Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069570 | XP_024625181.1 | 94.382 | 178 | 10 | 0 | 1 | 178 | 87 | 264 | 2.36e-118 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069570 | sp|Q9SKN5|ARFJ_ARATH | 63.636 | 154 | 50 | 1 | 1 | 148 | 65 | 218 | 1.42e-61 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069570 | A0A396H9J8 | 94.382 | 178 | 10 | 0 | 1 | 178 | 87 | 264 | 1.43e-118 | 357 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1069570 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069570 | MtrunA17_Chr7g0264171 | 94.382 | 178 | 10 | 0 | 1 | 178 | 87 | 264 | 2.76e-122 | 357 |
| Msa1069570 | MtrunA17_Chr7g0264161 | 88.750 | 160 | 18 | 0 | 1 | 160 | 48 | 207 | 6.75e-104 | 300 |
| Msa1069570 | MtrunA17_Chr2g0326761 | 61.364 | 176 | 63 | 2 | 1 | 176 | 67 | 237 | 1.62e-66 | 215 |
| Msa1069570 | MtrunA17_Chr1g0199681 | 66.216 | 148 | 50 | 0 | 1 | 148 | 149 | 296 | 2.96e-64 | 209 |
| Msa1069570 | MtrunA17_Chr1g0181211 | 65.269 | 167 | 48 | 4 | 1 | 160 | 83 | 246 | 3.76e-63 | 206 |
| Msa1069570 | MtrunA17_Chr4g0028971 | 59.444 | 180 | 69 | 3 | 1 | 177 | 66 | 244 | 3.75e-61 | 201 |
| Msa1069570 | MtrunA17_Chr3g0115271 | 54.667 | 150 | 61 | 2 | 1 | 148 | 76 | 220 | 6.45e-49 | 166 |
| Msa1069570 | MtrunA17_Chr8g0389081 | 52.000 | 150 | 66 | 2 | 2 | 149 | 95 | 240 | 2.92e-46 | 161 |
| Msa1069570 | MtrunA17_Chr1g0156321 | 50.331 | 151 | 72 | 1 | 2 | 152 | 106 | 253 | 5.73e-46 | 160 |
| Msa1069570 | MtrunA17_Chr4g0070181 | 48.667 | 150 | 71 | 2 | 2 | 149 | 85 | 230 | 3.07e-44 | 155 |
| Msa1069570 | MtrunA17_Chr2g0301251 | 49.333 | 150 | 70 | 2 | 2 | 149 | 85 | 230 | 7.70e-44 | 154 |
| Msa1069570 | MtrunA17_Chr2g0285461 | 48.026 | 152 | 75 | 2 | 2 | 152 | 86 | 234 | 4.50e-42 | 149 |
| Msa1069570 | MtrunA17_Chr2g0282961 | 48.684 | 152 | 71 | 1 | 2 | 146 | 108 | 259 | 1.08e-41 | 147 |
| Msa1069570 | MtrunA17_Chr5g0424931 | 50.000 | 150 | 61 | 2 | 1 | 145 | 78 | 218 | 1.16e-41 | 146 |
| Msa1069570 | MtrunA17_Chr2g0276781 | 47.682 | 151 | 74 | 2 | 2 | 151 | 85 | 231 | 4.94e-41 | 146 |
| Msa1069570 | MtrunA17_Chr4g0029671 | 48.428 | 159 | 74 | 1 | 1 | 151 | 114 | 272 | 8.57e-41 | 145 |
| Msa1069570 | MtrunA17_Chr3g0109391 | 48.366 | 153 | 73 | 3 | 2 | 152 | 89 | 237 | 1.77e-40 | 145 |
| Msa1069570 | MtrunA17_Chr5g0433301 | 47.712 | 153 | 74 | 3 | 2 | 152 | 87 | 235 | 2.38e-40 | 144 |
| Msa1069570 | MtrunA17_Chr2g0289221 | 47.682 | 151 | 73 | 3 | 1 | 148 | 80 | 227 | 5.73e-40 | 139 |
| Msa1069570 | MtrunA17_Chr8g0376771 | 46.980 | 149 | 73 | 2 | 2 | 148 | 85 | 229 | 6.98e-40 | 143 |
