Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068060 | KHN31358.1 | 70.149 | 335 | 68 | 5 | 14 | 316 | 34 | 368 | 8.11e-157 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068060 | sp|Q9SY66|FRS11_ARATH | 42.381 | 210 | 101 | 4 | 76 | 267 | 45 | 252 | 3.05e-46 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068060 | A0A072UI16 | 65.499 | 371 | 66 | 5 | 6 | 316 | 1 | 369 | 5.32e-157 | 463 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1068060 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068060 | MtrunA17_Chr2g0276841 | 40.724 | 221 | 111 | 4 | 69 | 271 | 60 | 278 | 3.81e-47 | 168 |
| Msa1068060 | MtrunA17_Chr2g0276841 | 60.870 | 46 | 18 | 0 | 271 | 316 | 451 | 496 | 5.26e-12 | 66.6 |
| Msa1068060 | MtrunA17_Chr2g0294841 | 39.062 | 256 | 120 | 7 | 57 | 278 | 11 | 264 | 8.66e-42 | 154 |
| Msa1068060 | MtrunA17_Chr5g0431001 | 36.000 | 250 | 130 | 8 | 78 | 299 | 60 | 307 | 1.34e-33 | 129 |
| Msa1068060 | MtrunA17_Chr5g0431001 | 70.270 | 37 | 11 | 0 | 271 | 307 | 447 | 483 | 1.06e-11 | 65.5 |
| Msa1068060 | MtrunA17_Chr2g0290391 | 35.510 | 245 | 120 | 9 | 56 | 271 | 32 | 267 | 3.58e-32 | 126 |
| Msa1068060 | MtrunA17_Chr1g0198761 | 35.023 | 217 | 116 | 5 | 78 | 271 | 46 | 260 | 5.60e-31 | 122 |
| Msa1068060 | MtrunA17_Chr1g0198761 | 71.739 | 46 | 13 | 0 | 271 | 316 | 433 | 478 | 1.14e-16 | 80.9 |
| Msa1068060 | MtrunA17_Chr3g0081281 | 40.909 | 66 | 39 | 0 | 206 | 271 | 1 | 66 | 1.67e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068060 | AT1G10240.2 | 42.381 | 210 | 101 | 4 | 76 | 267 | 45 | 252 | 3.10e-47 | 169 |
| Msa1068060 | AT1G10240.1 | 42.381 | 210 | 101 | 4 | 76 | 267 | 45 | 252 | 3.10e-47 | 169 |
| Msa1068060 | AT5G28530.3 | 34.728 | 239 | 126 | 6 | 60 | 271 | 36 | 271 | 1.42e-32 | 127 |
| Msa1068060 | AT5G28530.2 | 34.728 | 239 | 126 | 6 | 60 | 271 | 36 | 271 | 1.42e-32 | 127 |
| Msa1068060 | AT5G28530.1 | 34.728 | 239 | 126 | 6 | 60 | 271 | 36 | 271 | 1.79e-32 | 127 |
| Msa1068060 | AT5G28530.4 | 34.286 | 245 | 130 | 7 | 60 | 276 | 36 | 277 | 2.11e-32 | 127 |
| Msa1068060 | AT5G28530.5 | 34.286 | 245 | 130 | 7 | 60 | 276 | 36 | 277 | 2.15e-32 | 127 |
Find 43 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGTGTTCCCTTTAT+TGG | 0.123228 | 7_2:+63054035 | Msa1068060:CDS |
| CGAATGTCCCTTTCAATAAA+TGG | 0.156974 | 7_2:-63054518 | None:intergenic |
| TATCTTCGTGATTATTTCTT+TGG | 0.163692 | 7_2:+63055324 | Msa1068060:CDS |
| GAAGATATTGCTTTAGAAAA+TGG | 0.185026 | 7_2:+63053867 | Msa1068060:CDS |
| AAATGGTTGTTCAGAAATAA+TGG | 0.340072 | 7_2:+63053884 | Msa1068060:CDS |
| TTTAACCGACTTTGTAAAAC+AGG | 0.371626 | 7_2:+63055419 | Msa1068060:CDS |
| ATTTGAGAGAAGTGATGTTA+TGG | 0.378695 | 7_2:+63054568 | Msa1068060:CDS |
| TAGAGCCTCCTTGAAATTCA+TGG | 0.405110 | 7_2:+63054199 | Msa1068060:CDS |
| GTATGAAATCAGAAACTATT+GGG | 0.418531 | 7_2:+63055293 | Msa1068060:intron |
| GTAGATTCACAAACAAGAAT+GGG | 0.422387 | 7_2:+63054138 | Msa1068060:CDS |
| TGTATGAAATCAGAAACTAT+TGG | 0.424688 | 7_2:+63055292 | Msa1068060:intron |
| CTTCGTGATTATTTCTTTGG+TGG | 0.427885 | 7_2:+63055327 | Msa1068060:CDS |
| TGATGGTTCCATGAATTTCA+AGG | 0.441442 | 7_2:-63054207 | None:intergenic |
| TTCGTGATTATTTCTTTGGT+GGG | 0.450960 | 7_2:+63055328 | Msa1068060:CDS |
| ATTAATACTCTCCGATCTTC+CGG | 0.458636 | 7_2:-63055361 | None:intergenic |
| GGTAGATTCACAAACAAGAA+TGG | 0.461401 | 7_2:+63054137 | Msa1068060:CDS |
| AATGAAGAAGGTGATAAAGA+TGG | 0.470337 | 7_2:+63053999 | Msa1068060:intron |
| TAACCTTCCATTTATTGAAA+GGG | 0.475583 | 7_2:+63054511 | Msa1068060:CDS |
| TTTAGTGAAAGACTTGTTAG+TGG | 0.484941 | 7_2:+63053917 | Msa1068060:CDS |
| GTAGATGATAAAGAACATAA+TGG | 0.487034 | 7_2:+63053782 | None:intergenic |
| GTAACCTTCCATTTATTGAA+AGG | 0.500947 | 7_2:+63054510 | Msa1068060:CDS |
| GAAGGTGATAAAGATGGGTC+TGG | 0.517282 | 7_2:+63054005 | Msa1068060:intron |
| GTTGTAACTCGCCACTCAGT+TGG | 0.517634 | 7_2:-63054314 | None:intergenic |
| AGAGCAGAGAAATAGAGAAT+CGG | 0.530469 | 7_2:+63054232 | Msa1068060:CDS |
| TTGTTAGTGGTTGATAACAT+AGG | 0.538715 | 7_2:+63053930 | Msa1068060:CDS |
| ACAAGAATGGGGTTATGAGC+AGG | 0.542872 | 7_2:+63054150 | Msa1068060:CDS |
| ATGAAGAAGGTGATAAAGAT+GGG | 0.545139 | 7_2:+63054000 | Msa1068060:intron |
| GATGACAACCACCGGAAGAT+CGG | 0.546284 | 7_2:+63055350 | Msa1068060:CDS |
| TCAGAGATAGTTCGATAAGC+CGG | 0.569841 | 7_2:-63054392 | None:intergenic |
| CTGATTGGTTTAGCAAACCA+TGG | 0.574779 | 7_2:-63054355 | None:intergenic |
| TGTCCCTTTCAATAAATGGA+AGG | 0.578784 | 7_2:-63054514 | None:intergenic |
| ATACACTTGATGAGGAAAGA+AGG | 0.579288 | 7_2:+63054648 | Msa1068060:CDS |
| TTTGGTGGGATGACAACCAC+CGG | 0.581206 | 7_2:+63055342 | Msa1068060:CDS |
| AAGAGATATGCTTATCAACA+AGG | 0.596535 | 7_2:+63054098 | Msa1068060:CDS |
| TTTGTTGTTGAACATAACCA+TGG | 0.597979 | 7_2:+63054338 | Msa1068060:CDS |
| AATACTCTCCGATCTTCCGG+TGG | 0.600856 | 7_2:-63055358 | None:intergenic |
| ATATGCATATACACTTGATG+AGG | 0.621673 | 7_2:+63054640 | Msa1068060:CDS |
| GGATCTTCTGAAGTATTGCG+AGG | 0.640419 | 7_2:+63054589 | Msa1068060:CDS |
| AGAGATATGCTTATCAACAA+GGG | 0.641950 | 7_2:+63054099 | Msa1068060:CDS |
| ATGATATATTTCCAACTGAG+TGG | 0.655744 | 7_2:+63054303 | Msa1068060:CDS |
| TGGTTTGCTAAACCAATCAG+AGG | 0.671864 | 7_2:+63054358 | Msa1068060:CDS |
| TAGATTCACAAACAAGAATG+GGG | 0.673558 | 7_2:+63054139 | Msa1068060:CDS |
| TGGTTCCATGAATTTCAAGG+AGG | 0.710462 | 7_2:-63054204 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTATTTTTTTATTAAAAAA+AGG | + | chr7_2:63054428-63054447 | Msa1068060:intron | 10.0% |
| !!! | ATTTTTTTATTAAAAAAAGG+TGG | + | chr7_2:63054431-63054450 | Msa1068060:intron | 10.0% |
| !!! | CGTATTTTTTTATTAAAAAA+AGG | + | chr7_2:63054428-63054447 | Msa1068060:intron | 10.0% |
| !!! | ATTTTTTTATTAAAAAAAGG+TGG | + | chr7_2:63054431-63054450 | Msa1068060:intron | 10.0% |
| !!! | ATCAAAACTTATTTTATTGT+TGG | - | chr7_2:63053829-63053848 | None:intergenic | 15.0% |
| !!! | ATCAAAACTTATTTTATTGT+TGG | - | chr7_2:63053829-63053848 | None:intergenic | 15.0% |
| !! | AATATTGTAACAAATGAAGA+AGG | + | chr7_2:63053987-63054006 | Msa1068060:intron | 20.0% |
| !! | AGAAAAATTTGACCAATAAA+GGG | - | chr7_2:63054050-63054069 | None:intergenic | 20.0% |
| !! | AAGAAAAATTTGACCAATAA+AGG | - | chr7_2:63054051-63054070 | None:intergenic | 20.0% |
| !! | TTAATAAAAAAATACGCTCA+CGG | - | chr7_2:63054424-63054443 | None:intergenic | 20.0% |
| !! | AACGCATATGTATATAAAAA+AGG | - | chr7_2:63054936-63054955 | None:intergenic | 20.0% |
| !!! | TTTTTATGAGTTGTATAAGT+TGG | + | chr7_2:63055188-63055207 | Msa1068060:intron | 20.0% |
| !! | AATATTGTAACAAATGAAGA+AGG | + | chr7_2:63053987-63054006 | Msa1068060:intron | 20.0% |
| !! | AGAAAAATTTGACCAATAAA+GGG | - | chr7_2:63054050-63054069 | None:intergenic | 20.0% |
| !! | AAGAAAAATTTGACCAATAA+AGG | - | chr7_2:63054051-63054070 | None:intergenic | 20.0% |
| !! | TTAATAAAAAAATACGCTCA+CGG | - | chr7_2:63054424-63054443 | None:intergenic | 20.0% |
| !! | AACGCATATGTATATAAAAA+AGG | - | chr7_2:63054936-63054955 | None:intergenic | 20.0% |
| !!! | TTTTTATGAGTTGTATAAGT+TGG | + | chr7_2:63055188-63055207 | Msa1068060:intron | 20.0% |
| !!! | GAAGATATTGCTTTAGAAAA+TGG | + | chr7_2:63053867-63053886 | Msa1068060:CDS | 25.0% |
| ! | AAATGGTTGTTCAGAAATAA+TGG | + | chr7_2:63053884-63053903 | Msa1068060:CDS | 25.0% |
| ! | ATTAAAAAAAGGTGGTCTTT+CGG | + | chr7_2:63054439-63054458 | Msa1068060:intron | 25.0% |
| ! | TAACCTTCCATTTATTGAAA+GGG | + | chr7_2:63054511-63054530 | Msa1068060:CDS | 25.0% |
| ! | TTTGATTGGTACCAAAAATA+TGG | + | chr7_2:63054704-63054723 | Msa1068060:intron | 25.0% |
| ! | TGTATTTGATACTACATACA+AGG | + | chr7_2:63054736-63054755 | Msa1068060:intron | 25.0% |
| ! | AATTCTTATGAAATGCCATT+TGG | + | chr7_2:63054761-63054780 | Msa1068060:intron | 25.0% |
| !!! | TAACTTTCAAGTTTAGTTCT+TGG | + | chr7_2:63055121-63055140 | Msa1068060:intron | 25.0% |
| ! | TTGTATTTAGCAACAACATT+TGG | - | chr7_2:63055243-63055262 | None:intergenic | 25.0% |
| ! | TGTATGAAATCAGAAACTAT+TGG | + | chr7_2:63055292-63055311 | Msa1068060:intron | 25.0% |
| ! | GTATGAAATCAGAAACTATT+GGG | + | chr7_2:63055293-63055312 | Msa1068060:intron | 25.0% |
| !! | TATCTTCGTGATTATTTCTT+TGG | + | chr7_2:63055324-63055343 | Msa1068060:CDS | 25.0% |
| !!! | GAAGATATTGCTTTAGAAAA+TGG | + | chr7_2:63053867-63053886 | Msa1068060:CDS | 25.0% |
| ! | AAATGGTTGTTCAGAAATAA+TGG | + | chr7_2:63053884-63053903 | Msa1068060:CDS | 25.0% |
| ! | ATTAAAAAAAGGTGGTCTTT+CGG | + | chr7_2:63054439-63054458 | Msa1068060:intron | 25.0% |
| ! | TAACCTTCCATTTATTGAAA+GGG | + | chr7_2:63054511-63054530 | Msa1068060:CDS | 25.0% |
| ! | TTTGATTGGTACCAAAAATA+TGG | + | chr7_2:63054704-63054723 | Msa1068060:intron | 25.0% |
| ! | TGTATTTGATACTACATACA+AGG | + | chr7_2:63054736-63054755 | Msa1068060:intron | 25.0% |
| ! | AATTCTTATGAAATGCCATT+TGG | + | chr7_2:63054761-63054780 | Msa1068060:intron | 25.0% |
| !!! | TAACTTTCAAGTTTAGTTCT+TGG | + | chr7_2:63055121-63055140 | Msa1068060:intron | 25.0% |
| ! | TTGTATTTAGCAACAACATT+TGG | - | chr7_2:63055243-63055262 | None:intergenic | 25.0% |
| ! | TGTATGAAATCAGAAACTAT+TGG | + | chr7_2:63055292-63055311 | Msa1068060:intron | 25.0% |
| ! | GTATGAAATCAGAAACTATT+GGG | + | chr7_2:63055293-63055312 | Msa1068060:intron | 25.0% |
| !! | TATCTTCGTGATTATTTCTT+TGG | + | chr7_2:63055324-63055343 | Msa1068060:CDS | 25.0% |
| !! | TTTAGTGAAAGACTTGTTAG+TGG | + | chr7_2:63053917-63053936 | Msa1068060:CDS | 30.0% |
| !! | TTGTTAGTGGTTGATAACAT+AGG | + | chr7_2:63053930-63053949 | Msa1068060:CDS | 30.0% |
| AATGAAGAAGGTGATAAAGA+TGG | + | chr7_2:63053999-63054018 | Msa1068060:intron | 30.0% | |
| ATGAAGAAGGTGATAAAGAT+GGG | + | chr7_2:63054000-63054019 | Msa1068060:intron | 30.0% | |
| ACAAATTGTGTTCCCTTTAT+TGG | + | chr7_2:63054035-63054054 | Msa1068060:CDS | 30.0% | |
| AAGAGATATGCTTATCAACA+AGG | + | chr7_2:63054098-63054117 | Msa1068060:CDS | 30.0% | |
| AGAGATATGCTTATCAACAA+GGG | + | chr7_2:63054099-63054118 | Msa1068060:CDS | 30.0% | |
| CAAGGGTTCTCAATAAAAAA+AGG | + | chr7_2:63054116-63054135 | Msa1068060:CDS | 30.0% | |
| GTAGATTCACAAACAAGAAT+GGG | + | chr7_2:63054138-63054157 | Msa1068060:CDS | 30.0% | |
| TAGATTCACAAACAAGAATG+GGG | + | chr7_2:63054139-63054158 | Msa1068060:CDS | 30.0% | |
| ATGATATATTTCCAACTGAG+TGG | + | chr7_2:63054303-63054322 | Msa1068060:CDS | 30.0% | |
| !! | TTTGTTGTTGAACATAACCA+TGG | + | chr7_2:63054338-63054357 | Msa1068060:CDS | 30.0% |
| GTAACCTTCCATTTATTGAA+AGG | + | chr7_2:63054510-63054529 | Msa1068060:CDS | 30.0% | |
| ATTTGAGAGAAGTGATGTTA+TGG | + | chr7_2:63054568-63054587 | Msa1068060:CDS | 30.0% | |
| ATATGCATATACACTTGATG+AGG | + | chr7_2:63054640-63054659 | Msa1068060:CDS | 30.0% | |
| !! | AATGCCATTTGGAATTTTTG+TGG | + | chr7_2:63054772-63054791 | Msa1068060:intron | 30.0% |
| !! | ATGCCATTTGGAATTTTTGT+GGG | + | chr7_2:63054773-63054792 | Msa1068060:intron | 30.0% |
| ATACCCACAAAAATTCCAAA+TGG | - | chr7_2:63054779-63054798 | None:intergenic | 30.0% | |
| TTTGTGGGTATGAATAATCA+TGG | + | chr7_2:63054788-63054807 | Msa1068060:intron | 30.0% | |
| TGATCGGTTAATATAGTCTT+TGG | - | chr7_2:63055030-63055049 | None:intergenic | 30.0% | |
| TATTAACCGATCAAGATCTA+TGG | + | chr7_2:63055037-63055056 | Msa1068060:intron | 30.0% | |
| TTTCATCCATAGATCTTGAT+CGG | - | chr7_2:63055046-63055065 | None:intergenic | 30.0% | |
| TTCGAGACAAATATGCAAAA+TGG | + | chr7_2:63055157-63055176 | Msa1068060:intron | 30.0% | |
| CAGTCAAATAAACATGTGAA+AGG | + | chr7_2:63055267-63055286 | Msa1068060:intron | 30.0% | |
| ! | TTCGTGATTATTTCTTTGGT+GGG | + | chr7_2:63055328-63055347 | Msa1068060:CDS | 30.0% |
| !! | TTTAGTGAAAGACTTGTTAG+TGG | + | chr7_2:63053917-63053936 | Msa1068060:CDS | 30.0% |
| !! | TTGTTAGTGGTTGATAACAT+AGG | + | chr7_2:63053930-63053949 | Msa1068060:CDS | 30.0% |
| AATGAAGAAGGTGATAAAGA+TGG | + | chr7_2:63053999-63054018 | Msa1068060:intron | 30.0% | |
| ATGAAGAAGGTGATAAAGAT+GGG | + | chr7_2:63054000-63054019 | Msa1068060:intron | 30.0% | |
| ACAAATTGTGTTCCCTTTAT+TGG | + | chr7_2:63054035-63054054 | Msa1068060:CDS | 30.0% | |
| AAGAGATATGCTTATCAACA+AGG | + | chr7_2:63054098-63054117 | Msa1068060:CDS | 30.0% | |
| AGAGATATGCTTATCAACAA+GGG | + | chr7_2:63054099-63054118 | Msa1068060:CDS | 30.0% | |
| CAAGGGTTCTCAATAAAAAA+AGG | + | chr7_2:63054116-63054135 | Msa1068060:CDS | 30.0% | |
| GTAGATTCACAAACAAGAAT+GGG | + | chr7_2:63054138-63054157 | Msa1068060:CDS | 30.0% | |
| TAGATTCACAAACAAGAATG+GGG | + | chr7_2:63054139-63054158 | Msa1068060:CDS | 30.0% | |
| ATGATATATTTCCAACTGAG+TGG | + | chr7_2:63054303-63054322 | Msa1068060:CDS | 30.0% | |
| !! | TTTGTTGTTGAACATAACCA+TGG | + | chr7_2:63054338-63054357 | Msa1068060:CDS | 30.0% |
| GTAACCTTCCATTTATTGAA+AGG | + | chr7_2:63054510-63054529 | Msa1068060:CDS | 30.0% | |
| ATTTGAGAGAAGTGATGTTA+TGG | + | chr7_2:63054568-63054587 | Msa1068060:CDS | 30.0% | |
| ATATGCATATACACTTGATG+AGG | + | chr7_2:63054640-63054659 | Msa1068060:CDS | 30.0% | |
| !! | AATGCCATTTGGAATTTTTG+TGG | + | chr7_2:63054772-63054791 | Msa1068060:intron | 30.0% |
| !! | ATGCCATTTGGAATTTTTGT+GGG | + | chr7_2:63054773-63054792 | Msa1068060:intron | 30.0% |
| ATACCCACAAAAATTCCAAA+TGG | - | chr7_2:63054779-63054798 | None:intergenic | 30.0% | |
| TTTGTGGGTATGAATAATCA+TGG | + | chr7_2:63054788-63054807 | Msa1068060:intron | 30.0% | |
| TGATCGGTTAATATAGTCTT+TGG | - | chr7_2:63055030-63055049 | None:intergenic | 30.0% | |
| TATTAACCGATCAAGATCTA+TGG | + | chr7_2:63055037-63055056 | Msa1068060:intron | 30.0% | |
| TTTCATCCATAGATCTTGAT+CGG | - | chr7_2:63055046-63055065 | None:intergenic | 30.0% | |
| TTCGAGACAAATATGCAAAA+TGG | + | chr7_2:63055157-63055176 | Msa1068060:intron | 30.0% | |
| CAGTCAAATAAACATGTGAA+AGG | + | chr7_2:63055267-63055286 | Msa1068060:intron | 30.0% | |
| ! | TTCGTGATTATTTCTTTGGT+GGG | + | chr7_2:63055328-63055347 | Msa1068060:CDS | 30.0% |
| GGTAGATTCACAAACAAGAA+TGG | + | chr7_2:63054137-63054156 | Msa1068060:CDS | 35.0% | |
| !!! | GATTTTTTTTGCCATCGTGA+AGG | + | chr7_2:63054176-63054195 | Msa1068060:intron | 35.0% |
| TGATGGTTCCATGAATTTCA+AGG | - | chr7_2:63054210-63054229 | None:intergenic | 35.0% | |
| !! | CTATTTCTCTGCTCTTTTGA+TGG | - | chr7_2:63054227-63054246 | None:intergenic | 35.0% |
| AGAGCAGAGAAATAGAGAAT+CGG | + | chr7_2:63054232-63054251 | Msa1068060:CDS | 35.0% | |
| CTAGAGAAAAATGTGAAGCA+TGG | + | chr7_2:63054488-63054507 | Msa1068060:CDS | 35.0% | |
| TGTCCCTTTCAATAAATGGA+AGG | - | chr7_2:63054517-63054536 | None:intergenic | 35.0% | |
| CGAATGTCCCTTTCAATAAA+TGG | - | chr7_2:63054521-63054540 | None:intergenic | 35.0% | |
| ATACACTTGATGAGGAAAGA+AGG | + | chr7_2:63054648-63054667 | Msa1068060:CDS | 35.0% | |
| !!! | GAAGGTTGGAGCATATTTTT+TGG | + | chr7_2:63054666-63054685 | Msa1068060:intron | 35.0% |
| !!! | GGAGCATATTTTTTGGTCAT+CGG | + | chr7_2:63054673-63054692 | Msa1068060:intron | 35.0% |
| ! | CAACAACATCGCCATATTTT+TGG | - | chr7_2:63054718-63054737 | None:intergenic | 35.0% |
| ! | TTTTTGGATGTGCACTCTTA+CGG | + | chr7_2:63054822-63054841 | Msa1068060:intron | 35.0% |
| TCGGTTAATATAGTCTTTGG+TGG | - | chr7_2:63055027-63055046 | None:intergenic | 35.0% | |
| CAAAACACAGTTTCTGCATA+TGG | + | chr7_2:63055094-63055113 | Msa1068060:intron | 35.0% | |
| TGCATATTTGTCTCGAAGTA+TGG | - | chr7_2:63055154-63055173 | None:intergenic | 35.0% | |
| GTGAAGAATTTGAGCATCAA+TGG | + | chr7_2:63055217-63055236 | Msa1068060:intron | 35.0% | |
| ! | CTTCGTGATTATTTCTTTGG+TGG | + | chr7_2:63055327-63055346 | Msa1068060:CDS | 35.0% |
| ATTAATACTCTCCGATCTTC+CGG | - | chr7_2:63055364-63055383 | None:intergenic | 35.0% | |
| GGTAGATTCACAAACAAGAA+TGG | + | chr7_2:63054137-63054156 | Msa1068060:CDS | 35.0% | |
| !!! | GATTTTTTTTGCCATCGTGA+AGG | + | chr7_2:63054176-63054195 | Msa1068060:intron | 35.0% |
| TGATGGTTCCATGAATTTCA+AGG | - | chr7_2:63054210-63054229 | None:intergenic | 35.0% | |
| !! | CTATTTCTCTGCTCTTTTGA+TGG | - | chr7_2:63054227-63054246 | None:intergenic | 35.0% |
| AGAGCAGAGAAATAGAGAAT+CGG | + | chr7_2:63054232-63054251 | Msa1068060:CDS | 35.0% | |
| CTAGAGAAAAATGTGAAGCA+TGG | + | chr7_2:63054488-63054507 | Msa1068060:CDS | 35.0% | |
| TGTCCCTTTCAATAAATGGA+AGG | - | chr7_2:63054517-63054536 | None:intergenic | 35.0% | |
| CGAATGTCCCTTTCAATAAA+TGG | - | chr7_2:63054521-63054540 | None:intergenic | 35.0% | |
| ATACACTTGATGAGGAAAGA+AGG | + | chr7_2:63054648-63054667 | Msa1068060:CDS | 35.0% | |
| !!! | GAAGGTTGGAGCATATTTTT+TGG | + | chr7_2:63054666-63054685 | Msa1068060:intron | 35.0% |
| !!! | GGAGCATATTTTTTGGTCAT+CGG | + | chr7_2:63054673-63054692 | Msa1068060:intron | 35.0% |
| ! | CAACAACATCGCCATATTTT+TGG | - | chr7_2:63054718-63054737 | None:intergenic | 35.0% |
| ! | TTTTTGGATGTGCACTCTTA+CGG | + | chr7_2:63054822-63054841 | Msa1068060:intron | 35.0% |
| TCGGTTAATATAGTCTTTGG+TGG | - | chr7_2:63055027-63055046 | None:intergenic | 35.0% | |
| CAAAACACAGTTTCTGCATA+TGG | + | chr7_2:63055094-63055113 | Msa1068060:intron | 35.0% | |
| TGCATATTTGTCTCGAAGTA+TGG | - | chr7_2:63055154-63055173 | None:intergenic | 35.0% | |
| GTGAAGAATTTGAGCATCAA+TGG | + | chr7_2:63055217-63055236 | Msa1068060:intron | 35.0% | |
| ! | CTTCGTGATTATTTCTTTGG+TGG | + | chr7_2:63055327-63055346 | Msa1068060:CDS | 35.0% |
| ATTAATACTCTCCGATCTTC+CGG | - | chr7_2:63055364-63055383 | None:intergenic | 35.0% | |
| TAGAGCCTCCTTGAAATTCA+TGG | + | chr7_2:63054199-63054218 | Msa1068060:CDS | 40.0% | |
| TGGTTCCATGAATTTCAAGG+AGG | - | chr7_2:63054207-63054226 | None:intergenic | 40.0% | |
| !! | CTGATTGGTTTAGCAAACCA+TGG | - | chr7_2:63054358-63054377 | None:intergenic | 40.0% |
| !! | TGGTTTGCTAAACCAATCAG+AGG | + | chr7_2:63054358-63054377 | Msa1068060:CDS | 40.0% |
| GTAAAAAACGCACCTCTGAT+TGG | - | chr7_2:63054373-63054392 | None:intergenic | 40.0% | |
| !!! | ATCAGAGGTGCGTTTTTTAC+CGG | + | chr7_2:63054373-63054392 | Msa1068060:CDS | 40.0% |
| TCAGAGATAGTTCGATAAGC+CGG | - | chr7_2:63054395-63054414 | None:intergenic | 40.0% | |
| ACTTGATGAGGAAAGAAGGT+TGG | + | chr7_2:63054652-63054671 | Msa1068060:intron | 40.0% | |
| !!! | CATCGGCTTCTTGTTTTGAT+TGG | + | chr7_2:63054690-63054709 | Msa1068060:intron | 40.0% |
| ! | CATGGAAAGACCGTACTTTT+TGG | + | chr7_2:63054806-63054825 | Msa1068060:intron | 40.0% |
| GAGTGCACATCCAAAAAGTA+CGG | - | chr7_2:63054819-63054838 | None:intergenic | 40.0% | |
| AAACTGTGTCTGCATTTCGT+TGG | + | chr7_2:63054849-63054868 | Msa1068060:intron | 40.0% | |
| ! | TGCATTTCGTTGGCTAATGA+AGG | + | chr7_2:63054859-63054878 | Msa1068060:intron | 40.0% |
| TAGAGCCTCCTTGAAATTCA+TGG | + | chr7_2:63054199-63054218 | Msa1068060:CDS | 40.0% | |
| TGGTTCCATGAATTTCAAGG+AGG | - | chr7_2:63054207-63054226 | None:intergenic | 40.0% | |
| !! | CTGATTGGTTTAGCAAACCA+TGG | - | chr7_2:63054358-63054377 | None:intergenic | 40.0% |
| !! | TGGTTTGCTAAACCAATCAG+AGG | + | chr7_2:63054358-63054377 | Msa1068060:CDS | 40.0% |
| GTAAAAAACGCACCTCTGAT+TGG | - | chr7_2:63054373-63054392 | None:intergenic | 40.0% | |
| !!! | ATCAGAGGTGCGTTTTTTAC+CGG | + | chr7_2:63054373-63054392 | Msa1068060:CDS | 40.0% |
| TCAGAGATAGTTCGATAAGC+CGG | - | chr7_2:63054395-63054414 | None:intergenic | 40.0% | |
| ACTTGATGAGGAAAGAAGGT+TGG | + | chr7_2:63054652-63054671 | Msa1068060:intron | 40.0% | |
| !!! | CATCGGCTTCTTGTTTTGAT+TGG | + | chr7_2:63054690-63054709 | Msa1068060:intron | 40.0% |
| ! | CATGGAAAGACCGTACTTTT+TGG | + | chr7_2:63054806-63054825 | Msa1068060:intron | 40.0% |
| GAGTGCACATCCAAAAAGTA+CGG | - | chr7_2:63054819-63054838 | None:intergenic | 40.0% | |
| AAACTGTGTCTGCATTTCGT+TGG | + | chr7_2:63054849-63054868 | Msa1068060:intron | 40.0% | |
| ! | TGCATTTCGTTGGCTAATGA+AGG | + | chr7_2:63054859-63054878 | Msa1068060:intron | 40.0% |
| GAAGGTGATAAAGATGGGTC+TGG | + | chr7_2:63054005-63054024 | Msa1068060:intron | 45.0% | |
| ACAAGAATGGGGTTATGAGC+AGG | + | chr7_2:63054150-63054169 | Msa1068060:CDS | 45.0% | |
| !! | GGATCTTCTGAAGTATTGCG+AGG | + | chr7_2:63054589-63054608 | Msa1068060:CDS | 45.0% |
| GAAGGTGATAAAGATGGGTC+TGG | + | chr7_2:63054005-63054024 | Msa1068060:intron | 45.0% | |
| ACAAGAATGGGGTTATGAGC+AGG | + | chr7_2:63054150-63054169 | Msa1068060:CDS | 45.0% | |
| !! | GGATCTTCTGAAGTATTGCG+AGG | + | chr7_2:63054589-63054608 | Msa1068060:CDS | 45.0% |
| GTTGTAACTCGCCACTCAGT+TGG | - | chr7_2:63054317-63054336 | None:intergenic | 50.0% | |
| TTTGGTGGGATGACAACCAC+CGG | + | chr7_2:63055342-63055361 | Msa1068060:CDS | 50.0% | |
| GATGACAACCACCGGAAGAT+CGG | + | chr7_2:63055350-63055369 | Msa1068060:CDS | 50.0% | |
| AATACTCTCCGATCTTCCGG+TGG | - | chr7_2:63055361-63055380 | None:intergenic | 50.0% | |
| GTTGTAACTCGCCACTCAGT+TGG | - | chr7_2:63054317-63054336 | None:intergenic | 50.0% | |
| TTTGGTGGGATGACAACCAC+CGG | + | chr7_2:63055342-63055361 | Msa1068060:CDS | 50.0% | |
| GATGACAACCACCGGAAGAT+CGG | + | chr7_2:63055350-63055369 | Msa1068060:CDS | 50.0% | |
| AATACTCTCCGATCTTCCGG+TGG | - | chr7_2:63055361-63055380 | None:intergenic | 50.0% | |
| AGGAGGCTCTACCTTCACGA+TGG | - | chr7_2:63054190-63054209 | None:intergenic | 55.0% | |
| AGGAGGCTCTACCTTCACGA+TGG | - | chr7_2:63054190-63054209 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 63053786 | 63055440 | 63053786 | ID=Msa1068060;Name=Msa1068060 |
| chr7_2 | mRNA | 63053786 | 63055440 | 63053786 | ID=Msa1068060-mRNA-1;Parent=Msa1068060;Name=Msa1068060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|5|0|316 |
| chr7_2 | exon | 63053786 | 63053981 | 63053786 | ID=Msa1068060-mRNA-1:exon:12920;Parent=Msa1068060-mRNA-1 |
| chr7_2 | exon | 63054009 | 63054173 | 63054009 | ID=Msa1068060-mRNA-1:exon:12921;Parent=Msa1068060-mRNA-1 |
| chr7_2 | exon | 63054198 | 63054428 | 63054198 | ID=Msa1068060-mRNA-1:exon:12922;Parent=Msa1068060-mRNA-1 |
| chr7_2 | exon | 63054450 | 63054669 | 63054450 | ID=Msa1068060-mRNA-1:exon:12923;Parent=Msa1068060-mRNA-1 |
| chr7_2 | exon | 63055305 | 63055440 | 63055305 | ID=Msa1068060-mRNA-1:exon:12924;Parent=Msa1068060-mRNA-1 |
| chr7_2 | CDS | 63053786 | 63053981 | 63053786 | ID=Msa1068060-mRNA-1:cds;Parent=Msa1068060-mRNA-1 |
| chr7_2 | CDS | 63054009 | 63054173 | 63054009 | ID=Msa1068060-mRNA-1:cds;Parent=Msa1068060-mRNA-1 |
| chr7_2 | CDS | 63054198 | 63054428 | 63054198 | ID=Msa1068060-mRNA-1:cds;Parent=Msa1068060-mRNA-1 |
| chr7_2 | CDS | 63054450 | 63054669 | 63054450 | ID=Msa1068060-mRNA-1:cds;Parent=Msa1068060-mRNA-1 |
| chr7_2 | CDS | 63055305 | 63055440 | 63055305 | ID=Msa1068060-mRNA-1:cds;Parent=Msa1068060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
