Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063650 | XP_003623338.1 | 91.925 | 483 | 34 | 3 | 1 | 482 | 53 | 531 | 0.0 | 883 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063650 | sp|Q2PEG7|NSP2_LOTJA | 26.332 | 319 | 191 | 13 | 165 | 458 | 113 | 412 | 2.69e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063650 | G7KSD5 | 91.925 | 483 | 34 | 3 | 1 | 482 | 53 | 531 | 0.0 | 883 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1063650 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063650 | MtrunA17_Chr7g0243151 | 91.925 | 483 | 34 | 3 | 1 | 482 | 53 | 531 | 0.0 | 883 |
| Msa1063650 | MtrunA17_Chr3g0114841 | 24.465 | 327 | 195 | 13 | 165 | 459 | 115 | 421 | 1.67e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGACATAATTGATTAT+TGG | 0.190898 | 7_2:-55675426 | Msa1063650:CDS |
| ACCAATTTGTGGACTCAAAA+TGG | 0.208342 | 7_2:+55676014 | None:intergenic |
| TGAAATTGACATCAATTAAA+TGG | 0.209268 | 7_2:-55675342 | Msa1063650:CDS |
| TTTCTTCATCAATTGGAAAT+TGG | 0.210829 | 7_2:+55676079 | None:intergenic |
| TACTTTGCCACAAGAAAATA+TGG | 0.244532 | 7_2:-55675770 | Msa1063650:CDS |
| AACTCCCTTCACTTTCTTCT+TGG | 0.260798 | 7_2:+55675971 | None:intergenic |
| ATTGCAACAAAGCTTTATAA+TGG | 0.275966 | 7_2:+55674951 | None:intergenic |
| ATCAAGGGAATTATTACTTT+TGG | 0.281766 | 7_2:-55675043 | Msa1063650:CDS |
| GACATAATTGATTATTGGTT+TGG | 0.287363 | 7_2:-55675421 | Msa1063650:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7_2:-55674859 | Msa1063650:CDS |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7_2:+55676101 | None:intergenic |
| TCCAAGGTTTCTTCATCAAT+TGG | 0.335882 | 7_2:+55676072 | None:intergenic |
| ATACTCATAAAGTTCCCTTT+TGG | 0.352223 | 7_2:+55675279 | None:intergenic |
| CTTGGAACTTCCATCTCTAA+TGG | 0.352756 | 7_2:-55676055 | Msa1063650:CDS |
| ATGAAAATTCTGAATGTGTT+TGG | 0.359147 | 7_2:-55675315 | Msa1063650:CDS |
| GAACATAGTCATCATCAATA+TGG | 0.362230 | 7_2:+55676217 | None:intergenic |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.374060 | 7_2:+55675560 | None:intergenic |
| AATGATAGGTCTTCCACATA+TGG | 0.384690 | 7_2:-55675140 | Msa1063650:CDS |
| CCTCGGAGACAGTTGTAAAA+TGG | 0.387068 | 7_2:-55675899 | Msa1063650:CDS |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7_2:-55675734 | Msa1063650:CDS |
| GAAATTGAAGGTAGAGGAAA+AGG | 0.406350 | 7_2:-55675239 | Msa1063650:CDS |
| TCTTGAATATTACCAATTTG+TGG | 0.407532 | 7_2:+55676003 | None:intergenic |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7_2:-55674847 | Msa1063650:CDS |
| TCTGATTTCATTGAAAGTGT+TGG | 0.420317 | 7_2:+55675817 | None:intergenic |
| TTGGCTTTCAAGTTAATGAT+AGG | 0.426926 | 7_2:-55675154 | Msa1063650:CDS |
| GAAGGTAGAGGAAAAGGAAT+TGG | 0.435590 | 7_2:-55675233 | Msa1063650:CDS |
| ATTGATTATTGGTTTGGAAA+TGG | 0.443553 | 7_2:-55675415 | Msa1063650:CDS |
| TCCAATTGATGAAGAAACCT+TGG | 0.445970 | 7_2:-55676073 | Msa1063650:CDS |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7_2:+55676092 | None:intergenic |
| GATCAAGAACTATGGTATCA+AGG | 0.453234 | 7_2:-55675059 | Msa1063650:CDS |
| AGTGATGGCTATCATCATAA+AGG | 0.457503 | 7_2:-55674812 | Msa1063650:CDS |
| GAGGATTTGATCAAGAACTA+TGG | 0.460555 | 7_2:-55675067 | Msa1063650:CDS |
| ATCAAAATAATGAACGAAAC+GGG | 0.464863 | 7_2:-55675193 | Msa1063650:CDS |
| GTCTCAAGAGAGTCACCAAT+TGG | 0.467270 | 7_2:+55675628 | None:intergenic |
| GAAACAGCCTCCAAGAGAAA+AGG | 0.477495 | 7_2:+55675382 | None:intergenic |
