Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071600 | XP_039683934.1 | 92.105 | 266 | 16 | 3 | 1 | 264 | 1 | 263 | 6.71e-162 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071600 | A0A396H587 | 92.157 | 255 | 15 | 3 | 12 | 264 | 1 | 252 | 8.94e-154 | 439 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1071600 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071600 | MtrunA17_Chr7g0255491 | 92.157 | 255 | 15 | 3 | 12 | 264 | 1 | 252 | 1.72e-157 | 439 |
| Msa1071600 | MtrunA17_Chr3g0081141 | 28.767 | 219 | 136 | 7 | 78 | 287 | 98 | 305 | 9.03e-15 | 73.2 |
| Msa1071600 | MtrunA17_Chr2g0310101 | 40.816 | 98 | 51 | 4 | 78 | 168 | 59 | 156 | 3.95e-14 | 70.1 |
| Msa1071600 | MtrunA17_Chr7g0239711 | 32.515 | 163 | 87 | 7 | 76 | 228 | 55 | 204 | 1.26e-12 | 65.9 |
| Msa1071600 | MtrunA17_Chr3g0079671 | 27.074 | 229 | 127 | 7 | 78 | 287 | 98 | 305 | 4.53e-12 | 65.5 |
| Msa1071600 | MtrunA17_Chr7g0224221 | 44.286 | 70 | 29 | 2 | 78 | 137 | 148 | 217 | 6.02e-12 | 65.5 |
| Msa1071600 | MtrunA17_Chr5g0396031 | 40.449 | 89 | 35 | 3 | 77 | 157 | 45 | 123 | 6.68e-12 | 65.5 |
| Msa1071600 | MtrunA17_Chr3g0081131 | 27.660 | 235 | 109 | 8 | 78 | 287 | 98 | 296 | 1.06e-11 | 64.3 |
| Msa1071600 | MtrunA17_Chr1g0161901 | 41.509 | 106 | 46 | 6 | 11 | 110 | 34 | 129 | 2.41e-11 | 62.8 |
| Msa1071600 | MtrunA17_Chr1g0149811 | 37.190 | 121 | 70 | 3 | 62 | 182 | 79 | 193 | 9.36e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071600 | AT5G25160.1 | 40.000 | 105 | 45 | 3 | 78 | 182 | 59 | 145 | 3.59e-11 | 62.4 |
Find 98 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGGATGAATAATTTA+TGG | 0.162779 | 7_2:-68365935 | Msa1071600:CDS |
| TCCCTTGCAACACCACAATT+TGG | 0.181385 | 7_2:-68365951 | Msa1071600:CDS |
| TGAACAATTCCTTGCCTTCT+TGG | 0.192209 | 7_2:-68366064 | Msa1071600:CDS |
| TGGCTTGGTGGTTCATCTTC+TGG | 0.227050 | 7_2:-68366044 | Msa1071600:CDS |
| CGTGACGCAGGAGGTGTATT+TGG | 0.248631 | 7_2:+68365999 | None:intergenic |
| TCAGAAGATGCCTCAGAAAT+TGG | 0.273890 | 7_2:+68365825 | None:intergenic |
| CTGTCATCTTCATCTTCAAT+AGG | 0.321326 | 7_2:+68365759 | None:intergenic |
| TTGGAGAATGGTGAGCATTC+AGG | 0.322095 | 7_2:-68366386 | Msa1071600:CDS |
| CAAGTTCAGTTCCTCCTCAT+TGG | 0.324355 | 7_2:+68365722 | None:intergenic |
| AATTCCTTGCCTTCTTGGCT+TGG | 0.353374 | 7_2:-68366059 | Msa1071600:CDS |
| CCCTTGCAACACCACAATTT+GGG | 0.353563 | 7_2:-68365950 | Msa1071600:CDS |
| GAGGTTGGTGGTGATGTCTT+TGG | 0.357363 | 7_2:+68366476 | None:intergenic |
| ATTTGGGATGAATAATTTAT+GGG | 0.357825 | 7_2:-68365934 | Msa1071600:CDS |
| AAGTTCAGTTCCTCCTCATT+GGG | 0.363891 | 7_2:+68365723 | None:intergenic |
| TCCTTGCCTTCTTGGCTTGG+TGG | 0.368207 | 7_2:-68366056 | Msa1071600:CDS |
| CTCACCATTCTCCAAGGGTT+TGG | 0.371444 | 7_2:+68366394 | None:intergenic |
| GAGATCAAACACTGTGGGTT+TGG | 0.396502 | 7_2:-68365877 | Msa1071600:CDS |
| GGTTCATCTTCTGGTGGCTA+TGG | 0.403832 | 7_2:-68366035 | Msa1071600:CDS |
| TGTTCACATGGGAACCAATT+GGG | 0.426738 | 7_2:+68366081 | None:intergenic |
| TTCCCCACTTCTCAAGCGCT+TGG | 0.427846 | 7_2:-68366284 | Msa1071600:CDS |
| GAATATTAGATCGATACCTT+AGG | 0.431642 | 7_2:+68366180 | None:intergenic |
| GCGCAAAATGATGGAGGATT+CGG | 0.431644 | 7_2:-68366525 | Msa1071600:CDS |
| TTGTTCACATGGGAACCAAT+TGG | 0.439864 | 7_2:+68366080 | None:intergenic |
| AATTCCTTCACTTGCGGCAC+AGG | 0.441324 | 7_2:+68366332 | None:intergenic |
| CAATGAGGAGGAACTGAACT+TGG | 0.445260 | 7_2:-68365721 | Msa1071600:CDS |
| TTCACTTGCGGCACAGGTGG+AGG | 0.445355 | 7_2:+68366338 | None:intergenic |
| GGAGAGCTTGAAAATTGATA+AGG | 0.446609 | 7_2:+68366149 | None:intergenic |
| GATTTCTTGACCTTGAGGCT+TGG | 0.452474 | 7_2:-68366437 | Msa1071600:CDS |
| GCTCACGCTTATGAGCGTTT+TGG | 0.454295 | 7_2:+68366255 | None:intergenic |
| TTCTTGACCTTGAGGCTTGG+CGG | 0.462476 | 7_2:-68366434 | Msa1071600:CDS |
| CCCACTTCTCAAGCGCTTGG+AGG | 0.464114 | 7_2:-68366281 | Msa1071600:CDS |
| TCATCTTCTGGTGGCTATGG+AGG | 0.469395 | 7_2:-68366032 | Msa1071600:CDS |
| CCAACCTCTGGATCGGATGC+TGG | 0.471452 | 7_2:-68366461 | Msa1071600:CDS |
| ATTCTCCAAGGGTTTGGAAG+TGG | 0.473353 | 7_2:+68366400 | None:intergenic |
| GAGAGCTTGAAAATTGATAA+GGG | 0.474183 | 7_2:+68366150 | None:intergenic |
| AAACCTCAAGCGCAAAATGA+TGG | 0.477017 | 7_2:-68366534 | Msa1071600:CDS |
| CTTGAAAATTGATAAGGGTA+TGG | 0.487010 | 7_2:+68366155 | None:intergenic |
| TTCGGAGCAAGAGTCGAAAT+CGG | 0.492293 | 7_2:-68366507 | Msa1071600:CDS |
| AATTTCTGAGGCATCTTCTG+AGG | 0.495312 | 7_2:-68365823 | Msa1071600:CDS |
| TCCTTCACTTGCGGCACAGG+TGG | 0.495412 | 7_2:+68366335 | None:intergenic |
| AAGACATCACCACCAACCTC+TGG | 0.499816 | 7_2:-68366473 | Msa1071600:CDS |
| TCCCAAATTGTGGTGTTGCA+AGG | 0.499889 | 7_2:+68365949 | None:intergenic |
| GCTAGCCTGTCCAACCCAAT+TGG | 0.500395 | 7_2:-68366095 | Msa1071600:CDS |
| TTCTCCAAGGGTTTGGAAGT+GGG | 0.501108 | 7_2:+68366401 | None:intergenic |
| AATATTAGATCGATACCTTA+GGG | 0.503430 | 7_2:+68366181 | None:intergenic |
| CATCTTCTGGTGGCTATGGA+GGG | 0.505349 | 7_2:-68366031 | Msa1071600:CDS |
| GGGAACCAATTGGGTTGGAC+AGG | 0.508826 | 7_2:+68366090 | None:intergenic |
| ACTTCCAAACCCTTGGAGAA+TGG | 0.510882 | 7_2:-68366398 | Msa1071600:CDS |
| TCCTCCAAGCGCTTGAGAAG+TGG | 0.512717 | 7_2:+68366280 | None:intergenic |
| GATGAACCACCAAGCCAAGA+AGG | 0.518609 | 7_2:+68366050 | None:intergenic |
| CACATGGGAACCAATTGGGT+TGG | 0.519779 | 7_2:+68366085 | None:intergenic |
| GCAAGAGTCGAAATCGGAGA+AGG | 0.519914 | 7_2:-68366501 | Msa1071600:CDS |
| AAATCCCACTTCCAAACCCT+TGG | 0.521354 | 7_2:-68366405 | Msa1071600:CDS |
| GAAGATGCCTCAGAAATTGG+AGG | 0.529710 | 7_2:+68365828 | None:intergenic |
| CTGGCGATTTCTTGACCTTG+AGG | 0.533323 | 7_2:-68366442 | Msa1071600:CDS |
| TTGACCTTGAGGCTTGGCGG+TGG | 0.537816 | 7_2:-68366431 | Msa1071600:CDS |
| CCTCCAAGCGCTTGAGAAGT+GGG | 0.545861 | 7_2:+68366281 | None:intergenic |
| TACGGAAATATGAATACCCT+TGG | 0.547864 | 7_2:+68366120 | None:intergenic |
| ATGAATAATTTATGGGGTGG+AGG | 0.548808 | 7_2:-68365927 | Msa1071600:CDS |
| GGGATGAATAATTTATGGGG+TGG | 0.553703 | 7_2:-68365930 | Msa1071600:CDS |
| CTTGGTGGTTCATCTTCTGG+TGG | 0.555595 | 7_2:-68366041 | Msa1071600:CDS |
| AATGGAAGAACAAAGGAGAG+AGG | 0.557192 | 7_2:-68366219 | Msa1071600:CDS |
| TATGAATACCCTTGGTAGTG+TGG | 0.561783 | 7_2:+68366128 | None:intergenic |
| CCCAAATTGTGGTGTTGCAA+GGG | 0.562024 | 7_2:+68365950 | None:intergenic |
| TCCACCTGTGCCGCAAGTGA+AGG | 0.562222 | 7_2:-68366336 | Msa1071600:CDS |
| AAATTATTCATCCCAAATTG+TGG | 0.569543 | 7_2:+68365939 | None:intergenic |
| TGAATGCTCACCATTCTCCA+AGG | 0.576662 | 7_2:+68366388 | None:intergenic |
| ACCACCAAGCCAAGAAGGCA+AGG | 0.577515 | 7_2:+68366055 | None:intergenic |
| GTGTTTGATCTCTGTGGAGT+TGG | 0.579156 | 7_2:+68365888 | None:intergenic |
| ATGTGATCGATTCAGCCCTA+AGG | 0.581100 | 7_2:-68366196 | Msa1071600:CDS |
| CAAGCTCTCCACACTACCAA+GGG | 0.581296 | 7_2:-68366136 | Msa1071600:CDS |
| ATCACCACCAACCTCTGGAT+CGG | 0.589780 | 7_2:-68366468 | Msa1071600:CDS |
| GAATGCTCACCATTCTCCAA+GGG | 0.590384 | 7_2:+68366389 | None:intergenic |
| CCAGCATCCGATCCAGAGGT+TGG | 0.592460 | 7_2:+68366461 | None:intergenic |
| CAAGAGAATTCCTTCACTTG+CGG | 0.593057 | 7_2:+68366326 | None:intergenic |
| TCAAGCTCTCCACACTACCA+AGG | 0.596295 | 7_2:-68366137 | Msa1071600:CDS |
| TTTGGGATGAATAATTTATG+GGG | 0.599177 | 7_2:-68365933 | Msa1071600:CDS |
| TGTGCCACCGCCAAGCCTCA+AGG | 0.601323 | 7_2:+68366427 | None:intergenic |
| AAGATGCCTCAGAAATTGGA+GGG | 0.602431 | 7_2:+68365829 | None:intergenic |
| GCATCCGATCCAGAGGTTGG+TGG | 0.602933 | 7_2:+68366464 | None:intergenic |
| GGCATCACAAATCGTGACGC+AGG | 0.604137 | 7_2:+68365987 | None:intergenic |
| AAGGCAAGGAATTGTTCACA+TGG | 0.612872 | 7_2:+68366069 | None:intergenic |
| AGATGAAGATGACAGAAATG+AGG | 0.616572 | 7_2:-68365751 | Msa1071600:CDS |
| GGTTGGACAGGCTAGCACTA+CGG | 0.617508 | 7_2:+68366102 | None:intergenic |
| ATCGCCAGCATCCGATCCAG+AGG | 0.630563 | 7_2:+68366457 | None:intergenic |
| CTCCAAGCGCTTGAGAAGTG+GGG | 0.636012 | 7_2:+68366282 | None:intergenic |
| TCAAACCCCTCCAATTTCTG+AGG | 0.642241 | 7_2:-68365835 | Msa1071600:CDS |
| CCACAGAGATCAAACACTGT+GGG | 0.643895 | 7_2:-68365882 | Msa1071600:CDS |
| CCCACAGTGTTTGATCTCTG+TGG | 0.650296 | 7_2:+68365882 | None:intergenic |
| ATCACAAATCGTGACGCAGG+AGG | 0.651769 | 7_2:+68365990 | None:intergenic |
| AGATGCCTCAGAAATTGGAG+GGG | 0.652285 | 7_2:+68365830 | None:intergenic |
| TGAGGCTAATCCCAATGAGG+AGG | 0.655080 | 7_2:-68365733 | Msa1071600:CDS |
| CCTCAAGCGCAAAATGATGG+AGG | 0.656497 | 7_2:-68366531 | Msa1071600:CDS |
| GCAAGGGATGAATTTGACAA+TGG | 0.667223 | 7_2:+68365966 | None:intergenic |
| TCTTCAATAGGATCATGAGA+AGG | 0.673021 | 7_2:+68365771 | None:intergenic |
| AAATGAGGCTAATCCCAATG+AGG | 0.702908 | 7_2:-68365736 | Msa1071600:CDS |
| AGGCAAGGAATTGTTCACAT+GGG | 0.705162 | 7_2:+68366070 | None:intergenic |
| TCCACAGAGATCAAACACTG+TGG | 0.733122 | 7_2:-68365883 | Msa1071600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGGGATGAATAATTTA+TGG | - | chr7_2:68366320-68366339 | Msa1071600:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | - | chr7_2:68366321-68366340 | Msa1071600:CDS | 20.0% |
| !!! | AATTTGGGATGAATAATTTA+TGG | - | chr7_2:68366320-68366339 | Msa1071600:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | - | chr7_2:68366321-68366340 | Msa1071600:CDS | 20.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | - | chr7_2:68366029-68366048 | Msa1071600:CDS | 25.0% |
| ! | AATATTAGATCGATACCTTA+GGG | + | chr7_2:68366077-68366096 | None:intergenic | 25.0% |
| ! | AAATTATTCATCCCAAATTG+TGG | + | chr7_2:68366319-68366338 | None:intergenic | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | - | chr7_2:68366322-68366341 | Msa1071600:CDS | 25.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | - | chr7_2:68366029-68366048 | Msa1071600:CDS | 25.0% |
| ! | AATATTAGATCGATACCTTA+GGG | + | chr7_2:68366077-68366096 | None:intergenic | 25.0% |
| ! | AAATTATTCATCCCAAATTG+TGG | + | chr7_2:68366319-68366338 | None:intergenic | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | - | chr7_2:68366322-68366341 | Msa1071600:CDS | 25.0% |
| GAATATTAGATCGATACCTT+AGG | + | chr7_2:68366078-68366097 | None:intergenic | 30.0% | |
| CTTGAAAATTGATAAGGGTA+TGG | + | chr7_2:68366103-68366122 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | + | chr7_2:68366108-68366127 | None:intergenic | 30.0% | |
| GAATATTAGATCGATACCTT+AGG | + | chr7_2:68366078-68366097 | None:intergenic | 30.0% | |
| CTTGAAAATTGATAAGGGTA+TGG | + | chr7_2:68366103-68366122 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | + | chr7_2:68366108-68366127 | None:intergenic | 30.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | - | chr7_2:68366018-68366037 | Msa1071600:CDS | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | + | chr7_2:68366109-68366128 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | + | chr7_2:68366138-68366157 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | - | chr7_2:68366328-68366347 | Msa1071600:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | + | chr7_2:68366487-68366506 | None:intergenic | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | + | chr7_2:68366499-68366518 | None:intergenic | 35.0% | |
| AGATGAAGATGACAGAAATG+AGG | - | chr7_2:68366504-68366523 | Msa1071600:CDS | 35.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | - | chr7_2:68366018-68366037 | Msa1071600:CDS | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | + | chr7_2:68366109-68366128 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | + | chr7_2:68366138-68366157 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | - | chr7_2:68366328-68366347 | Msa1071600:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | + | chr7_2:68366487-68366506 | None:intergenic | 35.0% | |
| CTGTCATCTTCATCTTCAAT+AGG | + | chr7_2:68366499-68366518 | None:intergenic | 35.0% | |
| AGATGAAGATGACAGAAATG+AGG | - | chr7_2:68366504-68366523 | Msa1071600:CDS | 35.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | - | chr7_2:68365721-68365740 | Msa1071600:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | + | chr7_2:68365932-68365951 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | - | chr7_2:68366036-68366055 | Msa1071600:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | + | chr7_2:68366130-68366149 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | + | chr7_2:68366177-68366196 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | + | chr7_2:68366178-68366197 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | + | chr7_2:68366188-68366207 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | + | chr7_2:68366189-68366208 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | - | chr7_2:68366191-68366210 | Msa1071600:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAA+TGG | + | chr7_2:68366292-68366311 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | - | chr7_2:68366325-68366344 | Msa1071600:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | + | chr7_2:68366429-68366448 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | + | chr7_2:68366433-68366452 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | - | chr7_2:68366432-68366451 | Msa1071600:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | - | chr7_2:68366519-68366538 | Msa1071600:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | + | chr7_2:68366535-68366554 | None:intergenic | 40.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | - | chr7_2:68365721-68365740 | Msa1071600:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | + | chr7_2:68365932-68365951 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | - | chr7_2:68366036-68366055 | Msa1071600:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | + | chr7_2:68366130-68366149 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | + | chr7_2:68366177-68366196 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | + | chr7_2:68366178-68366197 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | + | chr7_2:68366188-68366207 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | + | chr7_2:68366189-68366208 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | - | chr7_2:68366191-68366210 | Msa1071600:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAA+TGG | + | chr7_2:68366292-68366311 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | - | chr7_2:68366325-68366344 | Msa1071600:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | + | chr7_2:68366429-68366448 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | + | chr7_2:68366433-68366452 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | - | chr7_2:68366432-68366451 | Msa1071600:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | - | chr7_2:68366519-68366538 | Msa1071600:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | + | chr7_2:68366535-68366554 | None:intergenic | 40.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | - | chr7_2:68365730-68365749 | Msa1071600:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | - | chr7_2:68365748-68365767 | Msa1071600:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | - | chr7_2:68365818-68365837 | Msa1071600:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | - | chr7_2:68365850-68365869 | Msa1071600:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | + | chr7_2:68365857-68365876 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | + | chr7_2:68365858-68365877 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | - | chr7_2:68365857-68365876 | Msa1071600:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | + | chr7_2:68365869-68365888 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | + | chr7_2:68365870-68365889 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | - | chr7_2:68365869-68365888 | Msa1071600:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | - | chr7_2:68366059-68366078 | Msa1071600:CDS | 45.0% |
| AATTCCTTGCCTTCTTGGCT+TGG | - | chr7_2:68366196-68366215 | Msa1071600:CDS | 45.0% | |
| TCCCTTGCAACACCACAATT+TGG | - | chr7_2:68366304-68366323 | Msa1071600:CDS | 45.0% | |
| !! | CCCAAATTGTGGTGTTGCAA+GGG | + | chr7_2:68366308-68366327 | None:intergenic | 45.0% |
| CCCTTGCAACACCACAATTT+GGG | - | chr7_2:68366305-68366324 | Msa1071600:CDS | 45.0% | |
| !! | TCCCAAATTGTGGTGTTGCA+AGG | + | chr7_2:68366309-68366328 | None:intergenic | 45.0% |
| GTGTTTGATCTCTGTGGAGT+TGG | + | chr7_2:68366370-68366389 | None:intergenic | 45.0% | |
| TCCACAGAGATCAAACACTG+TGG | - | chr7_2:68366372-68366391 | Msa1071600:CDS | 45.0% | |
| CCACAGAGATCAAACACTGT+GGG | - | chr7_2:68366373-68366392 | Msa1071600:CDS | 45.0% | |
| GAGATCAAACACTGTGGGTT+TGG | - | chr7_2:68366378-68366397 | Msa1071600:CDS | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | - | chr7_2:68366420-68366439 | Msa1071600:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | + | chr7_2:68366428-68366447 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | + | chr7_2:68366430-68366449 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | + | chr7_2:68366536-68366555 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | - | chr7_2:68366534-68366553 | Msa1071600:CDS | 45.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | - | chr7_2:68365730-68365749 | Msa1071600:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | - | chr7_2:68365748-68365767 | Msa1071600:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | - | chr7_2:68365818-68365837 | Msa1071600:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | - | chr7_2:68365850-68365869 | Msa1071600:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | + | chr7_2:68365857-68365876 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | + | chr7_2:68365858-68365877 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | - | chr7_2:68365857-68365876 | Msa1071600:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | + | chr7_2:68365869-68365888 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | + | chr7_2:68365870-68365889 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | - | chr7_2:68365869-68365888 | Msa1071600:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | - | chr7_2:68366059-68366078 | Msa1071600:CDS | 45.0% |
| AATTCCTTGCCTTCTTGGCT+TGG | - | chr7_2:68366196-68366215 | Msa1071600:CDS | 45.0% | |
| TCCCTTGCAACACCACAATT+TGG | - | chr7_2:68366304-68366323 | Msa1071600:CDS | 45.0% | |
| !! | CCCAAATTGTGGTGTTGCAA+GGG | + | chr7_2:68366308-68366327 | None:intergenic | 45.0% |
| CCCTTGCAACACCACAATTT+GGG | - | chr7_2:68366305-68366324 | Msa1071600:CDS | 45.0% | |
| !! | TCCCAAATTGTGGTGTTGCA+AGG | + | chr7_2:68366309-68366328 | None:intergenic | 45.0% |
| GTGTTTGATCTCTGTGGAGT+TGG | + | chr7_2:68366370-68366389 | None:intergenic | 45.0% | |
| TCCACAGAGATCAAACACTG+TGG | - | chr7_2:68366372-68366391 | Msa1071600:CDS | 45.0% | |
| CCACAGAGATCAAACACTGT+GGG | - | chr7_2:68366373-68366392 | Msa1071600:CDS | 45.0% | |
| GAGATCAAACACTGTGGGTT+TGG | - | chr7_2:68366378-68366397 | Msa1071600:CDS | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | - | chr7_2:68366420-68366439 | Msa1071600:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | + | chr7_2:68366428-68366447 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | + | chr7_2:68366430-68366449 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | + | chr7_2:68366536-68366555 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | - | chr7_2:68366534-68366553 | Msa1071600:CDS | 45.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | + | chr7_2:68365727-68365746 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | - | chr7_2:68365724-68365743 | Msa1071600:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | - | chr7_2:68365754-68365773 | Msa1071600:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | + | chr7_2:68365782-68365801 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | - | chr7_2:68365782-68365801 | Msa1071600:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | - | chr7_2:68365787-68365806 | Msa1071600:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | - | chr7_2:68365813-68365832 | Msa1071600:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | - | chr7_2:68365821-68365840 | Msa1071600:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | + | chr7_2:68365864-68365883 | None:intergenic | 50.0% | |
| AATTCCTTCACTTGCGGCAC+AGG | + | chr7_2:68365926-68365945 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | + | chr7_2:68366003-68366022 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | - | chr7_2:68366118-68366137 | Msa1071600:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | - | chr7_2:68366119-68366138 | Msa1071600:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | + | chr7_2:68366173-68366192 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | + | chr7_2:68366208-68366227 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | - | chr7_2:68366211-68366230 | Msa1071600:CDS | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | - | chr7_2:68366214-68366233 | Msa1071600:CDS | 50.0% |
| GGTTCATCTTCTGGTGGCTA+TGG | - | chr7_2:68366220-68366239 | Msa1071600:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | - | chr7_2:68366223-68366242 | Msa1071600:CDS | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | - | chr7_2:68366224-68366243 | Msa1071600:CDS | 50.0% | |
| ATCACAAATCGTGACGCAGG+AGG | + | chr7_2:68366268-68366287 | None:intergenic | 50.0% | |
| CCCACAGTGTTTGATCTCTG+TGG | + | chr7_2:68366376-68366395 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | - | chr7_2:68366522-68366541 | Msa1071600:CDS | 50.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | + | chr7_2:68365727-68365746 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | - | chr7_2:68365724-68365743 | Msa1071600:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | - | chr7_2:68365754-68365773 | Msa1071600:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | + | chr7_2:68365782-68365801 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | - | chr7_2:68365782-68365801 | Msa1071600:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | - | chr7_2:68365787-68365806 | Msa1071600:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | - | chr7_2:68365813-68365832 | Msa1071600:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | - | chr7_2:68365821-68365840 | Msa1071600:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | + | chr7_2:68365864-68365883 | None:intergenic | 50.0% | |
| AATTCCTTCACTTGCGGCAC+AGG | + | chr7_2:68365926-68365945 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | + | chr7_2:68366003-68366022 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | - | chr7_2:68366118-68366137 | Msa1071600:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | - | chr7_2:68366119-68366138 | Msa1071600:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | + | chr7_2:68366173-68366192 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | + | chr7_2:68366208-68366227 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+TGG | - | chr7_2:68366211-68366230 | Msa1071600:CDS | 50.0% |
| ! | CTTGGTGGTTCATCTTCTGG+TGG | - | chr7_2:68366214-68366233 | Msa1071600:CDS | 50.0% |
| GGTTCATCTTCTGGTGGCTA+TGG | - | chr7_2:68366220-68366239 | Msa1071600:CDS | 50.0% | |
| TCATCTTCTGGTGGCTATGG+AGG | - | chr7_2:68366223-68366242 | Msa1071600:CDS | 50.0% | |
| CATCTTCTGGTGGCTATGGA+GGG | - | chr7_2:68366224-68366243 | Msa1071600:CDS | 50.0% | |
| ATCACAAATCGTGACGCAGG+AGG | + | chr7_2:68366268-68366287 | None:intergenic | 50.0% | |
| CCCACAGTGTTTGATCTCTG+TGG | + | chr7_2:68366376-68366395 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | - | chr7_2:68366522-68366541 | Msa1071600:CDS | 50.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | - | chr7_2:68365971-68365990 | Msa1071600:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | + | chr7_2:68365976-68365995 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | + | chr7_2:68365977-68365996 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | + | chr7_2:68365978-68365997 | None:intergenic | 55.0% | |
| GGTTGGACAGGCTAGCACTA+CGG | + | chr7_2:68366156-68366175 | None:intergenic | 55.0% | |
| ! | GCTAGCCTGTCCAACCCAAT+TGG | - | chr7_2:68366160-68366179 | Msa1071600:CDS | 55.0% |
| !! | GGGAACCAATTGGGTTGGAC+AGG | + | chr7_2:68366168-68366187 | None:intergenic | 55.0% |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | - | chr7_2:68366199-68366218 | Msa1071600:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | + | chr7_2:68366203-68366222 | None:intergenic | 55.0% | |
| ! | CGTGACGCAGGAGGTGTATT+TGG | + | chr7_2:68366259-68366278 | None:intergenic | 55.0% |
| GGCATCACAAATCGTGACGC+AGG | + | chr7_2:68366271-68366290 | None:intergenic | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | - | chr7_2:68365971-68365990 | Msa1071600:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | + | chr7_2:68365976-68365995 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | + | chr7_2:68365977-68365996 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | + | chr7_2:68365978-68365997 | None:intergenic | 55.0% | |
| GGTTGGACAGGCTAGCACTA+CGG | + | chr7_2:68366156-68366175 | None:intergenic | 55.0% | |
| ! | GCTAGCCTGTCCAACCCAAT+TGG | - | chr7_2:68366160-68366179 | Msa1071600:CDS | 55.0% |
| !! | GGGAACCAATTGGGTTGGAC+AGG | + | chr7_2:68366168-68366187 | None:intergenic | 55.0% |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | - | chr7_2:68366199-68366218 | Msa1071600:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | + | chr7_2:68366203-68366222 | None:intergenic | 55.0% | |
| ! | CGTGACGCAGGAGGTGTATT+TGG | + | chr7_2:68366259-68366278 | None:intergenic | 55.0% |
| GGCATCACAAATCGTGACGC+AGG | + | chr7_2:68366271-68366290 | None:intergenic | 55.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | + | chr7_2:68365794-68365813 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | + | chr7_2:68365797-68365816 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | - | chr7_2:68365794-68365813 | Msa1071600:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | + | chr7_2:68365801-68365820 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | - | chr7_2:68365824-68365843 | Msa1071600:CDS | 60.0% | |
| TTCACTTGCGGCACAGGTGG+AGG | + | chr7_2:68365920-68365939 | None:intergenic | 60.0% | |
| TCCACCTGTGCCGCAAGTGA+AGG | - | chr7_2:68365919-68365938 | Msa1071600:CDS | 60.0% | |
| TCCTTCACTTGCGGCACAGG+TGG | + | chr7_2:68365923-68365942 | None:intergenic | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | - | chr7_2:68365974-68365993 | Msa1071600:CDS | 60.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | + | chr7_2:68365794-68365813 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | + | chr7_2:68365797-68365816 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | - | chr7_2:68365794-68365813 | Msa1071600:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | + | chr7_2:68365801-68365820 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | - | chr7_2:68365824-68365843 | Msa1071600:CDS | 60.0% | |
| TTCACTTGCGGCACAGGTGG+AGG | + | chr7_2:68365920-68365939 | None:intergenic | 60.0% | |
| TCCACCTGTGCCGCAAGTGA+AGG | - | chr7_2:68365919-68365938 | Msa1071600:CDS | 60.0% | |
| TCCTTCACTTGCGGCACAGG+TGG | + | chr7_2:68365923-68365942 | None:intergenic | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | - | chr7_2:68365974-68365993 | Msa1071600:CDS | 60.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | + | chr7_2:68365831-68365850 | None:intergenic | 65.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | + | chr7_2:68365831-68365850 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 68365707 | 68366570 | 68365707 | ID=Msa1071600;Name=Msa1071600 |
| chr7_2 | mRNA | 68365707 | 68366570 | 68365707 | ID=Msa1071600-mRNA-1;Parent=Msa1071600;Name=Msa1071600-mRNA-1;_AED=0.82;_eAED=0.82;_QI=0|-1|0|1|-1|1|1|0|287 |
| chr7_2 | exon | 68365707 | 68366570 | 68365707 | ID=Msa1071600-mRNA-1:exon:14949;Parent=Msa1071600-mRNA-1 |
| chr7_2 | CDS | 68365707 | 68366570 | 68365707 | ID=Msa1071600-mRNA-1:cds;Parent=Msa1071600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