| Msa1069570 | MtrunA17_Chr4g0046371 | 46.203 | 158 | 74 | 1 | 2 | 148 | 94 | 251 | 8.99e-40 | 142 |
| Msa1069570 | MtrunA17_Chr2g0326281 | 45.349 | 172 | 73 | 3 | 1 | 151 | 116 | 287 | 1.05e-39 | 142 |
| Msa1069570 | MtrunA17_Chr5g0417281 | 46.753 | 154 | 69 | 3 | 1 | 148 | 70 | 216 | 1.09e-39 | 140 |
| Msa1069570 | MtrunA17_Chr4g0009751 | 47.333 | 150 | 74 | 2 | 1 | 149 | 80 | 225 | 7.49e-39 | 139 |
| Msa1069570 | MtrunA17_Chr8g0385791 | 47.682 | 151 | 73 | 3 | 2 | 150 | 121 | 267 | 1.41e-38 | 139 |
| Msa1069570 | MtrunA17_Chr8g0346711 | 46.711 | 152 | 76 | 2 | 1 | 151 | 90 | 237 | 1.49e-37 | 136 |
| Msa1069570 | MtrunA17_Chr7g0239061 | 46.528 | 144 | 74 | 2 | 1 | 144 | 75 | 215 | 4.39e-37 | 135 |
| Msa1069570 | MtrunA17_Chr5g0417211 | 45.513 | 156 | 69 | 3 | 1 | 147 | 71 | 219 | 3.37e-35 | 127 |
| Msa1069570 | MtrunA17_Chr5g0436761 | 43.312 | 157 | 72 | 3 | 1 | 147 | 71 | 220 | 1.65e-32 | 120 |
| Msa1069570 | MtrunA17_Chr1g0178011 | 41.892 | 148 | 78 | 2 | 1 | 145 | 71 | 213 | 3.18e-32 | 120 |
| Msa1069570 | MtrunA17_Chr2g0277461 | 41.781 | 146 | 82 | 3 | 1 | 145 | 74 | 217 | 1.88e-31 | 117 |
| Msa1069570 | MtrunA17_Chr5g0425661 | 38.028 | 142 | 70 | 3 | 1 | 133 | 93 | 225 | 6.29e-26 | 99.4 |
| Msa1069570 | MtrunA17_Chr8g0356211 | 42.424 | 99 | 57 | 0 | 53 | 151 | 2 | 100 | 3.93e-25 | 98.6 |
| Msa1069570 | MtrunA17_Chr2g0277531 | 37.838 | 148 | 85 | 5 | 1 | 145 | 81 | 224 | 3.15e-22 | 91.3 |
| Msa1069570 | MtrunA17_Chr5g0424801 | 32.667 | 150 | 76 | 5 | 6 | 148 | 76 | 207 | 1.48e-17 | 79.0 |
| Msa1069570 | MtrunA17_Chr5g0424741 | 31.977 | 172 | 88 | 6 | 1 | 145 | 71 | 240 | 8.18e-16 | 74.3 |
| Msa1069570 | MtrunA17_Chr5g0425261 | 32.000 | 150 | 77 | 5 | 6 | 148 | 76 | 207 | 1.82e-15 | 73.2 |
| Msa1069570 | MtrunA17_Chr8g0345771 | 31.496 | 127 | 82 | 2 | 40 | 162 | 167 | 292 | 2.16e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069570 | AT2G28350.2 | 63.636 | 154 | 50 | 1 | 1 | 148 | 65 | 218 | 9.89e-63 | 205 |
| Msa1069570 | AT2G28350.1 | 63.636 | 154 | 50 | 1 | 1 | 148 | 65 | 218 | 1.44e-62 | 205 |
| Msa1069570 | AT4G30080.1 | 64.000 | 150 | 52 | 2 | 1 | 148 | 74 | 223 | 1.83e-59 | 196 |
| Msa1069570 | AT1G77850.2 | 50.000 | 148 | 72 | 1 | 1 | 146 | 73 | 220 | 6.74e-46 | 159 |
| Msa1069570 | AT1G77850.1 | 50.000 | 148 | 72 | 1 | 1 | 146 | 73 | 220 | 6.94e-46 | 159 |
| Msa1069570 | AT1G19220.1 | 50.667 | 150 | 68 | 2 | 2 | 149 | 85 | 230 | 1.46e-44 | 157 |
| Msa1069570 | AT5G20730.3 | 49.007 | 151 | 71 | 2 | 2 | 150 | 86 | 232 | 1.23e-43 | 154 |
| Msa1069570 | AT5G20730.2 | 49.007 | 151 | 71 | 2 | 2 | 150 | 86 | 232 | 1.32e-43 | 154 |
