AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070660 MtrunA17_Chr7g0253141 100.000 49 0 0 84 132 215 263 1.61e-33 117
Msa1070660 MtrunA17_Chr1g0169261 57.143 42 15 2 84 125 199 237 3.17e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070660 AT1G54390.6 75.000 64 9 1 74 130 116 179 8.14e-31 108
Msa1070660 AT1G54390.4 75.000 64 9 1 74 130 197 260 1.62e-30 110
Msa1070660 AT1G54390.3 75.000 64 9 1 74 130 197 260 1.62e-30 110
Msa1070660 AT1G54390.7 75.000 64 9 1 74 130 177 240 2.79e-30 109
Msa1070660 AT1G54390.8 75.000 64 9 1 74 130 177 240 2.79e-30 109
Msa1070660 AT1G54390.5 75.000 64 9 1 74 130 177 240 2.79e-30 109
Msa1070660 AT3G24010.1 61.905 42 13 2 84 125 186 224 2.41e-12 62.0

Find 75 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCAGAAGCTGGATATTT+TGG 0.168572 7_2:+66988732 Msa1070660:five_prime_UTR
CTGAAATTTCAGGTATCTTT+TGG 0.176968 7_2:+66990645 Msa1070660:intron
TGAACCTTGTCTCTTGTGTT+AGG 0.290251 7_2:-66990839 None:intergenic
TCAATTCGCTCTGTTCTCTT+TGG 0.294972 7_2:+66988787 Msa1070660:five_prime_UTR
CCTTTGAGATAACCTGTCTA+AGG 0.338953 7_2:-66988997 None:intergenic
CATGCACAGGATGCTTAATA+AGG 0.350005 7_2:+66989173 Msa1070660:CDS
AGCACCAGACCAAGAGGATT+TGG 0.369381 7_2:-66989106 None:intergenic
AATTGTTTCTCCGGTAATCT+TGG 0.371620 7_2:-66991109 None:intergenic
ACTTATGAAGTTAGTTCAAC+TGG 0.379428 7_2:-66990924 None:intergenic
ACTTCCTTGCAGATCGAACT+TGG 0.384076 7_2:+66988944 Msa1070660:five_prime_UTR
AATCCTCTTGGTCTGGTGCT+TGG 0.395347 7_2:+66989109 Msa1070660:CDS
GTGTTACTATATATTTCGTC+TGG 0.396748 7_2:+66988851 Msa1070660:five_prime_UTR
CGTTTAAATTCCAAGATTAC+CGG 0.400198 7_2:+66991099 Msa1070660:three_prime_UTR
AGAACCGCTGCAAGTTTGCT+TGG 0.423244 7_2:-66988828 None:intergenic
TTCCTACTGTATGCATCTCT+TGG 0.425352 7_2:-66989041 None:intergenic
CTCTTGGTCTGGTGCTTGGA+TGG 0.430714 7_2:+66989113 Msa1070660:CDS
GTGCTAGAAATGACAAACTT+TGG 0.454944 7_2:+66988875 Msa1070660:five_prime_UTR
CCTGTCTAAGGCTCATGCTT+GGG 0.457492 7_2:-66988985 None:intergenic
ATTGCCAAATCCTCTTGGTC+TGG 0.457795 7_2:+66989102 Msa1070660:CDS
TTGTTATTGCCAAATCCTCT+TGG 0.460317 7_2:+66989097 Msa1070660:CDS
ACCTGTCTAAGGCTCATGCT+TGG 0.462011 7_2:-66988986 None:intergenic
ATCAGAGAGGAAAATATCAA+TGG 0.462197 7_2:+66990285 Msa1070660:intron
TGAAAGAGACATGGCCTCCT+AGG 0.467572 7_2:-66991071 None:intergenic
CTTATTAAGCATCCTGTGCA+TGG 0.477665 7_2:-66989172 None:intergenic
GAACCGCTGCAAGTTTGCTT+GGG 0.479094 7_2:-66988827 None:intergenic
TCCTGTGCATGGCTTGCAAA+AGG 0.479999 7_2:-66989161 None:intergenic
GAGATGCATACAGTAGGAAC+AGG 0.483948 7_2:+66989045 Msa1070660:exon
