Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073640 | XP_003625051.2 | 97.308 | 260 | 6 | 1 | 1 | 259 | 1 | 260 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073640 | sp|Q9M1K1|ORG2_ARATH | 41.245 | 257 | 130 | 9 | 1 | 243 | 1 | 250 | 3.97e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073640 | G7KRQ0 | 97.308 | 260 | 6 | 1 | 1 | 259 | 1 | 260 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1073640 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073640 | MtrunA17_Chr7g0256671 | 97.308 | 260 | 6 | 1 | 1 | 259 | 1 | 260 | 0.0 | 511 |
| Msa1073640 | MtrunA17_Chr1g0170581 | 58.537 | 246 | 92 | 7 | 1 | 241 | 1 | 241 | 5.72e-81 | 243 |
| Msa1073640 | MtrunA17_Chr1g0170591 | 55.918 | 245 | 94 | 6 | 1 | 242 | 1 | 234 | 1.10e-79 | 240 |
| Msa1073640 | MtrunA17_Chr1g0170571 | 57.787 | 244 | 89 | 6 | 1 | 241 | 1 | 233 | 2.33e-76 | 231 |
| Msa1073640 | MtrunA17_Chr6g0474681 | 34.868 | 152 | 90 | 4 | 66 | 215 | 6 | 150 | 1.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073640 | AT3G56970.1 | 41.245 | 257 | 130 | 9 | 1 | 243 | 1 | 250 | 4.04e-51 | 167 |
| Msa1073640 | AT3G56980.1 | 41.065 | 263 | 133 | 7 | 1 | 246 | 1 | 258 | 1.22e-46 | 156 |
| Msa1073640 | AT2G41240.1 | 40.650 | 246 | 130 | 6 | 1 | 240 | 1 | 236 | 2.14e-42 | 145 |
| Msa1073640 | AT2G41240.2 | 40.244 | 246 | 130 | 7 | 1 | 240 | 1 | 235 | 6.24e-40 | 139 |
| Msa1073640 | AT5G04150.2 | 43.452 | 168 | 86 | 3 | 56 | 219 | 76 | 238 | 9.50e-37 | 130 |
| Msa1073640 | AT5G04150.1 | 41.899 | 179 | 97 | 3 | 56 | 231 | 76 | 250 | 1.96e-36 | 130 |
Find 35 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTATGACTAATTA+AGG | 0.218000 | 7_2:-71227057 | None:intergenic |
| TCAGTTCTCATACTCAAATA+TGG | 0.224302 | 7_2:+71227004 | Msa1073640:CDS |
| AGCTTCTTAGCCATAAGTTT+AGG | 0.275147 | 7_2:-71227164 | None:intergenic |
| TCACTTCGTTCACTTCTTCC+TGG | 0.286326 | 7_2:+71227242 | Msa1073640:CDS |
| GCTTCTTAGCCATAAGTTTA+GGG | 0.291086 | 7_2:-71227163 | None:intergenic |
| AAATAATCATTTGGGCACTA+TGG | 0.310932 | 7_2:+71228711 | Msa1073640:CDS |
| AAGACACGTGAAATTGTTAC+TGG | 0.322176 | 7_2:-71228068 | None:intergenic |
| TCTTCTTCTTCTAAAACCTT+TGG | 0.334379 | 7_2:+71228359 | Msa1073640:CDS |
| ACAAAAGCAGAATTGTGATT+TGG | 0.342300 | 7_2:-71228212 | None:intergenic |
| GCCACAATCCCCTAAACTTA+TGG | 0.343588 | 7_2:+71227154 | Msa1073640:CDS |
| TCAATCTCAACATGTTCCTT+TGG | 0.352411 | 7_2:-71227128 | None:intergenic |
| TTGATGTGTTTAGAAAATAA+TGG | 0.374175 | 7_2:+71228320 | Msa1073640:CDS |
| AAATATGGGATGGCTCTTAG+AGG | 0.422867 | 7_2:+71227019 | Msa1073640:CDS |
| GGTGAAGAGAATTGATGATA+AGG | 0.444850 | 7_2:-71227107 | None:intergenic |
| CAGTTCTCATACTCAAATAT+GGG | 0.463285 | 7_2:+71227005 | Msa1073640:CDS |
| CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7_2:-71228294 | None:intergenic |
| TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7_2:+71228362 | Msa1073640:CDS |
| CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7_2:-71228305 | None:intergenic |
| GCCATAAGTTTAGGGGATTG+TGG | 0.507590 | 7_2:-71227155 | None:intergenic |
| TTATGACTAATTAAGGACTC+TGG | 0.527310 | 7_2:-71227050 | None:intergenic |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7_2:+71228366 | Msa1073640:CDS |
| ACGTGTCTTAAAATACATAC+CGG | 0.551566 | 7_2:+71228082 | Msa1073640:CDS |
| TCTTCCTGGTGAAGATCAAA+CGG | 0.553586 | 7_2:+71227256 | Msa1073640:CDS |
| CTTCTTAGCCATAAGTTTAG+GGG | 0.566289 | 7_2:-71227162 | None:intergenic |
| CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7_2:+71228363 | Msa1073640:CDS |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7_2:-71228375 | None:intergenic |
| TCATCAATTCTCTTCACCAA+AGG | 0.579398 | 7_2:+71227112 | Msa1073640:CDS |
| TTTGAGTATGAGAACTGAGG+TGG | 0.582813 | 7_2:-71226999 | None:intergenic |
| GATTTACAAAAGCAAGTGCA+AGG | 0.608962 | 7_2:+71228104 | Msa1073640:CDS |
| TCTCATACTCAAATATGGGA+TGG | 0.610260 | 7_2:+71227009 | Msa1073640:CDS |
| ATTACCGTTTGATCTTCACC+AGG | 0.645561 | 7_2:-71227260 | None:intergenic |