| Msa1069570 | AT5G20730.1 | 49.007 | 151 | 71 | 2 | 2 | 150 | 86 | 232 | 1.35e-43 | 154 |
| Msa1069570 | AT1G19850.1 | 49.007 | 151 | 75 | 1 | 2 | 152 | 117 | 265 | 6.25e-43 | 152 |
| Msa1069570 | AT1G19850.2 | 49.007 | 151 | 75 | 1 | 2 | 152 | 106 | 254 | 6.69e-43 | 152 |
| Msa1069570 | AT1G30330.1 | 49.669 | 151 | 74 | 2 | 2 | 152 | 86 | 234 | 2.91e-41 | 147 |
| Msa1069570 | AT1G30330.3 | 49.669 | 151 | 74 | 2 | 2 | 152 | 88 | 236 | 2.91e-41 | 147 |
| Msa1069570 | AT1G30330.2 | 49.669 | 151 | 74 | 2 | 2 | 152 | 88 | 236 | 2.91e-41 | 147 |
| Msa1069570 | AT5G60450.2 | 47.170 | 159 | 76 | 2 | 1 | 151 | 101 | 259 | 4.03e-41 | 147 |
| Msa1069570 | AT5G60450.1 | 47.170 | 159 | 76 | 2 | 1 | 151 | 125 | 283 | 4.32e-41 | 147 |
| Msa1069570 | AT5G37020.2 | 47.712 | 153 | 74 | 3 | 2 | 152 | 85 | 233 | 4.55e-41 | 147 |
| Msa1069570 | AT5G37020.1 | 47.712 | 153 | 74 | 3 | 2 | 152 | 85 | 233 | 6.18e-41 | 146 |
| Msa1069570 | AT1G59750.4 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 1.71e-40 | 144 |
| Msa1069570 | AT1G59750.2 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 1.78e-40 | 144 |
| Msa1069570 | AT1G59750.1 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 2.12e-40 | 144 |
| Msa1069570 | AT1G59750.3 | 50.000 | 150 | 72 | 3 | 2 | 151 | 84 | 230 | 2.12e-40 | 144 |
| Msa1069570 | AT2G33860.1 | 45.455 | 154 | 77 | 1 | 2 | 148 | 109 | 262 | 9.53e-40 | 142 |
| Msa1069570 | AT3G61830.2 | 44.805 | 154 | 76 | 2 | 2 | 152 | 37 | 184 | 1.82e-38 | 138 |
| Msa1069570 | AT3G61830.1 | 44.805 | 154 | 76 | 2 | 2 | 152 | 88 | 235 | 3.24e-38 | 138 |
| Msa1069570 | AT5G62000.2 | 45.695 | 151 | 76 | 2 | 2 | 150 | 123 | 269 | 1.13e-37 | 137 |
| Msa1069570 | AT5G62000.5 | 45.695 | 151 | 76 | 2 | 2 | 150 | 123 | 269 | 1.13e-37 | 137 |
| Msa1069570 | AT5G62000.3 | 45.695 | 151 | 76 | 2 | 2 | 150 | 123 | 269 | 1.13e-37 | 137 |
| Msa1069570 | AT5G62000.1 | 45.695 | 151 | 76 | 2 | 2 | 150 | 123 | 269 | 1.13e-37 | 137 |
| Msa1069570 | AT5G62000.4 | 45.695 | 151 | 76 | 2 | 2 | 150 | 123 | 269 | 1.22e-37 | 137 |
| Msa1069570 | AT5G37020.3 | 54.630 | 108 | 49 | 0 | 45 | 152 | 31 | 138 | 1.96e-37 | 136 |
| Msa1069570 | AT4G23980.2 | 46.575 | 146 | 74 | 2 | 2 | 146 | 75 | 217 | 3.20e-37 | 135 |
| Msa1069570 | AT4G23980.1 | 46.575 | 146 | 74 | 2 | 2 | 146 | 75 | 217 | 3.57e-37 | 135 |
| Msa1069570 | AT2G33860.2 | 56.731 | 104 | 45 | 0 | 45 | 148 | 2 | 105 | 5.04e-37 | 133 |
| Msa1069570 | AT2G46530.1 | 41.420 | 169 | 89 | 3 | 2 | 166 | 84 | 246 | 1.09e-36 | 134 |