GTAAAGTGTGGGATGCGAAC+TGG 0.491486 7_2:+66988902 Msa1070660:five_prime_UTR
TCACAGTTAACACAAGTGAT+TGG 0.503986 7_2:-66988652 None:intergenic
CCCAAGCATGAGCCTTAGAC+AGG 0.505746 7_2:+66988985 Msa1070660:five_prime_UTR
AACACAAGAGACAAGGTTCA+AGG 0.514404 7_2:+66990842 Msa1070660:CDS
AGATGTCCTCCCTACCTGTA+TGG 0.514538 7_2:+66988604 Msa1070660:five_prime_UTR
TGTATCAGTTCTGCAGAAGC+TGG 0.518191 7_2:+66988723 Msa1070660:five_prime_UTR
GCTTAATAAGGCAGAGGCAA+AGG 0.534394 7_2:+66989185 Msa1070660:CDS
GCAAGAGAAAAGAATGTGGC+AGG 0.534849 7_2:-66988692 None:intergenic
TTTATCTGTGTTGGCCTAGG+AGG 0.537286 7_2:+66991057 Msa1070660:three_prime_UTR
GATAGTGCCGAGGAGGTGAA+TGG 0.537405 7_2:+66990796 Msa1070660:intron
TTAGGCCAACACATGAATAG+TGG 0.541653 7_2:-66990821 None:intergenic
CTTCCTTGCAGATCGAACTT+GGG 0.550146 7_2:+66988945 Msa1070660:five_prime_UTR
AAGATTTATCATTGACATTG+TGG 0.551966 7_2:-66990897 None:intergenic
TTCGCTGAAGATTCAAAGCA+AGG 0.555060 7_2:+66989946 Msa1070660:CDS
TGGTTCCACTATTCATGTGT+TGG 0.563319 7_2:+66990816 Msa1070660:CDS
AGACAAGGTTCAAGGGAAAG+TGG 0.569480 7_2:+66990850 Msa1070660:CDS
ACACAAGAGACAAGGTTCAA+GGG 0.570451 7_2:+66990843 Msa1070660:CDS
GGTTATCTCAAAGGCAATGT+GGG 0.570533 7_2:+66989006 Msa1070660:five_prime_UTR
ATGTGTGTTACAGACCATCT+TGG 0.572485 7_2:+66989069 Msa1070660:CDS
AACTTTGGAATGGTAAAGTG+TGG 0.573388 7_2:+66988890 Msa1070660:five_prime_UTR
AGAAATGACAAACTTTGGAA+TGG 0.574935 7_2:+66988880 Msa1070660:five_prime_UTR
CCTTAGACAGGTTATCTCAA+AGG 0.582903 7_2:+66988997 Msa1070660:five_prime_UTR
TTGATCACTTTGAATCAGCA+AGG 0.583269 7_2:-66988768 None:intergenic
TGTGGTAGTAATCTGCAAGT+TGG 0.587319 7_2:-66990879 None:intergenic
CAGGATGCTTAATAAGGCAG+AGG 0.591160 7_2:+66989179 Msa1070660:CDS
CGGTAGAGACCATACAGGTA+GGG 0.593879 7_2:-66988613 None:intergenic
TCGGTAGAGACCATACAGGT+AGG 0.594344 7_2:-66988614 None:intergenic
TTGCCCAAGTTCGATCTGCA+AGG 0.597147 7_2:-66988948 None:intergenic
CCATGTAAAACAACTTGATG+AGG 0.597866 7_2:+66989912 Msa1070660:CDS
CAATAACAAAAGCTCCAAGA+TGG 0.599354 7_2:-66989083 None:intergenic
TGATCACTTTGAATCAGCAA+GGG 0.617639 7_2:-66988767 None:intergenic
AGGTTATCTCAAAGGCAATG+TGG 0.619694 7_2:+66989005 Msa1070660:five_prime_UTR
AGTGGAACCATTCACCTCCT+CGG 0.620021 7_2:-66990803 None:intergenic
TCTGCAGAACTGATACAGCT+AGG 0.624429 7_2:-66988717 None:intergenic
TTCCAAGAGATGCATACAGT+AGG 0.625887 7_2:+66989039 Msa1070660:exon
TTCTTCGGTAGAGACCATAC+AGG 0.626074 7_2:-66988618 None:intergenic
CATCCAAGCACCAGACCAAG+AGG 0.627085 7_2:-66989112 None:intergenic
GATGGAAGTCAATGAAGGAG+TGG 0.634386 7_2:+66989131 Msa1070660:CDS