| TTGAGTATGAGAACTGAGGT+GGG | 0.646626 | 7_2:-71226998 | None:intergenic |
| GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7_2:-71227190 | None:intergenic |
| CAGTTAACAAAGAATCACAA+AGG | 0.715677 | 7_2:+71228180 | Msa1073640:CDS |
| ATATTTGAGTATGAGAACTG+AGG | 0.721433 | 7_2:-71227002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATACCAAATTAAATAAAAT+TGG | - | chr7_2:71227303-71227322 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | + | chr7_2:71227301-71227320 | Msa1073640:intron | 15.0% |
| !!! | TTTTTTTTCTTCAAATAGAT+TGG | - | chr7_2:71227645-71227664 | None:intergenic | 15.0% |
| !!! | ATAGCTAATTGTTATTTAAA+AGG | + | chr7_2:71227766-71227785 | Msa1073640:intron | 15.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | - | chr7_2:71227303-71227322 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | + | chr7_2:71227301-71227320 | Msa1073640:intron | 15.0% |
| !!! | TTTTTTTTCTTCAAATAGAT+TGG | - | chr7_2:71227645-71227664 | None:intergenic | 15.0% |
| !!! | ATAGCTAATTGTTATTTAAA+AGG | + | chr7_2:71227766-71227785 | Msa1073640:intron | 15.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | - | chr7_2:71227299-71227318 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | + | chr7_2:71227296-71227315 | Msa1073640:intron | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | + | chr7_2:71227378-71227397 | Msa1073640:intron | 20.0% |
| !!! | ATTGGTTAGTTTTTTTTTTG+TGG | - | chr7_2:71227627-71227646 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+AGG | + | chr7_2:71227811-71227830 | Msa1073640:intron | 20.0% |
| !!! | AACCTACTTTAAGAAAAAAA+GGG | + | chr7_2:71227812-71227831 | Msa1073640:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | + | chr7_2:71228320-71228339 | Msa1073640:CDS | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | + | chr7_2:71228703-71228722 | Msa1073640:CDS | 20.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | - | chr7_2:71227299-71227318 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | + | chr7_2:71227296-71227315 | Msa1073640:intron | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | + | chr7_2:71227378-71227397 | Msa1073640:intron | 20.0% |
| !!! | ATTGGTTAGTTTTTTTTTTG+TGG | - | chr7_2:71227627-71227646 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+AGG | + | chr7_2:71227811-71227830 | Msa1073640:intron | 20.0% |
| !!! | AACCTACTTTAAGAAAAAAA+GGG | + | chr7_2:71227812-71227831 | Msa1073640:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | + | chr7_2:71228320-71228339 | Msa1073640:CDS | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | + | chr7_2:71228703-71228722 | Msa1073640:CDS | 20.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | - | chr7_2:71227060-71227079 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | + | chr7_2:71227407-71227426 | Msa1073640:intron | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | + | chr7_2:71227718-71227737 | Msa1073640:intron | 25.0% |
| !!! | AATGTTTTGGAATTATGTCA+CGG | + | chr7_2:71227879-71227898 | Msa1073640:intron | 25.0% |
| ! | TGACGTATTCATAATATGAA+TGG | + | chr7_2:71227942-71227961 | Msa1073640:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | + | chr7_2:71228537-71228556 | Msa1073640:intron | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | - | chr7_2:71228541-71228560 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | + | chr7_2:71228538-71228557 | Msa1073640:intron | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | - | chr7_2:71228542-71228561 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | + | chr7_2:71228618-71228637 | Msa1073640:intron | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | + | chr7_2:71228702-71228721 | Msa1073640:CDS | 25.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | - | chr7_2:71227060-71227079 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | + | chr7_2:71227407-71227426 | Msa1073640:intron | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | + | chr7_2:71227718-71227737 | Msa1073640:intron | 25.0% |
| !!! | AATGTTTTGGAATTATGTCA+CGG | + | chr7_2:71227879-71227898 | Msa1073640:intron | 25.0% |