| Msa1069570 | AT2G46530.3 | 41.420 | 169 | 89 | 3 | 2 | 166 | 105 | 267 | 1.26e-36 | 134 |
| Msa1069570 | AT1G35520.1 | 44.295 | 149 | 77 | 2 | 2 | 150 | 89 | 231 | 4.55e-34 | 126 |
| Msa1069570 | AT1G35540.1 | 46.099 | 141 | 70 | 2 | 6 | 146 | 93 | 227 | 7.95e-34 | 125 |
| Msa1069570 | AT1G34310.1 | 43.448 | 145 | 76 | 1 | 6 | 150 | 93 | 231 | 3.57e-33 | 124 |
| Msa1069570 | AT1G35240.1 | 42.953 | 149 | 79 | 2 | 2 | 150 | 89 | 231 | 6.92e-33 | 123 |
| Msa1069570 | AT1G34410.1 | 43.709 | 151 | 75 | 2 | 2 | 150 | 89 | 231 | 1.20e-32 | 122 |
| Msa1069570 | AT2G46530.2 | 45.161 | 124 | 67 | 1 | 44 | 166 | 36 | 159 | 2.72e-32 | 121 |
| Msa1069570 | AT1G34390.1 | 44.138 | 145 | 73 | 2 | 2 | 146 | 89 | 225 | 6.47e-32 | 120 |
| Msa1069570 | AT1G34170.2 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 2.58e-28 | 109 |
| Msa1069570 | AT1G34170.1 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 3.05e-28 | 109 |
| Msa1069570 | AT1G34170.3 | 40.000 | 155 | 77 | 4 | 2 | 150 | 87 | 231 | 4.20e-28 | 109 |
| Msa1069570 | AT1G43950.1 | 39.568 | 139 | 75 | 4 | 6 | 144 | 93 | 222 | 3.31e-23 | 92.0 |
| Msa1069570 | AT2G46870.1 | 36.082 | 97 | 61 | 1 | 37 | 133 | 27 | 122 | 3.85e-13 | 66.6 |
| Msa1069570 | AT1G01030.2 | 34.545 | 110 | 66 | 2 | 40 | 144 | 51 | 159 | 3.16e-11 | 61.2 |
| Msa1069570 | AT3G25730.1 | 30.952 | 126 | 70 | 2 | 45 | 168 | 183 | 293 | 4.58e-11 | 60.8 |
| Msa1069570 | AT1G01030.1 | 34.545 | 110 | 66 | 2 | 40 | 144 | 51 | 159 | 4.83e-11 | 60.8 |
| Msa1069570 | AT4G01500.1 | 31.200 | 125 | 73 | 4 | 18 | 133 | 1 | 121 | 5.77e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAACGTGTCTGAAATTA+AGG | 0.241218 | 7_2:-65271483 | Msa1069570:CDS |
| CCTTTGTCAGGGTGGAAATT+TGG | 0.252828 | 7_2:-65271113 | Msa1069570:CDS |
| GCATTTCAGGCATGTTTATA+GGG | 0.274751 | 7_2:-65271294 | Msa1069570:CDS |
| GGCATTTCAGGCATGTTTAT+AGG | 0.293252 | 7_2:-65271295 | Msa1069570:CDS |
| ATGGTGAAAAGTGGCATTTC+AGG | 0.316984 | 7_2:-65271307 | Msa1069570:CDS |
| TGGAAATTTGGTAGTGGAAT+TGG | 0.321491 | 7_2:-65271101 | Msa1069570:CDS |
| TTGGAATTCGGAGGGCTAAA+AGG | 0.363443 | 7_2:-65271157 | Msa1069570:CDS |
| TTTGATAATGATGGTGTTGC+TGG | 0.376636 | 7_2:-65271506 | Msa1069570:CDS |
| GTTGGAGTCGATCCTTTGTC+AGG | 0.383121 | 7_2:-65271125 | Msa1069570:CDS |
| AGTGACAAGAAACTTGCTTC+TGG | 0.385156 | 7_2:-65271224 | Msa1069570:CDS |
| CTAACTTGGTTAATATTCAT+AGG | 0.385591 | 7_2:+65271530 | None:intergenic |
| AAGAGGCATTTGTTGACAAC+TGG | 0.392584 | 7_2:-65271263 | Msa1069570:CDS |
| AGTTTCTTGTCACTGACATA+TGG | 0.394738 | 7_2:+65271233 | None:intergenic |
