AlfalfaGEDB | Msa1063650

M. sativa cultivar zhongmu-4 / Msa1063650

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063650	XP_003623338.1	91.925	483	34	3	1	482	53	531	0.0	883

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063650	sp\|Q2PEG7\|NSP2_LOTJA	26.332	319	191	13	165	458	113	412	2.69e-12	72.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063650	G7KSD5	91.925	483	34	3	1	482	53	531	0.0	883

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1063650	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1063650	MtrunA17_Chr7g0243151	91.925	483	34	3	1	482	53	531	0.0	883
Msa1063650	MtrunA17_Chr3g0114841	24.465	327	195	13	165	459	115	421	1.67e-11	66.2

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 77 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATGAACGAAACGGG+TGG	0.646793	7_2:-55675190	Msa1063650:CDS
AAAATTCTCCCTGTGATGCA+TGG	0.552151	7_2:-55675843	Msa1063650:CDS
AAATTGACATAATTGATTAT+TGG	0.190898	7_2:-55675426	Msa1063650:CDS
AACTCCCTTCACTTTCTTCT+TGG	0.260798	7_2:+55675971	None:intergenic
AAGAGAGTCACCAATTGGAG+TGG	0.663623	7_2:+55675633	None:intergenic
AATACCAAGAAGAAAGTGAA+GGG	0.608570	7_2:-55675975	Msa1063650:CDS
AATCATGGAGAATACCTCAA+AGG	0.661739	7_2:-55675574	Msa1063650:CDS
AATGATAGGTCTTCCACATA+TGG	0.384690	7_2:-55675140	Msa1063650:CDS
ACCAATTTGTGGACTCAAAA+TGG	0.208342	7_2:+55676014	None:intergenic
AGGTCTTCCACATATGGGAA+TGG	0.588806	7_2:-55675134	Msa1063650:CDS

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAACATAGTCATCATCAATA+TGG	+	chr7_2:55674810-55674829	None:intergenic	30.0%
GATATGATCATTGGTGAATA+TGG	+	chr7_2:55674926-55674945	None:intergenic	30.0%
TGGAAATTGGATATGATCAT+TGG	+	chr7_2:55674935-55674954	None:intergenic	30.0%
GATTCTAATTCCATTAGAGA+TGG	+	chr7_2:55674982-55675001	None:intergenic	30.0%
AATACCAAGAAGAAAGTGAA+GGG	-	chr7_2:55675049-55675068	Msa1063650:CDS	30.0%
TAAAGGGAAATCATCATAAG+TGG	+	chr7_2:55675160-55675179	None:intergenic	30.0%
TACTTTGCCACAAGAAAATA+TGG	-	chr7_2:55675254-55675273	Msa1063650:CDS	30.0%
TTCATCACAATCTTCTAACA+TGG	+	chr7_2:55675580-55675599	None:intergenic	30.0%
TATGAGTATGCTAAATCATG+TGG	-	chr7_2:55675759-55675778	Msa1063650:CDS	30.0%
ATAGTTCTTGATCAAATCCT+CGG	+	chr7_2:55675958-55675977	None:intergenic	30.0%

Showing 1 to 10 of 222 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	55674799	55676247	55674799	ID=Msa1063650;Name=Msa1063650
chr7_2	mRNA	55674799	55676247	55674799	ID=Msa1063650-mRNA-1;Parent=Msa1063650;Name=Msa1063650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|482
chr7_2	exon	55674799	55676247	55674799	ID=Msa1063650-mRNA-1:exon:10459;Parent=Msa1063650-mRNA-1
chr7_2	CDS	55674799	55676247	55674799	ID=Msa1063650-mRNA-1:cds;Parent=Msa1063650-mRNA-1

