Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070640 | XP_003624615.1 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070640 | sp|B3H615|ING2_ARATH | 78.707 | 263 | 51 | 4 | 1 | 261 | 1 | 260 | 9.05e-142 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070640 | A2Q5P5 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1070640 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070640 | MtrunA17_Chr7g0253141 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 553 |
| Msa1070640 | MtrunA17_Chr1g0169261 | 30.385 | 260 | 144 | 6 | 9 | 256 | 3 | 237 | 6.96e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070640 | AT1G54390.4 | 78.707 | 263 | 51 | 4 | 1 | 261 | 1 | 260 | 9.20e-143 | 401 |
| Msa1070640 | AT1G54390.3 | 78.707 | 263 | 51 | 4 | 1 | 261 | 1 | 260 | 9.20e-143 | 401 |
| Msa1070640 | AT1G54390.7 | 75.111 | 225 | 51 | 4 | 39 | 261 | 19 | 240 | 1.15e-113 | 327 |
| Msa1070640 | AT1G54390.8 | 75.111 | 225 | 51 | 4 | 39 | 261 | 19 | 240 | 1.15e-113 | 327 |
| Msa1070640 | AT1G54390.5 | 75.111 | 225 | 51 | 4 | 39 | 261 | 19 | 240 | 1.15e-113 | 327 |
| Msa1070640 | AT1G54390.1 | 78.603 | 229 | 44 | 4 | 1 | 227 | 1 | 226 | 4.66e-113 | 327 |
| Msa1070640 | AT1G54390.2 | 77.729 | 229 | 46 | 4 | 1 | 227 | 1 | 226 | 6.03e-113 | 328 |
| Msa1070640 | AT1G54390.6 | 81.768 | 181 | 29 | 3 | 83 | 261 | 1 | 179 | 1.78e-99 | 288 |
| Msa1070640 | AT3G24010.1 | 31.452 | 248 | 144 | 6 | 9 | 256 | 3 | 224 | 5.74e-30 | 112 |
Find 90 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAATTTCAGGTATCTTT+TGG | 0.176968 | 7_2:+66976220 | Msa1070640:intron |
| ATTGCAATAGAAGAAATATT+AGG | 0.220698 | 7_2:-66974232 | None:intergenic |
| GTTGGGTTATGATTAATTAA+TGG | 0.231604 | 7_2:+66976577 | Msa1070640:three_prime_UTR |
| TGAACCTTGTCTCTTGTGTT+AGG | 0.290251 | 7_2:-66976415 | None:intergenic |
| TAGTCCTTCTTATGGCTTCC+TGG | 0.301453 | 7_2:-66976026 | None:intergenic |
| TTGCAATAGAAGAAATATTA+GGG | 0.310592 | 7_2:-66974231 | None:intergenic |
| TTGGGTTATGATTAATTAAT+GGG | 0.310648 | 7_2:+66976578 | Msa1070640:three_prime_UTR |
| AGTCTACGTCGATGACTATT+TGG | 0.315508 | 7_2:+66974290 | Msa1070640:CDS |
| CAATAATCATTCAATCAAAA+TGG | 0.316662 | 7_2:+66974251 | Msa1070640:exon |
| AGACAAGGTTCAAGGGAAAA+TGG | 0.335155 | 7_2:+66976426 | Msa1070640:CDS |
| AATCGAAGAGACTTGATTAC+AGG | 0.362393 | 7_2:+66975964 | Msa1070640:CDS |
| ACACAGTATGTAGGTTCATT+TGG | 0.368463 | 7_2:-66976083 | None:intergenic |
| ACTTTGTCTGCTGCCTTGTC+TGG | 0.368542 | 7_2:-66974651 | None:intergenic |
| ACTTATGAACTTGGTTCAAC+TGG | 0.370387 | 7_2:-66976500 | None:intergenic |
| TGTAGGTTCATTTGGATCAA+TGG | 0.378225 | 7_2:-66976075 | None:intergenic |
| AAAAGAAATCGAGGCGAATC+AGG | 0.384479 | 7_2:+66974774 | Msa1070640:CDS |
| AACCCTGGAAGTGTTCTTGC+TGG | 0.390369 | 7_2:-66974189 | None:intergenic |
| GGATCATATAGTCCTTCTTA+TGG | 0.391014 | 7_2:-66976034 | None:intergenic |
| GAACCAGCAAGAACACTTCC+AGG | 0.399537 | 7_2:+66974186 | Msa1070640:five_prime_UTR |
| GTAGGTTCATTTGGATCAAT+GGG | 0.417965 | 7_2:-66976074 | None:intergenic |
| ACAACGACTACTTATGAACT+TGG | 0.419318 | 7_2:-66976509 | None:intergenic |
| AAATATTAGGGTTTGCGATT+GGG | 0.421821 | 7_2:-66974219 | None:intergenic |
| TACATACTGTGTTTGTCATC+AGG | 0.423437 | 7_2:+66976094 | Msa1070640:CDS |
| GAAATATTAGGGTTTGCGAT+TGG | 0.424049 | 7_2:-66974220 | None:intergenic |
| CTTTAGATCTTCAGCGAAGT+AGG | 0.427352 | 7_2:-66975450 | None:intergenic |