| GTGAACTTAATGTTGGAATT+CGG | 0.402297 | 7_2:-65271169 | Msa1069570:CDS |
| GTGACAAGAAACTTGCTTCT+GGG | 0.423889 | 7_2:-65271223 | Msa1069570:CDS |
| CATCATTATCAAAACTAACT+TGG | 0.449861 | 7_2:+65271516 | None:intergenic |
| GTTGTCAACAAATGCCTCTT+CGG | 0.456311 | 7_2:+65271266 | None:intergenic |
| ATTTGTCCTGCACCACCTTA+CGG | 0.476461 | 7_2:-65271077 | Msa1069570:CDS |
| GAAAACAGTGAACTTAATGT+TGG | 0.494744 | 7_2:-65271176 | Msa1069570:CDS |
| TCAGGGTGGAAATTTGGTAG+TGG | 0.505938 | 7_2:-65271107 | Msa1069570:CDS |
| TTGGGATAGATGTCCTGAAA+AGG | 0.529804 | 7_2:+65271338 | None:intergenic |
| AATCCTCCGTAAGGTGGTGC+AGG | 0.533772 | 7_2:+65271071 | None:intergenic |
| TGACAAGAAACTTGCTTCTG+GGG | 0.545499 | 7_2:-65271222 | Msa1069570:CDS |
| CCAAATTTCCACCCTGACAA+AGG | 0.548832 | 7_2:+65271113 | None:intergenic |
| GCTAAAAGGCGAAATAATGT+TGG | 0.555377 | 7_2:-65271143 | Msa1069570:CDS |
| CATTTCAGGCATGTTTATAG+GGG | 0.556177 | 7_2:-65271293 | Msa1069570:CDS |
| AACTATGGAAATCCTCCGTA+AGG | 0.559080 | 7_2:+65271062 | None:intergenic |
| AGCGTTTCGGCACAATATCT+AGG | 0.559188 | 7_2:+65271392 | None:intergenic |
| GGCATTTGTTGACAACTGGA+TGG | 0.569244 | 7_2:-65271259 | Msa1069570:CDS |
| AACTTAATGTTGGAATTCGG+AGG | 0.572730 | 7_2:-65271166 | Msa1069570:CDS |
| AGGATGTACATGGTGAAAAG+TGG | 0.579569 | 7_2:-65271316 | Msa1069570:CDS |
| TCTGATGCAAACACTGGTGG+TGG | 0.592766 | 7_2:-65271425 | Msa1069570:CDS |
| ATCTATCCCAAGGATGTACA+TGG | 0.592936 | 7_2:-65271326 | Msa1069570:CDS |
| GGATAGATGTCCTGAAAAGG+AGG | 0.594077 | 7_2:+65271341 | None:intergenic |
| TTGGAGTCGATCCTTTGTCA+GGG | 0.596740 | 7_2:-65271124 | Msa1069570:CDS |
| ATGAAGTGTATGCAAAACTC+AGG | 0.607388 | 7_2:-65271559 | Msa1069570:CDS |
| TTTATAGGGGCACGCCGAAG+AGG | 0.616360 | 7_2:-65271280 | Msa1069570:CDS |
| GTTTGCATCAGATTGTGTCA+AGG | 0.616878 | 7_2:+65271436 | None:intergenic |
| ACACAATCTGATGCAAACAC+TGG | 0.627018 | 7_2:-65271431 | Msa1069570:CDS |
| ACTTAATGTTGGAATTCGGA+GGG | 0.629032 | 7_2:-65271165 | Msa1069570:CDS |
| TATGGAAATCCTCCGTAAGG+TGG | 0.634599 | 7_2:+65271065 | None:intergenic |
| GAGTCGATCCTTTGTCAGGG+TGG | 0.667216 | 7_2:-65271121 | Msa1069570:CDS |
| TGTCCTGCACCACCTTACGG+AGG | 0.685773 | 7_2:-65271074 | Msa1069570:CDS |
| GATAGATGTCCTGAAAAGGA+GGG | 0.691897 | 7_2:+65271342 | None:intergenic |
| CAATCTGATGCAAACACTGG+TGG | 0.725224 | 7_2:-65271428 | Msa1069570:CDS |
| TTAGCTGAATAGTCCAAACG+AGG | 0.756003 | 7_2:+65271365 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTAACTTGGTTAATATTCAT+AGG | + | chr7_2:65271115-65271134 | None:intergenic | 25.0% |
