AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066640 MtrunA17_Chr7g0247131 81.250 240 10 2 54 258 9 248 6.28e-136 384
Msa1066640 MtrunA17_Chr8g0349261 65.035 286 59 6 11 258 1 283 2.45e-122 350
Msa1066640 MtrunA17_Chr1g0203411 51.773 282 87 7 11 257 1 268 1.05e-85 257
Msa1066640 MtrunA17_Chr4g0042671 65.896 173 45 2 11 170 1 172 2.19e-77 239
Msa1066640 MtrunA17_Chr6g0453471 66.471 170 43 2 11 167 1 169 2.69e-77 238
Msa1066640 MtrunA17_Chr7g0217741 67.066 167 44 2 11 167 1 166 3.08e-77 236
Msa1066640 MtrunA17_Chr4g0039971 76.744 129 29 1 11 139 2 129 3.13e-72 224
Msa1066640 MtrunA17_Chr3g0115821 69.853 136 40 1 11 146 1 135 8.45e-70 218
Msa1066640 MtrunA17_Chr2g0281071 73.077 130 33 2 11 139 1 129 2.17e-67 212
Msa1066640 MtrunA17_Chr2g0323411 72.868 129 34 1 11 139 1 128 2.32e-66 209
Msa1066640 MtrunA17_Chr5g0395281 70.543 129 37 1 11 139 1 128 5.56e-66 207
Msa1066640 MtrunA17_Chr5g0434571 54.000 200 79 4 8 207 34 220 1.44e-65 207
Msa1066640 MtrunA17_Chr4g0048511 70.769 130 36 2 11 139 1 129 1.87e-65 207
Msa1066640 MtrunA17_Chr3g0110351 72.656 128 34 1 11 138 1 127 2.46e-64 203
Msa1066640 MtrunA17_Chr5g0410961 68.217 129 40 1 11 139 1 128 7.71e-64 203
Msa1066640 MtrunA17_Chr7g0228891 69.767 129 38 1 11 139 1 128 8.74e-63 198
Msa1066640 MtrunA17_Chr4g0057031 71.318 129 36 1 11 139 1 128 1.20e-62 197
Msa1066640 MtrunA17_Chr1g0187761 65.672 134 45 1 11 144 1 133 2.43e-62 196
Msa1066640 MtrunA17_Chr3g0121241 64.925 134 46 1 6 139 26 158 4.54e-62 197
Msa1066640 MtrunA17_Chr4g0037141 54.878 164 67 2 11 168 1 163 1.08e-61 195
Msa1066640 MtrunA17_Chr8g0385321 55.882 170 74 1 11 180 1 169 1.14e-61 196
Msa1066640 MtrunA17_Chr1g0193371 68.217 129 40 1 11 139 1 128 1.59e-61 197
Msa1066640 MtrunA17_Chr3g0131121 67.717 127 40 1 11 137 1 126 2.36e-61 195
Msa1066640 MtrunA17_Chr1g0167661 68.217 129 36 2 11 139 1 124 4.06e-61 193
Msa1066640 MtrunA17_Chr1g0167691 74.359 117 29 1 11 127 1 116 4.14e-61 193
Msa1066640 MtrunA17_Chr7g0261281 72.650 117 31 1 11 127 1 116 1.31e-59 190
Msa1066640 MtrunA17_Chr7g0275911 68.908 119 36 1 11 129 1 118 1.52e-59 189
Msa1066640 MtrunA17_Chr7g0274581 65.254 118 40 1 11 128 1 117 9.26e-59 185
Msa1066640 MtrunA17_Chr4g0068061 69.231 117 35 1 11 127 1 116 9.94e-59 189
Msa1066640 MtrunA17_Chr7g0270891 66.667 129 42 1 11 139 1 128 1.47e-58 190
Msa1066640 MtrunA17_Chr1g0193801 66.667 129 42 1 11 139 1 128 2.17e-58 190
Msa1066640 MtrunA17_Chr4g0058631 54.070 172 69 2 11 173 1 171 1.84e-57 187
Msa1066640 MtrunA17_Chr7g0217221 71.186 118 33 1 11 128 1 117 2.09e-57 184
Msa1066640 MtrunA17_Chr3g0092401 57.792 154 62 3 11 164 2 152 2.50e-57 185
Msa1066640 MtrunA17_Chr5g0435101 53.529 170 76 3 13 181 2 169 3.26e-57 181
Msa1066640 MtrunA17_Chr4g0060721 55.975 159 64 4 11 167 2 156 3.72e-57 185
Msa1066640 MtrunA17_Chr7g0254411 66.667 126 39 2 11 134 1 125 2.07e-56 183
Msa1066640 MtrunA17_Chr8g0346561 66.949 118 38 1 11 128 1 117 3.05e-56 182
Msa1066640 MtrunA17_Chr3g0117091 65.891 129 43 1 11 139 1 128 4.16e-56 183
Msa1066640 MtrunA17_Chr7g0271241 67.442 129 41 1 11 139 1 128 5.92e-56 184
Msa1066640 MtrunA17_Chr1g0194951 65.116 129 44 1 11 139 1 128 1.23e-55 182
Msa1066640 MtrunA17_Chr3g0103281 55.769 156 63 4 11 163 1 153 1.74e-55 181
Msa1066640 MtrunA17_Chr6g0452271 58.519 135 55 1 11 145 1 134 1.86e-55 181
Msa1066640 MtrunA17_Chr4g0070611 66.667 120 39 1 11 130 1 119 2.57e-55 180
Msa1066640 MtrunA17_Chr4g0070641 66.667 120 39 1 11 130 1 119 3.89e-55 175
Msa1066640 MtrunA17_Chr1g0211161 65.354 127 43 1 13 139 4 129 8.34e-55 176
Msa1066640 MtrunA17_Chr2g0309911 64.754 122 42 1 16 137 5 125 8.78e-55 179
Msa1066640 MtrunA17_Chr5g0417821 57.432 148 56 2 21 162 6 152 1.21e-54 177
Msa1066640 MtrunA17_Chr2g0330041 54.268 164 62 4 11 174 1 151 5.65e-54 179
Msa1066640 MtrunA17_Chr6g0453211 68.750 112 34 1 11 122 1 111 3.56e-53 174
Msa1066640 MtrunA17_Chr7g0269831 69.167 120 36 1 11 130 1 119 1.02e-51 172
Msa1066640 MtrunA17_Chr5g0400821 57.895 133 54 1 11 143 1 131 1.76e-51 170
Msa1066640 MtrunA17_Chr8g0342521 44.976 209 90 6 11 205 1 198 2.27e-51 171
Msa1066640 MtrunA17_Chr8g0342541 43.750 208 98 5 11 205 1 202 3.27e-51 170
Msa1066640 MtrunA17_Chr1g0151941 59.829 117 47 0 11 127 1 117 4.10e-51 167
Msa1066640 MtrunA17_Chr4g0022931 64.706 119 40 2 11 128 1 118 4.39e-51 168
Msa1066640 MtrunA17_Chr4g0028311 57.031 128 55 0 11 138 1 128 6.32e-51 169
Msa1066640 MtrunA17_Chr3g0135311 61.538 117 45 0 11 127 1 117 7.26e-51 169
Msa1066640 MtrunA17_Chr7g0264641 60.000 120 48 0 11 130 1 120 7.52e-51 167
Msa1066640 MtrunA17_Chr4g0044421 61.111 126 47 2 13 137 2 126 6.14e-50 162
Msa1066640 MtrunA17_Chr4g0022901 65.812 117 38 2 11 126 1 116 7.86e-50 164
Msa1066640 MtrunA17_Chr8g0387421 61.017 118 45 1 11 128 1 117 1.26e-49 166
Msa1066640 MtrunA17_Chr1g0152011 59.829 117 47 0 11 127 1 117 1.88e-49 166
Msa1066640 MtrunA17_Chr2g0327351 63.063 111 41 0 11 121 1 111 4.62e-49 164
Msa1066640 MtrunA17_Chr2g0323351 64.103 117 41 1 11 127 1 116 1.02e-48 161
Msa1066640 MtrunA17_Chr2g0311221 64.865 111 38 1 12 122 4 113 1.52e-48 163
Msa1066640 MtrunA17_Chr5g0397231 63.964 111 39 1 11 121 1 110 3.17e-48 162
Msa1066640 MtrunA17_Chr4g0072751 62.162 111 42 0 11 121 1 111 5.10e-48 162
Msa1066640 MtrunA17_Chr4g0022911 62.393 117 42 2 11 126 1 116 6.27e-48 160
Msa1066640 MtrunA17_Chr6g0487491 58.065 124 44 1 11 126 1 124 6.55e-48 159
Msa1066640 MtrunA17_Chr8g0342481 59.664 119 48 0 11 129 1 119 7.25e-48 163
Msa1066640 MtrunA17_Chr4g0022891 58.824 119 48 1 11 129 1 118 3.62e-47 157
Msa1066640 MtrunA17_Chr4g0032401 61.607 112 42 1 22 133 17 127 6.87e-47 159
Msa1066640 MtrunA17_Chr8g0354661 65.741 108 36 1 22 129 37 143 1.09e-46 163