| TTGATTACAGGGAGAGAGAC+TGG | 0.434207 | 7_2:+66975976 | Msa1070640:CDS |
| TTCTTATGGCTTCCTGGTGG+AGG | 0.438248 | 7_2:-66976020 | None:intergenic |
| CAAAACAACGTAAATATTCC+AGG | 0.450586 | 7_2:+66974120 | None:intergenic |
| TGTCACCGCATGGTGTGAAC+CGG | 0.451384 | 7_2:-66976705 | None:intergenic |
| AAGCTCAGCGGGCAATGTAT+TGG | 0.453107 | 7_2:-66974413 | None:intergenic |
| CTCATCTCACGGCTCTAAGA+AGG | 0.454623 | 7_2:+66974687 | Msa1070640:CDS |
| CGATTGGGATTTGCGAACCC+TGG | 0.461059 | 7_2:-66974204 | None:intergenic |
| GCAGCAGACAAAGTACTGTA+TGG | 0.463935 | 7_2:+66974660 | Msa1070640:CDS |
| AAAACGCTGTCGTTTGAGCC+TGG | 0.464707 | 7_2:-66974138 | None:intergenic |
| AGAAGTCTCTGAAGCTCAGC+GGG | 0.472014 | 7_2:-66974424 | None:intergenic |
| GTGGTAGTAATCTGCAAGTT+GGG | 0.493544 | 7_2:-66976454 | None:intergenic |
| GAAAAGCGCAGGCACACATA+TGG | 0.494278 | 7_2:+66975933 | Msa1070640:CDS |
| AACACAAGAGACAAGGTTCA+AGG | 0.514404 | 7_2:+66976418 | Msa1070640:CDS |
| TTGCTTGACTATTTGTGTGC+CGG | 0.515421 | 7_2:+66976686 | Msa1070640:three_prime_UTR |
| GGCACGACAAGCATATGAAC+TGG | 0.521248 | 7_2:+66974834 | Msa1070640:CDS |
| GAAGGACTATATGATCCCTA+TGG | 0.521889 | 7_2:+66976040 | Msa1070640:CDS |
| TGTGGTAGTAATCTGCAAGT+TGG | 0.523029 | 7_2:-66976455 | None:intergenic |
| CAGCAGACAAAGTACTGTAT+GGG | 0.532458 | 7_2:+66974661 | Msa1070640:CDS |
| CTGGGATTGGTCTGGTGTGA+GGG | 0.532859 | 7_2:+66976809 | Msa1070640:three_prime_UTR |
| ATGGGTTGATCAATATCCAT+AGG | 0.533374 | 7_2:-66976056 | None:intergenic |
| GATAGTGCCGAGGAGGTGAA+TGG | 0.537405 | 7_2:+66976372 | Msa1070640:intron |
| AAAATGGCAATTGCACGCAC+TGG | 0.541228 | 7_2:+66974267 | Msa1070640:exon |
| TAATCAAGTCTCTTCGATTG+AGG | 0.541620 | 7_2:-66975960 | None:intergenic |
| TTAGGCCAACACATGAATAG+TGG | 0.541653 | 7_2:-66976397 | None:intergenic |
| TAATAACAATTACATGAATG+AGG | 0.550580 | 7_2:+66974723 | Msa1070640:CDS |
| TCCACCAGGAAGCCATAAGA+AGG | 0.551349 | 7_2:+66976022 | Msa1070640:CDS |
| AAGATTTATCATTGACATTG+TGG | 0.551966 | 7_2:-66976473 | None:intergenic |
| ATTGAGTTTATGCACTGAGA+AGG | 0.558927 | 7_2:+66974804 | Msa1070640:CDS |
| CAGATACGAGGAAGCGAAGG+TGG | 0.561608 | 7_2:-66974164 | None:intergenic |
| TGGTTCCACTATTCATGTGT+TGG | 0.563319 | 7_2:+66976392 | Msa1070640:CDS |
| AAGGGAAAGAGTTACATAAG+AGG | 0.564415 | 7_2:-66976620 | None:intergenic |
| ACACAAGAGACAAGGTTCAA+GGG | 0.570451 | 7_2:+66976419 | Msa1070640:CDS |
| TCCCTAAACCTGAAAAGCGC+AGG | 0.571245 | 7_2:+66975922 | Msa1070640:CDS |
| TCCTTCTTATGGCTTCCTGG+TGG | 0.577394 | 7_2:-66976023 | None:intergenic |
| TTAGGGACAATAGGAAGTGG+GGG | 0.580164 | 7_2:-66975906 | None:intergenic |
| TGTATGGGGTTCTCATCTCA+CGG | 0.581769 | 7_2:+66974676 | Msa1070640:CDS |
| GGTTTAGGGACAATAGGAAG+TGG | 0.584655 | 7_2:-66975909 | None:intergenic |
| TTCTTGCTGGTTCAGATACG+AGG | 0.590084 | 7_2:-66974176 | None:intergenic |
| TGGGTTGATCAATATCCATA+GGG | 0.596146 | 7_2:-66976055 | None:intergenic |
| TTCGCTGAAGATCTAAAGCA+AGG | 0.596239 | 7_2:+66975455 | Msa1070640:CDS |
| GAGAAGTCTCTGAAGCTCAG+CGG | 0.598711 | 7_2:-66974425 | None:intergenic |
| TCGTTCATCGAGTTCACGAA+CGG | 0.599115 | 7_2:-66974452 | None:intergenic |
| TGATGACAAACACAGTATGT+AGG | 0.600981 | 7_2:-66976092 | None:intergenic |
| GTTTAGGGACAATAGGAAGT+GGG | 0.601691 | 7_2:-66975908 | None:intergenic |
| TCATCTCACGGCTCTAAGAA+GGG | 0.602372 | 7_2:+66974688 | Msa1070640:CDS |
| TGGGTTATGATTAATTAATG+GGG | 0.608426 | 7_2:+66976579 | Msa1070640:three_prime_UTR |
| TTTGAGCTAATGCCTCCACC+AGG | 0.610776 | 7_2:+66976008 | Msa1070640:CDS |
| CCATGTAAAACGACTTGATG+AGG | 0.613217 | 7_2:+66975421 | Msa1070640:CDS |
| AGTGGAACCATTCACCTCCT+CGG | 0.620021 | 7_2:-66976379 | None:intergenic |
| TGATTACAGGGAGAGAGACT+GGG | 0.622459 | 7_2:+66975977 | Msa1070640:CDS |
| ATGTCATCACTGTCACCGCA+TGG | 0.625430 | 7_2:-66976715 | None:intergenic |
| GTTCAGATACGAGGAAGCGA+AGG | 0.630829 | 7_2:-66974167 | None:intergenic |
| ATCGAAGAGACTTGATTACA+GGG | 0.633832 | 7_2:+66975965 | Msa1070640:CDS |
| ACTGGGATTGGTCTGGTGTG+AGG | 0.634021 | 7_2:+66976808 | Msa1070640:three_prime_UTR |
| CCTTGACCAGAAAATACACG+TGG | 0.635485 | 7_2:+66976639 | Msa1070640:three_prime_UTR |
| AACCAGCAAGAACACTTCCA+GGG | 0.642362 | 7_2:+66974187 | Msa1070640:five_prime_UTR |
| TGTTATTCTTGATAGTGCCG+AGG | 0.646877 | 7_2:+66976362 | Msa1070640:intron |
| TTTAGGGACAATAGGAAGTG+GGG | 0.647357 | 7_2:-66975907 | None:intergenic |
| AAGCTATGATAAACCAGACA+AGG | 0.648028 | 7_2:+66974638 | Msa1070640:intron |
| AGCAGACAAAGTACTGTATG+GGG | 0.659495 | 7_2:+66974662 | Msa1070640:CDS |
| GAAAATGCGAAAAGAAATCG+AGG | 0.660931 | 7_2:+66974765 | Msa1070640:CDS |
| TATTCTTGATAGTGCCGAGG+AGG | 0.680877 | 7_2:+66976365 | Msa1070640:intron |
| TTGGCCTAACACAAGAGACA+AGG | 0.699970 | 7_2:+66976411 | Msa1070640:CDS |
| GTGTGCCGGTTCACACCATG+CGG | 0.732749 | 7_2:+66976700 | Msa1070640:three_prime_UTR |
| CTTGACCAGAAAATACACGT+GGG | 0.768133 | 7_2:+66976640 | Msa1070640:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAAAAAAGTAAATTTTTT+AGG | - | chr7_2:66974518-66974537 | None:intergenic | 10.0% |
| !!! | TTTTATATATAGCATTTATA+AGG | + | chr7_2:66974897-66974916 | Msa1070640:intron | 10.0% |
| !! | TGGAATAAAATTGAAAAATT+GGG | - | chr7_2:66974373-66974392 | None:intergenic | 15.0% |
| !! | TTGGAATAAAATTGAAAAAT+TGG | - | chr7_2:66974374-66974393 | None:intergenic | 15.0% |
| !!! | AATTTTTTAGGGTTAAAAAA+GGG | - | chr7_2:66974506-66974525 | None:intergenic | 15.0% |
| !!! | AAATTTTTTAGGGTTAAAAA+AGG | - | chr7_2:66974507-66974526 | None:intergenic | 15.0% |
| !!! | TTTTAATCATCATTTTTTGT+TGG | + | chr7_2:66974594-66974613 | Msa1070640:intron | 15.0% |
| !! | AACAAAAAAGAAAATAAGAA+AGG | - | chr7_2:66975832-66975851 | None:intergenic | 15.0% |
| !! | AAAATATTAACAAAAAACAC+TGG | + | chr7_2:66976790-66976809 | Msa1070640:three_prime_UTR | 15.0% |
| !! | AAATATTAACAAAAAACACT+GGG | + | chr7_2:66976791-66976810 | Msa1070640:three_prime_UTR | 15.0% |
| !! | TTGCAATAGAAGAAATATTA+GGG | - | chr7_2:66974234-66974253 | None:intergenic | 20.0% |
| !! | ATTGCAATAGAAGAAATATT+AGG | - | chr7_2:66974235-66974254 | None:intergenic | 20.0% |
| !! | CAATAATCATTCAATCAAAA+TGG | + | chr7_2:66974251-66974270 | Msa1070640:exon | 20.0% |
| !! | CATAGAGAATAGAAAATAAA+AGG | - | chr7_2:66974326-66974345 | None:intergenic | 20.0% |
| !! | GAATAAAATTGAAAAATTGG+GGG | - | chr7_2:66974371-66974390 | None:intergenic | 20.0% |
| !! | GGAATAAAATTGAAAAATTG+GGG | - | chr7_2:66974372-66974391 | None:intergenic | 20.0% |
| !!! | AAATCTATTTTTAGATGCAA+TGG | - | chr7_2:66974574-66974593 | None:intergenic | 20.0% |
| !! | TAATAACAATTACATGAATG+AGG | + | chr7_2:66974723-66974742 | Msa1070640:CDS | 20.0% |
| !!! | AAAGAGTATGTTCAATATTT+TGG | + | chr7_2:66975616-66975635 | Msa1070640:intron | 20.0% |