| ! | CATCATTATCAAAACTAACT+TGG | + | chr7_2:65271129-65271148 | None:intergenic | 25.0% |
| !!! | CAAGTTAGTTTTGATAATGA+TGG | - | chr7_2:65271127-65271146 | Msa1069570:CDS | 25.0% |
| GAAAACAGTGAACTTAATGT+TGG | - | chr7_2:65271466-65271485 | Msa1069570:CDS | 30.0% | |
| GTGAACTTAATGTTGGAATT+CGG | - | chr7_2:65271473-65271492 | Msa1069570:CDS | 30.0% | |
| ! | GAGTTTTGCATACACTTCAT+CGG | + | chr7_2:65271083-65271102 | None:intergenic | 35.0% |
| ATGAAGTGTATGCAAAACTC+AGG | - | chr7_2:65271083-65271102 | Msa1069570:CDS | 35.0% | |
| !! | TTTGATAATGATGGTGTTGC+TGG | - | chr7_2:65271136-65271155 | Msa1069570:CDS | 35.0% |
| ! | CATCAACGTGTCTGAAATTA+AGG | - | chr7_2:65271159-65271178 | Msa1069570:CDS | 35.0% |
| ! | TTTTCACCATGTACATCCTT+GGG | + | chr7_2:65271325-65271344 | None:intergenic | 35.0% |
| GCATTTCAGGCATGTTTATA+GGG | - | chr7_2:65271348-65271367 | Msa1069570:CDS | 35.0% | |
| CATTTCAGGCATGTTTATAG+GGG | - | chr7_2:65271349-65271368 | Msa1069570:CDS | 35.0% | |
| AGTTTCTTGTCACTGACATA+TGG | + | chr7_2:65271412-65271431 | None:intergenic | 35.0% | |
| AACTTAATGTTGGAATTCGG+AGG | - | chr7_2:65271476-65271495 | Msa1069570:CDS | 35.0% | |
| ACTTAATGTTGGAATTCGGA+GGG | - | chr7_2:65271477-65271496 | Msa1069570:CDS | 35.0% | |
| GCTAAAAGGCGAAATAATGT+TGG | - | chr7_2:65271499-65271518 | Msa1069570:CDS | 35.0% | |
| !! | TGGAAATTTGGTAGTGGAAT+TGG | - | chr7_2:65271541-65271560 | Msa1069570:CDS | 35.0% |
| GTTTGCATCAGATTGTGTCA+AGG | + | chr7_2:65271209-65271228 | None:intergenic | 40.0% | |
| ACACAATCTGATGCAAACAC+TGG | - | chr7_2:65271211-65271230 | Msa1069570:CDS | 40.0% | |
| !! | CAAACGAGGAAAAAGCGTTT+CGG | + | chr7_2:65271266-65271285 | None:intergenic | 40.0% |
| TTAGCTGAATAGTCCAAACG+AGG | + | chr7_2:65271280-65271299 | None:intergenic | 40.0% | |
| GATAGATGTCCTGAAAAGGA+GGG | + | chr7_2:65271303-65271322 | None:intergenic | 40.0% | |
| TTGGGATAGATGTCCTGAAA+AGG | + | chr7_2:65271307-65271326 | None:intergenic | 40.0% | |
| !! | TTTTCAGGACATCTATCCCA+AGG | - | chr7_2:65271306-65271325 | Msa1069570:CDS | 40.0% |
| ATCTATCCCAAGGATGTACA+TGG | - | chr7_2:65271316-65271335 | Msa1069570:CDS | 40.0% | |
| ! | CTTTTCACCATGTACATCCT+TGG | + | chr7_2:65271326-65271345 | None:intergenic | 40.0% |
| AGGATGTACATGGTGAAAAG+TGG | - | chr7_2:65271326-65271345 | Msa1069570:CDS | 40.0% | |
| ATGGTGAAAAGTGGCATTTC+AGG | - | chr7_2:65271335-65271354 | Msa1069570:CDS | 40.0% | |
| GGCATTTCAGGCATGTTTAT+AGG | - | chr7_2:65271347-65271366 | Msa1069570:CDS | 40.0% | |
| GTTGTCAACAAATGCCTCTT+CGG | + | chr7_2:65271379-65271398 | None:intergenic | 40.0% | |
