AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063320 MtrunA17_Chr7g0242521 93.697 238 14 1 1 238 1 237 2.45e-166 458
Msa1063320 MtrunA17_Chr7g0254981 55.303 132 53 2 13 141 50 178 7.98e-44 149
Msa1063320 MtrunA17_Chr2g0291021 49.045 157 72 5 13 166 49 200 1.10e-42 147
Msa1063320 MtrunA17_Chr1g0175091 50.000 138 63 4 2 138 246 378 4.80e-36 132
Msa1063320 MtrunA17_Chr7g0261911 50.000 144 57 4 1 138 250 384 4.51e-35 130
Msa1063320 MtrunA17_Chr7g0258551 47.287 129 64 2 13 141 212 336 2.89e-34 126
Msa1063320 MtrunA17_Chr1g0190301 43.226 155 80 5 13 166 175 322 3.36e-32 120
Msa1063320 MtrunA17_Chr2g0321461 42.282 149 63 3 13 141 45 190 1.40e-29 114
Msa1063320 MtrunA17_Chr2g0310011 45.802 131 65 2 13 140 35 162 3.52e-29 112
Msa1063320 MtrunA17_Chr6g0461641 42.953 149 66 3 9 141 38 183 4.12e-29 112
Msa1063320 MtrunA17_Chr5g0409731 41.958 143 64 3 13 141 25 162 1.15e-28 109
Msa1063320 MtrunA17_Chr7g0274471 42.636 129 71 1 13 141 218 343 4.15e-28 110
Msa1063320 MtrunA17_Chr8g0356501 36.082 194 94 5 13 198 37 208 1.24e-27 107
Msa1063320 MtrunA17_Chr4g0042451 39.310 145 72 4 9 141 13 153 2.38e-26 104
Msa1063320 MtrunA17_Chr5g0417521 38.095 147 72 4 9 141 11 152 6.31e-25 100
Msa1063320 MtrunA17_Chr1g0175071 43.478 138 72 3 3 138 165 298 1.64e-23 96.3
Msa1063320 MtrunA17_Chr2g0290991 32.778 180 96 3 9 176 35 201 4.88e-23 95.1
Msa1063320 MtrunA17_Chr1g0197171 35.256 156 79 3 13 159 44 186 2.09e-20 87.4
Msa1063320 MtrunA17_Chr1g0175081 45.238 84 42 2 9 92 18 97 1.76e-16 72.4
Msa1063320 MtrunA17_Chr7g0258531 36.111 144 78 4 1 138 201 336 1.88e-16 77.4
Msa1063320 MtrunA17_Chr3g0095611 34.839 155 89 6 2 149 5 154 1.25e-13 67.8
Msa1063320 MtrunA17_Chr2g0320231 59.322 59 21 1 15 73 99 154 3.75e-13 68.2
Msa1063320 MtrunA17_Chr8g0379121 57.627 59 22 1 15 73 113 168 6.05e-13 67.4
Msa1063320 MtrunA17_Chr7g0243081 55.000 60 24 1 15 74 73 129 8.48e-13 67.0
Msa1063320 MtrunA17_Chr6g0479431 53.448 58 24 1 15 72 204 258 2.05e-12 65.9
Msa1063320 MtrunA17_Chr2g0288601 61.538 52 17 1 15 66 73 121 2.31e-12 62.4
Msa1063320 MtrunA17_Chr8g0366281 52.542 59 25 1 15 73 175 230 4.98e-12 64.7
Msa1063320 MtrunA17_Chr1g0154261 53.448 58 24 1 15 72 128 182 7.68e-12 63.5
Msa1063320 MtrunA17_Chr3g0109981 39.773 88 50 1 15 102 276 360 8.87e-12 64.3
Msa1063320 MtrunA17_Chr5g0410741 53.448 58 24 1 15 72 221 275 2.14e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063320 AT2G01060.1 47.305 167 82 4 9 172 11 174 1.25e-45 154
Msa1063320 AT5G06800.1 49.275 138 66 2 9 146 188 321 6.50e-38 136
Msa1063320 AT5G06800.2 47.887 142 67 2 9 146 188 326 1.34e-37 135
Msa1063320 AT4G28610.1 48.529 136 56 3 9 138 221 348 4.78e-33 124
Msa1063320 AT1G79430.2 43.506 154 68 4 13 161 34 173 3.56e-32 120
Msa1063320 AT5G29000.1 44.286 140 72 3 2 138 177 313 4.62e-32 120
Msa1063320 AT5G29000.3 44.286 140 72 3 2 138 177 313 4.62e-32 120
Msa1063320 AT5G29000.2 44.286 140 72 3 2 138 220 356 6.78e-32 120
Msa1063320 AT3G24120.1 38.690 168 79 3 13 168 41 196 1.42e-30 115
Msa1063320 AT1G69580.1 43.046 151 64 4 9 141 30 176 1.72e-30 115
Msa1063320 AT1G69580.2 42.763 152 64 4 9 141 30 177 2.98e-30 115
Msa1063320 AT3G04450.4 38.012 171 93 5 9 170 194 360 1.59e-29 114