| !!! | TGTCAATGAAATTGTTTTTT+TGG | + | chr7_2:66975789-66975808 | Msa1070640:intron | 20.0% |
| !!! | TTCACATTTTATTTTATCAG+AGG | + | chr7_2:66975851-66975870 | Msa1070640:intron | 20.0% |
| !!! | TCACATTTTATTTTATCAGA+GGG | + | chr7_2:66975852-66975871 | Msa1070640:intron | 20.0% |
| !!! | TTTTAGTGAATGCATAATTT+TGG | + | chr7_2:66976553-66976572 | Msa1070640:three_prime_UTR | 20.0% |
| !!! | TTTAGTGAATGCATAATTTT+GGG | + | chr7_2:66976554-66976573 | Msa1070640:three_prime_UTR | 20.0% |
| !! | TTGGGTTATGATTAATTAAT+GGG | + | chr7_2:66976578-66976597 | Msa1070640:three_prime_UTR | 20.0% |
| ! | AAAAATTGGGGGAAAAATTA+GGG | - | chr7_2:66974360-66974379 | None:intergenic | 25.0% |
| ! | CATCTATGGAATAGAAAAAT+TGG | - | chr7_2:66974393-66974412 | None:intergenic | 25.0% |
| ! | TTTGAGTAGGAATTTACATT+GGG | - | chr7_2:66974479-66974498 | None:intergenic | 25.0% |
| !!! | TTTTGAGTAGGAATTTACAT+TGG | - | chr7_2:66974480-66974499 | None:intergenic | 25.0% |
| !!! | AAAAAAGGGAATTTTTGAGT+AGG | - | chr7_2:66974492-66974511 | None:intergenic | 25.0% |
| ! | AGTAATTTCATATCAACAGA+GGG | - | chr7_2:66974541-66974560 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTTTTAGCTTTGA+TGG | + | chr7_2:66974860-66974879 | Msa1070640:intron | 25.0% |
| ! | ACATGATATCCAAATAGTAA+TGG | + | chr7_2:66974958-66974977 | Msa1070640:intron | 25.0% |
| ! | ACTTAATCACATTACCATTA+AGG | - | chr7_2:66974988-66975007 | None:intergenic | 25.0% |
| !!! | AATTTTTTCCATATTGCTTC+TGG | + | chr7_2:66975325-66975344 | Msa1070640:intron | 25.0% |
| ! | AAATCAGAATGCAAATCAAA+TGG | - | chr7_2:66975489-66975508 | None:intergenic | 25.0% |
| !!! | TATTTTGGAAGTGCATAATT+TGG | + | chr7_2:66975631-66975650 | Msa1070640:intron | 25.0% |
| !!! | GATTGTTGTTTTGGAATTTA+GGG | + | chr7_2:66975724-66975743 | Msa1070640:intron | 25.0% |
| !!! | ATTGTTGTTTTGGAATTTAG+GGG | + | chr7_2:66975725-66975744 | Msa1070640:intron | 25.0% |
| ! | AACAATTTCATTGACAAAGT+AGG | - | chr7_2:66975785-66975804 | None:intergenic | 25.0% |
| !!! | CACATTTTATTTTATCAGAG+GGG | + | chr7_2:66975853-66975872 | Msa1070640:intron | 25.0% |
| ! | AACTCAGTCAAAATAACAAA+AGG | - | chr7_2:66976336-66976355 | None:intergenic | 25.0% |
| ! | AAGATTTATCATTGACATTG+TGG | - | chr7_2:66976476-66976495 | None:intergenic | 25.0% |
| !! | TTAGTGAATGCATAATTTTG+GGG | + | chr7_2:66976555-66976574 | Msa1070640:three_prime_UTR | 25.0% |
| ! | GTTGGGTTATGATTAATTAA+TGG | + | chr7_2:66976577-66976596 | Msa1070640:three_prime_UTR | 25.0% |
| ! | TGGGTTATGATTAATTAATG+GGG | + | chr7_2:66976579-66976598 | Msa1070640:three_prime_UTR | 25.0% |
| AAATATTAGGGTTTGCGATT+GGG | - | chr7_2:66974222-66974241 | None:intergenic | 30.0% | |
| GAAAAATTGGGGGAAAAATT+AGG | - | chr7_2:66974361-66974380 | None:intergenic | 30.0% | |
| GTAATTTCATATCAACAGAG+GGG | - | chr7_2:66974540-66974559 | None:intergenic | 30.0% | |
| GAGTAATTTCATATCAACAG+AGG | - | chr7_2:66974542-66974561 | None:intergenic | 30.0% | |
| !!! | ATCATCATTTTTTGTTGGTG+TGG | + | chr7_2:66974599-66974618 | Msa1070640:intron | 30.0% |
| ! | TTCTTTTCGCATTTTCTCAA+TGG | - | chr7_2:66974761-66974780 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCTTTGATGGCT+TGG | + | chr7_2:66974865-66974884 | Msa1070640:intron | 30.0% |
| TATAGCATTTATAAGGCTCA+AGG | + | chr7_2:66974904-66974923 | Msa1070640:intron | 30.0% | |
| ATAGCATTTATAAGGCTCAA+GGG | + | chr7_2:66974905-66974924 | Msa1070640:intron | 30.0% | |
| TAAGGCAATCCATTACTATT+TGG | - | chr7_2:66974970-66974989 | None:intergenic | 30.0% | |
| !! | ATAGTAATGGATTGCCTTAA+TGG | + | chr7_2:66974971-66974990 | Msa1070640:intron | 30.0% |
| AGCTTAAACAAGAAGAATGA+TGG | - | chr7_2:66975163-66975182 | None:intergenic | 30.0% | |
| CCAGATCATACTAATTGTAT+AGG | - | chr7_2:66975551-66975570 | None:intergenic | 30.0% | |
| CCTATACAATTAGTATGATC+TGG | + | chr7_2:66975548-66975567 | Msa1070640:intron | 30.0% | |
| CATTACATGTTTCTTTAGAC+AGG | - | chr7_2:66975667-66975686 | None:intergenic | 30.0% | |
| !!! | GGATTGTTGTTTTGGAATTT+AGG | + | chr7_2:66975723-66975742 | Msa1070640:intron | 30.0% |
| TCATTGACAAAGTAGGAAAA+GGG | - | chr7_2:66975778-66975797 | None:intergenic | 30.0% | |
| TTCATTGACAAAGTAGGAAA+AGG | - | chr7_2:66975779-66975798 | None:intergenic | 30.0% | |
| AGTCAGTTTACTGAAATTTC+AGG | + | chr7_2:66976210-66976229 | Msa1070640:intron | 30.0% | |
| !! | CTGAAATTTCAGGTATCTTT+TGG | + | chr7_2:66976220-66976239 | Msa1070640:intron | 30.0% |
| GTCAAAATAACAAAAGGAGA+GGG | - | chr7_2:66976330-66976349 | None:intergenic | 30.0% | |
| AGTCAAAATAACAAAAGGAG+AGG | - | chr7_2:66976331-66976350 | None:intergenic | 30.0% | |
| TTAACAAAAAACACTGGGAT+TGG | + | chr7_2:66976796-66976815 | Msa1070640:three_prime_UTR | 30.0% | |
| GAAATATTAGGGTTTGCGAT+TGG | - | chr7_2:66974223-66974242 | None:intergenic | 35.0% | |
| AAGCTATGATAAACCAGACA+AGG | + | chr7_2:66974638-66974657 | Msa1070640:intron | 35.0% | |
| GAAAATGCGAAAAGAAATCG+AGG | + | chr7_2:66974765-66974784 | Msa1070640:CDS | 35.0% | |
| ATTGAGTTTATGCACTGAGA+AGG | + | chr7_2:66974804-66974823 | Msa1070640:CDS | 35.0% | |
| !! | TCTGCTTTAAGTTGTTTGAG+AGG | + | chr7_2:66975257-66975276 | Msa1070640:intron | 35.0% |
| ATGCATAACCAGAAGCAATA+TGG | - | chr7_2:66975336-66975355 | None:intergenic | 35.0% | |
| AAGAAACAGCAAAAGCAAAC+AGG | + | chr7_2:66975702-66975721 | Msa1070640:intron | 35.0% | |
| !!! | AGCAAACAGGATTGTTGTTT+TGG | + | chr7_2:66975715-66975734 | Msa1070640:intron | 35.0% |
| CATTGACAAAGTAGGAAAAG+GGG | - | chr7_2:66975777-66975796 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTTTAGGGACAAT+AGG | - | chr7_2:66975918-66975937 | None:intergenic | 35.0% |
| TAATCAAGTCTCTTCGATTG+AGG | - | chr7_2:66975963-66975982 | None:intergenic | 35.0% | |
| AATCGAAGAGACTTGATTAC+AGG | + | chr7_2:66975964-66975983 | Msa1070640:CDS | 35.0% | |
| ATCGAAGAGACTTGATTACA+GGG | + | chr7_2:66975965-66975984 | Msa1070640:CDS | 35.0% | |
| GGATCATATAGTCCTTCTTA+TGG | - | chr7_2:66976037-66976056 | None:intergenic | 35.0% | |
| !! | TGGGTTGATCAATATCCATA+GGG | - | chr7_2:66976058-66976077 | None:intergenic | 35.0% |
| !! | ATGGGTTGATCAATATCCAT+AGG | - | chr7_2:66976059-66976078 | None:intergenic | 35.0% |
| GTAGGTTCATTTGGATCAAT+GGG | - | chr7_2:66976077-66976096 | None:intergenic | 35.0% | |
| TGTAGGTTCATTTGGATCAA+TGG | - | chr7_2:66976078-66976097 | None:intergenic | 35.0% | |
| ACACAGTATGTAGGTTCATT+TGG | - | chr7_2:66976086-66976105 | None:intergenic | 35.0% | |
| TGATGACAAACACAGTATGT+AGG | - | chr7_2:66976095-66976114 | None:intergenic | 35.0% | |
| TACATACTGTGTTTGTCATC+AGG | + | chr7_2:66976094-66976113 | Msa1070640:CDS | 35.0% | |
| ! | TATAGTTTCAAGTCTCCTTG+TGG | + | chr7_2:66976148-66976167 | Msa1070640:intron | 35.0% |
| ATATGACACAATTGTCCACA+AGG | - | chr7_2:66976166-66976185 | None:intergenic | 35.0% | |
| ACTTATGAACTTGGTTCAAC+TGG | - | chr7_2:66976503-66976522 | None:intergenic | 35.0% | |