| TGCATGTGAAGTGTTGTTTG+TGG | 0.478913 | 7_2:-55674885 | Msa1063650:CDS |
| TGTTGGACTCCATGCATCAC+AGG | 0.496115 | 7_2:+55675834 | None:intergenic |
| GCTCAAGAAGTGACAAATCA+TGG | 0.497130 | 7_2:-55675589 | Msa1063650:CDS |
| GATCAAAATAATGAACGAAA+CGG | 0.497362 | 7_2:-55675194 | Msa1063650:CDS |
| CTTCTAACCATTCCCATATG+TGG | 0.507260 | 7_2:+55675127 | None:intergenic |
| TCATCCATGATGATGCCATA+TGG | 0.509020 | 7_2:+55676195 | None:intergenic |
| CATTAGAGATGGAAGTTCCA+AGG | 0.509956 | 7_2:+55676056 | None:intergenic |
| ATCATGTGGTTTGAAATTGA+AGG | 0.512511 | 7_2:-55675251 | Msa1063650:CDS |
| GATGATGACTATGTTCCATA+TGG | 0.514828 | 7_2:-55676210 | Msa1063650:CDS |
| CATGGTGAAGCCTTGGAGAA+AGG | 0.516575 | 7_2:-55675706 | Msa1063650:CDS |
| GGAAGCACATGGTGAAGCCT+TGG | 0.523810 | 7_2:-55675713 | Msa1063650:CDS |
| TGGTTTGAAATTGAAGGTAG+AGG | 0.525487 | 7_2:-55675245 | Msa1063650:CDS |
| TAAAGGGAAATCATCATAAG+TGG | 0.526885 | 7_2:+55675867 | None:intergenic |
| GGTTTGGAAATGGTGTTCAA+TGG | 0.527955 | 7_2:-55675405 | Msa1063650:CDS |
| ATGATAGGTCTTCCACATAT+GGG | 0.529724 | 7_2:-55675139 | Msa1063650:CDS |
| ATCAAGAACTATGGTATCAA+GGG | 0.539287 | 7_2:-55675058 | Msa1063650:CDS |
| GAAATCATCATAAGTGGCAC+TGG | 0.544984 | 7_2:+55675873 | None:intergenic |
| GATTCTAATTCCATTAGAGA+TGG | 0.545913 | 7_2:+55676045 | None:intergenic |
| AAAATTCTCCCTGTGATGCA+TGG | 0.552151 | 7_2:-55675843 | Msa1063650:CDS |
| TATGAGTATGCTAAATCATG+TGG | 0.552563 | 7_2:-55675265 | Msa1063650:CDS |
| GATTTGAACTATACCCTTCG+AGG | 0.557019 | 7_2:+55675923 | None:intergenic |
| TGTTCCATATGGCATCATCA+TGG | 0.566239 | 7_2:-55676199 | Msa1063650:CDS |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7_2:-55674846 | Msa1063650:CDS |
| ATAGTTCTTGATCAAATCCT+CGG | 0.572634 | 7_2:+55675069 | None:intergenic |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7_2:+55675737 | None:intergenic |
| CTATACCCTTCGAGGACATG+TGG | 0.581600 | 7_2:+55675931 | None:intergenic |
| CCATATGGCATCATCATGGA+TGG | 0.582147 | 7_2:-55676240 | None:intergenic |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7_2:+55674860 | None:intergenic |
| AGGTCTTCCACATATGGGAA+TGG | 0.588806 | 7_2:-55675134 | Msa1063650:CDS |
| GAATACCAAGAAGAAAGTGA+AGG | 0.607663 | 7_2:-55675976 | Msa1063650:CDS |
| ATCATCATAAGTGGCACTGG+CGG | 0.608048 | 7_2:+55675876 | None:intergenic |
| TGGGAAGAGATGAAAAGTGA+TGG | 0.608114 | 7_2:-55674827 | Msa1063650:CDS |
| AATACCAAGAAGAAAGTGAA+GGG | 0.608570 | 7_2:-55675975 | Msa1063650:CDS |
| TTCATCACAATCTTCTAACA+TGG | 0.616759 | 7_2:+55675447 | None:intergenic |
| CCATGTGCTTCCATCAAGTG+TGG | 0.618160 | 7_2:+55675724 | None:intergenic |
| GTTGGACTCCATGCATCACA+GGG | 0.638138 | 7_2:+55675835 | None:intergenic |
| AAAATAATGAACGAAACGGG+TGG | 0.646793 | 7_2:-55675190 | Msa1063650:CDS |
| GGGTATAGTTCAAATCCCCT+CGG | 0.648026 | 7_2:-55675916 | Msa1063650:CDS |
| CCACACTTGATGGAAGCACA+TGG | 0.654957 | 7_2:-55675724 | Msa1063650:CDS |
| AATCATGGAGAATACCTCAA+AGG | 0.661739 | 7_2:-55675574 | Msa1063650:CDS |
| AAGAGAGTCACCAATTGGAG+TGG | 0.663623 | 7_2:+55675633 | None:intergenic |
| TGGAGAATACCTCAAAGGCG+AGG | 0.686092 | 7_2:-55675569 | Msa1063650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGACATAATTGATTAT+TGG | - | chr7_2:55675598-55675617 | Msa1063650:CDS | 15.0% |
| !! | AAATTGACATAATTGATTAT+TGG | - | chr7_2:55675598-55675617 | Msa1063650:CDS | 15.0% |