| ! | TGACGTATTCATAATATGAA+TGG | + | chr7_2:71227942-71227961 | Msa1073640:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | + | chr7_2:71228537-71228556 | Msa1073640:intron | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | - | chr7_2:71228541-71228560 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | + | chr7_2:71228538-71228557 | Msa1073640:intron | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | - | chr7_2:71228542-71228561 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | + | chr7_2:71228618-71228637 | Msa1073640:intron | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | + | chr7_2:71228702-71228721 | Msa1073640:CDS | 25.0% |
| ATATTTGAGTATGAGAACTG+AGG | - | chr7_2:71227005-71227024 | None:intergenic | 30.0% | |
| TCAGTTCTCATACTCAAATA+TGG | + | chr7_2:71227004-71227023 | Msa1073640:CDS | 30.0% | |
| CAGTTCTCATACTCAAATAT+GGG | + | chr7_2:71227005-71227024 | Msa1073640:CDS | 30.0% | |
| TTATGACTAATTAAGGACTC+TGG | - | chr7_2:71227053-71227072 | None:intergenic | 30.0% | |
| CTAGAGATAAGCATAATCAT+AGG | - | chr7_2:71227458-71227477 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | + | chr7_2:71227456-71227475 | Msa1073640:intron | 30.0% | |
| !! | AAGAGTTTTGATCTGACTAT+TGG | + | chr7_2:71227507-71227526 | Msa1073640:intron | 30.0% |
| CCAATGAATGATTAATCTAG+AGG | - | chr7_2:71227563-71227582 | None:intergenic | 30.0% | |
| CCTCTAGATTAATCATTCAT+TGG | + | chr7_2:71227560-71227579 | Msa1073640:intron | 30.0% | |
| !!! | CACCCTTTTTTTCTTAAAGT+AGG | - | chr7_2:71227817-71227836 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | + | chr7_2:71227866-71227885 | Msa1073640:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | - | chr7_2:71228039-71228058 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | + | chr7_2:71228082-71228101 | Msa1073640:CDS | 30.0% | |
| CAGTTAACAAAGAATCACAA+AGG | + | chr7_2:71228180-71228199 | Msa1073640:CDS | 30.0% | |
| ACAAAAGCAGAATTGTGATT+TGG | - | chr7_2:71228215-71228234 | None:intergenic | 30.0% | |
| ! | CTTTTGTAGTTTCAACAAGT+AGG | + | chr7_2:71228228-71228247 | Msa1073640:CDS | 30.0% |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | + | chr7_2:71228359-71228378 | Msa1073640:CDS | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | + | chr7_2:71228391-71228410 | Msa1073640:CDS | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | + | chr7_2:71228711-71228730 | Msa1073640:CDS | 30.0% | |
| ATATTTGAGTATGAGAACTG+AGG | - | chr7_2:71227005-71227024 | None:intergenic | 30.0% | |
| TCAGTTCTCATACTCAAATA+TGG | + | chr7_2:71227004-71227023 | Msa1073640:CDS | 30.0% | |
| CAGTTCTCATACTCAAATAT+GGG | + | chr7_2:71227005-71227024 | Msa1073640:CDS | 30.0% | |
| TTATGACTAATTAAGGACTC+TGG | - | chr7_2:71227053-71227072 | None:intergenic | 30.0% | |
| CTAGAGATAAGCATAATCAT+AGG | - | chr7_2:71227458-71227477 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | + | chr7_2:71227456-71227475 | Msa1073640:intron | 30.0% | |
| !! | AAGAGTTTTGATCTGACTAT+TGG | + | chr7_2:71227507-71227526 | Msa1073640:intron | 30.0% |
| CCAATGAATGATTAATCTAG+AGG | - | chr7_2:71227563-71227582 | None:intergenic | 30.0% | |
| CCTCTAGATTAATCATTCAT+TGG | + | chr7_2:71227560-71227579 | Msa1073640:intron | 30.0% | |
| !!! | CACCCTTTTTTTCTTAAAGT+AGG | - | chr7_2:71227817-71227836 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | + | chr7_2:71227866-71227885 | Msa1073640:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | - | chr7_2:71228039-71228058 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | + | chr7_2:71228082-71228101 | Msa1073640:CDS | 30.0% | |
| CAGTTAACAAAGAATCACAA+AGG | + | chr7_2:71228180-71228199 | Msa1073640:CDS | 30.0% | |
| ACAAAAGCAGAATTGTGATT+TGG | - | chr7_2:71228215-71228234 | None:intergenic | 30.0% | |
| ! | CTTTTGTAGTTTCAACAAGT+AGG | + | chr7_2:71228228-71228247 | Msa1073640:CDS | 30.0% |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | + | chr7_2:71228359-71228378 | Msa1073640:CDS | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | + | chr7_2:71228391-71228410 | Msa1073640:CDS | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | + | chr7_2:71228711-71228730 | Msa1073640:CDS | 30.0% | |