| ACAACGACTACTTATGAACT+TGG | - | chr7_2:66976512-66976531 | None:intergenic | 35.0% | |
| !!! | TGAATGCATAATTTTGGGGT+TGG | + | chr7_2:66976559-66976578 | Msa1070640:three_prime_UTR | 35.0% |
| !!! | GAATGCATAATTTTGGGGTT+GGG | + | chr7_2:66976560-66976579 | Msa1070640:three_prime_UTR | 35.0% |
| AAGGGAAAGAGTTACATAAG+AGG | - | chr7_2:66976623-66976642 | None:intergenic | 35.0% | |
| AGTCTACGTCGATGACTATT+TGG | + | chr7_2:66974290-66974309 | Msa1070640:CDS | 40.0% | |
| TGGGGGAAAAATTAGGGTTA+GGG | - | chr7_2:66974354-66974373 | None:intergenic | 40.0% | |
| TTGGGGGAAAAATTAGGGTT+AGG | - | chr7_2:66974355-66974374 | None:intergenic | 40.0% | |
| !! | CAGCAGACAAAGTACTGTAT+GGG | + | chr7_2:66974661-66974680 | Msa1070640:CDS | 40.0% |
| !! | AGCAGACAAAGTACTGTATG+GGG | + | chr7_2:66974662-66974681 | Msa1070640:CDS | 40.0% |
| AAAAGAAATCGAGGCGAATC+AGG | + | chr7_2:66974774-66974793 | Msa1070640:CDS | 40.0% | |
| !! | ATGCACTGAGAAGGTTTTGT+TGG | + | chr7_2:66974813-66974832 | Msa1070640:CDS | 40.0% |
| GACAAGCATATGAACTGGTT+AGG | + | chr7_2:66974839-66974858 | Msa1070640:intron | 40.0% | |
| TCACTGTACAATTCATCTCG+AGG | + | chr7_2:66975133-66975152 | Msa1070640:intron | 40.0% | |
| ATGATTGCAGCTCCTATCTT+GGG | + | chr7_2:66975293-66975312 | Msa1070640:intron | 40.0% | |
| ATTCACATGACTCCCAAGAT+AGG | - | chr7_2:66975308-66975327 | None:intergenic | 40.0% | |
| !! | CCTCATCAAGTCGTTTTACA+TGG | - | chr7_2:66975424-66975443 | None:intergenic | 40.0% |
| CCATGTAAAACGACTTGATG+AGG | + | chr7_2:66975421-66975440 | Msa1070640:CDS | 40.0% | |
| CTTTAGATCTTCAGCGAAGT+AGG | - | chr7_2:66975453-66975472 | None:intergenic | 40.0% | |
| ! | TTCGCTGAAGATCTAAAGCA+AGG | + | chr7_2:66975455-66975474 | Msa1070640:CDS | 40.0% |
| TAGGAAAAGGGGAATTTCAG+GGG | - | chr7_2:66975766-66975785 | None:intergenic | 40.0% | |
| GTAGGAAAAGGGGAATTTCA+GGG | - | chr7_2:66975767-66975786 | None:intergenic | 40.0% | |
| AGTAGGAAAAGGGGAATTTC+AGG | - | chr7_2:66975768-66975787 | None:intergenic | 40.0% | |
| TTTAGGGACAATAGGAAGTG+GGG | - | chr7_2:66975910-66975929 | None:intergenic | 40.0% | |
| GTTTAGGGACAATAGGAAGT+GGG | - | chr7_2:66975911-66975930 | None:intergenic | 40.0% | |
| GAAGGACTATATGATCCCTA+TGG | + | chr7_2:66976040-66976059 | Msa1070640:CDS | 40.0% | |
| !! | TGTTATTCTTGATAGTGCCG+AGG | + | chr7_2:66976362-66976381 | Msa1070640:intron | 40.0% |
| TGGTTCCACTATTCATGTGT+TGG | + | chr7_2:66976392-66976411 | Msa1070640:CDS | 40.0% | |
| TTAGGCCAACACATGAATAG+TGG | - | chr7_2:66976400-66976419 | None:intergenic | 40.0% | |
| TGAACCTTGTCTCTTGTGTT+AGG | - | chr7_2:66976418-66976437 | None:intergenic | 40.0% | |
| AACACAAGAGACAAGGTTCA+AGG | + | chr7_2:66976418-66976437 | Msa1070640:CDS | 40.0% | |
| ACACAAGAGACAAGGTTCAA+GGG | + | chr7_2:66976419-66976438 | Msa1070640:CDS | 40.0% | |
| AGACAAGGTTCAAGGGAAAA+TGG | + | chr7_2:66976426-66976445 | Msa1070640:CDS | 40.0% | |
| GTGGTAGTAATCTGCAAGTT+GGG | - | chr7_2:66976457-66976476 | None:intergenic | 40.0% | |
| TGTGGTAGTAATCTGCAAGT+TGG | - | chr7_2:66976458-66976477 | None:intergenic | 40.0% | |
| !! | CACGTGTATTTTCTGGTCAA+GGG | - | chr7_2:66976641-66976660 | None:intergenic | 40.0% |
| CTTGACCAGAAAATACACGT+GGG | + | chr7_2:66976640-66976659 | Msa1070640:three_prime_UTR | 40.0% | |
| ! | CAAATCCCACGTGTATTTTC+TGG | - | chr7_2:66976648-66976667 | None:intergenic | 40.0% |