| !!! | CTTTTAAGGTATTTTATCAA+GGG | - | chr7_2:55675499-55675518 | Msa1063650:CDS | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7_2:55675682-55675701 | Msa1063650:CDS | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | - | chr7_2:55676041-55676060 | Msa1063650:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | - | chr7_2:55676042-55676061 | Msa1063650:CDS | 20.0% |
| !!! | CTTTTAAGGTATTTTATCAA+GGG | - | chr7_2:55675499-55675518 | Msa1063650:CDS | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7_2:55675682-55675701 | Msa1063650:CDS | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | - | chr7_2:55676041-55676060 | Msa1063650:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | - | chr7_2:55676042-55676061 | Msa1063650:CDS | 20.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7_2:55674948-55674967 | None:intergenic | 25.0% |
| ! | TCTTGAATATTACCAATTTG+TGG | + | chr7_2:55675024-55675043 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | + | chr7_2:55675264-55675283 | None:intergenic | 25.0% |
| !!! | GCTTTTAAGGTATTTTATCA+AGG | - | chr7_2:55675498-55675517 | Msa1063650:CDS | 25.0% |
| !! | GACATAATTGATTATTGGTT+TGG | - | chr7_2:55675603-55675622 | Msa1063650:CDS | 25.0% |
| !!! | ATTGATTATTGGTTTGGAAA+TGG | - | chr7_2:55675609-55675628 | Msa1063650:CDS | 25.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | - | chr7_2:55675709-55675728 | Msa1063650:CDS | 25.0% |
| ! | GATCAAAATAATGAACGAAA+CGG | - | chr7_2:55675830-55675849 | Msa1063650:CDS | 25.0% |
| ! | ATCAAAATAATGAACGAAAC+GGG | - | chr7_2:55675831-55675850 | Msa1063650:CDS | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | - | chr7_2:55675929-55675948 | Msa1063650:CDS | 25.0% |
| !! | ATCAAGGGAATTATTACTTT+TGG | - | chr7_2:55675981-55676000 | Msa1063650:CDS | 25.0% |
| !! | ATTGCAACAAAGCTTTATAA+TGG | + | chr7_2:55676076-55676095 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7_2:55674948-55674967 | None:intergenic | 25.0% |
| ! | TCTTGAATATTACCAATTTG+TGG | + | chr7_2:55675024-55675043 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+TGG | + | chr7_2:55675264-55675283 | None:intergenic | 25.0% |
| !!! | GCTTTTAAGGTATTTTATCA+AGG | - | chr7_2:55675498-55675517 | Msa1063650:CDS | 25.0% |
| !! | GACATAATTGATTATTGGTT+TGG | - | chr7_2:55675603-55675622 | Msa1063650:CDS | 25.0% |
| !!! | ATTGATTATTGGTTTGGAAA+TGG | - | chr7_2:55675609-55675628 | Msa1063650:CDS | 25.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | - | chr7_2:55675709-55675728 | Msa1063650:CDS | 25.0% |
| ! | GATCAAAATAATGAACGAAA+CGG | - | chr7_2:55675830-55675849 | Msa1063650:CDS | 25.0% |
| ! | ATCAAAATAATGAACGAAAC+GGG | - | chr7_2:55675831-55675850 | Msa1063650:CDS | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | - | chr7_2:55675929-55675948 | Msa1063650:CDS | 25.0% |
| !! | ATCAAGGGAATTATTACTTT+TGG | - | chr7_2:55675981-55676000 | Msa1063650:CDS | 25.0% |
| !! | ATTGCAACAAAGCTTTATAA+TGG | + | chr7_2:55676076-55676095 | None:intergenic | 25.0% |
| GAACATAGTCATCATCAATA+TGG | + | chr7_2:55674810-55674829 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7_2:55674926-55674945 | None:intergenic | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7_2:55674935-55674954 | None:intergenic | 30.0% | |
| GATTCTAATTCCATTAGAGA+TGG | + | chr7_2:55674982-55675001 | None:intergenic | 30.0% | |
| AATACCAAGAAGAAAGTGAA+GGG | - | chr7_2:55675049-55675068 | Msa1063650:CDS | 30.0% | |
| ! | CATGTGGAAAATTTTGTGAA+GGG | + | chr7_2:55675080-55675099 | None:intergenic | 30.0% |