| TCTCATACTCAAATATGGGA+TGG | + | chr7_2:71227009-71227028 | Msa1073640:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | - | chr7_2:71227110-71227129 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | + | chr7_2:71227112-71227131 | Msa1073640:CDS | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | - | chr7_2:71227131-71227150 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | - | chr7_2:71227165-71227184 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | - | chr7_2:71227166-71227185 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | - | chr7_2:71227167-71227186 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | + | chr7_2:71227411-71227430 | Msa1073640:intron | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | + | chr7_2:71227475-71227494 | Msa1073640:intron | 35.0% |
| ATTGGATCAGAGACTATTCT+TGG | + | chr7_2:71227578-71227597 | Msa1073640:intron | 35.0% | |
| AAGACACGTGAAATTGTTAC+TGG | - | chr7_2:71228071-71228090 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | - | chr7_2:71228104-71228123 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | + | chr7_2:71228104-71228123 | Msa1073640:CDS | 35.0% | |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | + | chr7_2:71228362-71228381 | Msa1073640:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | + | chr7_2:71228363-71228382 | Msa1073640:CDS | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | + | chr7_2:71228621-71228640 | Msa1073640:intron | 35.0% |
| TCTCATACTCAAATATGGGA+TGG | + | chr7_2:71227009-71227028 | Msa1073640:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | - | chr7_2:71227110-71227129 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | + | chr7_2:71227112-71227131 | Msa1073640:CDS | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | - | chr7_2:71227131-71227150 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | - | chr7_2:71227165-71227184 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | - | chr7_2:71227166-71227185 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | - | chr7_2:71227167-71227186 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | + | chr7_2:71227411-71227430 | Msa1073640:intron | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | + | chr7_2:71227475-71227494 | Msa1073640:intron | 35.0% |
| ATTGGATCAGAGACTATTCT+TGG | + | chr7_2:71227578-71227597 | Msa1073640:intron | 35.0% | |
| AAGACACGTGAAATTGTTAC+TGG | - | chr7_2:71228071-71228090 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | - | chr7_2:71228104-71228123 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | + | chr7_2:71228104-71228123 | Msa1073640:CDS | 35.0% | |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | + | chr7_2:71228362-71228381 | Msa1073640:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | + | chr7_2:71228363-71228382 | Msa1073640:CDS | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | + | chr7_2:71228621-71228640 | Msa1073640:intron | 35.0% |
| TTGAGTATGAGAACTGAGGT+GGG | - | chr7_2:71227001-71227020 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTGAGG+TGG | - | chr7_2:71227002-71227021 | None:intergenic | 40.0% | |
| AAATATGGGATGGCTCTTAG+AGG | + | chr7_2:71227019-71227038 | Msa1073640:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | + | chr7_2:71227256-71227275 | Msa1073640:CDS | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | - | chr7_2:71227263-71227282 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | - | chr7_2:71227427-71227446 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | - | chr7_2:71228297-71228316 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | - | chr7_2:71228308-71228327 | None:intergenic | 40.0% | |
| TTGAGTATGAGAACTGAGGT+GGG | - | chr7_2:71227001-71227020 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTGAGG+TGG | - | chr7_2:71227002-71227021 | None:intergenic | 40.0% | |
