AlfalfaGEDB | Msa1063350

M. sativa cultivar zhongmu-4 / Msa1063350

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063350	XP_013449155.1	99.057	530	5	0	1	530	1	530	0.0	1093

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063350	sp\|Q8W4I7\|CDPKD_ARATH	86.226	530	71	2	1	530	1	528	0.0	961

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063350	A0A072U0I0	99.057	530	5	0	1	530	1	530	0.0	1093

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1063350	MtrunA17_Chr7g0242561	99.057	530	5	0	1	530	1	530	1093
Msa1063350	MtrunA17_Chr4g0059951	68.373	547	156	3	1	530	1	547	772
Msa1063350	MtrunA17_Chr7g0257751	67.293	532	172	1	1	530	1	532	754
Msa1063350	MtrunA17_Chr1g0173541	66.038	530	176	2	1	530	1	526	734
Msa1063350	MtrunA17_Chr4g0033371	59.414	478	193	1	51	528	67	543	621
Msa1063350	MtrunA17_Chr0c02g0489761	54.876	523	205	7	1	497	1	518	570
Msa1063350	MtrunA17_Chr5g0441691	53.996	513	215	4	1	497	1	508	567
Msa1063350	MtrunA17_Chr1g0176751	57.634	465	190	2	51	510	119	581	556
Msa1063350	MtrunA17_Chr1g0170281	57.522	452	190	1	47	498	109	558	547
Msa1063350	MtrunA17_Chr8g0387671	59.276	442	179	1	56	497	66	506	545

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1063350	AT3G51850.1	86.226	530	71	2	1	530	1	528	961
Msa1063350	AT3G51850.2	85.655	481	67	2	1	481	1	479	865
Msa1063350	AT1G74740.1	67.978	534	160	3	1	527	1	530	743
Msa1063350	AT5G12480.1	65.794	535	177	4	1	530	1	534	739
Msa1063350	AT5G19450.2	65.977	532	179	2	1	530	1	532	733
Msa1063350	AT5G19450.1	65.977	532	179	2	1	530	1	532	733
Msa1063350	AT3G51850.3	84.819	415	61	2	1	415	1	413	733
Msa1063350	AT1G18890.1	67.416	534	167	4	1	527	1	534	723
Msa1063350	AT3G57530.1	62.894	539	188	4	1	530	1	536	715
Msa1063350	AT2G41860.1	62.167	526	197	2	1	526	1	524	687

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Find 172 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGTTCTTTAAACTT+AGG	0.374121	7_2:-55082143	Msa1063350:CDS
AAAGCCGTCGTGTTATTTAT+TGG	0.259621	7_2:-55081638	Msa1063350:three_prime_UTR
AAATGACGAGCATCTTCACA+AGG	0.673979	7_2:-55082495	Msa1063350:CDS
AACAAAGGGTGTGTATATTT+CGG	0.389756	7_2:+55081955	None:intergenic
AACATCATCAACATCAACGG+CGG	0.724157	7_2:+55087623	None:intergenic
AACTGGAACGGATTGGAGAA+AGG	0.523785	7_2:-55082219	Msa1063350:CDS
AAGATGGATACTGATAATGA+TGG	0.614777	7_2:-55082940	Msa1063350:CDS
AAGGCATTCCGTAGCTCTTC+TGG	0.378333	7_2:+55082431	None:intergenic
AAGGCTCCAAATGTTCCTCT+TGG	0.531788	7_2:-55083168	Msa1063350:CDS
AAGTCCATATTATATGGCTC+CGG	0.567447	7_2:-55084341	Msa1063350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGCTGTTCATCTTGTTA+TGG	-	chr7_2:55082264-55082283	Msa1063350:intron	30.0%
TTGGGTCTAGTATATTTGAT+AGG	-	chr7_2:55082686-55082705	Msa1063350:intron	30.0%
GCTTAATCTAACACAAACAA+AGG	+	chr7_2:55082889-55082908	None:intergenic	30.0%
TTTATGCTTCATTTCGCTTA+AGG	+	chr7_2:55082968-55082987	None:intergenic	30.0%
GGATATATTAAAGTTGTTGG+TGG	-	chr7_2:55083140-55083159	Msa1063350:CDS	30.0%
AGATATATTTACACATCTGG+AGG	-	chr7_2:55083477-55083496	Msa1063350:intron	30.0%
TTTAGTCTGTTAAGTGTCAA+AGG	+	chr7_2:55083734-55083753	None:intergenic	30.0%
GTGATGTAATTAGATGTGTT+AGG	-	chr7_2:55083848-55083867	Msa1063350:intron	30.0%
TACAACATCAACTTATAAGG+GGG	+	chr7_2:55084077-55084096	None:intergenic	30.0%
CCATACAACATCAACTTATA+AGG	+	chr7_2:55084080-55084099	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	55081626	55088183	55081626	ID=Msa1063350;Name=Msa1063350
chr7_2	mRNA	55081626	55088183	55081626	ID=Msa1063350-mRNA-1;Parent=Msa1063350;Name=Msa1063350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=258\|1\|1\|1\|0.71\|0.75\|8\|326\|530
chr7_2	exon	55081626	55081746	55081626	ID=Msa1063350-mRNA-1:exon:10234;Parent=Msa1063350-mRNA-1
chr7_2	exon	55081928	55082282	55081928	ID=Msa1063350-mRNA-1:exon:10233;Parent=Msa1063350-mRNA-1
chr7_2	exon	55082361	55082591	55082361	ID=Msa1063350-mRNA-1:exon:10232;Parent=Msa1063350-mRNA-1
chr7_2	exon	55082852	55083019	55082852	ID=Msa1063350-mRNA-1:exon:10231;Parent=Msa1063350-mRNA-1
chr7_2	exon	55083101	55083216	55083101	ID=Msa1063350-mRNA-1:exon:10230;Parent=Msa1063350-mRNA-1
chr7_2	exon	55083653	55083805	55083653	ID=Msa1063350-mRNA-1:exon:10229;Parent=Msa1063350-mRNA-1
chr7_2	exon	55084245	55084388	55084245	ID=Msa1063350-mRNA-1:exon:10228;Parent=Msa1063350-mRNA-1
chr7_2	exon	55087295	55088183	55087295	ID=Msa1063350-mRNA-1:exon:10227;Parent=Msa1063350-mRNA-1
chr7_2	five_prime_UTR	55087926	55088183	55087926	ID=Msa1063350-mRNA-1:five_prime_utr;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55087295	55087925	55087295	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55084245	55084388	55084245	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55083653	55083805	55083653	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55083101	55083216	55083101	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55082852	55083019	55082852	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55082361	55082591	55082361	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	CDS	55082133	55082282	55082133	ID=Msa1063350-mRNA-1:cds;Parent=Msa1063350-mRNA-1
chr7_2	three_prime_UTR	55081928	55082132	55081928	ID=Msa1063350-mRNA-1:three_prime_utr;Parent=Msa1063350-mRNA-1
chr7_2	three_prime_UTR	55081626	55081746	55081626	ID=Msa1063350-mRNA-1:three_prime_utr;Parent=Msa1063350-mRNA-1