| ! | ACATGTGGAAAATTTTGTGA+AGG | + | chr7_2:55675081-55675100 | None:intergenic | 30.0% |
| TAAAGGGAAATCATCATAAG+TGG | + | chr7_2:55675160-55675179 | None:intergenic | 30.0% | |
| ! | TCTGATTTCATTGAAAGTGT+TGG | + | chr7_2:55675210-55675229 | None:intergenic | 30.0% |
| TACTTTGCCACAAGAAAATA+TGG | - | chr7_2:55675254-55675273 | Msa1063650:CDS | 30.0% | |
| ! | TGAGACACTTGCATTTTATT+TGG | - | chr7_2:55675413-55675432 | Msa1063650:CDS | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | - | chr7_2:55675506-55675525 | Msa1063650:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | - | chr7_2:55675510-55675529 | Msa1063650:CDS | 30.0% |
| !! | TGGAAAAATGGCTCATTTTT+CGG | - | chr7_2:55675530-55675549 | Msa1063650:CDS | 30.0% |
| TTCATCACAATCTTCTAACA+TGG | + | chr7_2:55675580-55675599 | None:intergenic | 30.0% | |
| !! | TGAATGTGTTTGGAATTTTG+AGG | - | chr7_2:55675719-55675738 | Msa1063650:CDS | 30.0% |
| ! | ATACTCATAAAGTTCCCTTT+TGG | + | chr7_2:55675748-55675767 | None:intergenic | 30.0% |
| TATGAGTATGCTAAATCATG+TGG | - | chr7_2:55675759-55675778 | Msa1063650:CDS | 30.0% | |
| ! | ATCATGTGGTTTGAAATTGA+AGG | - | chr7_2:55675773-55675792 | Msa1063650:CDS | 30.0% |
| !! | TTGGCTTTCAAGTTAATGAT+AGG | - | chr7_2:55675870-55675889 | Msa1063650:CDS | 30.0% |
| ATAGTTCTTGATCAAATCCT+CGG | + | chr7_2:55675958-55675977 | None:intergenic | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | - | chr7_2:55675966-55675985 | Msa1063650:CDS | 30.0% | |
| !! | GGAATTATTACTTTTGGTGA+TGG | - | chr7_2:55675987-55676006 | Msa1063650:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7_2:55676049-55676068 | Msa1063650:CDS | 30.0% |
| CAATCAAGAGAAGATATACA+AGG | + | chr7_2:55676167-55676186 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7_2:55676165-55676184 | Msa1063650:CDS | 30.0% | |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7_2:55676178-55676197 | Msa1063650:CDS | 30.0% |
| GAACATAGTCATCATCAATA+TGG | + | chr7_2:55674810-55674829 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7_2:55674926-55674945 | None:intergenic | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7_2:55674935-55674954 | None:intergenic | 30.0% | |
| GATTCTAATTCCATTAGAGA+TGG | + | chr7_2:55674982-55675001 | None:intergenic | 30.0% | |
| AATACCAAGAAGAAAGTGAA+GGG | - | chr7_2:55675049-55675068 | Msa1063650:CDS | 30.0% | |
| ! | CATGTGGAAAATTTTGTGAA+GGG | + | chr7_2:55675080-55675099 | None:intergenic | 30.0% |
| ! | ACATGTGGAAAATTTTGTGA+AGG | + | chr7_2:55675081-55675100 | None:intergenic | 30.0% |
| TAAAGGGAAATCATCATAAG+TGG | + | chr7_2:55675160-55675179 | None:intergenic | 30.0% | |
| ! | TCTGATTTCATTGAAAGTGT+TGG | + | chr7_2:55675210-55675229 | None:intergenic | 30.0% |
| TACTTTGCCACAAGAAAATA+TGG | - | chr7_2:55675254-55675273 | Msa1063650:CDS | 30.0% | |
| ! | TGAGACACTTGCATTTTATT+TGG | - | chr7_2:55675413-55675432 | Msa1063650:CDS | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | - | chr7_2:55675506-55675525 | Msa1063650:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | - | chr7_2:55675510-55675529 | Msa1063650:CDS | 30.0% |
| !! | TGGAAAAATGGCTCATTTTT+CGG | - | chr7_2:55675530-55675549 | Msa1063650:CDS | 30.0% |
| TTCATCACAATCTTCTAACA+TGG | + | chr7_2:55675580-55675599 | None:intergenic | 30.0% | |
| !! | TGAATGTGTTTGGAATTTTG+AGG | - | chr7_2:55675719-55675738 | Msa1063650:CDS | 30.0% |
| ! | ATACTCATAAAGTTCCCTTT+TGG | + | chr7_2:55675748-55675767 | None:intergenic | 30.0% |