Msa1063320 AT3G04450.2 38.012 171 93 5 9 170 194 360 1.59e-29 114
Msa1063320 AT4G13640.1 39.412 170 75 4 13 168 37 192 2.43e-29 111
Msa1063320 AT3G04450.1 38.012 171 93 5 9 170 234 400 2.50e-29 114
Msa1063320 AT3G13040.3 43.537 147 74 3 1 141 228 371 7.76e-29 113
Msa1063320 AT3G13040.1 43.537 147 74 3 1 141 228 371 7.76e-29 113
Msa1063320 AT3G13040.2 43.537 147 74 3 1 141 228 371 7.76e-29 113
Msa1063320 AT3G24120.2 38.012 171 79 4 13 168 41 199 1.53e-28 109
Msa1063320 AT3G04030.3 42.953 149 65 4 9 141 41 185 2.05e-28 111
Msa1063320 AT5G18240.1 44.828 145 60 5 13 141 45 185 2.26e-28 111
Msa1063320 AT5G18240.4 44.828 145 60 5 13 141 45 185 2.26e-28 111
Msa1063320 AT4G13640.2 38.728 173 75 5 13 168 37 195 2.12e-27 106
Msa1063320 AT2G20400.2 44.094 127 67 2 13 138 231 354 6.01e-27 107
Msa1063320 AT2G01060.2 44.000 125 67 3 51 172 1 125 1.09e-26 103
Msa1063320 AT3G04030.2 42.282 149 65 5 9 141 41 184 8.01e-26 104
Msa1063320 AT2G20400.1 42.063 126 70 1 13 138 231 353 8.98e-26 103
Msa1063320 AT5G18240.5 43.448 145 60 6 13 141 45 183 3.66e-25 102
Msa1063320 AT5G45580.1 38.194 144 68 3 13 138 7 147 4.92e-25 99.8
Msa1063320 AT5G45580.2 38.194 144 68 3 13 138 23 163 6.70e-25 99.8
Msa1063320 AT3G04030.1 40.940 149 62 5 9 141 41 179 5.49e-24 99.0
Msa1063320 AT5G18240.2 42.759 145 57 6 13 141 45 179 7.56e-24 99.0
Msa1063320 AT5G18240.3 42.759 145 57 6 13 141 45 179 7.56e-24 99.0
Msa1063320 AT3G12730.1 37.778 135 73 3 13 139 23 154 4.12e-23 94.0
Msa1063320 AT5G06800.3 62.319 69 23 1 9 77 188 253 9.86e-23 94.0
Msa1063320 AT5G29000.4 47.872 94 46 1 2 95 220 310 4.94e-20 87.0
Msa1063320 AT3G04450.3 54.412 68 28 1 9 76 234 298 1.50e-18 83.2
Msa1063320 AT1G79430.1 38.655 119 57 3 48 161 1 108 7.21e-18 80.9
Msa1063320 AT2G42660.1 61.905 63 21 1 15 77 52 111 8.06e-16 74.7
Msa1063320 AT2G06020.1 50.820 61 27 1 13 73 86 143 1.03e-15 75.1
Msa1063320 AT2G40260.1 60.345 58 20 1 15 72 84 138 2.22e-14 72.0
Msa1063320 AT3G04030.5 39.091 110 50 3 48 141 1 109 3.75e-14 70.9
Msa1063320 AT4G04605.1 51.351 74 32 2 15 88 16 85 1.94e-13 67.8
Msa1063320 AT5G42630.2 50.000 74 33 2 15 87 107 177 2.60e-13 67.4
Msa1063320 AT5G42630.1 50.000 74 33 2 15 87 107 177 3.25e-13 67.8
Msa1063320 AT4G17695.1 50.769 65 29 1 15 79 166 227 8.37e-12 64.3
Msa1063320 AT5G16560.1 46.575 73 34 2 15 85 221 290 1.41e-11 63.9
Msa1063320 AT2G38300.1 55.932 59 23 1 15 73 56 111 1.96e-11 63.2
Msa1063320 AT2G02060.2 60.000 55 19 1 15 69 31 82 2.14e-11 62.4
Msa1063320 AT2G02060.1 60.000 55 19 1 15 69 31 82 2.14e-11 62.4
Msa1063320 AT1G32240.2 53.448 58 24 1 15 72 215 269 2.39e-11 63.2
Msa1063320 AT1G14600.1 55.932 59 23 1 15 73 25 80 2.46e-11 62.4
Msa1063320 AT1G32240.1 53.448 58 24 1 15 72 215 269 2.69e-11 63.2
Msa1063320 AT4G37180.1 51.724 58 25 1 13 70 210 264 8.44e-11 61.2
Msa1063320 AT4G37180.2 51.724 58 25 1 13 70 217 271 8.93e-11 61.2

Find 63 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAACCTGGAACCTTTCT+TGG 0.254138 7_2:+54968944 Msa1063320:CDS
TACGATATAGAACAGAAATT+TGG 0.266828 7_2:-54968086 None:intergenic
AGTGGATTCTGGAATCAATT+TGG 0.272685 7_2:-54967923 None:intergenic
AACGTACTTGTAGTGGATTC+TGG 0.274268 7_2:-54967934 None:intergenic