| !! | AAGAGGCATTTGTTGACAAC+TGG | - | chr7_2:65271379-65271398 | Msa1069570:CDS | 40.0% |
| ! | AGTGACAAGAAACTTGCTTC+TGG | - | chr7_2:65271418-65271437 | Msa1069570:CDS | 40.0% |
| ! | GTGACAAGAAACTTGCTTCT+GGG | - | chr7_2:65271419-65271438 | Msa1069570:CDS | 40.0% |
| ! | TGACAAGAAACTTGCTTCTG+GGG | - | chr7_2:65271420-65271439 | Msa1069570:CDS | 40.0% |
| CAATCTGATGCAAACACTGG+TGG | - | chr7_2:65271214-65271233 | Msa1069570:CDS | 45.0% | |
| AGCGTTTCGGCACAATATCT+AGG | + | chr7_2:65271253-65271272 | None:intergenic | 45.0% | |
| !!! | CGAAACGCTTTTTCCTCGTT+TGG | - | chr7_2:65271264-65271283 | Msa1069570:CDS | 45.0% |
| ! | TTCAGCTAACCCTCCTTTTC+AGG | - | chr7_2:65271291-65271310 | Msa1069570:CDS | 45.0% |
| GGATAGATGTCCTGAAAAGG+AGG | + | chr7_2:65271304-65271323 | None:intergenic | 45.0% | |
| ! | GGCATTTGTTGACAACTGGA+TGG | - | chr7_2:65271383-65271402 | Msa1069570:CDS | 45.0% |
| TTGGAATTCGGAGGGCTAAA+AGG | - | chr7_2:65271485-65271504 | Msa1069570:CDS | 45.0% | |
| TTGGAGTCGATCCTTTGTCA+GGG | - | chr7_2:65271518-65271537 | Msa1069570:CDS | 45.0% | |
| CCAAATTTCCACCCTGACAA+AGG | + | chr7_2:65271532-65271551 | None:intergenic | 45.0% | |
| CCTTTGTCAGGGTGGAAATT+TGG | - | chr7_2:65271529-65271548 | Msa1069570:CDS | 45.0% | |
| TCAGGGTGGAAATTTGGTAG+TGG | - | chr7_2:65271535-65271554 | Msa1069570:CDS | 45.0% | |
| ATTTGTCCTGCACCACCTTA+CGG | - | chr7_2:65271565-65271584 | Msa1069570:CDS | 45.0% | |
| TATGGAAATCCTCCGTAAGG+TGG | + | chr7_2:65271580-65271599 | None:intergenic | 45.0% | |
| TCTGATGCAAACACTGGTGG+TGG | - | chr7_2:65271217-65271236 | Msa1069570:CDS | 50.0% | |
| GTTGGAGTCGATCCTTTGTC+AGG | - | chr7_2:65271517-65271536 | Msa1069570:CDS | 50.0% | |
| ! | TTTATAGGGGCACGCCGAAG+AGG | - | chr7_2:65271362-65271381 | Msa1069570:CDS | 55.0% |
| GAGTCGATCCTTTGTCAGGG+TGG | - | chr7_2:65271521-65271540 | Msa1069570:CDS | 55.0% | |
| AATCCTCCGTAAGGTGGTGC+AGG | + | chr7_2:65271574-65271593 | None:intergenic | 55.0% | |
| TGTCCTGCACCACCTTACGG+AGG | - | chr7_2:65271568-65271587 | Msa1069570:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 65271064 | 65271600 | 65271064 | ID=Msa1069570;Name=Msa1069570 |
| chr7_2 | mRNA | 65271064 | 65271600 | 65271064 | ID=Msa1069570-mRNA-1;Parent=Msa1069570;Name=Msa1069570-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|178 |
| chr7_2 | exon | 65271064 | 65271600 | 65271064 | ID=Msa1069570-mRNA-1:exon:13740;Parent=Msa1069570-mRNA-1 |
| chr7_2 | CDS | 65271064 | 65271600 | 65271064 | ID=Msa1069570-mRNA-1:cds;Parent=Msa1069570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