Msa1066640 MtrunA17_Chr2g0328771 63.303 109 39 1 22 130 20 127 2.79e-46 157
Msa1066640 MtrunA17_Chr4g0054391 59.091 110 45 0 11 120 1 110 5.48e-46 155
Msa1066640 MtrunA17_Chr4g0022881 57.391 115 48 1 11 125 1 114 1.19e-45 152
Msa1066640 MtrunA17_Chr6g0450101 59.016 122 47 2 11 130 1 121 6.65e-45 150
Msa1066640 MtrunA17_Chr3g0088461 63.063 111 40 1 18 128 18 127 7.11e-45 154
Msa1066640 MtrunA17_Chr1g0168661 61.682 107 40 1 23 129 22 127 2.27e-44 150
Msa1066640 MtrunA17_Chr7g0228231 64.486 107 37 1 22 128 14 119 4.36e-44 148
Msa1066640 MtrunA17_Chr1g0154031 61.739 115 42 2 22 135 76 189 3.79e-43 151
Msa1066640 MtrunA17_Chr3g0080861 60.185 108 42 1 22 129 37 143 1.47e-42 151
Msa1066640 MtrunA17_Chr2g0294811 57.851 121 46 2 11 127 1 120 2.29e-42 140
Msa1066640 MtrunA17_Chr3g0099131 62.857 105 38 1 22 126 41 144 2.69e-42 151
Msa1066640 MtrunA17_Chr1g0209661 50.376 133 63 2 1 133 8 137 7.73e-42 145
Msa1066640 MtrunA17_Chr1g0186061 58.879 107 43 1 23 129 21 126 1.05e-41 143
Msa1066640 MtrunA17_Chr1g0194301 52.893 121 56 1 18 138 29 148 4.01e-41 142
Msa1066640 MtrunA17_Chr2g0322521 62.162 111 41 1 19 129 26 135 4.20e-41 145
Msa1066640 MtrunA17_Chr4g0055981 55.085 118 52 1 19 136 52 168 1.05e-40 140
Msa1066640 MtrunA17_Chr4g0042611 70.787 89 25 1 11 99 1 88 1.85e-40 134
Msa1066640 MtrunA17_Chr1g0203441 60.000 105 41 1 23 127 14 117 2.44e-40 140
Msa1066640 MtrunA17_Chr1g0180391 57.944 107 44 1 22 128 19 124 8.03e-40 137
Msa1066640 MtrunA17_Chr6g0470971 54.545 121 53 2 17 136 9 128 1.38e-39 138
Msa1066640 MtrunA17_Chr8g0343831 54.237 118 49 2 11 128 1 113 1.98e-39 137
Msa1066640 MtrunA17_Chr1g0194291 55.172 116 51 1 18 133 17 131 2.89e-39 137
Msa1066640 MtrunA17_Chr7g0240821 52.174 115 54 1 27 141 6 119 1.01e-38 134
Msa1066640 MtrunA17_Chr5g0434911 46.512 129 65 2 1 129 3 127 7.42e-37 131
Msa1066640 MtrunA17_Chr5g0434931 52.727 110 51 1 20 129 33 141 9.02e-37 131
Msa1066640 MtrunA17_Chr1g0192411 49.630 135 59 3 11 138 1 133 1.44e-36 133
Msa1066640 MtrunA17_Chr2g0327821 53.271 107 49 1 22 128 6 111 1.74e-36 129
Msa1066640 MtrunA17_Chr4g0030881 54.054 111 43 2 23 126 8 117 2.86e-36 129
Msa1066640 MtrunA17_Chr5g0440781 51.327 113 52 3 23 134 13 123 3.32e-36 127
Msa1066640 MtrunA17_Chr7g0220341 54.054 111 48 2 21 129 24 133 5.51e-36 129
Msa1066640 MtrunA17_Chr5g0434831 52.778 108 50 1 20 127 5 111 6.67e-36 126
Msa1066640 MtrunA17_Chr5g0440761 42.593 162 82 6 23 181 13 166 2.41e-35 127
Msa1066640 MtrunA17_Chr5g0441141 42.593 162 82 6 23 181 13 166 3.17e-35 127
Msa1066640 MtrunA17_Chr4g0068921 52.893 121 56 1 18 138 20 139 5.49e-35 124
Msa1066640 MtrunA17_Chr2g0293911 56.034 116 50 1 18 133 20 134 6.62e-35 127
Msa1066640 MtrunA17_Chr5g0434841 52.778 108 50 1 20 127 18 124 2.48e-34 125
Msa1066640 MtrunA17_Chr7g0228991 51.818 110 52 1 20 129 27 135 2.93e-34 124
Msa1066640 MtrunA17_Chr8g0360111 54.369 103 46 1 21 123 24 125 3.80e-34 124
Msa1066640 MtrunA17_Chr5g0395221 62.921 89 32 1 11 99 1 88 6.70e-34 117
Msa1066640 MtrunA17_Chr5g0441131 52.212 113 51 3 23 134 10 120 8.22e-34 120
Msa1066640 MtrunA17_Chr8g0342511 59.091 88 35 1 11 98 1 87 1.08e-33 117
Msa1066640 MtrunA17_Chr8g0342531 54.639 97 43 1 11 107 1 96 2.93e-33 119
Msa1066640 MtrunA17_Chr8g0334881 53.509 114 50 3 18 130 6 117 1.83e-32 120
Msa1066640 MtrunA17_Chr8g0342461 55.556 90 40 0 11 100 1 90 2.30e-32 115
Msa1066640 MtrunA17_Chr2g0323321 59.140 93 36 2 11 103 1 91 2.33e-32 114
Msa1066640 MtrunA17_Chr8g0342471 55.556 90 40 0 11 100 1 90 3.32e-32 115
Msa1066640 MtrunA17_Chr3g0099141 55.682 88 38 1 18 105 36 122 3.49e-31 112
Msa1066640 MtrunA17_Chr6g0454921 51.351 111 50 3 24 133 15 122 1.44e-30 113
Msa1066640 MtrunA17_Chr4g0008551 53.846 104 44 3 24 126 38 138 2.03e-30 116
Msa1066640 MtrunA17_Chr3g0093811 49.057 106 46 1 54 151 13 118 3.56e-30 113
Msa1066640 MtrunA17_Chr5g0401731 49.593 123 58 3 24 145 15 134 5.32e-30 114
Msa1066640 MtrunA17_Chr4g0013361 47.899 119 57 3 22 139 10 124 9.44e-30 113
Msa1066640 MtrunA17_Chr7g0247141 95.833 48 2 0 11 58 1 48 8.25e-29 103
Msa1066640 MtrunA17_Chr3g0133601 49.541 109 51 3 24 131 37 142 5.61e-28 107
Msa1066640 MtrunA17_Chr5g0437321 50.000 108 49 4 18 123 12 116 1.09e-26 105
Msa1066640 MtrunA17_Chr4g0053431 45.455 121 55 4 24 139 5 119 1.50e-26 104
Msa1066640 MtrunA17_Chr7g0229101 60.563 71 28 0 54 124 3 73 2.58e-26 102
Msa1066640 MtrunA17_Chr7g0229131 48.454 97 49 1 54 150 3 98 1.09e-25 99.4
Msa1066640 MtrunA17_Chr6g0453751 50.526 95 39 2 20 106 18 112 2.56e-25 97.1
Msa1066640 MtrunA17_Chr7g0238631 50.909 110 44 3 22 127 111 214 6.04e-25 103
Msa1066640 MtrunA17_Chr5g0429661 50.505 99 47 1 22 120 120 216 8.51e-25 100
Msa1066640 MtrunA17_Chr4g0058991 49.038 104 49 3 19 121 204 304 1.31e-24 101
Msa1066640 MtrunA17_Chr1g0157731 38.462 169 88 5 22 177 89 254 1.55e-24 102
Msa1066640 MtrunA17_Chr3g0139671 47.706 109 53 3 22 129 83 188 1.96e-24 102
Msa1066640 MtrunA17_Chr4g0042621 59.756 82 20 1 100 168 15 96 2.35e-24 99.4
Msa1066640 MtrunA17_Chr6g0480581 44.538 119 58 4 24 137 4 119 2.68e-24 97.4
Msa1066640 MtrunA17_Chr5g0434901 57.746 71 30 0 54 124 4 74 4.11e-24 93.6
Msa1066640 MtrunA17_Chr5g0425591 49.412 85 41 2 23 106 10 93 1.42e-23 91.3
Msa1066640 MtrunA17_Chr3g0117511 40.909 132 51 5 24 133 183 309 4.49e-22 94.4
Msa1066640 MtrunA17_Chr7g0228531 48.148 108 48 4 24 129 220 321 5.56e-22 94.0
Msa1066640 MtrunA17_Chr3g0125801 44.643 112 58 3 18 128 10 118 8.15e-21 89.4
Msa1066640 MtrunA17_Chr6g0460661 40.741 108 60 3 24 130 16 120 1.25e-20 85.9
Msa1066640 MtrunA17_Chr7g0233061 45.045 111 48 5 24 128 180 283 3.08e-20 88.6
Msa1066640 MtrunA17_Chr1g0177901 50.000 78 38 1 44 121 13 89 6.45e-20 85.1
Msa1066640 MtrunA17_Chr5g0417621 43.636 110 50 4 24 128 134 236 1.33e-19 87.4
Msa1066640 MtrunA17_Chr7g0238651 44.118 102 54 2 27 126 10 110 3.37e-19 85.5
Msa1066640 MtrunA17_Chr5g0397841 47.000 100 49 3 22 120 108 204 3.63e-19 86.3
Msa1066640 MtrunA17_Chr4g0042501 42.453 106 57 3 24 128 105 207 6.51e-19 85.5
Msa1066640 MtrunA17_Chr6g0460671 38.095 126 69 4 6 130 86 203 3.31e-18 82.8
Msa1066640 MtrunA17_Chr7g0228401 57.143 63 27 0 59 121 312 374 4.20e-18 83.2
Msa1066640 MtrunA17_Chr7g0228481 44.000 100 49 3 24 121 220 314 6.13e-18 82.4
Msa1066640 MtrunA17_Chr5g0395231 62.745 51 19 0 89 139 5 55 6.91e-17 77.8
Msa1066640 MtrunA17_Chr5g0416341 42.857 105 52 4 27 128 29 128 8.13e-17 79.3
Msa1066640 MtrunA17_Chr8g0362231 36.434 129 76 3 3 129 1 125 2.88e-16 77.8
Msa1066640 MtrunA17_Chr1g0193901 56.452 62 25 2 20 80 9 69 5.16e-16 72.0
Msa1066640 MtrunA17_Chr1g0193891 56.452 62 25 2 20 80 9 69 5.16e-16 72.0
Msa1066640 MtrunA17_Chr1g0193871 56.452 62 25 2 20 80 9 69 5.16e-16 72.0
Msa1066640 MtrunA17_Chr1g0193881 56.452 62 25 2 20 80 9 69 5.16e-16 72.0
Msa1066640 MtrunA17_Chr7g0254261 38.136 118 64 4 10 126 80 189 2.33e-15 74.7
Msa1066640 MtrunA17_Chr5g0434871 55.556 45 20 0 85 129 2 46 1.32e-13 64.3
Msa1066640 MtrunA17_Chr3g0145551 54.098 61 23 1 103 158 2 62 1.56e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066640 AT3G61250.1 61.278 266 82 6 11 258 1 263 1.95e-106 310
Msa1066640 AT3G01140.2 65.746 181 45 3 11 175 1 180 9.76e-80 244
Msa1066640 AT5G15310.4 67.857 168 42 2 11 167 1 167 1.40e-77 235
Msa1066640 AT5G15310.1 67.857 168 42 2 11 167 1 167 2.59e-77 237
Msa1066640 AT5G15310.2 67.857 168 42 2 11 167 1 167 2.69e-77 236
Msa1066640 AT3G01140.1 65.169 178 45 3 14 175 47 223 1.93e-76 237
Msa1066640 AT1G34670.1 47.347 245 107 6 11 246 1 232 2.05e-68 216
Msa1066640 AT3G02940.2 71.318 129 36 1 11 139 1 128 7.76e-68 212
Msa1066640 AT4G21440.1 70.543 129 37 1 11 139 1 128 1.66e-67 213
Msa1066640 AT5G16770.4 71.318 129 36 1 11 139 1 128 1.66e-67 212
Msa1066640 AT5G16770.3 71.318 129 36 1 11 139 1 128 1.66e-67 212
Msa1066640 AT3G02940.1 71.318 129 36 1 11 139 1 128 2.26e-67 211
Msa1066640 AT3G02940.3 71.318 129 36 1 11 139 1 128 2.26e-67 211
Msa1066640 AT5G10280.1 69.767 129 38 1 11 139 1 128 5.39e-67 211
Msa1066640 AT5G16770.1 71.318 129 36 1 11 139 1 128 6.57e-67 211
Msa1066640 AT5G16770.2 71.318 129 36 1 11 139 1 128 6.57e-67 211
Msa1066640 AT4G28110.1 70.543 129 37 1 11 139 1 128 1.15e-65 206
Msa1066640 AT4G05100.1 70.769 130 36 2 11 139 1 129 3.03e-65 206
Msa1066640 AT1G66230.1 71.318 129 36 1 11 139 1 128 1.43e-64 203
Msa1066640 AT5G65230.1 69.767 129 38 1 11 139 1 128 1.75e-64 204
Msa1066640 AT5G16600.1 59.756 164 55 3 11 174 1 153 9.01e-64 202
Msa1066640 AT4G22680.1 70.543 129 37 1 11 139 1 128 1.14e-63 200
Msa1066640 AT4G12350.1 69.767 129 38 1 11 139 1 128 7.26e-63 199
Msa1066640 AT3G13540.1 43.750 256 101 6 14 247 15 249 1.62e-62 197
Msa1066640 AT1G06180.1 75.214 117 28 1 11 127 1 116 4.82e-62 195
Msa1066640 AT4G17785.2 64.706 136 46 2 11 145 1 135 5.82e-62 198
Msa1066640 AT4G17785.1 64.706 136 46 2 11 145 1 135 1.00e-61 198
Msa1066640 AT2G16720.1 66.929 127 41 1 11 137 1 126 2.03e-61 194
Msa1066640 AT2G31180.1 55.114 176 67 3 11 185 1 165 4.14e-61 193
Msa1066640 AT1G22640.1 63.433 134 48 1 11 144 1 133 4.29e-61 193
Msa1066640 AT1G35515.1 53.757 173 77 2 11 181 1 172 5.93e-61 191
Msa1066640 AT3G23250.1 72.881 118 31 1 11 128 1 117 7.02e-61 194
Msa1066640 AT4G09460.1 66.142 127 42 1 11 137 1 126 8.16e-61 192
Msa1066640 AT4G38620.1 63.235 136 49 1 11 146 1 135 1.61e-60 192
Msa1066640 AT5G26660.1 66.667 129 42 1 11 139 1 128 7.13e-60 193
Msa1066640 AT1G09540.1 66.667 129 42 1 11 139 1 128 8.95e-60 193
Msa1066640 AT5G14340.1 66.667 129 42 1 11 139 13 140 1.15e-59 190
Msa1066640 AT5G60890.1 63.235 136 49 1 11 146 1 135 6.48e-59 189
Msa1066640 AT4G34990.1 65.116 129 44 1 11 139 1 128 1.66e-58 187
Msa1066640 AT1G08810.1 71.795 117 32 1 11 127 1 116 3.08e-58 187
Msa1066640 AT1G57560.1 64.341 129 45 1 11 139 1 128 6.07e-58 187
Msa1066640 AT1G57560.2 64.341 129 45 1 11 139 1 128 7.45e-58 186
Msa1066640 AT2G47460.1 63.235 136 49 1 11 146 1 135 1.24e-57 188
Msa1066640 AT3G47600.1 70.833 120 34 1 11 130 1 119 1.43e-57 187
Msa1066640 AT4G01680.3 66.406 128 42 1 11 138 1 127 1.88e-57 183
Msa1066640 AT5G61420.2 63.158 133 48 1 11 143 1 132 2.83e-57 187
Msa1066640 AT5G62320.1 63.636 132 42 1 12 137 3 134 3.52e-57 183
Msa1066640 AT5G49330.1 66.667 120 39 1 11 130 1 119 7.78e-57 185
Msa1066640 AT5G56110.1 61.240 129 49 1 11 139 1 128 8.34e-57 184
Msa1066640 AT5G07690.1 64.341 129 45 1 11 139 1 128 8.51e-57 185
Msa1066640 AT5G62470.2 70.000 120 35 1 11 130 1 119 1.11e-56 185
Msa1066640 AT4G01680.1 66.406 128 42 1 11 138 1 127 1.12e-56 184
Msa1066640 AT3G28910.1 68.293 123 38 1 11 133 1 122 1.32e-56 184
Msa1066640 AT1G74650.1 71.795 117 32 1 11 127 1 116 3.41e-56 183
Msa1066640 AT1G74430.1 64.234 137 48 1 11 147 1 136 4.03e-56 181
Msa1066640 AT5G54230.1 65.116 129 44 1 11 139 1 128 4.75e-56 182
Msa1066640 AT1G18570.1 65.891 129 42 2 11 138 1 128 6.97e-56 183
Msa1066640 AT3G62610.1 69.231 117 35 1 11 127 1 116 2.03e-55 181
Msa1066640 AT1G79180.1 50.490 204 91 5 12 206 4 206 2.04e-55 180
Msa1066640 AT5G62470.1 70.000 120 34 2 11 130 1 118 2.86e-55 181
Msa1066640 AT1G16490.1 67.797 118 37 1 12 129 4 120 3.28e-55 179
Msa1066640 AT1G18710.1 65.116 129 44 1 11 139 1 128 6.51e-55 178
Msa1066640 AT5G07700.1 61.654 133 50 1 11 143 1 132 1.51e-54 179
Msa1066640 AT5G07700.2 61.654 133 50 1 11 143 1 132 1.51e-54 179
Msa1066640 AT1G74080.1 64.062 128 45 1 11 138 1 127 1.83e-54 179
Msa1066640 AT1G56160.1 67.241 116 37 1 12 127 4 118 4.71e-54 176
Msa1066640 AT4G01680.2 60.714 140 42 2 11 138 1 139 1.33e-53 177
