Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074740 | AES79839.1 | 95.568 | 361 | 15 | 1 | 1 | 360 | 1 | 361 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074740 | sp|Q5CCK4|VAL2_ARATH | 42.602 | 392 | 176 | 8 | 11 | 358 | 174 | 560 | 1.92e-88 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074740 | G7KY51 | 95.568 | 361 | 15 | 1 | 1 | 360 | 1 | 361 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1074740 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074740 | MtrunA17_Chr2g0281191 | 45.574 | 305 | 130 | 5 | 89 | 357 | 320 | 624 | 3.57e-77 | 254 |
| Msa1074740 | MtrunA17_Chr7g0244881 | 93.805 | 113 | 7 | 0 | 1 | 113 | 1 | 113 | 8.27e-73 | 221 |
| Msa1074740 | MtrunA17_Chr4g0012861 | 55.752 | 226 | 97 | 2 | 3 | 228 | 199 | 421 | 7.74e-71 | 237 |
| Msa1074740 | MtrunA17_Chr4g0012861 | 53.521 | 142 | 52 | 3 | 230 | 358 | 484 | 624 | 9.67e-42 | 155 |
| Msa1074740 | MtrunA17_Chr7g0244871 | 94.681 | 94 | 5 | 0 | 113 | 206 | 4 | 97 | 1.27e-60 | 190 |
| Msa1074740 | MtrunA17_Chr3g0107701 | 46.774 | 248 | 119 | 8 | 2 | 241 | 218 | 460 | 4.06e-60 | 207 |
| Msa1074740 | MtrunA17_Chr3g0107701 | 51.969 | 127 | 48 | 2 | 245 | 358 | 522 | 648 | 1.34e-32 | 129 |
| Msa1074740 | MtrunA17_Chr5g0432721 | 50.270 | 185 | 87 | 3 | 52 | 235 | 254 | 434 | 3.41e-53 | 187 |
| Msa1074740 | MtrunA17_Chr5g0432721 | 55.556 | 72 | 31 | 1 | 247 | 317 | 507 | 578 | 1.22e-17 | 84.3 |
| Msa1074740 | MtrunA17_Chr7g0251891 | 38.835 | 103 | 62 | 1 | 121 | 222 | 16 | 118 | 7.51e-18 | 81.3 |
| Msa1074740 | MtrunA17_Chr7g0237841 | 39.216 | 102 | 60 | 2 | 121 | 220 | 623 | 724 | 1.92e-16 | 80.9 |
| Msa1074740 | MtrunA17_Chr1g0178071 | 38.571 | 140 | 64 | 7 | 98 | 223 | 50 | 181 | 2.76e-16 | 79.0 |
| Msa1074740 | MtrunA17_Chr8g0345771 | 40.000 | 110 | 56 | 5 | 121 | 223 | 171 | 277 | 2.31e-14 | 74.3 |
| Msa1074740 | MtrunA17_Chr7g0266821 | 43.000 | 100 | 50 | 5 | 126 | 221 | 65 | 161 | 9.62e-14 | 71.2 |
| Msa1074740 | MtrunA17_Chr7g0276471 | 40.659 | 91 | 49 | 3 | 121 | 208 | 117 | 205 | 1.95e-13 | 71.2 |
| Msa1074740 | MtrunA17_Chr1g0198661 | 34.641 | 153 | 69 | 7 | 108 | 231 | 168 | 318 | 2.84e-13 | 70.5 |
| Msa1074740 | MtrunA17_Chr5g0422501 | 38.393 | 112 | 55 | 5 | 121 | 220 | 235 | 344 | 1.36e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074740 | AT4G32010.2 | 43.041 | 388 | 176 | 7 | 11 | 358 | 174 | 556 | 2.34e-91 | 290 |
| Msa1074740 | AT4G32010.1 | 42.602 | 392 | 176 | 8 | 11 | 358 | 174 | 560 | 1.96e-89 | 285 |
| Msa1074740 | AT2G30470.1 | 44.582 | 323 | 125 | 5 | 89 | 358 | 262 | 583 | 5.71e-80 | 260 |
| Msa1074740 | AT4G21550.3 | 39.568 | 278 | 147 | 7 | 54 | 315 | 254 | 526 | 4.94e-50 | 176 |
| Msa1074740 | AT4G21550.1 | 40.714 | 280 | 145 | 7 | 54 | 317 | 254 | 528 | 1.27e-44 | 163 |
| Msa1074740 | AT4G21550.2 | 38.636 | 264 | 141 | 7 | 54 | 301 | 254 | 512 | 5.50e-44 | 159 |
| Msa1074740 | AT3G26790.1 | 40.385 | 104 | 61 | 1 | 121 | 223 | 91 | 194 | 4.64e-18 | 84.3 |
| Msa1074740 | AT1G28300.1 | 39.669 | 121 | 69 | 3 | 88 | 205 | 136 | 255 | 2.16e-17 | 82.8 |
| Msa1074740 | AT3G24650.1 | 38.211 | 123 | 74 | 2 | 121 | 241 | 571 | 693 | 2.66e-17 | 84.0 |
| Msa1074740 | AT5G06250.4 | 39.695 | 131 | 60 | 5 | 121 | 234 | 45 | 173 | 2.36e-16 | 79.0 |
| Msa1074740 | AT5G06250.2 | 39.695 | 131 | 60 | 5 | 121 | 234 | 45 | 173 | 2.61e-16 | 78.6 |
| Msa1074740 | AT5G06250.5 | 39.695 | 131 | 60 | 5 | 121 | 234 | 45 | 173 | 2.74e-16 | 78.6 |
| Msa1074740 | AT5G06250.3 | 39.695 | 131 | 60 | 5 | 121 | 234 | 45 | 173 | 2.99e-16 | 78.2 |
| Msa1074740 | AT5G06250.1 | 39.695 | 131 | 60 | 5 | 121 | 234 | 45 | 173 | 4.16e-16 | 77.8 |
| Msa1074740 | AT1G13260.1 | 38.983 | 118 | 65 | 5 | 120 | 232 | 186 | 301 | 1.42e-15 | 77.4 |
| Msa1074740 | AT2G36080.4 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.23e-15 | 73.2 |
| Msa1074740 | AT2G36080.2 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.23e-15 | 73.2 |
| Msa1074740 | AT2G36080.3 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.36e-15 | 74.7 |
| Msa1074740 | AT2G36080.1 | 41.667 | 108 | 54 | 4 | 121 | 221 | 37 | 142 | 3.37e-15 | 74.7 |
| Msa1074740 | AT3G25730.1 | 37.815 | 119 | 65 | 5 | 121 | 232 | 182 | 298 | 3.73e-15 | 75.9 |
| Msa1074740 | AT1G68840.2 | 44.086 | 93 | 45 | 4 | 121 | 208 | 187 | 277 | 2.54e-14 | 73.6 |
| Msa1074740 | AT1G68840.1 | 44.086 | 93 | 45 | 4 | 121 | 208 | 187 | 277 | 2.54e-14 | 73.6 |
| Msa1074740 | AT3G11580.4 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 4.14e-14 | 71.6 |
| Msa1074740 | AT3G11580.2 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 4.14e-14 | 71.6 |
| Msa1074740 | AT3G11580.5 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 4.14e-14 | 71.6 |
| Msa1074740 | AT3G11580.1 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 8.99e-14 | 71.2 |
| Msa1074740 | AT2G46870.1 | 38.889 | 108 | 57 | 5 | 121 | 221 | 34 | 139 | 1.10e-13 | 71.2 |
| Msa1074740 | AT1G01030.2 | 35.115 | 131 | 70 | 6 | 121 | 238 | 55 | 183 | 9.98e-13 | 68.9 |
| Msa1074740 | AT3G11580.3 | 39.316 | 117 | 52 | 5 | 121 | 221 | 28 | 141 | 1.10e-12 | 68.9 |
| Msa1074740 | AT1G01030.1 | 37.288 | 118 | 64 | 5 | 121 | 230 | 55 | 170 | 1.76e-12 | 68.2 |
| Msa1074740 | AT3G61970.1 | 37.037 | 108 | 59 | 4 | 121 | 221 | 22 | 127 | 1.83e-12 | 67.8 |
| Msa1074740 | AT1G25560.1 | 38.393 | 112 | 55 | 5 | 121 | 220 | 194 | 303 | 2.24e-12 | 67.8 |
| Msa1074740 | AT4G01500.1 | 35.714 | 126 | 65 | 5 | 93 | 208 | 2 | 121 | 2.57e-12 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATCTGTGGAGAATTTA+TGG | 0.154338 | 7_2:+72684415 | Msa1074740:CDS |
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | 7_2:+72682895 | Msa1074740:CDS |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | 7_2:-72682835 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | 7_2:+72682812 | Msa1074740:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | 7_2:-72682624 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | 7_2:-72682192 | None:intergenic |
| AAGAAGGGTATATTCATAAA+TGG | 0.214466 | 7_2:+72683983 | Msa1074740:CDS |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | 7_2:+72681985 | Msa1074740:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | 7_2:-72682063 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | 7_2:-72682234 | None:intergenic |
| CATTGATGCTGAAACTTACT+TGG | 0.284975 | 7_2:+72683524 | Msa1074740:CDS |
| GACATACTTTCCACCTATTT+CGG | 0.293074 | 7_2:+72682741 | Msa1074740:intron |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | 7_2:-72681989 | None:intergenic |
| CAAGAATTACAACAATTATC+TGG | 0.358413 | 7_2:+72682249 | Msa1074740:CDS |
| ATATCACTGTCTTCAATTCA+TGG | 0.371160 | 7_2:-72684557 | None:intergenic |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | 7_2:-72682165 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | 7_2:+72682003 | Msa1074740:CDS |
| ATACCCTTCTTTGCAATGAT+AGG | 0.386942 | 7_2:-72683971 | None:intergenic |
| AATTTGCAGTAACATTTAAC+CGG | 0.402045 | 7_2:+72683063 | Msa1074740:intron |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | 7_2:-72682115 | None:intergenic |
| TTCAAACATTGTGGTGATTG+AGG | 0.415224 | 7_2:+72683588 | Msa1074740:CDS |
| GGGATCTGTGGAGAATTTAT+GGG | 0.418012 | 7_2:+72684416 | Msa1074740:CDS |
| TGCTCAGAATGGAGAAAGTT+GGG | 0.421979 | 7_2:+72684396 | Msa1074740:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | 7_2:-72682084 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | 7_2:+72682792 | Msa1074740:CDS |
| GGCATCGGTTTCTTCTATAC+AGG | 0.438868 | 7_2:+72683124 | Msa1074740:CDS |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | 7_2:+72682006 | Msa1074740:CDS |
| AGAAGGGTATATTCATAAAT+GGG | 0.456876 | 7_2:+72683984 | Msa1074740:CDS |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.457967 | 7_2:+72684395 | Msa1074740:CDS |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | 7_2:+72682782 | Msa1074740:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | 7_2:-72682564 | None:intergenic |
| GTTTCAGCATCAATGCTTGT+TGG | 0.461465 | 7_2:-72683516 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.470824 | 7_2:+72683391 | Msa1074740:CDS |
| ACAATGTTTGAATTAACTGT+TGG | 0.478449 | 7_2:-72683577 | None:intergenic |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | 7_2:-72682000 | None:intergenic |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | 7_2:+72682588 | Msa1074740:CDS |
| ACCTCCTATCATTGCAAAGA+AGG | 0.496773 | 7_2:+72683967 | Msa1074740:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.497014 | 7_2:-72683968 | None:intergenic |
| TGCAGTAACATTTAACCGGA+TGG | 0.497340 | 7_2:+72683067 | Msa1074740:intron |
| AACTGATAATAGGGTTTCGA+AGG | 0.500618 | 7_2:+72683102 | Msa1074740:CDS |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | 7_2:+72682596 | Msa1074740:CDS |
| CCTATTATCAGTTTCTCCCC+CGG | 0.509156 | 7_2:-72683092 | None:intergenic |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | 7_2:+72683073 | Msa1074740:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | 7_2:+72682830 | Msa1074740:CDS |
| TATCACTGTCTTCAATTCAT+GGG | 0.523152 | 7_2:-72684556 | None:intergenic |
| ATGGAGAAAGTTGGGATCTG+TGG | 0.531161 | 7_2:+72684404 | Msa1074740:CDS |
| TTAGGAATTACTAGCTCTTG+TGG | 0.532779 | 7_2:-72683439 | None:intergenic |
| TTTCCACCTATTTCGGAACC+AGG | 0.534109 | 7_2:+72682748 | Msa1074740:CDS |
| ATGTTTGAATTAACTGTTGG+AGG | 0.534643 | 7_2:-72683574 | None:intergenic |