| TATGAGTATGCTAAATCATG+TGG | - | chr7_2:55675759-55675778 | Msa1063650:CDS | 30.0% | |
| ! | ATCATGTGGTTTGAAATTGA+AGG | - | chr7_2:55675773-55675792 | Msa1063650:CDS | 30.0% |
| !! | TTGGCTTTCAAGTTAATGAT+AGG | - | chr7_2:55675870-55675889 | Msa1063650:CDS | 30.0% |
| ATAGTTCTTGATCAAATCCT+CGG | + | chr7_2:55675958-55675977 | None:intergenic | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | - | chr7_2:55675966-55675985 | Msa1063650:CDS | 30.0% | |
| !! | GGAATTATTACTTTTGGTGA+TGG | - | chr7_2:55675987-55676006 | Msa1063650:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7_2:55676049-55676068 | Msa1063650:CDS | 30.0% |
| CAATCAAGAGAAGATATACA+AGG | + | chr7_2:55676167-55676186 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7_2:55676165-55676184 | Msa1063650:CDS | 30.0% | |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7_2:55676178-55676197 | Msa1063650:CDS | 30.0% |
| GATGATGACTATGTTCCATA+TGG | - | chr7_2:55674814-55674833 | Msa1063650:CDS | 35.0% | |
| TCCAATTGATGAAGAAACCT+TGG | - | chr7_2:55674951-55674970 | Msa1063650:CDS | 35.0% | |
| TCCAAGGTTTCTTCATCAAT+TGG | + | chr7_2:55674955-55674974 | None:intergenic | 35.0% | |
| !! | TCCATTTTGAGTCCACAAAT+TGG | - | chr7_2:55675009-55675028 | Msa1063650:CDS | 35.0% |
| ACCAATTTGTGGACTCAAAA+TGG | + | chr7_2:55675013-55675032 | None:intergenic | 35.0% | |
| GAATACCAAGAAGAAAGTGA+AGG | - | chr7_2:55675048-55675067 | Msa1063650:CDS | 35.0% | |
| ! | CACAGGGAGAATTTTGTAAA+GGG | + | chr7_2:55675176-55675195 | None:intergenic | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | + | chr7_2:55675177-55675196 | None:intergenic | 35.0% |
| ! | CAATTGGAGTGGTAACTTTT+TGG | + | chr7_2:55675383-55675402 | None:intergenic | 35.0% |
| CAAAAAGTTACCACTCCAAT+TGG | - | chr7_2:55675381-55675400 | Msa1063650:CDS | 35.0% | |
| AATCATGGAGAATACCTCAA+AGG | - | chr7_2:55675450-55675469 | Msa1063650:CDS | 35.0% | |
| !!! | GAATTTTCAGGCTGCTTTTA+AGG | - | chr7_2:55675485-55675504 | Msa1063650:CDS | 35.0% |
| AGGGAATTTGGTTGGAAAAA+TGG | - | chr7_2:55675518-55675537 | Msa1063650:CDS | 35.0% | |
| !! | GAATTTTGAGGATGCCAAAA+GGG | - | chr7_2:55675731-55675750 | Msa1063650:CDS | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | - | chr7_2:55675779-55675798 | Msa1063650:CDS | 35.0% |
| GAAATTGAAGGTAGAGGAAA+AGG | - | chr7_2:55675785-55675804 | Msa1063650:CDS | 35.0% | |
| AAAATAATGAACGAAACGGG+TGG | - | chr7_2:55675834-55675853 | Msa1063650:CDS | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | - | chr7_2:55675884-55675903 | Msa1063650:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | - | chr7_2:55675885-55675904 | Msa1063650:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7_2:55675957-55675976 | Msa1063650:CDS | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | - | chr7_2:55675965-55675984 | Msa1063650:CDS | 35.0% | |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7_2:55676177-55676196 | Msa1063650:CDS | 35.0% |
| AGTGATGGCTATCATCATAA+AGG | - | chr7_2:55676212-55676231 | Msa1063650:CDS | 35.0% | |
| GATGATGACTATGTTCCATA+TGG | - | chr7_2:55674814-55674833 | Msa1063650:CDS | 35.0% | |
| TCCAATTGATGAAGAAACCT+TGG | - | chr7_2:55674951-55674970 | Msa1063650:CDS | 35.0% | |
| TCCAAGGTTTCTTCATCAAT+TGG | + | chr7_2:55674955-55674974 | None:intergenic | 35.0% | |
| !! | TCCATTTTGAGTCCACAAAT+TGG | - | chr7_2:55675009-55675028 | Msa1063650:CDS | 35.0% |
| ACCAATTTGTGGACTCAAAA+TGG | + | chr7_2:55675013-55675032 | None:intergenic | 35.0% | |