Msa1066640 AT3G12720.1 60.305 131 50 2 7 137 8 136 1.84e-52 173
Msa1066640 AT3G12820.1 67.826 115 36 1 13 127 5 118 1.87e-52 171
Msa1066640 AT3G13890.2 64.706 119 41 1 11 129 1 118 2.25e-52 174
Msa1066640 AT4G37780.1 61.345 119 46 0 11 129 1 119 1.03e-51 171
Msa1066640 AT1G63910.1 56.296 135 58 1 11 145 1 134 4.13e-51 171
Msa1066640 AT3G49690.1 61.538 117 45 0 11 127 1 117 1.96e-50 167
Msa1066640 AT5G57620.1 61.538 117 45 0 11 127 1 117 2.73e-50 168
Msa1066640 AT5G65790.1 60.684 117 46 0 11 127 1 117 9.07e-50 167
Msa1066640 AT3G13890.1 60.156 128 41 2 11 129 1 127 2.60e-49 166
Msa1066640 AT2G36890.2 53.623 138 64 0 6 143 37 174 2.60e-49 166
Msa1066640 AT2G36890.1 54.887 133 60 0 11 143 1 133 5.05e-49 164
Msa1066640 AT1G79180.2 43.460 237 91 6 12 206 4 239 1.43e-48 163
Msa1066640 AT5G23000.1 59.829 117 47 0 11 127 1 117 1.59e-48 163
Msa1066640 AT3G28470.1 58.915 129 52 1 11 139 1 128 3.32e-48 162
Msa1066640 AT2G32460.1 60.000 125 48 2 14 138 10 132 3.78e-48 166
Msa1066640 AT2G32460.2 62.185 119 43 2 20 138 4 120 8.36e-48 165
Msa1066640 AT5G55020.1 68.224 107 33 1 22 128 26 131 2.10e-47 165
Msa1066640 AT5G12870.1 63.063 111 40 1 20 130 16 125 1.74e-45 154
Msa1066640 AT3G08500.1 63.964 111 39 1 18 128 26 135 2.17e-45 155
Msa1066640 AT5G14750.1 57.500 120 50 1 8 127 2 120 2.21e-45 151
Msa1066640 AT4G26930.1 66.346 104 34 1 22 125 19 121 3.84e-45 156
Msa1066640 AT3G01530.1 57.937 126 46 2 9 128 6 130 7.48e-45 150
Msa1066640 AT3G27810.1 63.551 107 38 1 22 128 20 125 3.57e-44 149
Msa1066640 AT5G06100.1 58.036 112 46 1 18 129 28 138 6.55e-44 154
Msa1066640 AT5G40330.1 60.952 105 40 1 23 127 13 116 6.86e-44 148
Msa1066640 AT3G27920.1 46.012 163 76 3 23 174 15 176 8.47e-44 148
Msa1066640 AT3G24310.1 60.360 111 43 1 19 129 15 124 1.21e-43 149
Msa1066640 AT5G06100.5 58.036 112 46 1 18 129 28 138 2.32e-43 154
Msa1066640 AT5G06100.2 58.036 112 46 1 18 129 28 138 2.32e-43 154
Msa1066640 AT5G06100.3 58.036 112 46 1 18 129 28 138 2.32e-43 154
Msa1066640 AT5G06100.4 58.036 112 46 1 18 129 28 138 2.32e-43 154
Msa1066640 AT1G25340.1 56.897 116 49 1 23 138 19 133 2.91e-43 148
Msa1066640 AT2G26960.1 62.281 114 41 2 19 132 17 128 3.88e-43 151
Msa1066640 AT5G40350.1 61.818 110 41 1 22 131 17 125 3.96e-43 146
Msa1066640 AT3G11440.2 56.410 117 46 2 17 129 32 147 5.49e-43 152
Msa1066640 AT4G13480.1 62.264 106 39 1 23 128 7 111 1.02e-42 146
Msa1066640 AT3G11440.3 56.410 117 46 2 17 129 32 147 2.68e-42 151
Msa1066640 AT3G11440.4 56.410 117 46 2 17 129 32 147 2.68e-42 151
Msa1066640 AT3G11440.1 56.410 117 46 2 17 129 32 147 2.68e-42 151
Msa1066640 AT5G35550.1 54.286 140 53 4 11 146 1 133 3.15e-42 145
Msa1066640 AT3G30210.1 58.716 109 44 1 21 129 26 133 3.34e-42 145
Msa1066640 AT1G68320.1 57.143 112 47 1 22 133 19 129 1.21e-41 144
Msa1066640 AT5G26660.2 72.619 84 23 0 56 139 14 97 1.26e-40 142
Msa1066640 AT5G52600.1 50.769 130 54 2 19 139 9 137 3.66e-40 138
Msa1066640 AT3G46130.1 55.455 110 48 1 19 128 6 114 1.80e-39 138
Msa1066640 AT5G59780.3 57.692 104 43 1 23 126 9 111 6.28e-39 135
Msa1066640 AT1G25340.2 54.310 116 47 2 23 138 19 128 6.51e-39 137
Msa1066640 AT1G25340.3 54.310 116 47 2 23 138 19 128 1.03e-38 137
Msa1066640 AT1G66370.1 56.897 116 45 2 11 126 1 111 1.20e-38 135
Msa1066640 AT2G47190.1 53.571 112 51 1 22 133 20 130 2.09e-38 135
Msa1066640 AT3G53200.1 57.143 105 44 1 22 126 9 112 1.02e-37 132
Msa1066640 AT3G06490.1 57.025 121 51 1 18 138 15 134 1.31e-37 135
Msa1066640 AT1G48000.1 54.464 112 50 1 22 133 32 142 2.27e-37 132
Msa1066640 AT3G48920.1 50.407 123 55 2 19 141 15 131 1.16e-36 130
Msa1066640 AT5G52260.1 45.402 174 77 6 10 176 3 165 2.88e-35 127
Msa1066640 AT2G26950.1 53.509 114 51 2 19 132 13 124 2.88e-35 130
Msa1066640 AT4G25560.1 54.054 111 49 2 23 132 11 120 1.87e-34 125
Msa1066640 AT3G47600.2 74.667 75 19 0 56 130 39 113 1.97e-34 126
Msa1066640 AT1G66380.1 58.879 107 43 1 20 126 6 111 3.65e-34 120
Msa1066640 AT5G14750.3 62.195 82 26 1 51 127 5 86 7.67e-34 120
Msa1066640 AT5G49620.1 53.846 117 53 1 22 138 26 141 1.99e-33 123
Msa1066640 AT5G35550.2 61.224 98 30 2 51 146 45 136 1.44e-32 120
Msa1066640 AT1G56650.1 57.009 107 45 1 20 126 6 111 3.75e-32 118
Msa1066640 AT3G60460.1 51.327 113 53 2 19 130 8 119 5.71e-32 119
Msa1066640 AT1G66390.1 57.944 107 44 1 20 126 6 111 7.48e-32 117
Msa1066640 AT3G12820.2 72.857 70 19 0 58 127 1 70 1.39e-31 115
Msa1066640 AT3G27810.2 65.753 73 25 0 56 128 4 76 4.98e-31 114
Msa1066640 AT3G46130.3 64.865 74 26 0 55 128 9 82 1.78e-30 113
Msa1066640 AT3G46130.4 65.753 73 25 0 56 128 20 92 4.31e-30 113
Msa1066640 AT5G59780.2 65.753 73 25 0 56 128 20 92 4.72e-30 112
Msa1066640 AT3G53200.2 64.789 71 25 0 56 126 9 79 5.02e-30 112
Msa1066640 AT1G22640.3 64.000 75 27 0 70 144 2 76 7.20e-30 111
Msa1066640 AT5G49620.2 48.092 131 53 2 22 138 26 155 7.77e-30 114
Msa1066640 AT5G40350.2 63.158 76 28 0 56 131 5 80 9.33e-30 110
Msa1066640 AT1G18960.1 47.899 119 52 3 24 139 10 121 1.12e-28 110
Msa1066640 AT3G09230.1 50.000 108 44 3 24 127 55 156 1.27e-27 109
Msa1066640 AT3G55730.1 49.074 108 51 3 24 130 56 160 7.47e-27 107
Msa1066640 AT3G23250.2 76.271 59 14 0 70 128 2 60 1.61e-26 103
Msa1066640 AT2G39880.1 50.000 104 48 3 24 126 50 150 1.90e-26 106
Msa1066640 AT5G40360.1 43.307 127 69 3 4 130 138 261 3.59e-26 105
Msa1066640 AT3G50060.1 49.038 104 49 3 24 126 6 106 8.41e-26 103
Msa1066640 AT1G71030.2 53.947 76 35 0 62 137 5 80 1.24e-25 99.8
Msa1066640 AT1G71030.1 53.947 76 35 0 62 137 19 94 1.86e-25 99.8
Msa1066640 AT4G18770.1 38.514 148 83 3 19 162 212 355 3.73e-25 103
Msa1066640 AT2G23290.1 50.000 104 48 3 24 126 13 113 7.86e-25 100
Msa1066640 AT5G11510.3 48.624 109 52 3 22 129 79 184 1.57e-24 102