| AAATATGGGATGGCTCTTAG+AGG | + | chr7_2:71227019-71227038 | Msa1073640:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | + | chr7_2:71227256-71227275 | Msa1073640:CDS | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | - | chr7_2:71227263-71227282 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | - | chr7_2:71227427-71227446 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | - | chr7_2:71228297-71228316 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | - | chr7_2:71228308-71228327 | None:intergenic | 40.0% | |
| GCCACAATCCCCTAAACTTA+TGG | + | chr7_2:71227154-71227173 | Msa1073640:CDS | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | - | chr7_2:71227158-71227177 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | - | chr7_2:71227193-71227212 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | + | chr7_2:71227242-71227261 | Msa1073640:CDS | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | + | chr7_2:71228366-71228385 | Msa1073640:CDS | 45.0% |
| GCCACAATCCCCTAAACTTA+TGG | + | chr7_2:71227154-71227173 | Msa1073640:CDS | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | - | chr7_2:71227158-71227177 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | - | chr7_2:71227193-71227212 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | + | chr7_2:71227242-71227261 | Msa1073640:CDS | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | + | chr7_2:71228366-71228385 | Msa1073640:CDS | 45.0% |
| ATAGAAGAGCCTCCCTCCAA+AGG | - | chr7_2:71228378-71228397 | None:intergenic | 50.0% | |
| ATAGAAGAGCCTCCCTCCAA+AGG | - | chr7_2:71228378-71228397 | None:intergenic | 50.0% | |
| CTATTGGACCCTCACTCGAG+TGG | + | chr7_2:71227523-71227542 | Msa1073640:intron | 55.0% | |
| CTATTGGACCCTCACTCGAG+TGG | + | chr7_2:71227523-71227542 | Msa1073640:intron | 55.0% | |
| TGGACCCTCACTCGAGTGGA+TGG | + | chr7_2:71227527-71227546 | Msa1073640:intron | 60.0% | |
| ACCCTCACTCGAGTGGATGG+TGG | + | chr7_2:71227530-71227549 | Msa1073640:intron | 60.0% | |
| CCCACCATCCACTCGAGTGA+GGG | - | chr7_2:71227534-71227553 | None:intergenic | 60.0% | |
| CCCTCACTCGAGTGGATGGT+GGG | + | chr7_2:71227531-71227550 | Msa1073640:intron | 60.0% | |
| CCTCACTCGAGTGGATGGTG+GGG | + | chr7_2:71227532-71227551 | Msa1073640:intron | 60.0% | |
| !! | ACTCGAGTGGATGGTGGGGT+TGG | + | chr7_2:71227536-71227555 | Msa1073640:intron | 60.0% |
| TGGACCCTCACTCGAGTGGA+TGG | + | chr7_2:71227527-71227546 | Msa1073640:intron | 60.0% | |
| ACCCTCACTCGAGTGGATGG+TGG | + | chr7_2:71227530-71227549 | Msa1073640:intron | 60.0% | |
| CCCACCATCCACTCGAGTGA+GGG | - | chr7_2:71227534-71227553 | None:intergenic | 60.0% | |
| CCCTCACTCGAGTGGATGGT+GGG | + | chr7_2:71227531-71227550 | Msa1073640:intron | 60.0% | |
| CCTCACTCGAGTGGATGGTG+GGG | + | chr7_2:71227532-71227551 | Msa1073640:intron | 60.0% | |
| !! | ACTCGAGTGGATGGTGGGGT+TGG | + | chr7_2:71227536-71227555 | Msa1073640:intron | 60.0% |
| CCCCACCATCCACTCGAGTG+AGG | - | chr7_2:71227535-71227554 | None:intergenic | 65.0% | |
| CCCCACCATCCACTCGAGTG+AGG | - | chr7_2:71227535-71227554 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 71226984 | 71228765 | 71226984 | ID=Msa1073640;Name=Msa1073640 |
| chr7_2 | mRNA | 71226984 | 71228765 | 71226984 | ID=Msa1073640-mRNA-1;Parent=Msa1073640;Name=Msa1073640-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|259 |
| chr7_2 | exon | 71226984 | 71227277 | 71226984 | ID=Msa1073640-mRNA-1:exon:16125;Parent=Msa1073640-mRNA-1 |
| chr7_2 | exon | 71228053 | 71228412 | 71228053 | ID=Msa1073640-mRNA-1:exon:16126;Parent=Msa1073640-mRNA-1 |
| chr7_2 | exon | 71228640 | 71228765 | 71228640 | ID=Msa1073640-mRNA-1:exon:16127;Parent=Msa1073640-mRNA-1 |
| chr7_2 | CDS | 71226984 | 71227277 | 71226984 | ID=Msa1073640-mRNA-1:cds;Parent=Msa1073640-mRNA-1 |
| chr7_2 | CDS | 71228053 | 71228412 | 71228053 | ID=Msa1073640-mRNA-1:cds;Parent=Msa1073640-mRNA-1 |
| chr7_2 | CDS | 71228640 | 71228765 | 71228640 | ID=Msa1073640-mRNA-1:cds;Parent=Msa1073640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