| GAATACCAAGAAGAAAGTGA+AGG | - | chr7_2:55675048-55675067 | Msa1063650:CDS | 35.0% | |
| ! | CACAGGGAGAATTTTGTAAA+GGG | + | chr7_2:55675176-55675195 | None:intergenic | 35.0% |
| ! | TCACAGGGAGAATTTTGTAA+AGG | + | chr7_2:55675177-55675196 | None:intergenic | 35.0% |
| ! | CAATTGGAGTGGTAACTTTT+TGG | + | chr7_2:55675383-55675402 | None:intergenic | 35.0% |
| CAAAAAGTTACCACTCCAAT+TGG | - | chr7_2:55675381-55675400 | Msa1063650:CDS | 35.0% | |
| AATCATGGAGAATACCTCAA+AGG | - | chr7_2:55675450-55675469 | Msa1063650:CDS | 35.0% | |
| !!! | GAATTTTCAGGCTGCTTTTA+AGG | - | chr7_2:55675485-55675504 | Msa1063650:CDS | 35.0% |
| AGGGAATTTGGTTGGAAAAA+TGG | - | chr7_2:55675518-55675537 | Msa1063650:CDS | 35.0% | |
| !! | GAATTTTGAGGATGCCAAAA+GGG | - | chr7_2:55675731-55675750 | Msa1063650:CDS | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | - | chr7_2:55675779-55675798 | Msa1063650:CDS | 35.0% |
| GAAATTGAAGGTAGAGGAAA+AGG | - | chr7_2:55675785-55675804 | Msa1063650:CDS | 35.0% | |
| AAAATAATGAACGAAACGGG+TGG | - | chr7_2:55675834-55675853 | Msa1063650:CDS | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | - | chr7_2:55675884-55675903 | Msa1063650:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | - | chr7_2:55675885-55675904 | Msa1063650:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7_2:55675957-55675976 | Msa1063650:CDS | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | - | chr7_2:55675965-55675984 | Msa1063650:CDS | 35.0% | |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7_2:55676177-55676196 | Msa1063650:CDS | 35.0% |
| AGTGATGGCTATCATCATAA+AGG | - | chr7_2:55676212-55676231 | Msa1063650:CDS | 35.0% | |
| TGTTCCATATGGCATCATCA+TGG | - | chr7_2:55674825-55674844 | Msa1063650:CDS | 40.0% | |
| ! | TCATCCATGATGATGCCATA+TGG | + | chr7_2:55674832-55674851 | None:intergenic | 40.0% |
| CATTAGAGATGGAAGTTCCA+AGG | + | chr7_2:55674971-55674990 | None:intergenic | 40.0% | |
| CTTGGAACTTCCATCTCTAA+TGG | - | chr7_2:55674969-55674988 | Msa1063650:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | + | chr7_2:55675056-55675075 | None:intergenic | 40.0% | |
| ! | AATTTTCCACATGTCCTCGA+AGG | - | chr7_2:55675087-55675106 | Msa1063650:CDS | 40.0% |
| ! | ATTTTCCACATGTCCTCGAA+GGG | - | chr7_2:55675088-55675107 | Msa1063650:CDS | 40.0% |
| GATTTGAACTATACCCTTCG+AGG | + | chr7_2:55675104-55675123 | None:intergenic | 40.0% | |
| ! | ATTTTACAACTGTCTCCGAG+GGG | + | chr7_2:55675126-55675145 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | + | chr7_2:55675127-55675146 | None:intergenic | 40.0% |
| GAAATCATCATAAGTGGCAC+TGG | + | chr7_2:55675154-55675173 | None:intergenic | 40.0% | |
| AAAATTCTCCCTGTGATGCA+TGG | - | chr7_2:55675181-55675200 | Msa1063650:CDS | 40.0% | |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7_2:55675331-55675350 | None:intergenic | 40.0% |
| GCTCAAGAAGTGACAAATCA+TGG | - | chr7_2:55675435-55675454 | Msa1063650:CDS | 40.0% | |
| ! | CGAGGCATACAAGAATTTTC+AGG | - | chr7_2:55675473-55675492 | Msa1063650:CDS | 40.0% |
| GGTTTGGAAATGGTGTTCAA+TGG | - | chr7_2:55675619-55675638 | Msa1063650:CDS | 40.0% | |
| ! | TGTTCAATGGCCTTTTCTCT+TGG | - | chr7_2:55675632-55675651 | Msa1063650:CDS | 40.0% |
| !! | GGAATTTTGAGGATGCCAAA+AGG | - | chr7_2:55675730-55675749 | Msa1063650:CDS | 40.0% |
| GAAGGTAGAGGAAAAGGAAT+TGG | - | chr7_2:55675791-55675810 | Msa1063650:CDS | 40.0% | |
| ! | GGGTGGAAAGAAAGAGTTTT+TGG | - | chr7_2:55675851-55675870 | Msa1063650:CDS | 40.0% |