Gene Sequence

>Msa1063650

ATGGATGGCCATATTGATGATGACTATGTTCCATATGGCATCATCATGGATGATCATGTTGAATATGATTATGAATTCAATACTCTATTAAGCACTTCAGAAAATAGTACTCTCTCTGAAATCTCCATATTCACCAATGATCATATCCAATTTCCAATTGATGAAGAAACCTTGGAACTTCCATCTCTAATGGAATTAGAATCTTCTGATTCCATTTTGAGTCCACAAATTGGTAATATTCAAGAACATGAATACCAAGAAGAAAGTGAAGGGAGTTTCCCTTCACAAAATTTTCCACATGTCCTCGAAGGGTATAGTTCAAATCCCCTCGGAGACAGTTGTAAAATGGCCGCCAGTGCCACTTATGATGATTTCCCTTTACAAAATTCTCCCTGTGATGCATGGAGTCCAACACTTTCAATGAAATCAGATTTTTCATCAATTCAACAATCACTTACTTTGCCACAAGAAAATATGGAAATTGAAAACCAAGTGAGTCTTCCACACTTGATGGAAGCACATGGTGAAGCCTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTAATTTGAAGTGTATAAGCCAAAAAGTTACCACTCCAATTGGTGACTCTCTTGAGACACTTGCATTTTATTTGGCTCAAGAAGTGACAAATCATGGAGAATACCTCAAAGGCGAGGCATACAAGAATTTTCAGGCTGCTTTTAAGGTATTTTATCAAGGGAATTTGGTTGGAAAAATGGCTCATTTTTCGGCTATTTCATCAATTCTAGAAGCTGCCATGTTAGAAGATTGTGATGAAATTGACATAATTGATTATTGGTTTGGAAATGGTGTTCAATGGCCTTTTCTCTTGGAGGCTGTTTCAAAAATGAACAAAAGATTGAAATTGACATCAATTAAATGGAGTGATGAAAATTCTGAATGTGTTTGGAATTTTGAGGATGCCAAAAGGGAACTTTATGAGTATGCTAAATCATGTGGTTTGAAATTGAAGGTAGAGGAAAAGGAATTGGATGAATTGATTAGTGAGATCAAAATAATGAACGAAACGGGTGGAAAGAAAGAGTTTTTGGCTTTCAAGTTAATGATAGGTCTTCCACATATGGGAATGGTTAGAAGTAGAAGAAAAAATGCTTATGAGTTTTTGAAGGTAGCCGAGGATTTGATCAAGAACTATGGTATCAAGGGAATTATTACTTTTGGTGATGGTGATGCATTTGAGAAACTAAAAAATAGTTTGAATTTCATGTCATTTTTTGAAGGGAATTTGGTCCATTATAAAGCTTTGTTGCAATCAATTGAGTCACAATTTTCAACAAAATTCTCAGAAGCAAGAATTGCATGTGAAGTGTTGTTTGTGGCACCTTGTATATCTTCTCTTGATTGGTTACAAACATGGGAAGAGATGAAAAGTGATGGCTATCATCATAAAGGTGAGATTAGCTAA

Protein sequence

>Msa1063650

MDGHIDDDYVPYGIIMDDHVEYDYEFNTLLSTSENSTLSEISIFTNDHIQFPIDEETLELPSLMELESSDSILSPQIGNIQEHEYQEESEGSFPSQNFPHVLEGYSSNPLGDSCKMAASATYDDFPLQNSPCDAWSPTLSMKSDFSSIQQSLTLPQENMEIENQVSLPHLMEAHGEALEKGQKALAEVNLKCISQKVTTPIGDSLETLAFYLAQEVTNHGEYLKGEAYKNFQAAFKVFYQGNLVGKMAHFSAISSILEAAMLEDCDEIDIIDYWFGNGVQWPFLLEAVSKMNKRLKLTSIKWSDENSECVWNFEDAKRELYEYAKSCGLKLKVEEKELDELISEIKIMNETGGKKEFLAFKLMIGLPHMGMVRSRRKNAYEFLKVAEDLIKNYGIKGIITFGDGDAFEKLKNSLNFMSFFEGNLVHYKALLQSIESQFSTKFSEARIACEVLFVAPCISSLDWLQTWEEMKSDGYHHKGEIS*