| TTGCTTGACTATTTGTGTGC+CGG | + | chr7_2:66976686-66976705 | Msa1070640:three_prime_UTR | 40.0% | |
| !! | AAAAAACACTGGGATTGGTC+TGG | + | chr7_2:66976801-66976820 | Msa1070640:three_prime_UTR | 40.0% |
| !! | TTCTTGCTGGTTCAGATACG+AGG | - | chr7_2:66974179-66974198 | None:intergenic | 45.0% |
| AACCAGCAAGAACACTTCCA+GGG | + | chr7_2:66974187-66974206 | Msa1070640:five_prime_UTR | 45.0% | |
| AAAATGGCAATTGCACGCAC+TGG | + | chr7_2:66974267-66974286 | Msa1070640:exon | 45.0% | |
| ! | GGGCAATGTATTGGCATCTA+TGG | - | chr7_2:66974407-66974426 | None:intergenic | 45.0% |
| TCGTTCATCGAGTTCACGAA+CGG | - | chr7_2:66974455-66974474 | None:intergenic | 45.0% | |
| !! | GCAGCAGACAAAGTACTGTA+TGG | + | chr7_2:66974660-66974679 | Msa1070640:CDS | 45.0% |
| TGTATGGGGTTCTCATCTCA+CGG | + | chr7_2:66974676-66974695 | Msa1070640:CDS | 45.0% | |
| !! | TCATCTCACGGCTCTAAGAA+GGG | + | chr7_2:66974688-66974707 | Msa1070640:CDS | 45.0% |
| ! | CTTTGATGGCTTGGACAAGA+GGG | + | chr7_2:66974874-66974893 | Msa1070640:intron | 45.0% |
| GATGATTGCAGCTCCTATCT+TGG | + | chr7_2:66975292-66975311 | Msa1070640:intron | 45.0% | |
| TTAGGGACAATAGGAAGTGG+GGG | - | chr7_2:66975909-66975928 | None:intergenic | 45.0% | |
| GGTTTAGGGACAATAGGAAG+TGG | - | chr7_2:66975912-66975931 | None:intergenic | 45.0% | |
| TTGATTACAGGGAGAGAGAC+TGG | + | chr7_2:66975976-66975995 | Msa1070640:CDS | 45.0% | |
| TGATTACAGGGAGAGAGACT+GGG | + | chr7_2:66975977-66975996 | Msa1070640:CDS | 45.0% | |
| TAGTCCTTCTTATGGCTTCC+TGG | - | chr7_2:66976029-66976048 | None:intergenic | 45.0% | |
| TGAACTTTGCTCTCTTGTGC+TGG | + | chr7_2:66976281-66976300 | Msa1070640:intron | 45.0% | |
| !! | TATTCTTGATAGTGCCGAGG+AGG | + | chr7_2:66976365-66976384 | Msa1070640:intron | 45.0% |
| TTGGCCTAACACAAGAGACA+AGG | + | chr7_2:66976411-66976430 | Msa1070640:CDS | 45.0% | |
| !! | CCACGTGTATTTTCTGGTCA+AGG | - | chr7_2:66976642-66976661 | None:intergenic | 45.0% |
| CCTTGACCAGAAAATACACG+TGG | + | chr7_2:66976639-66976658 | Msa1070640:three_prime_UTR | 45.0% | |
| !!! | TAAAAAAAGTAAATTTTTTA+GGG | - | chr7_2:66974517-66974536 | None:intergenic | 5.0% |
| ! | AAAACGCTGTCGTTTGAGCC+TGG | - | chr7_2:66974141-66974160 | None:intergenic | 50.0% |
| GTTCAGATACGAGGAAGCGA+AGG | - | chr7_2:66974170-66974189 | None:intergenic | 50.0% | |
| GAACCAGCAAGAACACTTCC+AGG | + | chr7_2:66974186-66974205 | Msa1070640:five_prime_UTR | 50.0% | |
| !! | AACCCTGGAAGTGTTCTTGC+TGG | - | chr7_2:66974192-66974211 | None:intergenic | 50.0% |
| AAGCTCAGCGGGCAATGTAT+TGG | - | chr7_2:66974416-66974435 | None:intergenic | 50.0% | |
| !! | AGAAGTCTCTGAAGCTCAGC+GGG | - | chr7_2:66974427-66974446 | None:intergenic | 50.0% |
| !! | GAGAAGTCTCTGAAGCTCAG+CGG | - | chr7_2:66974428-66974447 | None:intergenic | 50.0% |
| ACTTTGTCTGCTGCCTTGTC+TGG | - | chr7_2:66974654-66974673 | None:intergenic | 50.0% | |
| !! | CTCATCTCACGGCTCTAAGA+AGG | + | chr7_2:66974687-66974706 | Msa1070640:CDS | 50.0% |
| GGCACGACAAGCATATGAAC+TGG | + | chr7_2:66974834-66974853 | Msa1070640:CDS | 50.0% | |
| ! | GCTTTGATGGCTTGGACAAG+AGG | + | chr7_2:66974873-66974892 | Msa1070640:intron | 50.0% |
| ! | TCCCTAAACCTGAAAAGCGC+AGG | + | chr7_2:66975922-66975941 | Msa1070640:CDS | 50.0% |
| !!! | GCCTGCGCTTTTCAGGTTTA+GGG | - | chr7_2:66975926-66975945 | None:intergenic | 50.0% |
| !!! | TGCCTGCGCTTTTCAGGTTT+AGG | - | chr7_2:66975927-66975946 | None:intergenic | 50.0% |
| ! | TATGTGTGCCTGCGCTTTTC+AGG | - | chr7_2:66975933-66975952 | None:intergenic | 50.0% |
| ! | GAAAAGCGCAGGCACACATA+TGG | + | chr7_2:66975933-66975952 | Msa1070640:CDS | 50.0% |
| TTTGAGCTAATGCCTCCACC+AGG | + | chr7_2:66976008-66976027 | Msa1070640:CDS | 50.0% | |
| TTCTTATGGCTTCCTGGTGG+AGG | - | chr7_2:66976023-66976042 | None:intergenic | 50.0% | |
| TCCACCAGGAAGCCATAAGA+AGG | + | chr7_2:66976022-66976041 | Msa1070640:CDS | 50.0% | |
| TCCTTCTTATGGCTTCCTGG+TGG | - | chr7_2:66976026-66976045 | None:intergenic | 50.0% | |
| AGTGGAACCATTCACCTCCT+CGG | - | chr7_2:66976382-66976401 | None:intergenic | 50.0% | |
| ATGTCATCACTGTCACCGCA+TGG | - | chr7_2:66976718-66976737 | None:intergenic | 50.0% | |
| CAGATACGAGGAAGCGAAGG+TGG | - | chr7_2:66974167-66974186 | None:intergenic | 55.0% | |
| CGATTGGGATTTGCGAACCC+TGG | - | chr7_2:66974207-66974226 | None:intergenic | 55.0% | |
| GGAAGTGGGGGAAGAATTGC+TGG | - | chr7_2:66975897-66975916 | None:intergenic | 55.0% | |
| ! | GATAGTGCCGAGGAGGTGAA+TGG | + | chr7_2:66976372-66976391 | Msa1070640:intron | 55.0% |
| TGTCACCGCATGGTGTGAAC+CGG | - | chr7_2:66976708-66976727 | None:intergenic | 55.0% | |
| !! | ACTGGGATTGGTCTGGTGTG+AGG | + | chr7_2:66976808-66976827 | Msa1070640:three_prime_UTR | 55.0% |
| !! | CTGGGATTGGTCTGGTGTGA+GGG | + | chr7_2:66976809-66976828 | Msa1070640:three_prime_UTR | 55.0% |
| !! | GTGTGCCGGTTCACACCATG+CGG | + | chr7_2:66976700-66976719 | Msa1070640:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 66974122 | 66976863 | 66974122 | ID=Msa1070640;Name=Msa1070640 |
| chr7_2 | mRNA | 66974122 | 66976863 | 66974122 | ID=Msa1070640-mRNA-1;Parent=Msa1070640;Name=Msa1070640-mRNA-1;_AED=0.22;_eAED=0.22;_QI=148|1|1|1|1|1|7|376|263 |
| chr7_2 | exon | 66974122 | 66974315 | 66974122 | ID=Msa1070640-mRNA-1:exon:14391;Parent=Msa1070640-mRNA-1 |
| chr7_2 | exon | 66974410 | 66974481 | 66974410 | ID=Msa1070640-mRNA-1:exon:14392;Parent=Msa1070640-mRNA-1 |
| chr7_2 | exon | 66974641 | 66974855 | 66974641 | ID=Msa1070640-mRNA-1:exon:14393;Parent=Msa1070640-mRNA-1 |
| chr7_2 | exon | 66975413 | 66975476 | 66975413 | ID=Msa1070640-mRNA-1:exon:14394;Parent=Msa1070640-mRNA-1 |
| chr7_2 | exon | 66975871 | 66976115 | 66975871 | ID=Msa1070640-mRNA-1:exon:14395;Parent=Msa1070640-mRNA-1 |
| chr7_2 | exon | 66976232 | 66976270 | 66976232 | ID=Msa1070640-mRNA-1:exon:14396;Parent=Msa1070640-mRNA-1 |
| chr7_2 | exon | 66976377 | 66976863 | 66976377 | ID=Msa1070640-mRNA-1:exon:14397;Parent=Msa1070640-mRNA-1 |
| chr7_2 | five_prime_UTR | 66974122 | 66974269 | 66974122 | ID=Msa1070640-mRNA-1:five_prime_utr;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66974270 | 66974315 | 66974270 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66974410 | 66974481 | 66974410 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66974641 | 66974855 | 66974641 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66975413 | 66975476 | 66975413 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66975871 | 66976115 | 66975871 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66976232 | 66976270 | 66976232 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | CDS | 66976377 | 66976487 | 66976377 | ID=Msa1070640-mRNA-1:cds;Parent=Msa1070640-mRNA-1 |
| chr7_2 | three_prime_UTR | 66976488 | 66976863 | 66976488 | ID=Msa1070640-mRNA-1:three_prime_utr;Parent=Msa1070640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