Msa1066640 AT5G11510.1 48.624 109 52 3 22 129 79 184 1.57e-24 102
Msa1066640 AT5G11510.4 48.624 109 52 3 22 129 79 184 1.57e-24 102
Msa1066640 AT5G67300.1 45.312 128 62 5 24 146 6 130 1.63e-24 99.8
Msa1066640 AT5G11510.2 48.624 109 52 3 22 129 79 184 1.64e-24 102
Msa1066640 AT5G11510.5 48.624 109 52 3 22 129 79 184 1.72e-24 102
Msa1066640 AT5G15310.3 61.250 80 20 1 99 167 9 88 1.80e-24 98.6
Msa1066640 AT5G02320.3 49.074 108 51 3 22 128 65 169 2.15e-24 101
Msa1066640 AT5G02320.1 49.074 108 51 3 22 128 125 229 2.17e-24 102
Msa1066640 AT5G02320.2 49.074 108 51 3 22 128 125 229 2.17e-24 102
Msa1066640 AT4G37260.1 48.077 104 50 3 24 126 13 113 3.26e-24 99.4
Msa1066640 AT5G58850.1 42.975 121 67 1 1 121 82 200 6.89e-24 99.8
Msa1066640 AT1G66380.3 59.740 77 31 0 50 126 2 78 1.87e-23 92.0
Msa1066640 AT3G09370.1 49.541 109 45 3 22 126 128 230 2.26e-23 99.0
Msa1066640 AT3G09370.2 49.541 109 45 3 22 126 133 235 2.37e-23 99.0
Msa1066640 AT1G17950.1 47.115 104 51 3 24 126 5 105 2.44e-23 95.5
Msa1066640 AT3G09370.3 49.541 109 45 3 22 126 141 243 2.73e-23 98.6
Msa1066640 AT5G14750.4 63.793 58 21 0 70 127 2 59 2.82e-23 92.4
Msa1066640 AT5G14750.2 63.793 58 21 0 70 127 2 59 2.82e-23 92.4
Msa1066640 AT3G27785.1 48.039 102 51 2 19 120 184 283 3.07e-23 98.2
Msa1066640 AT4G32730.1 44.954 109 56 3 22 129 85 190 2.30e-22 96.3
Msa1066640 AT4G32730.5 44.954 109 56 3 22 129 85 190 2.73e-22 96.3
Msa1066640 AT4G32730.4 44.954 109 56 3 22 129 85 190 2.73e-22 96.3
Msa1066640 AT4G32730.3 44.954 109 56 3 22 129 85 190 2.73e-22 96.3
Msa1066640 AT4G32730.2 44.954 109 56 3 22 129 85 190 2.73e-22 96.3
Msa1066640 AT4G00540.2 45.536 112 56 3 22 130 101 210 4.77e-22 94.4
Msa1066640 AT4G00540.1 45.536 112 56 3 22 130 99 208 8.64e-22 94.0
Msa1066640 AT5G11050.1 45.631 103 52 3 20 121 101 200 8.90e-22 94.0
Msa1066640 AT1G73410.1 46.226 106 53 3 24 128 6 108 1.63e-21 90.5
Msa1066640 AT1G73410.2 46.226 106 53 3 24 128 6 108 3.46e-21 88.6
Msa1066640 AT4G33450.1 42.202 109 59 3 19 126 14 119 1.85e-20 87.8
Msa1066640 AT1G69560.1 40.909 110 63 1 19 128 102 209 2.13e-20 89.0
Msa1066640 AT1G69560.2 40.909 110 63 1 19 128 118 225 2.46e-20 89.0
Msa1066640 AT2G25230.1 42.857 112 59 4 19 129 21 128 2.57e-20 87.0
Msa1066640 AT1G66380.2 54.651 86 38 1 20 105 6 90 4.02e-20 83.2
Msa1066640 AT1G26780.1 42.056 107 60 1 22 128 96 200 1.35e-19 85.9
Msa1066640 AT1G26780.2 42.056 107 60 1 22 128 96 200 3.46e-19 85.9
Msa1066640 AT5G61420.1 70.833 48 14 0 92 139 2 49 4.81e-17 79.0
Msa1066640 AT3G29020.1 37.736 106 62 3 24 128 65 167 7.23e-17 77.8
Msa1066640 AT5G17800.1 39.640 111 65 2 18 128 87 195 8.50e-17 79.0
Msa1066640 AT2G37630.1 37.391 115 69 2 27 139 7 120 1.30e-16 79.0
Msa1066640 AT3G29020.2 37.736 106 62 3 24 128 67 169 2.03e-16 77.8
Msa1066640 AT2G02820.3 40.196 102 59 1 27 128 33 132 2.24e-16 77.8
Msa1066640 AT5G59780.1 62.500 48 18 0 81 128 1 48 2.79e-16 74.7
Msa1066640 AT5G40430.1 34.884 129 70 5 6 129 36 155 2.96e-16 76.6
Msa1066640 AT3G46130.2 62.500 48 18 0 81 128 1 48 3.28e-16 75.1
Msa1066640 AT2G02820.1 40.196 102 59 1 27 128 33 132 6.88e-16 77.0
Msa1066640 AT2G02820.2 40.196 102 59 1 27 128 33 132 9.45e-16 76.6
Msa1066640 AT1G14350.2 40.196 102 59 1 27 128 28 127 2.07e-15 75.5
Msa1066640 AT1G14350.1 40.196 102 59 1 27 128 28 127 2.07e-15 75.5
Msa1066640 AT4G28110.2 73.171 41 11 0 99 139 4 44 6.74e-15 71.6
Msa1066640 AT3G28910.2 65.217 46 16 0 88 133 1 46 9.94e-15 72.0
Msa1066640 AT1G74650.3 75.000 40 10 0 88 127 1 40 1.23e-14 72.0
Msa1066640 AT1G74430.2 57.377 61 25 1 88 147 7 67 3.13e-14 69.7
Msa1066640 AT1G22640.2 63.043 46 17 0 99 144 16 61 1.61e-13 67.4
Msa1066640 AT4G25560.2 55.769 52 22 1 82 132 3 54 7.09e-13 66.2
Msa1066640 AT5G14340.2 65.854 41 14 0 99 139 10 50 1.47e-12 65.1
Msa1066640 AT1G14350.3 48.387 62 32 0 67 128 23 84 3.46e-12 65.9
Msa1066640 AT1G14350.4 48.387 62 32 0 67 128 23 84 3.46e-12 65.9
Msa1066640 AT5G39700.1 33.636 110 71 2 19 128 51 158 5.04e-12 63.5

Find 45 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATTACTTTCTCCGTATA+TGG 0.178709 7_2:-60711462 Msa1066640:CDS
AAGTGAAGAGAGAAAGAAAA+TGG 0.225118 7_2:-60714278 Msa1066640:CDS
TATCTCATTGTCTGTTCTTC+CGG 0.226667 7_2:+60711723 None:intergenic
ATCTCATTGTCTGTTCTTCC+GGG 0.293138 7_2:+60711724 None:intergenic
ACAATGAGATAAAGAACTTT+TGG 0.296577 7_2:-60711711 Msa1066640:CDS
ATGTTAGTATGATCTGTATC+TGG 0.314171 7_2:+60711400 None:intergenic
TTCGCTGTGGTAAGAGTTGT+AGG 0.328913 7_2:-60712765 Msa1066640:CDS
TGAAATGAAACCTGTGATCT+TGG 0.404281 7_2:+60714135 None:intergenic
TTCATGCTATCCTTGGAAAT+AGG 0.412323 7_2:-60712663 Msa1066640:intron
CAACTTCAGAGTTCCATATA+CGG 0.425073 7_2:+60711449 None:intergenic
GATAAGAAGGGTTTGAAGAA+AGG 0.426388 7_2:-60714238 Msa1066640:CDS
AGTGAAGAGAGAAAGAAAAT+GGG 0.439627 7_2:-60714277 Msa1066640:CDS
CAACATGTCACATGGCTCAA+TGG 0.444152 7_2:-60711579 Msa1066640:CDS
ATTCAGCTTCATGCTATCCT+TGG 0.444507 7_2:-60712670 Msa1066640:CDS
AACATGTCACATGGCTCAAT+GGG 0.447962 7_2:-60711578 Msa1066640:CDS
CGTATATGGAACTCTGAAGT+TGG 0.454090 7_2:-60711448 Msa1066640:CDS
TGATGAATCTTGCAAGTCAT+TGG 0.458871 7_2:+60711207 None:intergenic
GAAGAAACGTCTCAAAAGCC+TGG 0.462496 7_2:-60711677 Msa1066640:CDS
GACACCTTGTTGTGATAAGA+AGG 0.463796 7_2:-60714251 Msa1066640:CDS
CGTTCTCTTCCCAAGATCAC+AGG 0.469797 7_2:-60714145 Msa1066640:intron
GTGGTAAGAGTTGTAGGCTT+AGG 0.479481 7_2:-60712759 Msa1066640:CDS
TTGTGAAAGAAGAGTTGGAT+TGG 0.480337 7_2:-60711285 Msa1066640:CDS
AAAATGGTGGTCATGGAAGC+TGG 0.495565 7_2:-60714168 Msa1066640:CDS
GAAATGAAACCTGTGATCTT+GGG 0.498334 7_2:+60714136 None:intergenic
TAGTATTGTGAAAGAAGAGT+TGG 0.500514 7_2:-60711290 Msa1066640:CDS
AATGTCAGGTCTGAGATAGT+TGG 0.502224 7_2:+60712732 None:intergenic
GAACTGTTTACCTATTTCCA+AGG 0.507409 7_2:+60712653 None:intergenic
AAGGGTCCACGTTTAATGTC+AGG 0.525709 7_2:+60712718 None:intergenic
GTAAGAGTTGTAGGCTTAGG+TGG 0.537463 7_2:-60712756 Msa1066640:CDS
AAATAACAAGTCACGCGCAT+CGG 0.537764 7_2:-60711605 Msa1066640:intron
TGGCTCAATGGGAGAGTGCA+AGG 0.542923 7_2:-60711567 Msa1066640:CDS
AGGACCTTGGACTGCTGAAG+AGG 0.547560 7_2:-60714218 Msa1066640:CDS
AGGGTTTGAAGAAAGGACCT+TGG 0.560635 7_2:-60714231 Msa1066640:CDS
AAGAGAGAAAGAAAATGGGA+AGG 0.561518 7_2:-60714273 Msa1066640:CDS
AAGAAACGTCTCAAAAGCCT+GGG 0.574138 7_2:-60711676 Msa1066640:CDS
TCATCCTCTTCAGCAGTCCA+AGG 0.575790 7_2:+60714214 None:intergenic
CTTTCAGGTCTTCTTCGCTG+TGG 0.579170 7_2:-60712778 Msa1066640:intron
ATCGGTTTCAACATGTCACA+TGG 0.592107 7_2:-60711587 Msa1066640:CDS
ACACCTTGTTGTGATAAGAA+GGG 0.593768 7_2:-60714250 Msa1066640:CDS
GCAATTGCATCTCAGTTACC+CGG 0.621059 7_2:-60711742 Msa1066640:CDS
ACGTGGACCCTTTACTCCTG+AGG 0.625196 7_2:-60712707 Msa1066640:CDS
CTCAGACCTGACATTAAACG+TGG 0.626723 7_2:-60712724 Msa1066640:CDS
AGTTGGAGATGCATTTCGCA+AGG 0.630719 7_2:-60711431 Msa1066640:CDS
AAACCCTTCTTATCACAACA+AGG 0.646045 7_2:+60714247 None:intergenic
TATACGGAGAAAGTAATCAG+AGG 0.679714 7_2:+60711465 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTAATTAATAACCAT+TGG - chr7_2:60712565-60712584 Msa1066640:intron 10.0%
!!! TTATTATATATTTTACTTTC+AGG - chr7_2:60712685-60712704 Msa1066640:CDS 10.0%
!!! ATGTTTTTTAAAATACTAGT+TGG - chr7_2:60711415-60711434 Msa1066640:CDS 15.0%
!! ATCCTAAAGAATTAATATTA+TGG - chr7_2:60711615-60711634 Msa1066640:intron 15.0%
!! ATCCATAATATTAATTCTTT+AGG + chr7_2:60711620-60711639 None:intergenic 15.0%
!! AAGAATTAATATTATGGATT+TGG - chr7_2:60711621-60711640 Msa1066640:intron 15.0%
!! TTCTTAAAAGTTAAAAAAAC+AGG - chr7_2:60712080-60712099 Msa1066640:intron 15.0%
!! AATAATAACAACAATTTCTT+TGG - chr7_2:60712599-60712618 Msa1066640:intron 15.0%
!!! TCCTAAACAATATTTTTATT+CGG + chr7_2:60713259-60713278 None:intergenic 15.0%
!! AACAAATTTAACAAAATTTC+AGG - chr7_2:60713707-60713726 Msa1066640:intron 15.0%
!! GCTAACTATATTAAGAAAAA+TGG - chr7_2:60711294-60711313 Msa1066640:CDS 20.0%
!! AACTATATTAAGAAAAATGG+TGG - chr7_2:60711297-60711316 Msa1066640:CDS 20.0%
!!! ATTTTACAAAACTACATCTT+TGG + chr7_2:60711441-60711460 None:intergenic 20.0%
!! GACAAAAAAAATCTAAATGT+TGG + chr7_2:60711695-60711714 None:intergenic 20.0%
!!! CTTGAATAAACTTTTTTTCA+AGG - chr7_2:60711745-60711764 Msa1066640:CDS 20.0%
!!! ATTTTTATGTCTCTCAATAA+TGG - chr7_2:60711834-60711853 Msa1066640:intron 20.0%
!! TCAAGAAAAAAAAATAGAGT+GGG + chr7_2:60712059-60712078 None:intergenic 20.0%
!!! AAAATTGAAAACAAGAGTTT+TGG + chr7_2:60712480-60712499 None:intergenic 20.0%
!! AAAGAAATTGAATCATTGTT+TGG + chr7_2:60712523-60712542 None:intergenic 20.0%
!! AAACAATGATTCAATTTCTT+TGG - chr7_2:60712522-60712541 Msa1066640:intron 20.0%
!! AACAGTTCAGTATTTAATTA+AGG - chr7_2:60712840-60712859 Msa1066640:intron 20.0%
!! TAAATATCATAGATTTGTGA+AGG + chr7_2:60712930-60712949 None:intergenic 20.0%
!!! TAAAACATGATTTTGAATAG+AGG - chr7_2:60713108-60713127 Msa1066640:intron 20.0%
!!! TAAACAATATTTTTATTCGG+GGG + chr7_2:60713256-60713275 None:intergenic 20.0%
!!! CTAAACAATATTTTTATTCG+GGG + chr7_2:60713257-60713276 None:intergenic 20.0%
!!! CCTAAACAATATTTTTATTC+GGG + chr7_2:60713258-60713277 None:intergenic 20.0%
!! AAATTTAACAAAATTTCAGG+TGG - chr7_2:60713710-60713729 Msa1066640:intron 20.0%
!!! AATTTAACAAAATTTCAGGT+GGG - chr7_2:60713711-60713730 Msa1066640:intron 20.0%
! ACTTAGCAAGACATATATAA+AGG + chr7_2:60711370-60711389 None:intergenic 25.0%
!!! GATGTAGTTTTGTAAAATCA+TGG - chr7_2:60711443-60711462 Msa1066640:CDS 25.0%
!! TTTAGGATTGACTTTGAATT+TGG + chr7_2:60711603-60711622 None:intergenic 25.0%
! AGAACTTTCTTAACTTTCTT+TGG - chr7_2:60711787-60711806 Msa1066640:intron 25.0%
! AGACATAAAAATTACCAACA+AGG + chr7_2:60711826-60711845 None:intergenic 25.0%
!! TATGAAGTTTAGAACAAAAG+TGG - chr7_2:60711883-60711902 Msa1066640:intron 25.0%
!! ATGAAGTTTAGAACAAAAGT+GGG - chr7_2:60711884-60711903 Msa1066640:intron 25.0%
! CTCAAGAAAAAAAAATAGAG+TGG + chr7_2:60712060-60712079 None:intergenic 25.0%
! AATTTATAATGTTCCAAGCA+TGG + chr7_2:60712151-60712170 None:intergenic 25.0%
! TTAATTGTTGACAAAGTTGA+TGG + chr7_2:60712220-60712239 None:intergenic 25.0%
! AGGAAAGAAAAGAAAAAATG+TGG + chr7_2:60712294-60712313 None:intergenic 25.0%
! ATTGCTACACTACATTTATT+AGG - chr7_2:60712387-60712406 Msa1066640:intron 25.0%
!!! AGTTTTGGTTAGGAATATAT+TGG + chr7_2:60712465-60712484 None:intergenic 25.0%
! TGAAGTCTTTAATTAATGTC+TGG + chr7_2:60712647-60712666 None:intergenic 25.0%
! TTCAATTCATACAGTTTCTT+TGG - chr7_2:60712871-60712890 Msa1066640:intron 25.0%
!! TGAAACTTTTAGATCTCTAT+AGG - chr7_2:60713062-60713081 Msa1066640:intron 25.0%
!! ATAAAATAAGTTTAGAGCGA+AGG + chr7_2:60713216-60713235 None:intergenic 25.0%
!!! AAACAATATTTTTATTCGGG+GGG + chr7_2:60713255-60713274 None:intergenic 25.0%
! CCCGAATAAAAATATTGTTT+AGG - chr7_2:60713255-60713274 Msa1066640:intron 25.0%
! AATTATAACTTACGCAATGT+AGG + chr7_2:60713378-60713397 None:intergenic 25.0%
! CTCAACTTAACTAAAATTCA+TGG - chr7_2:60713405-60713424 Msa1066640:intron 25.0%
! ACTATCTAGATTTAAAGATC+AGG + chr7_2:60713610-60713629 None:intergenic 25.0%
! GATCTTTAAATCTAGATAGT+TGG - chr7_2:60713610-60713629 Msa1066640:intron 25.0%
!! ACAATGAGATAAAGAACTTT+TGG - chr7_2:60713767-60713786 Msa1066640:intron 25.0%
!! TCAATTTTTGTGAAGGAATT+AGG + chr7_2:60713988-60714007 None:intergenic 25.0%
AAGTGAAGAGAGAAAGAAAA+TGG - chr7_2:60711200-60711219 Msa1066640:CDS 30.0%
AGTGAAGAGAGAAAGAAAAT+GGG - chr7_2:60711201-60711220 Msa1066640:CDS 30.0%
ATTAAGAAAAATGGTGGTCA+TGG - chr7_2:60711303-60711322 Msa1066640:intron 30.0%
! TTTTGTAAAATCATGGTGAC+CGG - chr7_2:60711450-60711469 Msa1066640:CDS 30.0%
! TCTAGAACTTCACAAAATCA+TGG + chr7_2:60711545-60711564 None:intergenic 30.0%
TTTATGTCTCTCAATAATGG+TGG - chr7_2:60711837-60711856 Msa1066640:intron 30.0%
TTATGTCTCTCAATAATGGT+GGG - chr7_2:60711838-60711857 Msa1066640:intron 30.0%
! TGAAGTTTAGAACAAAAGTG+GGG - chr7_2:60711885-60711904 Msa1066640:intron 30.0%
ACGCATATAAAACCAAAGAT+AGG + chr7_2:60711936-60711955 None:intergenic 30.0%
!!! TTTGGTTTTATATGCGTCAA+TGG - chr7_2:60711939-60711958 Msa1066640:intron 30.0%
ATGTTCAAGAGTCCTTAAAT+TGG + chr7_2:60712002-60712021 None:intergenic 30.0%
AGAAAAAATGTGGTTGAGAA+GGG + chr7_2:60712284-60712303 None:intergenic 30.0%
AAGAAAAAATGTGGTTGAGA+AGG + chr7_2:60712285-60712304 None:intergenic 30.0%
!! TATGTTTCAAGTTCGTAGAA+AGG + chr7_2:60712314-60712333 None:intergenic 30.0%
TCGCTCAAATAACAAAATGT+TGG - chr7_2:60712357-60712376 Msa1066640:intron 30.0%
TTGGTTAGGAATATATTGGA+AGG + chr7_2:60712461-60712480 None:intergenic 30.0%
!!! TGAAAACAAGAGTTTTGGTT+AGG + chr7_2:60712475-60712494 None:intergenic 30.0%
!! TTATTTTGCTTCTTTGCCAA+TGG + chr7_2:60712584-60712603 None:intergenic 30.0%
! ATGACTAATTTTTCTTCCTC+AGG + chr7_2:60712790-60712809 None:intergenic 30.0%
ATTCATACAGTTTCTTTGGA+AGG - chr7_2:60712875-60712894 Msa1066640:intron 30.0%
! TTCATACAGTTTCTTTGGAA+GGG - chr7_2:60712876-60712895 Msa1066640:intron 30.0%
! ATTTTACGTACTACATGAAG+AGG + chr7_2:60712957-60712976 None:intergenic 30.0%
TAGCAAAATTTGTGACACAA+GGG + chr7_2:60713137-60713156 None:intergenic 30.0%
ATAGCAAAATTTGTGACACA+AGG + chr7_2:60713138-60713157 None:intergenic 30.0%
AAAATTGCGTTTAAATGCTG+AGG - chr7_2:60713163-60713182 Msa1066640:intron 30.0%
!! AACAATATTTTTATTCGGGG+GGG + chr7_2:60713254-60713273 None:intergenic 30.0%
CTCTCATTTAAACAAGTCTT+AGG - chr7_2:60713457-60713476 Msa1066640:intron 30.0%
GTAAGAGTTTGAACTGATTA+AGG + chr7_2:60713650-60713669 None:intergenic 30.0%
ATTTGGGTAACTAGTTAATG+AGG + chr7_2:60713857-60713876 None:intergenic 30.0%
! GGAAGAATCAATTTTTGTGA+AGG + chr7_2:60713995-60714014 None:intergenic 30.0%
ATGTTAGTATGATCTGTATC+TGG + chr7_2:60714081-60714100 None:intergenic 30.0%
TAGTATTGTGAAAGAAGAGT+TGG - chr7_2:60714188-60714207 Msa1066640:CDS 30.0%
AAGAGAGAAAGAAAATGGGA+AGG - chr7_2:60711205-60711224 Msa1066640:CDS 35.0%
! ACACCTTGTTGTGATAAGAA+GGG - chr7_2:60711228-60711247 Msa1066640:CDS 35.0%
AAACCCTTCTTATCACAACA+AGG + chr7_2:60711234-60711253 None:intergenic 35.0%
GATAAGAAGGGTTTGAAGAA+AGG - chr7_2:60711240-60711259 Msa1066640:CDS 35.0%
GAAATGAAACCTGTGATCTT+GGG + chr7_2:60711345-60711364 None:intergenic 35.0%
TGAAATGAAACCTGTGATCT+TGG + chr7_2:60711346-60711365 None:intergenic 35.0%
! GTCTTGCTAAGTGCATTTTA+AGG - chr7_2:60711378-60711397 Msa1066640:intron 35.0%
TTGTTAGAATCACATGTAGC+CGG + chr7_2:60711472-60711491 None:intergenic 35.0%
TAATAAACATGCACCGAGTT+TGG - chr7_2:60711503-60711522 Msa1066640:CDS 35.0%
ACACATCACTTGCCAATTTA+AGG - chr7_2:60711987-60712006 Msa1066640:intron 35.0%
AAAAAATAGAGTGGGAGACA+AGG + chr7_2:60712051-60712070 None:intergenic 35.0%
GACATATTTAATGCCATGCT+TGG - chr7_2:60712135-60712154 Msa1066640:intron 35.0%
!! GACAAAGTTGATGGATACTT+AGG + chr7_2:60712211-60712230 None:intergenic 35.0%
! TTCATTTAAGGTAGTTAGCG+AGG + chr7_2:60712257-60712276 None:intergenic 35.0%
ATAACGTAAGAAATCCGAGT+CGG - chr7_2:60712331-60712350 Msa1066640:intron 35.0%
! TTTTCTTCCTCAGGAGTAAA+GGG + chr7_2:60712781-60712800 None:intergenic 35.0%
! TTTTTCTTCCTCAGGAGTAA+AGG + chr7_2:60712782-60712801 None:intergenic 35.0%
TTCATGCTATCCTTGGAAAT+AGG - chr7_2:60712815-60712834 Msa1066640:intron 35.0%
GAACTGTTTACCTATTTCCA+AGG + chr7_2:60712828-60712847 None:intergenic 35.0%
TTTCACAACCACAAAATGAG+TGG + chr7_2:60713047-60713066 None:intergenic 35.0%
!! AAGAGCTCTACTTTTATGCT+CGG - chr7_2:60713336-60713355 Msa1066640:intron 35.0%
GATCAACTCAACACATTTGT+AGG + chr7_2:60713483-60713502 None:intergenic 35.0%
GACACAACAGTAGCATTTAT+TGG + chr7_2:60713505-60713524 None:intergenic 35.0%
TATCTCATTGTCTGTTCTTC+CGG + chr7_2:60713758-60713777 None:intergenic 35.0%
TAACTAGTTAATGAGGCTAC+CGG + chr7_2:60713850-60713869 None:intergenic 35.0%
TATACGGAGAAAGTAATCAG+AGG + chr7_2:60714016-60714035 None:intergenic 35.0%
CTGATTACTTTCTCCGTATA+TGG - chr7_2:60714016-60714035 Msa1066640:intron 35.0%
CAACTTCAGAGTTCCATATA+CGG + chr7_2:60714032-60714051 None:intergenic 35.0%
GATAATGATCCTGCAGAAAT+TGG + chr7_2:60714126-60714145 None:intergenic 35.0%
AGAAATGGAGTCACATTTGT+TGG + chr7_2:60714151-60714170 None:intergenic 35.0%
TTGTGAAAGAAGAGTTGGAT+TGG - chr7_2:60714193-60714212 Msa1066640:CDS 35.0%
TGATGAATCTTGCAAGTCAT+TGG + chr7_2:60714274-60714293 None:intergenic 35.0%
! GACACCTTGTTGTGATAAGA+AGG - chr7_2:60711227-60711246 Msa1066640:CDS 40.0%
GAATCAGCTACAATCCTTGT+TGG - chr7_2:60711809-60711828 Msa1066640:intron 40.0%
TTAGAACAAAAGTGGGGTCA+TGG - chr7_2:60711891-60711910 Msa1066640:intron 40.0%
GGGAAGAAAGTTCCTATCTT+TGG - chr7_2:60711921-60711940 Msa1066640:intron 40.0%
AAGGACTCTTGAACATGTGA+AGG - chr7_2:60712006-60712025 Msa1066640:intron 40.0%
AGGACTCTTGAACATGTGAA+GGG - chr7_2:60712007-60712026 Msa1066640:intron 40.0%
GAGAAGGGAGACTTCATTTA+AGG + chr7_2:60712269-60712288 None:intergenic 40.0%
TAACGTAAGAAATCCGAGTC+GGG - chr7_2:60712332-60712351 Msa1066640:intron 40.0%
TTGAATCATTGTTTGGCACG+TGG + chr7_2:60712516-60712535 None:intergenic 40.0%
! AATGTCAGGTCTGAGATAGT+TGG + chr7_2:60712749-60712768 None:intergenic 40.0%
ATTCAGCTTCATGCTATCCT+TGG - chr7_2:60712808-60712827 Msa1066640:intron 40.0%
! CATGAGATCCACTCATTTTG+TGG - chr7_2:60713036-60713055 Msa1066640:intron 40.0%
TGCGTTTAAATGCTGAGGAT+TGG - chr7_2:60713168-60713187 Msa1066640:intron 40.0%
! TAAGTTTAGAGCGAAGGCTT+AGG + chr7_2:60713210-60713229 None:intergenic 40.0%
ATTTGATGTCTCTGCAACTG+CGG + chr7_2:60713533-60713552 None:intergenic 40.0%
AAAGTATGAAACCGCCATCT+TGG + chr7_2:60713571-60713590 None:intergenic 40.0%
ATCTCATTGTCTGTTCTTCC+GGG + chr7_2:60713757-60713776 None:intergenic 40.0%
AAGAAACGTCTCAAAAGCCT+GGG - chr7_2:60713802-60713821 Msa1066640:intron 40.0%
!!! GTGTTTTTGGATCAATTCCC+AGG + chr7_2:60713822-60713841 None:intergenic 40.0%
TGATCCAAAAACACATGAGC+CGG - chr7_2:60713828-60713847 Msa1066640:intron 40.0%
!! ATGCGCGTGACTTGTTATTT+GGG + chr7_2:60713873-60713892 None:intergenic 40.0%
AAATAACAAGTCACGCGCAT+CGG - chr7_2:60713873-60713892 Msa1066640:intron 40.0%
! ATCGGTTTCAACATGTCACA+TGG - chr7_2:60713891-60713910 Msa1066640:intron 40.0%
AACATGTCACATGGCTCAAT+GGG - chr7_2:60713900-60713919 Msa1066640:intron 40.0%
!! CGTATATGGAACTCTGAAGT+TGG - chr7_2:60714030-60714049 Msa1066640:intron 40.0%
AGGGTTTGAAGAAAGGACCT+TGG - chr7_2:60711247-60711266 Msa1066640:CDS 45.0%
AAAATGGTGGTCATGGAAGC+TGG - chr7_2:60711310-60711329 Msa1066640:intron 45.0%
TATTTGAGCGAAACCCGACT+CGG + chr7_2:60712348-60712367 None:intergenic 45.0%
TTCGCTGTGGTAAGAGTTGT+AGG - chr7_2:60712713-60712732 Msa1066640:CDS 45.0%
GTGGTAAGAGTTGTAGGCTT+AGG - chr7_2:60712719-60712738 Msa1066640:CDS 45.0%
GTAAGAGTTGTAGGCTTAGG+TGG - chr7_2:60712722-60712741 Msa1066640:CDS 45.0%
CTCAGACCTGACATTAAACG+TGG - chr7_2:60712754-60712773 Msa1066640:CDS 45.0%
AAGGGTCCACGTTTAATGTC+AGG + chr7_2:60712763-60712782 None:intergenic 45.0%
!! TGAGGATTGGCCCAAGAATA+AGG - chr7_2:60713181-60713200 Msa1066640:intron 45.0%
! GCTTAGGTCGCCTTATTCTT+GGG + chr7_2:60713194-60713213 None:intergenic 45.0%
CTTTGATGTCGTGACCAAGA+TGG - chr7_2:60713554-60713573 Msa1066640:intron 45.0%
GCAATTGCATCTCAGTTACC+CGG - chr7_2:60713736-60713755 Msa1066640:intron 45.0%
GAAGAAACGTCTCAAAAGCC+TGG - chr7_2:60713801-60713820 Msa1066640:intron 45.0%
!! GATGCGCGTGACTTGTTATT+TGG + chr7_2:60713874-60713893 None:intergenic 45.0%
CAACATGTCACATGGCTCAA+TGG - chr7_2:60713899-60713918 Msa1066640:intron 45.0%
AGTTGGAGATGCATTTCGCA+AGG - chr7_2:60714047-60714066 Msa1066640:intron 45.0%
TGTCAGAGTCCAATTTCTGC+AGG - chr7_2:60714114-60714133 Msa1066640:intron 45.0%
TCATCCTCTTCAGCAGTCCA+AGG + chr7_2:60711267-60711286 None:intergenic 50.0%
CGTTCTCTTCCCAAGATCAC+AGG - chr7_2:60711333-60711352 Msa1066640:intron 50.0%
CACCGAGTTTGGCGAAATCA+CGG - chr7_2:60711514-60711533 Msa1066640:CDS 50.0%
CACCGTGATTTCGCCAAACT+CGG + chr7_2:60711519-60711538 None:intergenic 50.0%
AAAGTGGGGTCATGGTGTGA+AGG - chr7_2:60711899-60711918 Msa1066640:intron 50.0%
AAGTGGGGTCATGGTGTGAA+GGG - chr7_2:60711900-60711919 Msa1066640:intron 50.0%
! CTTTCAGGTCTTCTTCGCTG+TGG - chr7_2:60712700-60712719 Msa1066640:CDS 50.0%
! GGCTTAGGTCGCCTTATTCT+TGG + chr7_2:60713195-60713214 None:intergenic 50.0%
TGATGTCGTGACCAAGATGG+CGG - chr7_2:60713557-60713576 Msa1066640:intron 50.0%
!!! GCTACCGGCTCATGTGTTTT+TGG + chr7_2:60713835-60713854 None:intergenic 50.0%
GCTCGCTGTAACAGCAGAAA+TGG + chr7_2:60714166-60714185 None:intergenic 50.0%
AGGACCTTGGACTGCTGAAG+AGG - chr7_2:60711260-60711279 Msa1066640:CDS 55.0%
AGTGGGGTCATGGTGTGAAG+GGG - chr7_2:60711901-60711920 Msa1066640:intron 55.0%
ACGTGGACCCTTTACTCCTG+AGG - chr7_2:60712771-60712790 Msa1066640:CDS 55.0%
! TGGCTCAATGGGAGAGTGCA+AGG - chr7_2:60713911-60713930 Msa1066640:intron 55.0%
TGTCTCTGCAACTGCGGTCG+AGG + chr7_2:60713527-60713546 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 60711189 60714311 60711189 ID=Msa1066640;Name=Msa1066640
chr7_2 mRNA 60711189 60714311 60711189 ID=Msa1066640-mRNA-1;Parent=Msa1066640;Name=Msa1066640-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0.2|0.8|0.5|0.4|5|0|258
chr7_2 exon 60714146 60714311 60714146 ID=Msa1066640-mRNA-1:exon:12039;Parent=Msa1066640-mRNA-1
chr7_2 exon 60712664 60712793 60712664 ID=Msa1066640-mRNA-1:exon:12038;Parent=Msa1066640-mRNA-1
chr7_2 exon 60711651 60711771 60711651 ID=Msa1066640-mRNA-1:exon:12037;Parent=Msa1066640-mRNA-1
chr7_2 exon 60711392 60711617 60711392 ID=Msa1066640-mRNA-1:exon:12036;Parent=Msa1066640-mRNA-1
chr7_2 exon 60711189 60711319 60711189 ID=Msa1066640-mRNA-1:exon:12035;Parent=Msa1066640-mRNA-1
chr7_2 CDS 60714146 60714311 60714146 ID=Msa1066640-mRNA-1:cds;Parent=Msa1066640-mRNA-1
chr7_2 CDS 60712664 60712793 60712664 ID=Msa1066640-mRNA-1:cds;Parent=Msa1066640-mRNA-1
chr7_2 CDS 60711651 60711771 60711651 ID=Msa1066640-mRNA-1:cds;Parent=Msa1066640-mRNA-1
chr7_2 CDS 60711392 60711617 60711392 ID=Msa1066640-mRNA-1:cds;Parent=Msa1066640-mRNA-1
chr7_2 CDS 60711189 60711319 60711189 ID=Msa1066640-mRNA-1:cds;Parent=Msa1066640-mRNA-1
Gene Sequence

>Msa1066640

CTGTTCTTGAGAAGTGAAGAGAGAAAGAAAATGGGAAGGACACCTTGTTGTGATAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAGGATGAAATTCTTGCTAACTATATTAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCCAAGATCACAGGTCTTCTTCGCTGTGGTAAGAGTTGTAGGCTTAGGTGGACCAACTATCTCAGACCTGACATTAAACGTGGACCCTTTACTCCTGAGGAAGAAAAATTAGTCATTCAGCTTCATGCTATCCTTGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCCGGAAGAACAGACAATGAGATAAAGAACTTTTGGAACACGCATTTGAAGAAACGTCTCAAAAGCCTGGGAATTGATCCAAAAACACATGAGCCGTCACGCGCATCGGTTTCAACATGTCACATGGCTCAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCAAGACTCTCAATTGAGTCATCACACTTCAACAACAATCCTAATTCCTTCACAAAAATTGATTCTTCCTCTGATTACTTTCTCCGTATATGGAACTCTGAAGTTGGAGATGCATTTCGCAAGGTTCAAAAACCAGATACAGATCATACTAACATAATCACTACGAGCAATAGTATTGTGAAAGAAGAGTTGGATTGGAAGAACTACAAGTTTTGTGCTGAAGATGTGATTCTTGAATCTGATTCATCAAGCTCCAATGACTTGCAAGATTCATCAGACACTGCTTTGCAGCTC
Protein sequence

>Msa1066640

LFLRSEERKKMGRTPCCDKKGLKKGPWTAEEDEILANYIKKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSLGIDPKTHEPSRASVSTCHMAQWESARLEAEARLSIESSHFNNNPNSFTKIDSSSDYFLRIWNSEVGDAFRKVQKPDTDHTNIITTSNSIVKEELDWKNYKFCAEDVILESDSSSSNDLQDSSDTALQL