TGGAGGCTGTAAATAGGCTT+GGG 0.332347 7_2:+54965956 Msa1063320:CDS
TCTTTGTGGAGGCTGTAAAT+AGG 0.333114 7_2:+54965950 Msa1063320:CDS
TCCAAGAAAGGTTCCAGGTT+TGG 0.364366 7_2:-54968945 None:intergenic
GCACCTCAGCCTGCATTTGA+AGG 0.377972 7_2:-54968208 None:intergenic
GACCCCAAGAGTTCAGTTAT+GGG 0.387702 7_2:+54965859 None:intergenic
ACACGTCAAAAGCCACTTGC+AGG 0.391889 7_2:+54967053 Msa1063320:CDS
AGACCCCAAGAGTTCAGTTA+TGG 0.391899 7_2:+54965858 None:intergenic
GTGGAGGCTGTAAATAGGCT+TGG 0.397815 7_2:+54965955 Msa1063320:CDS
AAGAAAAGCTTGCAAGCCTT+TGG 0.401704 7_2:+54968759 Msa1063320:CDS
CTGACTCCAAGAAAGGTTCC+AGG 0.408019 7_2:-54968950 None:intergenic
GGAAAGTACCTAGACAGAAT+TGG 0.410201 7_2:+54968709 Msa1063320:CDS
TGCTGTTTGATGTTCTTCCT+CGG 0.424128 7_2:-54968842 None:intergenic
TTGGATATGTTCAGAAATAC+AGG 0.429982 7_2:+54967896 Msa1063320:intron
GGAACCCATAACTGAACTCT+TGG 0.435757 7_2:-54965863 None:intergenic
GAACCTTTCTTGGAGTCAGC+TGG 0.440714 7_2:+54968954 Msa1063320:CDS
ATTCCTTTCAGTATACCTCT+TGG 0.449845 7_2:-54966997 None:intergenic
CAGAATTCAGCAACCAAACC+TGG 0.457761 7_2:+54968932 Msa1063320:CDS
GTTGCTGAATTCTGAGGTAG+TGG 0.463218 7_2:-54968923 None:intergenic
AACTAGGCACCAAAGGTGAT+TGG 0.478600 7_2:-54968990 None:intergenic
CAGCCTCCACAAAGAGATCA+TGG 0.480797 7_2:-54965942 None:intergenic
CAGCCAGCTGACTCCAAGAA+AGG 0.496169 7_2:-54968957 None:intergenic
AGCAACCTACCAATCACCTT+TGG 0.500347 7_2:+54968981 Msa1063320:CDS
GAACCCATAACTGAACTCTT+GGG 0.503172 7_2:-54965862 None:intergenic
ACAACTCCATGATCTCTTTG+TGG 0.503279 7_2:+54965936 Msa1063320:CDS
ACTGAAAGGAATGAAGGCTA+TGG 0.503485 7_2:+54967008 Msa1063320:CDS
TACTTTGTCCAATTCTGTCT+AGG 0.510514 7_2:-54968717 None:intergenic
CTGAAAGGAATGAAGGCTAT+GGG 0.510802 7_2:+54967009 Msa1063320:CDS
CACACAAAGAACGCTTAAGA+TGG 0.520735 7_2:+54965908 Msa1063320:CDS
TCAAACAGCAAGAAAGCAAA+AGG 0.520861 7_2:+54968855 Msa1063320:CDS
AAAAGAAGTCCTTCAAATGC+AGG 0.534364 7_2:+54968199 Msa1063320:CDS
ATGGGTTCCACTCGCTCAGA+TGG 0.537642 7_2:+54965877 Msa1063320:CDS
AGGTATACTGAAAGGAATGA+AGG 0.543020 7_2:+54967002 Msa1063320:CDS
TTCAGATTCCTCAGTAAGAG+AGG 0.547975 7_2:-54968803 None:intergenic
AAAGCTTGCAAGCCTTTGGT+TGG 0.548496 7_2:+54968763 Msa1063320:CDS
GAGGCTGTAAATAGGCTTGG+GGG 0.562654 7_2:+54965958 Msa1063320:CDS
AATAAGAAACTAGGCACCAA+AGG 0.567599 7_2:-54968997 None:intergenic
GGAGGCTGTAAATAGGCTTG+GGG 0.579180 7_2:+54965957 Msa1063320:CDS
AAAACCTATAATAAGAAACT+AGG 0.579659 7_2:-54969006 None:intergenic
TCTTAAGCGTTCTTTGTGTG+TGG 0.591577 7_2:-54965905 None:intergenic
GGTTTGGTTGCTGAATTCTG+AGG 0.596881 7_2:-54968929 None:intergenic
GGTGTTGCTTTACCAACCAA+AGG 0.599644 7_2:-54968775 None:intergenic
AGTCCTTCAAATGCAGGCTG+AGG 0.600265 7_2:+54968205 Msa1063320:CDS
ACCTCTTCCCTCTCTTACTG+AGG 0.608111 7_2:+54968795 Msa1063320:CDS
GATCCTAGTTCAAAACCTGT+AGG 0.608319 7_2:-54968898 None:intergenic
ATCCTTTAAAACACAATCCG+AGG 0.610019 7_2:+54968825 Msa1063320:CDS
GATCATCTATGAAGGAGGAA+AGG 0.610342 7_2:+54968034 Msa1063320:intron
AGGCACCAAAGGTGATTGGT+AGG 0.616341 7_2:-54968986 None:intergenic
ACGCATGAGTGATAAAGTTG+AGG 0.616870 7_2:+54968235 Msa1063320:CDS
TCCTCAGTAAGAGAGGGAAG+AGG 0.625723 7_2:-54968796 None:intergenic
TCAGATTCCTCAGTAAGAGA+GGG 0.627051 7_2:-54968802 None:intergenic
ACACCAAGAGGTATACTGAA+AGG 0.630195 7_2:+54966994 Msa1063320:CDS
TGAAAGGAATGAAGGCTATG+GGG 0.636336 7_2:+54967010 Msa1063320:CDS
GAAAGGAATGAAGGCTATGG+GGG 0.636670 7_2:+54967011 Msa1063320:CDS
AACCCATAACTGAACTCTTG+GGG 0.651760 7_2:-54965861 None:intergenic
ACTCCATGATCTCTTTGTGG+AGG 0.654213 7_2:+54965939 Msa1063320:CDS
TTGTCAGGGGCAACACCAAG+AGG 0.658933 7_2:+54966982 Msa1063320:intron
GGTGGAGAAGAACCTGCAAG+TGG 0.679561 7_2:-54967065 None:intergenic
AGGCTGAAAATTGAAGCACA+AGG 0.685954 7_2:+54968688 Msa1063320:CDS
AGGCTGTAAATAGGCTTGGG+GGG 0.689265 7_2:+54965959 Msa1063320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTATTAGTTCAA+TGG + chr7_2:54966253-54966272 Msa1063320:intron 10.0%
!! TAAATAAAAAAAAAAAGTGA+AGG - chr7_2:54966823-54966842 None:intergenic 10.0%
!!! ATATAGTCTTTATAATTTTT+AGG + chr7_2:54968509-54968528 Msa1063320:intron 10.0%
!!! AAACAATATAATTATTTCTA+TGG + chr7_2:54968569-54968588 Msa1063320:intron 10.0%
!! ATTTCTTAAACAAAAAGAAA+AGG - chr7_2:54966399-54966418 None:intergenic 15.0%
!!! ATTTTATGACCAATATAAAT+GGG - chr7_2:54967089-54967108 None:intergenic 15.0%
!!! AATTTTATGACCAATATAAA+TGG - chr7_2:54967090-54967109 None:intergenic 15.0%
!! AATATGCTAATTAGTAAAAA+TGG + chr7_2:54967577-54967596 Msa1063320:intron 15.0%
!! TTACTTTATATAAGTCAATT+TGG - chr7_2:54967810-54967829 None:intergenic 15.0%
!! TTAATCAAATACTATTACTT+TGG - chr7_2:54967970-54967989 None:intergenic 15.0%
!! GTTATAATTTCAATTGAATT+TGG - chr7_2:54968005-54968024 None:intergenic 15.0%
!!! TATGATATTTTAATTTGTCA+AGG + chr7_2:54968414-54968433 Msa1063320:intron 15.0%
!!! CAAAATTTTGTATTATTTGT+TGG + chr7_2:54968647-54968666 Msa1063320:intron 15.0%
!!! AAAGTATTATTAGAACTTAG+TGG - chr7_2:54966003-54966022 None:intergenic 20.0%
!! GTTTAAGAAATGTTCATATT+TGG + chr7_2:54966408-54966427 Msa1063320:intron 20.0%
!! TACAAAAAATGACACTAATA+GGG - chr7_2:54966492-54966511 None:intergenic 20.0%
!!! ATCTACTTTAAAATGAAACT+TGG + chr7_2:54966592-54966611 Msa1063320:intron 20.0%
!! ATAAAAAAAAAAAGTGAAGG+AGG - chr7_2:54966820-54966839 None:intergenic 20.0%
!! AATTTGAATATTGTTTGTCA+GGG + chr7_2:54966968-54966987 Msa1063320:intron 20.0%
!!! TGATGGATAAAATGTTATTT+TGG + chr7_2:54967349-54967368 Msa1063320:intron 20.0%
!!! TGATTTGTAAAACTGTTTTA+GGG - chr7_2:54967477-54967496 None:intergenic 20.0%
!!! TTGATTTGTAAAACTGTTTT+AGG - chr7_2:54967478-54967497 None:intergenic 20.0%
!! TTCGTAATTCATATAAATGT+GGG - chr7_2:54967558-54967577 None:intergenic 20.0%
!! TTTCGTAATTCATATAAATG+TGG - chr7_2:54967559-54967578 None:intergenic 20.0%
!! TCTCAAAAAAACTATAATCT+CGG + chr7_2:54967646-54967665 Msa1063320:intron 20.0%
!!! TTATAAACTTGTTTGATCAA+AGG - chr7_2:54967700-54967719 None:intergenic 20.0%
!! TTTATATAAGTCAATTTGGA+TGG - chr7_2:54967806-54967825 None:intergenic 20.0%
!!! ACTTGTATTTCAATTTTCAA+GGG - chr7_2:54967845-54967864 None:intergenic 20.0%
!!! TACTTGTATTTCAATTTTCA+AGG - chr7_2:54967846-54967865 None:intergenic 20.0%
!! TTTATAGTATTTGAACCTAT+AGG + chr7_2:54968261-54968280 Msa1063320:intron 20.0%
!!! AGAATTGTAGAAAGTTTTAA+CGG + chr7_2:54968535-54968554 Msa1063320:intron 20.0%
!!! ATTTTGTATTATTTGTTGGA+AGG + chr7_2:54968651-54968670 Msa1063320:intron 20.0%
! ATCTACAAATTGCAATAAAC+AGG - chr7_2:54966035-54966054 None:intergenic 25.0%
! TTCAATGGAAATATGTCAAA+TGG + chr7_2:54966268-54966287 Msa1063320:intron 25.0%
! AAGAAATGTTCATATTTGGA+AGG + chr7_2:54966412-54966431 Msa1063320:intron 25.0%
! ACAAAAAATGACACTAATAG+GGG - chr7_2:54966491-54966510 None:intergenic 25.0%
! GTACAAAAAATGACACTAAT+AGG - chr7_2:54966493-54966512 None:intergenic 25.0%
! GATTGTTGAATAAGATTTGA+TGG + chr7_2:54966548-54966567 Msa1063320:intron 25.0%
!! TAAGTTGTATGATTTTCATC+CGG + chr7_2:54966620-54966639 Msa1063320:intron 25.0%
!! TTTTTCTTAAGTCAAGTCAA+AGG - chr7_2:54966729-54966748 None:intergenic 25.0%
! CAATTTGAATATTGTTTGTC+AGG + chr7_2:54966967-54966986 Msa1063320:intron 25.0%
! ATTTGAATATTGTTTGTCAG+GGG + chr7_2:54966969-54966988 Msa1063320:intron 25.0%
!! TGATCTTATACGATTTTTGA+TGG + chr7_2:54967332-54967351 Msa1063320:intron 25.0%
! TTTGCTAAAAAATAAGGACA+GGG - chr7_2:54967526-54967545 None:intergenic 25.0%
!!! GTTTGGTTTGCTAAAAAATA+AGG - chr7_2:54967532-54967551 None:intergenic 25.0%
! CTCAAAAAAACTATAATCTC+GGG + chr7_2:54967647-54967666 Msa1063320:intron 25.0%
!!! CAATTTTCAAGGGAATTATT+TGG - chr7_2:54967835-54967854 None:intergenic 25.0%
! TACGATATAGAACAGAAATT+TGG - chr7_2:54968089-54968108 None:intergenic 25.0%
! GTAAATGTAGAAGACATATT+TGG - chr7_2:54968473-54968492 None:intergenic 25.0%
!!! GAATTGTAGAAAGTTTTAAC+GGG + chr7_2:54968536-54968555 Msa1063320:intron 25.0%
! CCAATTCGGTTTTTAAATCA+TGG - chr7_2:54966091-54966110 None:intergenic 30.0%
CCATGATTTAAAAACCGAAT+TGG + chr7_2:54966088-54966107 Msa1063320:intron 30.0%
GATTTAAAAACCGAATTGGA+CGG + chr7_2:54966092-54966111 Msa1063320:intron 30.0%
TTATTTGAACAGTTTCATCG+TGG + chr7_2:54966155-54966174 Msa1063320:intron 30.0%
!! TACTGAAGGGTACTAAAATA+GGG + chr7_2:54966298-54966317 Msa1063320:intron 30.0%
CTTAATTGAATCGAGATAGA+TGG + chr7_2:54966445-54966464 Msa1063320:intron 30.0%
!!! ATTTTAAAGTAGATTTGCCG+AGG - chr7_2:54966586-54966605 None:intergenic 30.0%
!!! TTGTCATCAATTTTGATTGC+CGG - chr7_2:54966642-54966661 None:intergenic 30.0%
AAACTAAGCTCTTTGATACT+TGG + chr7_2:54966753-54966772 Msa1063320:intron 30.0%
AAAGTCAACGAAAAAGTCAA+CGG - chr7_2:54966929-54966948 None:intergenic 30.0%
TTATGACCAATATAAATGGG+TGG - chr7_2:54967086-54967105 None:intergenic 30.0%
AGACAAAACAAAACAACACA+AGG + chr7_2:54967268-54967287 Msa1063320:intron 30.0%
ACAACACATGACAAATTTGT+TGG + chr7_2:54967295-54967314 Msa1063320:intron 30.0%
!! TATTTTAGACAACTTGTACG+TGG + chr7_2:54967372-54967391 Msa1063320:intron 30.0%
! ATTTTAGACAACTTGTACGT+GGG + chr7_2:54967373-54967392 Msa1063320:intron 30.0%
!!! GTTTTAGGGATATGAAAAAC+TGG - chr7_2:54967463-54967482 None:intergenic 30.0%
! GTTTGCTAAAAAATAAGGAC+AGG - chr7_2:54967527-54967546 None:intergenic 30.0%
TTGGATATGTTCAGAAATAC+AGG + chr7_2:54967896-54967915 Msa1063320:intron 30.0%
CTTTAATGACTACATCCTAT+AGG - chr7_2:54968279-54968298 None:intergenic 30.0%
TAATTCATTCACGACTCAAC+TGG - chr7_2:54966123-54966142 None:intergenic 35.0%
TGGTTATGTCCAGATTCAAA+CGG + chr7_2:54966175-54966194 Msa1063320:intron 35.0%
CAGATTCAAACGGTTTAAAG+CGG + chr7_2:54966185-54966204 Msa1063320:intron 35.0%
CATTGAACATATGAGACATC+TGG - chr7_2:54966223-54966242 None:intergenic 35.0%
AAATGGTCAATCCTACTGAA+GGG + chr7_2:54966285-54966304 Msa1063320:intron 35.0%
!!! CTATTTTAGTACCCTTCAGT+AGG - chr7_2:54966299-54966318 None:intergenic 35.0%
!! CTACTGAAGGGTACTAAAAT+AGG + chr7_2:54966297-54966316 Msa1063320:intron 35.0%
ATTCCTTTCAGTATACCTCT+TGG - chr7_2:54967000-54967019 None:intergenic 35.0%
AGGTATACTGAAAGGAATGA+AGG + chr7_2:54967002-54967021 Msa1063320:CDS 35.0%
TCTTCTCCACCCATTTATAT+TGG + chr7_2:54967077-54967096 Msa1063320:intron 35.0%
TTAGGGATATGAAAAACTGG+TGG - chr7_2:54967460-54967479 None:intergenic 35.0%
GCAAAAAAACTCCAGTTGTA+CGG - chr7_2:54967504-54967523 None:intergenic 35.0%
AAAAAACTATAATCTCGGGC+TGG + chr7_2:54967651-54967670 Msa1063320:intron 35.0%
GATGACTAATATGCTCATCT+TGG + chr7_2:54967877-54967896 Msa1063320:intron 35.0%
!! AGTGGATTCTGGAATCAATT+TGG - chr7_2:54967926-54967945 None:intergenic 35.0%
AGTCAAAAACGTACTTGTAG+TGG - chr7_2:54967944-54967963 None:intergenic 35.0%
TGTTCCTTGATCATCTATGA+AGG + chr7_2:54968026-54968045 Msa1063320:intron 35.0%
AAAAGAAGTCCTTCAAATGC+AGG + chr7_2:54968199-54968218 Msa1063320:CDS 35.0%
GAACATGTATAACTTCCAAG+AGG + chr7_2:54968593-54968612 Msa1063320:intron 35.0%
TACTTTGTCCAATTCTGTCT+AGG - chr7_2:54968720-54968739 None:intergenic 35.0%
!! ATCCTTTAAAACACAATCCG+AGG + chr7_2:54968825-54968844 Msa1063320:CDS 35.0%
!! TTCCTCGGATTGTGTTTTAA+AGG - chr7_2:54968830-54968849 None:intergenic 35.0%
TCAAACAGCAAGAAAGCAAA+AGG + chr7_2:54968855-54968874 Msa1063320:CDS 35.0%
! GATGAGAATGTTTTTCCTAC+AGG + chr7_2:54968883-54968902 Msa1063320:CDS 35.0%
!!! TTTCCTACAGGTTTTGAACT+AGG + chr7_2:54968895-54968914 Msa1063320:CDS 35.0%
AATAAGAAACTAGGCACCAA+AGG - chr7_2:54969000-54969019 None:intergenic 35.0%
AACCCATAACTGAACTCTTG+GGG - chr7_2:54965864-54965883 None:intergenic 40.0%
GAACCCATAACTGAACTCTT+GGG - chr7_2:54965865-54965884 None:intergenic 40.0%
TCTTAAGCGTTCTTTGTGTG+TGG - chr7_2:54965908-54965927 None:intergenic 40.0%
CACACAAAGAACGCTTAAGA+TGG + chr7_2:54965908-54965927 Msa1063320:CDS 40.0%
ACAACTCCATGATCTCTTTG+TGG + chr7_2:54965936-54965955 Msa1063320:CDS 40.0%
TCTTTGTGGAGGCTGTAAAT+AGG + chr7_2:54965950-54965969 Msa1063320:CDS 40.0%
AGTGGCAAAAACTCACTATC+TGG - chr7_2:54965985-54966004 None:intergenic 40.0%
! CGCTTTAAACCGTTTGAATC+TGG - chr7_2:54966187-54966206 None:intergenic 40.0%
CAAATGGTCAATCCTACTGA+AGG + chr7_2:54966284-54966303 Msa1063320:intron 40.0%
GACACTAATAGGGGTTTATG+TGG - chr7_2:54966482-54966501 None:intergenic 40.0%
TGACAACGTAAATGCATGAC+TGG + chr7_2:54966656-54966675 Msa1063320:intron 40.0%
! ACACCAAGAGGTATACTGAA+AGG + chr7_2:54966994-54967013 Msa1063320:CDS 40.0%
ACTGAAAGGAATGAAGGCTA+TGG + chr7_2:54967008-54967027 Msa1063320:CDS 40.0%
CTGAAAGGAATGAAGGCTAT+GGG + chr7_2:54967009-54967028 Msa1063320:CDS 40.0%
TGAAAGGAATGAAGGCTATG+GGG + chr7_2:54967010-54967029 Msa1063320:CDS 40.0%
ATCCGAAAAACAGTCAGTAC+TGG + chr7_2:54967232-54967251 Msa1063320:intron 40.0%
!!! GTCCAGTACTGACTGTTTTT+CGG - chr7_2:54967237-54967256 None:intergenic 40.0%
! ACGTGGGACAAAAAGTTTTG+CGG + chr7_2:54967389-54967408 Msa1063320:intron 40.0%
! CAAAAAGTTTTGCGGTGGTT+TGG + chr7_2:54967397-54967416 Msa1063320:intron 40.0%
CAAATCAAACACCGTACAAC+TGG + chr7_2:54967490-54967509 Msa1063320:intron 40.0%
CATATAAATGTGGGTGCGTT+TGG - chr7_2:54967549-54967568 None:intergenic 40.0%
!! AACGTACTTGTAGTGGATTC+TGG - chr7_2:54967937-54967956 None:intergenic 40.0%
TCCTTGATCATCTATGAAGG+AGG + chr7_2:54968029-54968048 Msa1063320:intron 40.0%
TCCTCCTTCATAGATGATCA+AGG - chr7_2:54968033-54968052 None:intergenic 40.0%
GATCATCTATGAAGGAGGAA+AGG + chr7_2:54968034-54968053 Msa1063320:intron 40.0%
ACGCATGAGTGATAAAGTTG+AGG + chr7_2:54968235-54968254 Msa1063320:CDS 40.0%
!!! CCATGTCTGTTTTTTCCTCT+TGG - chr7_2:54968611-54968630 None:intergenic 40.0%
CCAAGAGGAAAAAACAGACA+TGG + chr7_2:54968608-54968627 Msa1063320:intron 40.0%
GGAAGGTTCAAAAAAGCTTG+AGG + chr7_2:54968668-54968687 Msa1063320:intron 40.0%
AGGCTGAAAATTGAAGCACA+AGG + chr7_2:54968688-54968707 Msa1063320:CDS 40.0%
!! GGAAAGTACCTAGACAGAAT+TGG + chr7_2:54968709-54968728 Msa1063320:CDS 40.0%
AAGAAAAGCTTGCAAGCCTT+TGG + chr7_2:54968759-54968778 Msa1063320:CDS 40.0%
TCAGATTCCTCAGTAAGAGA+GGG - chr7_2:54968805-54968824 None:intergenic 40.0%
TTCAGATTCCTCAGTAAGAG+AGG - chr7_2:54968806-54968825 None:intergenic 40.0%
! TGCTGTTTGATGTTCTTCCT+CGG - chr7_2:54968845-54968864 None:intergenic 40.0%
GATCCTAGTTCAAAACCTGT+AGG - chr7_2:54968901-54968920 None:intergenic 40.0%
GGAACCCATAACTGAACTCT+TGG - chr7_2:54965866-54965885 None:intergenic 45.0%
ACTCCATGATCTCTTTGTGG+AGG + chr7_2:54965939-54965958 Msa1063320:CDS 45.0%
TGGAGGCTGTAAATAGGCTT+GGG + chr7_2:54965956-54965975 Msa1063320:CDS 45.0%
ACTGGTTGAACCGTCCAATT+CGG - chr7_2:54966105-54966124 None:intergenic 45.0%
GAAAGGAATGAAGGCTATGG+GGG + chr7_2:54967011-54967030 Msa1063320:CDS 45.0%
! TGGGACAAAAAGTTTTGCGG+TGG + chr7_2:54967392-54967411 Msa1063320:intron 45.0%
AAAGCTTGCAAGCCTTTGGT+TGG + chr7_2:54968763-54968782 Msa1063320:CDS 45.0%
!! GGTGTTGCTTTACCAACCAA+AGG - chr7_2:54968778-54968797 None:intergenic 45.0%
!! GTTGCTGAATTCTGAGGTAG+TGG - chr7_2:54968926-54968945 None:intergenic 45.0%
! GGTTTGGTTGCTGAATTCTG+AGG - chr7_2:54968932-54968951 None:intergenic 45.0%
CAGAATTCAGCAACCAAACC+TGG + chr7_2:54968932-54968951 Msa1063320:CDS 45.0%
ACCAAACCTGGAACCTTTCT+TGG + chr7_2:54968944-54968963 Msa1063320:CDS 45.0%
TCCAAGAAAGGTTCCAGGTT+TGG - chr7_2:54968948-54968967 None:intergenic 45.0%
AGCAACCTACCAATCACCTT+TGG + chr7_2:54968981-54969000 Msa1063320:CDS 45.0%
AACTAGGCACCAAAGGTGAT+TGG - chr7_2:54968993-54969012 None:intergenic 45.0%
CAGCCTCCACAAAGAGATCA+TGG - chr7_2:54965945-54965964 None:intergenic 50.0%
GTGGAGGCTGTAAATAGGCT+TGG + chr7_2:54965955-54965974 Msa1063320:CDS 50.0%
GGAGGCTGTAAATAGGCTTG+GGG + chr7_2:54965957-54965976 Msa1063320:CDS 50.0%
GAGGCTGTAAATAGGCTTGG+GGG + chr7_2:54965958-54965977 Msa1063320:CDS 50.0%
AGGCTGTAAATAGGCTTGGG+GGG + chr7_2:54965959-54965978 Msa1063320:CDS 50.0%
ACACGTCAAAAGCCACTTGC+AGG + chr7_2:54967053-54967072 Msa1063320:CDS 50.0%
!!! AGTTTTGCGGTGGTTTGGTG+AGG + chr7_2:54967402-54967421 Msa1063320:intron 50.0%
!!! GTTTTGCGGTGGTTTGGTGA+GGG + chr7_2:54967403-54967422 Msa1063320:intron 50.0%
AGTCCTTCAAATGCAGGCTG+AGG + chr7_2:54968205-54968224 Msa1063320:CDS 50.0%
ACCTCTTCCCTCTCTTACTG+AGG + chr7_2:54968795-54968814 Msa1063320:CDS 50.0%
TCCTCAGTAAGAGAGGGAAG+AGG - chr7_2:54968799-54968818 None:intergenic 50.0%
CTGACTCCAAGAAAGGTTCC+AGG - chr7_2:54968953-54968972 None:intergenic 50.0%