Gene Sequence

>Msa1063350

ATGGGTAACTGCTGCAGATCTCCGGCCGCCGTCGCACGCGAAGATGTCAAATCCTCTTTCTCCAACCACGACCACCCTAAACGAACTGAAACCACCGCCAACAAAAAAACCCCACCGGTCACCGTCCTTGCTGCCACCAAAACCTCCGACAACATGGAAGACCGTTACCTCATCGACCGTGAACTCGGCCGCGGCGAATTCGGTGTAACCTATCTCTGTATCGACCGTGACACTCGCGAGCTACTCGCCTGCAAAAGCATCTCCAAACGGAAGCTACGAACCGCCGTTGATGTTGATGATGTTCGCCGTGAAGTTGCTATCATGCGCCATTTGCCTAAGAGTTCGAGTATTGTGACTCTTCGTGAAGCGTGTGAGGATGATAATGCTGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGGGAGCTTTTTGATCGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCGGCTGCCGCGGTTGCGAGGACGATTGTGGAGGTTGTGCAGCTTTGTCATAAGCATGGAGTGATTCATCGCGATCTTAAGCCGGAGAATTTCTTGTTTGCGAATAAGAAGGAGAATTCGCCGCTTAAAGCTATTGATTTCGGGTTGTCTATTTTCTTTAAGCCAGGCGAGAAATTTTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCGGAGGTGCTCAAGCGGAACTATGGACCTGAAATAGATATATGGAGTGCAGGAGTGATACTCTATATCTTATTGTGCGGTGTTCCCCCGTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAAGCTATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGCATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTGGAACCAGACCCTAAGCTTCGATTAACGGCCAAACAAGTGCTTGAGCATCCTTGGCTCCAAAATGCTAAGAAGGCTCCAAATGTTCCTCTTGGTGATGTTGTCAAGTCAAGGCTTAAGCAATTCTCGATGATGAATAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGAGATGTTTAAGAAGATGGATACTGATAATGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTCCAAAAGCATCAGTCTCAACTTGCTGAGTCTGAAGTTCAGATGTTTATTGAAGCTGTAGATAATAATGGTAAGGGAACACTAGATTATGGAGAATTTGTTGCCATTTCCCTTCATTTAAAAAGGATGGCAAATGACGAGCATCTTCACAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATATATTGAACCAGAAGAGCTACGGAATGCCTTGATGGAAGATGGAACTGATGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACGGACAAGGATGGAAAAATCAGCTATGATGAATTTGTGGCTATGATGAAAACTGGAACGGATTGGAGAAAGGCTTCTCGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTAATGAAAGATGGTTCTTTAAACTTAGGAAATGAGTAG

Protein sequence

>Msa1063350

MGNCCRSPAAVAREDVKSSFSNHDHPKRTETTANKKTPPVTVLAATKTSDNMEDRYLIDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVDDVRREVAIMRHLPKSSSIVTLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKEMFKKMDTDNDGIVSIEELKAGFQKHQSQLAESEVQMFIEAVDNNGKGTLDYGEFVAISLHLKRMANDEHLHKAFSYFDKDGNGYIEPEELRNALMEDGTDDCTDVANDIFQEVDTDKDGKISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE*