AlfalfaGEDB | Msa1069110

M. sativa cultivar zhongmu-4 / Msa1069110

KEGG: K04733
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069110	RHN47261.1	83.036	112	19	0	1	112	97	208	1.34e-64	206

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069110	sp\|Q9FID6\|Y5392_ARATH	50.893	112	55	0	1	112	663	774	3.40e-35	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069110	A0A396H438	83.036	112	19	0	1	112	97	208	6.39e-65	206

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069110	MtrunA17_Chr7g0251031	83.036	112	19	0	1	112	97	208	1.23e-68	206
Msa1069110	MtrunA17_Chr7g0251001	84.821	112	17	0	1	112	230	341	3.12e-68	209
Msa1069110	MtrunA17_Chr7g0251081	83.929	112	17	1	1	112	280	390	9.50e-66	203
Msa1069110	MtrunA17_Chr7g0251071	85.714	112	16	0	1	112	524	635	2.65e-65	208
Msa1069110	MtrunA17_Chr1g0212821	84.821	112	16	1	1	112	253	363	1.31e-64	200
Msa1069110	MtrunA17_Chr7g0251101	83.929	112	17	1	1	112	530	640	8.65e-64	204
Msa1069110	MtrunA17_Chr7g0251051	83.929	112	17	1	1	112	484	594	1.92e-62	200
Msa1069110	MtrunA17_Chr7g0253471	78.571	112	22	1	1	112	53	162	3.70e-62	187
Msa1069110	MtrunA17_Chr4g0022301	74.107	112	28	1	1	112	11	121	6.45e-60	180
Msa1069110	MtrunA17_Chr7g0251061	83.036	112	18	1	1	112	519	629	8.78e-60	194

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069110	AT1G70250.1	55.652	115	48	2	1	112	627	741	9.32e-38	134
Msa1069110	AT5G39020.1	50.893	112	55	0	1	112	663	774	3.46e-36	130
Msa1069110	AT5G38280.1	50.877	114	54	1	1	112	499	612	2.52e-34	124
Msa1069110	AT5G38280.2	50.877	114	54	1	1	112	499	612	2.91e-34	124
Msa1069110	AT5G39030.2	49.123	114	56	1	1	112	659	772	2.49e-33	122
Msa1069110	AT5G39030.1	49.123	114	56	1	1	112	665	778	2.80e-33	122
Msa1069110	AT4G18250.1	54.955	111	46	2	1	107	524	634	2.98e-33	121
Msa1069110	AT1G67000.1	49.593	123	51	3	1	112	724	846	7.48e-33	120
Msa1069110	AT5G38260.1	49.550	111	54	1	1	109	488	598	2.09e-32	119
Msa1069110	AT1G66980.1	44.348	115	61	1	1	112	972	1086	9.46e-32	117

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Find 19 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTATGACACTGGA+GGG	0.635025	7_2:-64648643	Msa1069110:CDS
AAAGTAATAGAAATGTTGCA+AGG	0.635186	7_2:-64648443	Msa1069110:CDS
AAGTCTGATATATATAGCTT+TGG	0.485637	7_2:-64648695	Msa1069110:CDS
AATGCTCTGCTAAATACTTC+TGG	0.396151	7_2:+64648734	None:intergenic
ATATTACTCTGGTGAATCTG+TGG	0.632628	7_2:-64648505	Msa1069110:CDS
ATGTTGATTCTTGAAATGAT+CGG	0.653277	7_2:-64648671	Msa1069110:CDS
ATTTATAAGGATCTTGAGCA+AGG	0.571114	7_2:-64648587	Msa1069110:CDS
ATTTCTATTACTTTATCCAT+CGG	0.514398	7_2:+64648452	None:intergenic
CTCAGAGGAAGAAAATGATA+TGG	0.437776	7_2:-64648534	Msa1069110:CDS
GAAGTATTTAGCAGAGCATT+TGG	0.366748	7_2:-64648731	Msa1069110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTATAAGGATCTTGAGCA+AGG	-	chr7_2:64648577-64648596	Msa1069110:CDS	30.0%
TTTATAAGGATCTTGAGCAA+GGG	-	chr7_2:64648578-64648597	Msa1069110:CDS	30.0%
AATGCTCTGCTAAATACTTC+TGG	+	chr7_2:64648433-64648452	None:intergenic	35.0%
TTGATTCTTGAAATGATCGG+AGG	-	chr7_2:64648496-64648515	Msa1069110:CDS	35.0%
GGAAAAAAGAACTATGACAC+TGG	-	chr7_2:64648517-64648536	Msa1069110:CDS	35.0%
AAAAAGAACTATGACACTGG+AGG	-	chr7_2:64648520-64648539	Msa1069110:CDS	35.0%
AAAAGAACTATGACACTGGA+GGG	-	chr7_2:64648521-64648540	Msa1069110:CDS	35.0%
TAATTGTTTGACAGTCTCAG+AGG	-	chr7_2:64648615-64648634	Msa1069110:CDS	35.0%
CTCAGAGGAAGAAAATGATA+TGG	-	chr7_2:64648630-64648649	Msa1069110:CDS	35.0%
ATATTACTCTGGTGAATCTG+TGG	-	chr7_2:64648659-64648678	Msa1069110:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	64648424	64648762	64648424	ID=Msa1069110;Name=Msa1069110
chr7_2	mRNA	64648424	64648762	64648424	ID=Msa1069110-mRNA-1;Parent=Msa1069110;Name=Msa1069110-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|112
chr7_2	exon	64648424	64648762	64648424	ID=Msa1069110-mRNA-1:exon:13494;Parent=Msa1069110-mRNA-1
chr7_2	CDS	64648424	64648762	64648424	ID=Msa1069110-mRNA-1:cds;Parent=Msa1069110-mRNA-1

Gene Sequence	>Msa1069110 ATGGCGCCAGAAGTATTTAGCAGAGCATTTGGTGGAGTTTCTTACAAGTCTGATATATATAGCTTTGGCATGTTGATTCTTGAAATGATCGGAGGAAAAAAGAACTATGACACTGGAGGGTCGTGTACTTCTGAAATGTATTTTCGAGATTGGATTTATAAGGATCTTGAGCAAGGGAATAATAACTTTTTTAATTGTTTGACAGTCTCAGAGGAAGAAAATGATATGGTTAGAAATATTACTCTGGTGAATCTGTGGTGCATTCAAACAAATCCATCAGACAGACCACCGATGGATAAAGTAATAGAAATGTTGCAAGGACCACTTTCGTCAATATAA
Protein sequence	>Msa1069110 MAPEVFSRAFGGVSYKSDIYSFGMLILEMIGGKKNYDTGGSCTSEMYFRDWIYKDLEQGNNNFFNCLTVSEEENDMVRNITLVNLWCIQTNPSDRPPMDKVIEMLQGPLSSI*