GAACCTTTCTTGGAGTCAGC+TGG + chr7_2:54968954-54968973 Msa1063320:CDS 50.0%
AGGCACCAAAGGTGATTGGT+AGG - chr7_2:54968989-54969008 None:intergenic 50.0%
ATGGGTTCCACTCGCTCAGA+TGG + chr7_2:54965877-54965896 Msa1063320:CDS 55.0%
GATGGCTCGTGTTCTGACCT+CGG + chr7_2:54966566-54966585 Msa1063320:intron 55.0%
TTGTCAGGGGCAACACCAAG+AGG + chr7_2:54966982-54967001 Msa1063320:intron 55.0%
GGTGGAGAAGAACCTGCAAG+TGG - chr7_2:54967068-54967087 None:intergenic 55.0%
GCACCTCAGCCTGCATTTGA+AGG - chr7_2:54968211-54968230 None:intergenic 55.0%
! CAGCCAGCTGACTCCAAGAA+AGG - chr7_2:54968960-54968979 None:intergenic 55.0%
GGCAGAGCCATCTGAGCGAG+TGG - chr7_2:54965887-54965906 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 54965860 54969020 54965860 ID=Msa1063320;Name=Msa1063320
chr7_2 mRNA 54965860 54969020 54965860 ID=Msa1063320-mRNA-1;Parent=Msa1063320;Name=Msa1063320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=17|0|0|1|1|0.83|6|0|238
chr7_2 exon 54965860 54965988 54965860 ID=Msa1063320-mRNA-1:exon:10166;Parent=Msa1063320-mRNA-1
chr7_2 exon 54966989 54967074 54966989 ID=Msa1063320-mRNA-1:exon:10167;Parent=Msa1063320-mRNA-1
chr7_2 exon 54967910 54967949 54967910 ID=Msa1063320-mRNA-1:exon:10168;Parent=Msa1063320-mRNA-1
chr7_2 exon 54968048 54968105 54968048 ID=Msa1063320-mRNA-1:exon:10169;Parent=Msa1063320-mRNA-1
chr7_2 exon 54968187 54968256 54968187 ID=Msa1063320-mRNA-1:exon:10170;Parent=Msa1063320-mRNA-1
chr7_2 exon 54968673 54969020 54968673 ID=Msa1063320-mRNA-1:exon:10171;Parent=Msa1063320-mRNA-1
chr7_2 five_prime_UTR 54965860 54965876 54965860 ID=Msa1063320-mRNA-1:five_prime_utr;Parent=Msa1063320-mRNA-1
chr7_2 CDS 54965877 54965988 54965877 ID=Msa1063320-mRNA-1:cds;Parent=Msa1063320-mRNA-1
chr7_2 CDS 54966989 54967074 54966989 ID=Msa1063320-mRNA-1:cds;Parent=Msa1063320-mRNA-1
chr7_2 CDS 54967910 54967949 54967910 ID=Msa1063320-mRNA-1:cds;Parent=Msa1063320-mRNA-1
chr7_2 CDS 54968048 54968105 54968048 ID=Msa1063320-mRNA-1:cds;Parent=Msa1063320-mRNA-1
chr7_2 CDS 54968187 54968256 54968187 ID=Msa1063320-mRNA-1:cds;Parent=Msa1063320-mRNA-1
chr7_2 CDS 54968673 54969020 54968673 ID=Msa1063320-mRNA-1:cds;Parent=Msa1063320-mRNA-1
Gene Sequence

>Msa1063320

ATGGGTTCCACTCGCTCAGATGGCTCTGCCACACACAAAGAACGCTTAAGATGGACACAACAACTCCATGATCTCTTTGTGGAGGCTGTAAATAGGCTTGGGGGGCCAGATAGGGCAACACCAAGAGGTATACTGAAAGGAATGAAGGCTATGGGGGTTTCAGAATTGAAAATATTACACGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAATCCACTACAAGAGGAAAGGTTGAGAAGAGAAGCATATCAGATATACTGCCAAATTTCTGTTCTATATCTGCTCTTCAGCTAAAAGAAGTCCTTCAAATGCAGGCTGAGGTGCAAAAACGCATGAGTGATAAAGTTGAGGTTCAAAAAAGCTTGAGGCTGAAAATTGAAGCACAAGGAAAGTACCTAGACAGAATTGGACAAAGTAATCAAATCAGAACTATTACAAGAAAAGCTTGCAAGCCTTTGGTTGGTAAAGCAACACCTCTTCCCTCTCTTACTGAGGAATCTGAATCCTTTAAAACACAATCCGAGGAAGAACATCAAACAGCAAGAAAGCAAAAGGTCACAGATGAGAATGTTTTTCCTACAGGTTTTGAACTAGGATCATCCACTACCTCAGAATTCAGCAACCAAACCTGGAACCTTTCTTGGAGTCAGCTGGCTGAAGCAACCTACCAATCACCTTTGGTGCCTAGTTTCTTATTA

Protein sequence

>Msa1063320

MGSTRSDGSATHKERLRWTQQLHDLFVEAVNRLGGPDRATPRGILKGMKAMGVSELKILHVKSHLQKYRISKLIPESTTRGKVEKRSISDILPNFCSISALQLKEVLQMQAEVQKRMSDKVEVQKSLRLKIEAQGKYLDRIGQSNQIRTITRKACKPLVGKATPLPSLTEESESFKTQSEEEHQTARKQKVTDENVFPTGFELGSSTTSEFSNQTWNLSWSQLAEATYQSPLVPSFLL