AGGTAGGGAGGACATCTCGA+TGG 0.637384 7_2:-66988598 None:intergenic
TTTCCCAAGCAAACTTGCAG+CGG 0.638626 7_2:+66988824 Msa1070660:five_prime_UTR
TGTTATTCTTGATAGTGCCG+AGG 0.646877 7_2:+66990786 Msa1070660:intron
GCTTGGATGGAAGTCAATGA+AGG 0.647121 7_2:+66989126 Msa1070660:CDS
TATTCTTGATAGTGCCGAGG+AGG 0.680877 7_2:+66990789 Msa1070660:intron
TAGAGACCATACAGGTAGGG+AGG 0.681114 7_2:-66988610 None:intergenic
AACGAGTCATGAAAGAGACA+TGG 0.688447 7_2:-66991080 None:intergenic
ACTTTGGAATGGTAAAGTGT+GGG 0.696908 7_2:+66988891 Msa1070660:five_prime_UTR
TTGGCCTAACACAAGAGACA+AGG 0.699970 7_2:+66990835 Msa1070660:CDS
GGCCGCAAGAGAAAAGAATG+TGG 0.726010 7_2:-66988696 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATCATAAATTTC+AGG + chr7_2:66990559-66990578 Msa1070660:intron 10.0%
!! TAAGTATATAAATGCTATAT+AGG - chr7_2:66989300-66989319 None:intergenic 15.0%
!! GAAAAAAGTAAAAAAGAATG+AGG - chr7_2:66989646-66989665 None:intergenic 20.0%
!!! CATTCTTTTTTACTTTTTTC+TGG + chr7_2:66989646-66989665 Msa1070660:intron 20.0%
!!! AATATTGTTTTGGAATTCAA+GGG + chr7_2:66990198-66990217 Msa1070660:intron 20.0%
! TTGGACATAAAAATCTTCTT+CGG - chr7_2:66988636-66988655 None:intergenic 25.0%
!!! TGCATAGCTTTTTTATAACT+TGG + chr7_2:66989263-66989282 Msa1070660:intron 25.0%
!!! TTTTTTATAACTTGGACAAG+AGG + chr7_2:66989271-66989290 Msa1070660:intron 25.0%
! TTCTGTAATGTGTTTAAATG+TGG + chr7_2:66989551-66989570 Msa1070660:intron 25.0%
!! TCATTTTACAATTCTTCTCT+AGG + chr7_2:66989615-66989634 Msa1070660:intron 25.0%
! AATTTGCATGACTTCAAAAT+AGG - chr7_2:66989803-66989822 None:intergenic 25.0%
!!! AATTTTTTGCATTTTGCTTC+TGG + chr7_2:66989819-66989838 Msa1070660:intron 25.0%
! AAATCAGAATGCAGATAAAA+TGG - chr7_2:66989980-66989999 None:intergenic 25.0%
!! GCAGATCATACTAATTTTAT+AGG - chr7_2:66990043-66990062 None:intergenic 25.0%
!! CATTACTTGTTTCTTTATAC+GGG - chr7_2:66990142-66990161 None:intergenic 25.0%
!! GCATTACTTGTTTCTTTATA+CGG - chr7_2:66990143-66990162 None:intergenic 25.0%
!! AGCAAAAAGGAATATTGTTT+TGG + chr7_2:66990188-66990207 Msa1070660:intron 25.0%
!!! GAATATTGTTTTGGAATTCA+AGG + chr7_2:66990197-66990216 Msa1070660:intron 25.0%
! GATCATATAATCACTTCTTA+TGG - chr7_2:66990463-66990482 None:intergenic 25.0%
! TATTGTGTTTGTTTGTCATT+AGG + chr7_2:66990525-66990544 Msa1070660:intron 25.0%
! AACTCAGTCAAAATAACAAA+AGG - chr7_2:66990760-66990779 None:intergenic 25.0%
! AAGATTTATCATTGACATTG+TGG - chr7_2:66990900-66990919 None:intergenic 25.0%
!!! ATGGAGACTTTATTTTTGGA+GGG - chr7_2:66988582-66988601 None:intergenic 30.0%
! GTGTTACTATATATTTCGTC+TGG + chr7_2:66988851-66988870 Msa1070660:five_prime_UTR 30.0%
! AGAAATGACAAACTTTGGAA+TGG + chr7_2:66988880-66988899 Msa1070660:five_prime_UTR 30.0%
TATAAAGAGTAATGCCTTAG+TGG + chr7_2:66989328-66989347 Msa1070660:intron 30.0%
! AAAGAGTGTGTTCAATATGT+TGG + chr7_2:66990091-66990110 Msa1070660:intron 30.0%
ACAAGTAATGCATATGCATT+TGG + chr7_2:66990152-66990171 Msa1070660:intron 30.0%
AAGAAAGAGCAAAAGCAAAA+AGG + chr7_2:66990175-66990194 Msa1070660:intron 30.0%
!! CACAATTGATTTTATCAGAG+AGG + chr7_2:66990272-66990291 Msa1070660:intron 30.0%
ATCAGAGAGGAAAATATCAA+TGG + chr7_2:66990285-66990304 Msa1070660:intron 30.0%
TAATCAAGTCTCTTTGATTG+GGG - chr7_2:66990388-66990407 None:intergenic 30.0%
GTAATCAAGTCTCTTTGATT+GGG - chr7_2:66990389-66990408 None:intergenic 30.0%
TGTAATCAAGTCTCTTTGAT+TGG - chr7_2:66990390-66990409 None:intergenic 30.0%
AATCAAAGAGACTTGATTAC+AGG + chr7_2:66990389-66990408 Msa1070660:intron 30.0%
ATCAAAGAGACTTGATTACA+GGG + chr7_2:66990390-66990409 Msa1070660:intron 30.0%
AAGTGATTATATGATCCCTA+TGG + chr7_2:66990467-66990486 Msa1070660:intron 30.0%
ACACAATATGTAGGTTCATT+GGG - chr7_2:66990513-66990532 None:intergenic 30.0%
AACACAATATGTAGGTTCAT+TGG - chr7_2:66990514-66990533 None:intergenic 30.0%
GACAAACAAACACAATATGT+AGG - chr7_2:66990522-66990541 None:intergenic 30.0%
!! AATTTCAGGTATCTTTTGTG+TGG + chr7_2:66990573-66990592 Msa1070660:intron 30.0%
!! ATTTCAGGTATCTTTTGTGT+GGG + chr7_2:66990574-66990593 Msa1070660:intron 30.0%
GAAATTTCAGTAAACTGACT+CGG - chr7_2:66990635-66990654 None:intergenic 30.0%
AGTCAGTTTACTGAAATTTC+AGG + chr7_2:66990635-66990654 Msa1070660:intron 30.0%
!! CTGAAATTTCAGGTATCTTT+TGG + chr7_2:66990645-66990664 Msa1070660:intron 30.0%
GTCAAAATAACAAAAGGAGA+GGG - chr7_2:66990754-66990773 None:intergenic 30.0%
AGTCAAAATAACAAAAGGAG+AGG - chr7_2:66990755-66990774 None:intergenic 30.0%
ACTTATGAAGTTAGTTCAAC+TGG - chr7_2:66990927-66990946 None:intergenic 30.0%
!!! GATGGAGACTTTATTTTTGG+AGG - chr7_2:66988583-66988602 None:intergenic 35.0%
!!! CTCGATGGAGACTTTATTTT+TGG - chr7_2:66988586-66988605 None:intergenic 35.0%
TCACAGTTAACACAAGTGAT+TGG - chr7_2:66988655-66988674 None:intergenic 35.0%
TGATCACTTTGAATCAGCAA+GGG - chr7_2:66988770-66988789 None:intergenic 35.0%
TTGATCACTTTGAATCAGCA+AGG - chr7_2:66988771-66988790 None:intergenic 35.0%
TGCTTGGGAAAAAATATTGC+AGG - chr7_2:66988815-66988834 None:intergenic 35.0%
GTGCTAGAAATGACAAACTT+TGG + chr7_2:66988875-66988894 Msa1070660:five_prime_UTR 35.0%
!! AACTTTGGAATGGTAAAGTG+TGG + chr7_2:66988890-66988909 Msa1070660:five_prime_UTR 35.0%
!! ACTTTGGAATGGTAAAGTGT+GGG + chr7_2:66988891-66988910 Msa1070660:five_prime_UTR 35.0%
CAATAACAAAAGCTCCAAGA+TGG - chr7_2:66989086-66989105 None:intergenic 35.0%
! TTGTTATTGCCAAATCCTCT+TGG + chr7_2:66989097-66989116 Msa1070660:CDS 35.0%
AGGGTTAGACAACAATGAAA+GGG + chr7_2:66989489-66989508 Msa1070660:intron 35.0%
!! CCTCATCAAGTTGTTTTACA+TGG - chr7_2:66989915-66989934 None:intergenic 35.0%
CCATGTAAAACAACTTGATG+AGG + chr7_2:66989912-66989931 Msa1070660:CDS 35.0%
! GGAATTCAAGGGTCTATTTT+TGG + chr7_2:66990209-66990228 Msa1070660:intron 35.0%
TTGGTTGATCAACATCCATA+GGG - chr7_2:66990485-66990504 None:intergenic 35.0%
ATTGGTTGATCAACATCCAT+AGG - chr7_2:66990486-66990505 None:intergenic 35.0%
!!! CTCGCTATTTTTATCTGTGT+TGG + chr7_2:66991048-66991067 Msa1070660:three_prime_UTR 35.0%
!! ATTTTTATCTGTGTTGGCCT+AGG + chr7_2:66991054-66991073 Msa1070660:three_prime_UTR 35.0%
!!! GACTTTATTTTTGGAGGGAG+AGG - chr7_2:66988577-66988596 None:intergenic 40.0%
! TGCCACATTCTTTTCTCTTG+CGG + chr7_2:66988694-66988713 Msa1070660:five_prime_UTR 40.0%
! TCTGCAGAAGCTGGATATTT+TGG + chr7_2:66988732-66988751 Msa1070660:five_prime_UTR 40.0%
TCAATTCGCTCTGTTCTCTT+TGG + chr7_2:66988787-66988806 Msa1070660:five_prime_UTR 40.0%
!! CCTTTGAGATAACCTGTCTA+AGG - chr7_2:66989000-66989019 None:intergenic 40.0%
CCTTAGACAGGTTATCTCAA+AGG + chr7_2:66988997-66989016 Msa1070660:five_prime_UTR 40.0%
AGGTTATCTCAAAGGCAATG+TGG + chr7_2:66989005-66989024 Msa1070660:five_prime_UTR 40.0%
GGTTATCTCAAAGGCAATGT+GGG + chr7_2:66989006-66989025 Msa1070660:five_prime_UTR 40.0%
TTCCAAGAGATGCATACAGT+AGG + chr7_2:66989039-66989058 Msa1070660:exon 40.0%
TTCCTACTGTATGCATCTCT+TGG - chr7_2:66989044-66989063 None:intergenic 40.0%
ATGTGTGTTACAGACCATCT+TGG + chr7_2:66989069-66989088 Msa1070660:CDS 40.0%
CTTATTAAGCATCCTGTGCA+TGG - chr7_2:66989175-66989194 None:intergenic 40.0%
CATGCACAGGATGCTTAATA+AGG + chr7_2:66989173-66989192 Msa1070660:CDS 40.0%
CAGTCAATCACATTACACTG+AGG - chr7_2:66989358-66989377 None:intergenic 40.0%
AGATCATTCTTCCACTCTTG+AGG + chr7_2:66989463-66989482 Msa1070660:intron 40.0%
CAGGGTTAGACAACAATGAA+AGG + chr7_2:66989488-66989507 Msa1070660:intron 40.0%
! TGCTTCTGGTTATGCATACT+AGG + chr7_2:66989833-66989852 Msa1070660:intron 40.0%
TTCGCTGAAGATTCAAAGCA+AGG + chr7_2:66989946-66989965 Msa1070660:CDS 40.0%
! TTCAGGTTTAGGGTGACAAT+AGG - chr7_2:66990337-66990356 None:intergenic 40.0%
!!! GCATGCACTTTTCAGGTTTA+GGG - chr7_2:66990347-66990366 None:intergenic 40.0%
!!! TGCATGCACTTTTCAGGTTT+AGG - chr7_2:66990348-66990367 None:intergenic 40.0%
TTGATTACAGGGATAGAGAC+TGG + chr7_2:66990401-66990420 Msa1070660:intron 40.0%
TGATTACAGGGATAGAGACT+GGG + chr7_2:66990402-66990421 Msa1070660:intron 40.0%
GTAGGTTCATTGGGATCAAT+TGG - chr7_2:66990504-66990523 None:intergenic 40.0%
!! TGTTATTCTTGATAGTGCCG+AGG + chr7_2:66990786-66990805 Msa1070660:intron 40.0%
TGGTTCCACTATTCATGTGT+TGG + chr7_2:66990816-66990835 Msa1070660:CDS 40.0%
TTAGGCCAACACATGAATAG+TGG - chr7_2:66990824-66990843 None:intergenic 40.0%
TGAACCTTGTCTCTTGTGTT+AGG - chr7_2:66990842-66990861 None:intergenic 40.0%
AACACAAGAGACAAGGTTCA+AGG + chr7_2:66990842-66990861 Msa1070660:CDS 40.0%
ACACAAGAGACAAGGTTCAA+GGG + chr7_2:66990843-66990862 Msa1070660:CDS 40.0%
TGTGGTAGTAATCTGCAAGT+TGG - chr7_2:66990882-66990901 None:intergenic 40.0%
!!! CGTCTTTTTCTGGTTAAGCT+GGG - chr7_2:66990996-66991015 None:intergenic 40.0%
!!! ACGTCTTTTTCTGGTTAAGC+TGG - chr7_2:66990997-66991016 None:intergenic 40.0%
AGCTTAACCAGAAAAAGACG+TGG + chr7_2:66990996-66991015 Msa1070660:three_prime_UTR 40.0%
GCTTAACCAGAAAAAGACGT+GGG + chr7_2:66990997-66991016 Msa1070660:three_prime_UTR 40.0%
! TCAAATCCCACGTCTTTTTC+TGG - chr7_2:66991006-66991025 None:intergenic 40.0%
AACGAGTCATGAAAGAGACA+TGG - chr7_2:66991083-66991102 None:intergenic 40.0%
TTCTTCGGTAGAGACCATAC+AGG - chr7_2:66988621-66988640 None:intergenic 45.0%
GCAAGAGAAAAGAATGTGGC+AGG - chr7_2:66988695-66988714 None:intergenic 45.0%
TCTGCAGAACTGATACAGCT+AGG - chr7_2:66988720-66988739 None:intergenic 45.0%
TGTATCAGTTCTGCAGAAGC+TGG + chr7_2:66988723-66988742 Msa1070660:five_prime_UTR 45.0%
TTTCCCAAGCAAACTTGCAG+CGG + chr7_2:66988824-66988843 Msa1070660:five_prime_UTR 45.0%
ACTTCCTTGCAGATCGAACT+TGG + chr7_2:66988944-66988963 Msa1070660:five_prime_UTR 45.0%
CTTCCTTGCAGATCGAACTT+GGG + chr7_2:66988945-66988964 Msa1070660:five_prime_UTR 45.0%
GAGATGCATACAGTAGGAAC+AGG + chr7_2:66989045-66989064 Msa1070660:exon 45.0%
ATTGCCAAATCCTCTTGGTC+TGG + chr7_2:66989102-66989121 Msa1070660:CDS 45.0%
GCTTGGATGGAAGTCAATGA+AGG + chr7_2:66989126-66989145 Msa1070660:CDS 45.0%
GATGGAAGTCAATGAAGGAG+TGG + chr7_2:66989131-66989150 Msa1070660:CDS 45.0%
CAGGATGCTTAATAAGGCAG+AGG + chr7_2:66989179-66989198 Msa1070660:CDS 45.0%
GCTTAATAAGGCAGAGGCAA+AGG + chr7_2:66989185-66989204 Msa1070660:CDS 45.0%
! TACACTGAGGCATTCCACTA+AGG - chr7_2:66989345-66989364 None:intergenic 45.0%
CCAAGAGATCTCTAGTGAGA+TGG - chr7_2:66989438-66989457 None:intergenic 45.0%
CCATCTCACTAGAGATCTCT+TGG + chr7_2:66989435-66989454 Msa1070660:intron 45.0%
CTCACTAGAGATCTCTTGGT+TGG + chr7_2:66989439-66989458 Msa1070660:intron 45.0%
TTCTTCCACTCTTGAGGTAC+AGG + chr7_2:66989469-66989488 Msa1070660:intron 45.0%
TCTTCCACTCTTGAGGTACA+GGG + chr7_2:66989470-66989489 Msa1070660:intron 45.0%
! GTTTAGGGTGACAATAGGCA+GGG - chr7_2:66990332-66990351 None:intergenic 45.0%
! CATGCATGCATGCACTTTTC+AGG - chr7_2:66990354-66990373 None:intergenic 45.0%
AGTGCATGCATGCATGCATA+TGG + chr7_2:66990358-66990377 Msa1070660:intron 45.0%
TTGAAACTAATGCCTCCACC+AGG + chr7_2:66990434-66990453 Msa1070660:intron 45.0%
AATCACTTCTTATGGCCTCC+TGG - chr7_2:66990455-66990474 None:intergenic 45.0%
TGAACTTTGCTCTCTTGTGC+TGG + chr7_2:66990706-66990725 Msa1070660:intron 45.0%
!! TATTCTTGATAGTGCCGAGG+AGG + chr7_2:66990789-66990808 Msa1070660:intron 45.0%
TTGGCCTAACACAAGAGACA+AGG + chr7_2:66990835-66990854 Msa1070660:CDS 45.0%
AGACAAGGTTCAAGGGAAAG+TGG + chr7_2:66990850-66990869 Msa1070660:CDS 45.0%
! TTTATCTGTGTTGGCCTAGG+AGG + chr7_2:66991057-66991076 Msa1070660:three_prime_UTR 45.0%
AGATGTCCTCCCTACCTGTA+TGG + chr7_2:66988604-66988623 Msa1070660:five_prime_UTR 50.0%
TAGAGACCATACAGGTAGGG+AGG - chr7_2:66988613-66988632 None:intergenic 50.0%
CGGTAGAGACCATACAGGTA+GGG - chr7_2:66988616-66988635 None:intergenic 50.0%
TCGGTAGAGACCATACAGGT+AGG - chr7_2:66988617-66988636 None:intergenic 50.0%
GGCCGCAAGAGAAAAGAATG+TGG - chr7_2:66988699-66988718 None:intergenic 50.0%
! GAACCGCTGCAAGTTTGCTT+GGG - chr7_2:66988830-66988849 None:intergenic 50.0%
! AGAACCGCTGCAAGTTTGCT+TGG - chr7_2:66988831-66988850 None:intergenic 50.0%
GTAAAGTGTGGGATGCGAAC+TGG + chr7_2:66988902-66988921 Msa1070660:five_prime_UTR 50.0%
TTGCCCAAGTTCGATCTGCA+AGG - chr7_2:66988951-66988970 None:intergenic 50.0%
! CCTGTCTAAGGCTCATGCTT+GGG - chr7_2:66988988-66989007 None:intergenic 50.0%
! ACCTGTCTAAGGCTCATGCT+TGG - chr7_2:66988989-66989008 None:intergenic 50.0%
AGCACCAGACCAAGAGGATT+TGG - chr7_2:66989109-66989128 None:intergenic 50.0%
AATCCTCTTGGTCTGGTGCT+TGG + chr7_2:66989109-66989128 Msa1070660:CDS 50.0%
! TCCTGTGCATGGCTTGCAAA+AGG - chr7_2:66989164-66989183 None:intergenic 50.0%
CTAACCCTGTACCTCAAGAG+TGG - chr7_2:66989477-66989496 None:intergenic 50.0%
! GGTTTAGGGTGACAATAGGC+AGG - chr7_2:66990333-66990352 None:intergenic 50.0%
AAACTAATGCCTCCACCAGG+AGG + chr7_2:66990437-66990456 Msa1070660:intron 50.0%
AGTGGAACCATTCACCTCCT+CGG - chr7_2:66990806-66990825 None:intergenic 50.0%
TGAAAGAGACATGGCCTCCT+AGG - chr7_2:66991074-66991093 None:intergenic 50.0%
AGGTAGGGAGGACATCTCGA+TGG - chr7_2:66988601-66988620 None:intergenic 55.0%
CCCAAGCATGAGCCTTAGAC+AGG + chr7_2:66988985-66989004 Msa1070660:five_prime_UTR 55.0%
CATCCAAGCACCAGACCAAG+AGG - chr7_2:66989115-66989134 None:intergenic 55.0%
CTCTTGGTCTGGTGCTTGGA+TGG + chr7_2:66989113-66989132 Msa1070660:CDS 55.0%
! GCCTTTTGCAAGCCATGCAC+AGG + chr7_2:66989160-66989179 Msa1070660:CDS 55.0%
AGGGTGACAATAGGCAGGGA+GGG - chr7_2:66990328-66990347 None:intergenic 55.0%
TAGGGTGACAATAGGCAGGG+AGG - chr7_2:66990329-66990348 None:intergenic 55.0%
TTCTTATGGCCTCCTGGTGG+AGG - chr7_2:66990449-66990468 None:intergenic 55.0%
CACTTCTTATGGCCTCCTGG+TGG - chr7_2:66990452-66990471 None:intergenic 55.0%
! GATAGTGCCGAGGAGGTGAA+TGG + chr7_2:66990796-66990815 Msa1070660:intron 55.0%
GGCAGGGAGGGGAGAATTAC+AGG - chr7_2:66990316-66990335 None:intergenic 60.0%
GGGTGACAATAGGCAGGGAG+GGG - chr7_2:66990327-66990346 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 66988571 66991118 66988571 ID=Msa1070660;Name=Msa1070660
chr7_2 mRNA 66988571 66991118 66988571 ID=Msa1070660-mRNA-1;Parent=Msa1070660;Name=Msa1070660-mRNA-1;_AED=0.15;_eAED=0.15;_QI=477|0.25|0.6|1|0.5|0.6|5|207|132
chr7_2 exon 66988571 66989206 66988571 ID=Msa1070660-mRNA-1:exon:14449;Parent=Msa1070660-mRNA-1
chr7_2 exon 66989904 66989967 66989904 ID=Msa1070660-mRNA-1:exon:14450;Parent=Msa1070660-mRNA-1
chr7_2 exon 66990290 66990315 66990290 ID=Msa1070660-mRNA-1:exon:14451;Parent=Msa1070660-mRNA-1
chr7_2 exon 66990657 66990695 66990657 ID=Msa1070660-mRNA-1:exon:14452;Parent=Msa1070660-mRNA-1
chr7_2 exon 66990801 66991118 66990801 ID=Msa1070660-mRNA-1:exon:14453;Parent=Msa1070660-mRNA-1
chr7_2 five_prime_UTR 66988571 66989047 66988571 ID=Msa1070660-mRNA-1:five_prime_utr;Parent=Msa1070660-mRNA-1
chr7_2 CDS 66989048 66989206 66989048 ID=Msa1070660-mRNA-1:cds;Parent=Msa1070660-mRNA-1
chr7_2 CDS 66989904 66989967 66989904 ID=Msa1070660-mRNA-1:cds;Parent=Msa1070660-mRNA-1
chr7_2 CDS 66990290 66990315 66990290 ID=Msa1070660-mRNA-1:cds;Parent=Msa1070660-mRNA-1
chr7_2 CDS 66990657 66990695 66990657 ID=Msa1070660-mRNA-1:cds;Parent=Msa1070660-mRNA-1
chr7_2 CDS 66990801 66990911 66990801 ID=Msa1070660-mRNA-1:cds;Parent=Msa1070660-mRNA-1
chr7_2 three_prime_UTR 66990912 66991118 66990912 ID=Msa1070660-mRNA-1:three_prime_utr;Parent=Msa1070660-mRNA-1
Gene Sequence

>Msa1070660

ATGCATACAGTAGGAACAGGAATGTGTGTTACAGACCATCTTGGAGCTTTTGTTATTGCCAAATCCTCTTGGTCTGGTGCTTGGATGGAAGTCAATGAAGGAGTGGCTTTTAGCCTTTTGCAAGCCATGCACAGGATGCTTAATAAGGCAGAGGCAAAGATAGATAACCATGTAAAACAACTTGATGAGGATTTAAACTACTTCGCTGAAGATTCAAAGCAAGAGAGGAAAATATCAATGGATGAACCTGTATCTTTTGGAGATATGATTGCTTGTGACAACGAAAATTGCCGAGGAGGTGAATGGTTCCACTATTCATGTGTTGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACTACCACAATGTCAATGA
Protein sequence

>Msa1070660

MHTVGTGMCVTDHLGAFVIAKSSWSGAWMEVNEGVAFSLLQAMHRMLNKAEAKIDNHVKQLDEDLNYFAEDSKQERKISMDEPVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ*