAAAGAGACAAAGGTT+AGG | - | chr7_2:54679006-54679025 | None:intergenic | 35.0% | |
| GAAGAGAATCAAAGAGACAA+AGG | - | chr7_2:54679011-54679030 | None:intergenic | 35.0% | |
| !! | CAACCCTTCATCCATTTTTA+AGG | + | chr7_2:54679079-54679098 | Msa1063130:five_prime_UTR | 35.0% |
| GTCACCTTAAAAATGGATGA+AGG | - | chr7_2:54679086-54679105 | None:intergenic | 35.0% | |
| GCAGAGGAAAAAAGAGAAAA+AGG | - | chr7_2:54679109-54679128 | None:intergenic | 35.0% | |
| CAAAAGAGATATTGAAGCAG+AGG | - | chr7_2:54679125-54679144 | None:intergenic | 35.0% | |
| ! | CTCTGCTTCAATATCTCTTT+TGG | + | chr7_2:54679123-54679142 | Msa1063130:intron | 35.0% |
| GAGAAAAGATGCTGAATTGT+TGG | + | chr7_2:54679356-54679375 | Msa1063130:intron | 35.0% | |
| CCATAATACAACTGTCATTG+AGG | - | chr7_2:54679617-54679636 | None:intergenic | 35.0% | |
| CCTCAATGACAGTTGTATTA+TGG | + | chr7_2:54679614-54679633 | Msa1063130:intron | 35.0% | |
| TCTCCAAGACGAAAAAACTT+TGG | + | chr7_2:54679637-54679656 | Msa1063130:intron | 35.0% | |
| !!! | ACACCAAAGTTTTTTCGTCT+TGG | - | chr7_2:54679643-54679662 | None:intergenic | 35.0% |
| !!! | ACTTTTTTTGTTGGAAACCC+TGG | + | chr7_2:54679686-54679705 | Msa1063130:intron | 35.0% |
| !! | GCTTGTGAAATTGATTTTGG+TGG | + | chr7_2:54679730-54679749 | Msa1063130:intron | 35.0% |
| ! | TTTTCAACTGTAGATCGTCT+TGG | + | chr7_2:54679768-54679787 | Msa1063130:intron | 35.0% |
| !!! | TTTTGAAACCAGTTGATGAC+CGG | + | chr7_2:54679847-54679866 | Msa1063130:CDS | 35.0% |
| TTGTATGTCATTGTCCGTAA+AGG | + | chr7_2:54679941-54679960 | Msa1063130:intron | 35.0% | |
| GTAAATCACCAACACCTTTA+CGG | - | chr7_2:54679958-54679977 | None:intergenic | 35.0% | |
| !!! | GTCAGAGGCCTATATTTTTT+TGG | + | chr7_2:54680033-54680052 | Msa1063130:intron | 35.0% |
| !! | AAATACGAAAAAAGGTGCCA+CGG | - | chr7_2:54680229-54680248 | None:intergenic | 35.0% |
| !!! | CGATGGTTTTTTAAAACACG+AGG | + | chr7_2:54680589-54680608 | Msa1063130:intron | 35.0% |
| TCAAATATTACTCTCTAGGC+GGG | - | chr7_2:54680713-54680732 | None:intergenic | 35.0% | |
| CTCAAATATTACTCTCTAGG+CGG | - | chr7_2:54680714-54680733 | None:intergenic | 35.0% | |
| CAGAAAAGTAGGTAAGAGAA+AGG | + | chr7_2:54680921-54680940 | Msa1063130:intron | 35.0% | |
| ! | TTCTTCTCCTTCTTAGTCTT+TGG | - | chr7_2:54680970-54680989 | None:intergenic | 35.0% |
| AAAGACTAAGAAGGAGAAGA+AGG | + | chr7_2:54680969-54680988 | Msa1063130:CDS | 35.0% | |
| GGATTTCAGAAAGACTTTCA+AGG | + | chr7_2:54681129-54681148 | Msa1063130:CDS | 35.0% | |
| ! | ACTTTGATTGTAGGTTGGAA+AGG | + | chr7_2:54681261-54681280 | Msa1063130:intron | 35.0% |
| GAAATGGAAATCCTTGACTA+AGG | + | chr7_2:54681294-54681313 | Msa1063130:CDS | 35.0% | |
| GTTGTCCATCAAACTCTAAA+AGG | + | chr7_2:54681932-54681951 | Msa1063130:intron | 35.0% | |
| !! | AAATTGGTTTGTAAGGTGAG+CGG | - | chr7_2:54681961-54681980 | None:intergenic | 35.0% |
| TGACACGTTCCAAAGTTTAA+AGG | + | chr7_2:54682033-54682052 | Msa1063130:intron | 35.0% | |
| GACACGTTCCAAAGTTTAAA+GGG | + | chr7_2:54682034-54682053 | Msa1063130:intron | 35.0% | |
| ACACGTTCCAAAGTTTAAAG+GGG | + | chr7_2:54682035-54682054 | Msa1063130:intron | 35.0% | |
| !! | TTTTCTAGTAGAGCAACTCT+TGG | + | chr7_2:54682294-54682313 | Msa1063130:three_prime_UTR | 35.0% |
| GTACAATAACCAACAACTGA+GGG | - | chr7_2:54682387-54682406 | None:intergenic | 35.0% | |
| AGTACAATAACCAACAACTG+AGG | - | chr7_2:54682388-54682407 | None:intergenic | 35.0% | |
| TACTTTAGCCAACACATTTG+AGG | - | chr7_2:54682434-54682453 | None:intergenic | 35.0% | |
| ! | TTCTCTTCTTGCTGTGTCTT+CGG | + | chr7_2:54679023-54679042 | Msa1063130:five_prime_UTR | 40.0% |
| TAGAACGAAGACGATGACAA+AGG | + | chr7_2:54679794-54679813 | Msa1063130:exon | 40.0% | |
| AGAACGAAGACGATGACAAA+GGG | + | chr7_2:54679795-54679814 | Msa1063130:exon | 40.0% | |
| GCGATGATACAGAAACTAAC+CGG | - | chr7_2:54679869-54679888 | None:intergenic | 40.0% | |
| ! | TACTTTATAGCGGAAGTCAG+AGG | + | chr7_2:54680018-54680037 | Msa1063130:intron | 40.0% |
| !!! | GCAAAGGCTTTTAAAACACG+AGG | + | chr7_2:54680186-54680205 | Msa1063130:intron | 40.0% |
| TAAAACACGAGGTTGTGAGT+TGG | + | chr7_2:54680197-54680216 | Msa1063130:intron | 40.0% | |
| ATGCACATTTATTACCCTCC+AGG | - | chr7_2:54680516-54680535 | None:intergenic | 40.0% | |
| !! | CGAAGAAAAAAAAGGTGCCT+CGG | - | chr7_2:54680632-54680651 | None:intergenic | 40.0% |
| AAATATTACTCTCTAGGCGG+GGG | - | chr7_2:54680711-54680730 | None:intergenic | 40.0% | |
| CAAATATTACTCTCTAGGCG+GGG | - | chr7_2:54680712-54680731 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGATCTTTCT+TGG | - | chr7_2:54680995-54681014 | None:intergenic | 40.0% |
| !!! | GGAGGTCTTTTTGGTTTGTT+GGG | - | chr7_2:54681006-54681025 | None:intergenic | 40.0% |
| TGACAGACAGAGATACTAAC+AGG | - | chr7_2:54681047-54681066 | None:intergenic | 40.0% | |
| GGTGTACTTTGATTGTAGGT+TGG | + | chr7_2:54681256-54681275 | Msa1063130:intron | 40.0% | |
| ATTGCTTACAGCCTTAGTCA+AGG | - | chr7_2:54681308-54681327 | None:intergenic | 40.0% | |
| AAAAGCTCCATATGAAGCCA+AGG | + | chr7_2:54681586-54681605 | Msa1063130:CDS | 40.0% | |
| ! | AACTTTCCTTTTTGCAGCCT+TGG | - | chr7_2:54681606-54681625 | None:intergenic | 40.0% |
| !!! | GGTACCCTTTTAGAGTTTGA+TGG | - | chr7_2:54681940-54681959 | None:intergenic | 40.0% |
| GCTCAGTTCAAAACCTAAGA+TGG | + | chr7_2:54681997-54682016 | Msa1063130:intron | 40.0% | |
| ! | ATTTGAGGCACAATGCACAA+AGG | - | chr7_2:54682419-54682438 | None:intergenic | 40.0% |
| ATGGATGAAGGGTTGAAGAG+AGG | - | chr7_2:54679074-54679093 | None:intergenic | 45.0% | |
| ! | GTGTTTTGTAGTCACAGCCA+GGG | - | chr7_2:54679706-54679725 | None:intergenic | 45.0% |
| ! | AGTGTTTTGTAGTCACAGCC+AGG | - | chr7_2:54679707-54679726 | None:intergenic | 45.0% |
| AAGACGATGACAAAGGGCAA+GGG | + | chr7_2:54679801-54679820 | Msa1063130:exon | 45.0% | |
| AGGGAACAGCAAAGACTTCA+AGG | + | chr7_2:54679820-54679839 | Msa1063130:CDS | 45.0% | |
| GGGAACAGCAAAGACTTCAA+GGG | + | chr7_2:54679821-54679840 | Msa1063130:CDS | 45.0% | |
| GAAACTAACCGGTCATCAAC+TGG | - | chr7_2:54679858-54679877 | None:intergenic | 45.0% | |
| ! | GTCATTGTCCGTAAAGGTGT+TGG | + | chr7_2:54679947-54679966 | Msa1063130:intron | 45.0% |
| !!! | TTTTTTTGGACAGTTGGCCG+TGG | + | chr7_2:54680047-54680066 | Msa1063130:intron | 45.0% |
| ! | AGAAACTTTTGCGGTAGCCA+CGG | - | chr7_2:54680067-54680086 | None:intergenic | 45.0% |
| TCTGGTCAAGATCTGAAGAC+TGG | + | chr7_2:54680275-54680294 | Msa1063130:intron | 45.0% | |
| AACCTTTGCTTGGCACTATG+CGG | - | chr7_2:54680383-54680402 | None:intergenic | 45.0% | |
| !! | TAAGAAAAAAGGTGCCTCGG+CGG | - | chr7_2:54680435-54680454 | None:intergenic | 45.0% |
| ATTTATTACCCTCCAGGCGA+AGG | - | chr7_2:54680510-54680529 | None:intergenic | 45.0% | |
| AATATTACTCTCTAGGCGGG+GGG | - | chr7_2:54680710-54680729 | None:intergenic | 45.0% | |
| AATTATTCAAGCTCCGCCAC+CGG | + | chr7_2:54680822-54680841 | Msa1063130:intron | 45.0% | |
| TCCTGTAATACGACTTCCAC+CGG | - | chr7_2:54680844-54680863 | None:intergenic | 45.0% | |
| ! | TTAGTCTTTGGCACCTTCTC+AGG | - | chr7_2:54680958-54680977 | None:intergenic | 45.0% |
| !! | GAAGGTGCCAAAGACTAAGA+AGG | + | chr7_2:54680960-54680979 | Msa1063130:CDS | 45.0% |
| !!! | GGGAGGTCTTTTTGGTTTGT+TGG | - | chr7_2:54681007-54681026 | None:intergenic | 45.0% |
| CTGATACGGCCTTCACATTA+GGG | - | chr7_2:54681162-54681181 | None:intergenic | 45.0% | |
| ! | TGATTGTAGGTTGGAAAGGC+TGG | + | chr7_2:54681265-54681284 | Msa1063130:intron | 45.0% |
| TTTGCAGCCTTGGCTTCATA+TGG | - | chr7_2:54681596-54681615 | None:intergenic | 45.0% | |
| ATGAAGCCAAGGCTGCAAAA+AGG | + | chr7_2:54681597-54681616 | Msa1063130:CDS | 45.0% | |
| ATGTTGACAGCCAAGTTCAG+CGG | + | chr7_2:54681738-54681757 | Msa1063130:intron | 45.0% | |
| TGAAGATGAAGCAAGTGGAG+AGG | + | chr7_2:54681807-54681826 | Msa1063130:CDS | 45.0% | |
| TAACGATTGCTACCCCACAA+CGG | + | chr7_2:54681902-54681921 | Msa1063130:intron | 45.0% | |
| ACAACCATAACACCGTTGTG+GGG | - | chr7_2:54681917-54681936 | None:intergenic | 45.0% | |
| GACAACCATAACACCGTTGT+GGG | - | chr7_2:54681918-54681937 | None:intergenic | 45.0% | |
| ! | ACCATCTCTCCTTGTTGTAC+AGG | + | chr7_2:54682142-54682161 | Msa1063130:intron | 45.0% |
| TCCTGTACAACAAGGAGAGA+TGG | - | chr7_2:54682146-54682165 | None:intergenic | 45.0% | |
| AATGTTTCATTGGTGGAGGG+AGG | + | chr7_2:54682261-54682280 | Msa1063130:three_prime_UTR | 45.0% | |
| ACAACTGAGGGAAGTTCAAG+TGG | - | chr7_2:54682375-54682394 | None:intergenic | 45.0% | |
| CTTGAACTTCCCTCAGTTGT+TGG | + | chr7_2:54682375-54682394 | Msa1063130:three_prime_UTR | 45.0% | |
| GCATTGTGCCTCAAATGTGT+TGG | + | chr7_2:54682423-54682442 | Msa1063130:three_prime_UTR | 45.0% | |
| GAAGACGATGACAAAGGGCA+AGG | + | chr7_2:54679800-54679819 | Msa1063130:exon | 50.0% | |
| !! | TACGAAAAAAGGTGCCACGG+TGG | - | chr7_2:54680226-54680245 | None:intergenic | 50.0% |
| TCAAGATCTGAACCTTCGCC+TGG | + | chr7_2:54680495-54680514 | Msa1063130:intron | 50.0% | |
| TTCTGAGTTCGAGTCTTCCG+AGG | + | chr7_2:54680612-54680631 | Msa1063130:intron | 50.0% | |
| TGTAATACGACTTCCACCGG+TGG | - | chr7_2:54680841-54680860 | None:intergenic | 50.0% | |
| ACCGGTGGAAGTCGTATTAC+AGG | + | chr7_2:54680840-54680859 | Msa1063130:intron | 50.0% | |
| !!! | AAAGCGCTGGGAGGTCTTTT+TGG | - | chr7_2:54681015-54681034 | None:intergenic | 50.0% |
| !! | AGGAAGACGAAGAAAGCGCT+GGG | - | chr7_2:54681027-54681046 | None:intergenic | 50.0% |
| GGCAGAGAACCCTAATGTGA+AGG | + | chr7_2:54681150-54681169 | Msa1063130:CDS | 50.0% | |
| GCTGATACGGCCTTCACATT+AGG | - | chr7_2:54681163-54681182 | None:intergenic | 50.0% | |
| ! | TTGTAGGTTGGAAAGGCTGG+AGG | + | chr7_2:54681268-54681287 | Msa1063130:intron | 50.0% |
| GAAAGGCTGGAGGAGAGAAA+TGG | + | chr7_2:54681278-54681297 | Msa1063130:CDS | 50.0% | |
| GGACAACCATAACACCGTTG+TGG | - | chr7_2:54681919-54681938 | None:intergenic | 50.0% | |
| GGTGGTCATCCTGTACAACA+AGG | - | chr7_2:54682154-54682173 | None:intergenic | 50.0% | |
| GGATGACCACCAAGATGATG+AGG | + | chr7_2:54682163-54682182 | Msa1063130:intron | 50.0% | |
| CCTCTTCCTCATCATCTTGG+TGG | - | chr7_2:54682172-54682191 | None:intergenic | 50.0% | |
| CCACCAAGATGATGAGGAAG+AGG | + | chr7_2:54682169-54682188 | Msa1063130:CDS | 50.0% | |
| CGTCCTCTTCCTCATCATCT+TGG | - | chr7_2:54682175-54682194 | None:intergenic | 50.0% | |
| TTGGTGCATGCATAGTGTGC+AGG | - | chr7_2:54682510-54682529 | None:intergenic | 50.0% | |
| AGCCACGTAGCGACAAGCAA+AGG | + | chr7_2:54680170-54680189 | Msa1063130:intron | 55.0% | |
| AGCCTTTGCTTGTCGCTACG+TGG | - | chr7_2:54680175-54680194 | None:intergenic | 55.0% | |
| ! | TTGTGAGTTGGAGTCCACCG+TGG | + | chr7_2:54680209-54680228 | Msa1063130:intron | 55.0% |
| AGCCGCATAGTGCCAAGCAA+AGG | + | chr7_2:54680378-54680397 | Msa1063130:intron | 55.0% | |
| AGATCTGAACCTTCGCCTGG+AGG | + | chr7_2:54680498-54680517 | Msa1063130:intron | 55.0% | |
| GATCTGAACCTTCGCCTGGA+GGG | + | chr7_2:54680499-54680518 | Msa1063130:intron | 55.0% | |
| AACCATCGCTTGGCACTACG+CGG | - | chr7_2:54680577-54680596 | None:intergenic | 55.0% | |
| AATACGACTTCCACCGGTGG+CGG | - | chr7_2:54680838-54680857 | None:intergenic | 55.0% | |
| GGCTGCTGCTAAACCTGAGA+AGG | + | chr7_2:54680942-54680961 | Msa1063130:CDS | 55.0% | |
| !! | AAGACGAAGAAAGCGCTGGG+AGG | - | chr7_2:54681024-54681043 | None:intergenic | 55.0% |
| ! | CAGGAAGACGAAGAAAGCGC+TGG | - | chr7_2:54681028-54681047 | None:intergenic | 55.0% |
| TCGTCATCGTCCGCTGAACT+TGG | - | chr7_2:54681751-54681770 | None:intergenic | 55.0% | |
| AAGTTCAGCGGACGATGACG+AGG | + | chr7_2:54681750-54681769 | Msa1063130:CDS | 55.0% | |
| ! | GCTACCCCACAACGGTGTTA+TGG | + | chr7_2:54681910-54681929 | Msa1063130:intron | 55.0% |
| TGATGAGGAAGAGGACGACG+AGG | + | chr7_2:54682178-54682197 | Msa1063130:CDS | 55.0% | |
| CTGAGGGAAGTTCAAGTGGC+TGG | - | chr7_2:54682371-54682390 | None:intergenic | 55.0% | |
| TTGTGAGTTCGAGTCCGCCG+AGG | + | chr7_2:54680418-54680437 | Msa1063130:intron | 60.0% | |
| TATTCAAGCTCCGCCACCGG+TGG | + | chr7_2:54680825-54680844 | Msa1063130:intron | 60.0% | |
| TTCAGCGGACGATGACGAGG+AGG | + | chr7_2:54681753-54681772 | Msa1063130:CDS | 60.0% | |
| AGCCGCGTAGTGCCAAGCGA+TGG | + | chr7_2:54680572-54680591 | Msa1063130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 54678997 | 54682559 | 54678997 | ID=Msa1063130;Name=Msa1063130 |
| chr7_2 | mRNA | 54678997 | 54682559 | 54678997 | ID=Msa1063130-mRNA-1;Parent=Msa1063130;Name=Msa1063130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|1|1|1|0.85|0.75|8|324|172 |
| chr7_2 | exon | 54678997 | 54679100 | 54678997 | ID=Msa1063130-mRNA-1:exon:10030;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54679781 | 54679868 | 54679781 | ID=Msa1063130-mRNA-1:exon:10031;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54680924 | 54681046 | 54680924 | ID=Msa1063130-mRNA-1:exon:10032;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54681126 | 54681183 | 54681126 | ID=Msa1063130-mRNA-1:exon:10033;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54681274 | 54681318 | 54681274 | ID=Msa1063130-mRNA-1:exon:10034;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54681584 | 54681661 | 54681584 | ID=Msa1063130-mRNA-1:exon:10035;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54681748 | 54681828 | 54681748 | ID=Msa1063130-mRNA-1:exon:10036;Parent=Msa1063130-mRNA-1 |
| chr7_2 | exon | 54682164 | 54682559 | 54682164 | ID=Msa1063130-mRNA-1:exon:10037;Parent=Msa1063130-mRNA-1 |
| chr7_2 | five_prime_UTR | 54678997 | 54679100 | 54678997 | ID=Msa1063130-mRNA-1:five_prime_utr;Parent=Msa1063130-mRNA-1 |
| chr7_2 | five_prime_UTR | 54679781 | 54679806 | 54679781 | ID=Msa1063130-mRNA-1:five_prime_utr;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54679807 | 54679868 | 54679807 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54680924 | 54681046 | 54680924 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54681126 | 54681183 | 54681126 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54681274 | 54681318 | 54681274 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54681584 | 54681661 | 54681584 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54681748 | 54681828 | 54681748 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | CDS | 54682164 | 54682235 | 54682164 | ID=Msa1063130-mRNA-1:cds;Parent=Msa1063130-mRNA-1 |
| chr7_2 | three_prime_UTR | 54682236 | 54682559 | 54682236 | ID=Msa1063130-mRNA-1:three_prime_utr;Parent=Msa1063130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