| CTTCTAACCATTCCCATATG+TGG | + | chr7_2:55675900-55675919 | None:intergenic | 40.0% | |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | - | chr7_2:55676139-55676158 | Msa1063650:CDS | 40.0% |
| TGGGAAGAGATGAAAAGTGA+TGG | - | chr7_2:55676197-55676216 | Msa1063650:CDS | 40.0% | |
| TGTTCCATATGGCATCATCA+TGG | - | chr7_2:55674825-55674844 | Msa1063650:CDS | 40.0% | |
| ! | TCATCCATGATGATGCCATA+TGG | + | chr7_2:55674832-55674851 | None:intergenic | 40.0% |
| CATTAGAGATGGAAGTTCCA+AGG | + | chr7_2:55674971-55674990 | None:intergenic | 40.0% | |
| CTTGGAACTTCCATCTCTAA+TGG | - | chr7_2:55674969-55674988 | Msa1063650:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | + | chr7_2:55675056-55675075 | None:intergenic | 40.0% | |
| ! | AATTTTCCACATGTCCTCGA+AGG | - | chr7_2:55675087-55675106 | Msa1063650:CDS | 40.0% |
| ! | ATTTTCCACATGTCCTCGAA+GGG | - | chr7_2:55675088-55675107 | Msa1063650:CDS | 40.0% |
| GATTTGAACTATACCCTTCG+AGG | + | chr7_2:55675104-55675123 | None:intergenic | 40.0% | |
| ! | ATTTTACAACTGTCTCCGAG+GGG | + | chr7_2:55675126-55675145 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | + | chr7_2:55675127-55675146 | None:intergenic | 40.0% |
| GAAATCATCATAAGTGGCAC+TGG | + | chr7_2:55675154-55675173 | None:intergenic | 40.0% | |
| AAAATTCTCCCTGTGATGCA+TGG | - | chr7_2:55675181-55675200 | Msa1063650:CDS | 40.0% | |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7_2:55675331-55675350 | None:intergenic | 40.0% |
| GCTCAAGAAGTGACAAATCA+TGG | - | chr7_2:55675435-55675454 | Msa1063650:CDS | 40.0% | |
| ! | CGAGGCATACAAGAATTTTC+AGG | - | chr7_2:55675473-55675492 | Msa1063650:CDS | 40.0% |
| GGTTTGGAAATGGTGTTCAA+TGG | - | chr7_2:55675619-55675638 | Msa1063650:CDS | 40.0% | |
| ! | TGTTCAATGGCCTTTTCTCT+TGG | - | chr7_2:55675632-55675651 | Msa1063650:CDS | 40.0% |
| !! | GGAATTTTGAGGATGCCAAA+AGG | - | chr7_2:55675730-55675749 | Msa1063650:CDS | 40.0% |
| GAAGGTAGAGGAAAAGGAAT+TGG | - | chr7_2:55675791-55675810 | Msa1063650:CDS | 40.0% | |
| ! | GGGTGGAAAGAAAGAGTTTT+TGG | - | chr7_2:55675851-55675870 | Msa1063650:CDS | 40.0% |
| CTTCTAACCATTCCCATATG+TGG | + | chr7_2:55675900-55675919 | None:intergenic | 40.0% | |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | - | chr7_2:55676139-55676158 | Msa1063650:CDS | 40.0% |
| TGGGAAGAGATGAAAAGTGA+TGG | - | chr7_2:55676197-55676216 | Msa1063650:CDS | 40.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7_2:55675108-55675127 | Msa1063650:CDS | 45.0% | |
| ! | CCATTTTACAACTGTCTCCG+AGG | + | chr7_2:55675128-55675147 | None:intergenic | 45.0% |
| CCTCGGAGACAGTTGTAAAA+TGG | - | chr7_2:55675125-55675144 | Msa1063650:CDS | 45.0% | |
| ! | ATCATCATAAGTGGCACTGG+CGG | + | chr7_2:55675151-55675170 | None:intergenic | 45.0% |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7_2:55675290-55675309 | None:intergenic | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7_2:55675290-55675309 | Msa1063650:CDS | 45.0% | |
| AAGAGAGTCACCAATTGGAG+TGG | + | chr7_2:55675394-55675413 | None:intergenic | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | + | chr7_2:55675399-55675418 | None:intergenic | 45.0% | |
| ! | TCAATGGCCTTTTCTCTTGG+AGG | - | chr7_2:55675635-55675654 | Msa1063650:CDS | 45.0% |
| GAAACAGCCTCCAAGAGAAA+AGG | + | chr7_2:55675645-55675664 | None:intergenic | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | - | chr7_2:55675890-55675909 | Msa1063650:CDS | 45.0% | |
| !! | TGAGTTTTTGAAGGTAGCCG+AGG | - | chr7_2:55675938-55675957 | Msa1063650:CDS | 45.0% |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7_2:55675108-55675127 | Msa1063650:CDS | 45.0% | |
| ! | CCATTTTACAACTGTCTCCG+AGG | + | chr7_2:55675128-55675147 | None:intergenic | 45.0% |
| CCTCGGAGACAGTTGTAAAA+TGG | - | chr7_2:55675125-55675144 | Msa1063650:CDS | 45.0% | |
| ! | ATCATCATAAGTGGCACTGG+CGG | + | chr7_2:55675151-55675170 | None:intergenic | 45.0% |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7_2:55675290-55675309 | None:intergenic | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7_2:55675290-55675309 | Msa1063650:CDS | 45.0% | |
| AAGAGAGTCACCAATTGGAG+TGG | + | chr7_2:55675394-55675413 | None:intergenic | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+TGG | + | chr7_2:55675399-55675418 | None:intergenic | 45.0% | |
| ! | TCAATGGCCTTTTCTCTTGG+AGG | - | chr7_2:55675635-55675654 | Msa1063650:CDS | 45.0% |
| GAAACAGCCTCCAAGAGAAA+AGG | + | chr7_2:55675645-55675664 | None:intergenic | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | - | chr7_2:55675890-55675909 | Msa1063650:CDS | 45.0% | |
| !! | TGAGTTTTTGAAGGTAGCCG+AGG | - | chr7_2:55675938-55675957 | Msa1063650:CDS | 45.0% |
| CTATACCCTTCGAGGACATG+TGG | + | chr7_2:55675096-55675115 | None:intergenic | 50.0% | |
| GTTGGACTCCATGCATCACA+GGG | + | chr7_2:55675192-55675211 | None:intergenic | 50.0% | |
| TGTTGGACTCCATGCATCAC+AGG | + | chr7_2:55675193-55675212 | None:intergenic | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7_2:55675303-55675322 | None:intergenic | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7_2:55675300-55675319 | Msa1063650:CDS | 50.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | - | chr7_2:55675318-55675337 | Msa1063650:CDS | 50.0% | |
| TGGAGAATACCTCAAAGGCG+AGG | - | chr7_2:55675455-55675474 | Msa1063650:CDS | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7_2:55675467-55675486 | None:intergenic | 50.0% | |
| CTATACCCTTCGAGGACATG+TGG | + | chr7_2:55675096-55675115 | None:intergenic | 50.0% | |
| GTTGGACTCCATGCATCACA+GGG | + | chr7_2:55675192-55675211 | None:intergenic | 50.0% | |
| TGTTGGACTCCATGCATCAC+AGG | + | chr7_2:55675193-55675212 | None:intergenic | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7_2:55675303-55675322 | None:intergenic | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7_2:55675300-55675319 | Msa1063650:CDS | 50.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | - | chr7_2:55675318-55675337 | Msa1063650:CDS | 50.0% | |
| TGGAGAATACCTCAAAGGCG+AGG | - | chr7_2:55675455-55675474 | Msa1063650:CDS | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7_2:55675467-55675486 | None:intergenic | 50.0% | |
| ! | GGAAGCACATGGTGAAGCCT+TGG | - | chr7_2:55675311-55675330 | Msa1063650:CDS | 55.0% |
| ! | GGAAGCACATGGTGAAGCCT+TGG | - | chr7_2:55675311-55675330 | Msa1063650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 55674799 | 55676247 | 55674799 | ID=Msa1063650;Name=Msa1063650 |
| chr7_2 | mRNA | 55674799 | 55676247 | 55674799 | ID=Msa1063650-mRNA-1;Parent=Msa1063650;Name=Msa1063650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|482 |
| chr7_2 | exon | 55674799 | 55676247 | 55674799 | ID=Msa1063650-mRNA-1:exon:10459;Parent=Msa1063650-mRNA-1 |
| chr7_2 | CDS | 55674799 | 55676247 | 55674799 | ID=Msa1063650-mRNA-1:cds;Parent=Msa1063650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