| AATAGGGTTTCGAAGGGCAT+CGG | 0.534779 | 7_2:+72683109 | Msa1074740:CDS |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | 7_2:+72682886 | Msa1074740:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.538634 | 7_2:-72682244 | None:intergenic |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | 7_2:+72682579 | Msa1074740:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | 7_2:+72684427 | Msa1074740:CDS |
| TTTGAATTAACTGTTGGAGG+TGG | 0.549434 | 7_2:-72683571 | None:intergenic |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | 7_2:+72683074 | Msa1074740:CDS |
| TTCCACCTATTTCGGAACCA+GGG | 0.553619 | 7_2:+72682749 | Msa1074740:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | 7_2:+72682781 | Msa1074740:CDS |
| AACAGTTAATTCAAACATTG+TGG | 0.562770 | 7_2:+72683579 | Msa1074740:CDS |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | 7_2:+72682056 | Msa1074740:CDS |
| CCTCCTATCATTGCAAAGAA+GGG | 0.572822 | 7_2:+72683968 | Msa1074740:CDS |
| ATTGATGCTGAAACTTACTT+GGG | 0.573068 | 7_2:+72683525 | Msa1074740:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | 7_2:+72682057 | Msa1074740:CDS |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | 7_2:+72682009 | Msa1074740:CDS |
| ATATATATGAATCATTAGCT+AGG | 0.582039 | 7_2:+72681950 | Msa1074740:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | 7_2:+72682163 | Msa1074740:CDS |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | 7_2:-72682553 | None:intergenic |
| TCCACCTATTTCGGAACCAG+GGG | 0.605085 | 7_2:+72682750 | Msa1074740:CDS |
| ACAACAGGATGAACGAGCAA+TGG | 0.610776 | 7_2:+72684358 | Msa1074740:intron |
| AGTGTGATAAGTGCTCAGAA+TGG | 0.614321 | 7_2:+72684385 | Msa1074740:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | 7_2:+72683075 | Msa1074740:CDS |
| GGATCTGTGGAGAATTTATG+GGG | 0.621372 | 7_2:+72684417 | Msa1074740:CDS |
| ACTGATAATAGGGTTTCGAA+GGG | 0.642961 | 7_2:+72683103 | Msa1074740:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | 7_2:-72682114 | None:intergenic |
| CCACCTATTTCGGAACCAGG+GGG | 0.664507 | 7_2:+72682751 | Msa1074740:CDS |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | 7_2:+72682187 | Msa1074740:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | 7_2:-72682556 | None:intergenic |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | 7_2:+72683076 | Msa1074740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTAAATTTTTCATTAT+AGG | + | chr7_2:72682286-72682305 | Msa1074740:intron | 10.0% |
| !! | ATTCAATATAAAATAAAATG+AGG | - | chr7_2:72682450-72682469 | None:intergenic | 10.0% |
| !! | ATTTACATAAATACAAAAAT+AGG | - | chr7_2:72683354-72683373 | None:intergenic | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | + | chr7_2:72683669-72683688 | Msa1074740:intron | 10.0% |
| !!! | ATTTTTTAAAGATGTTTTAT+CGG | + | chr7_2:72683906-72683925 | Msa1074740:intron | 10.0% |
| !!! | AAACGATAAATTTTTTTATA+GGG | - | chr7_2:72684101-72684120 | None:intergenic | 10.0% |
| !!! | AAAACGATAAATTTTTTTAT+AGG | - | chr7_2:72684102-72684121 | None:intergenic | 10.0% |
| !! | TGAAAAATTTAGTAAAGTAA+TGG | - | chr7_2:72682282-72682301 | None:intergenic | 15.0% |
| !! | AAAGATTTATCATCAAATAT+TGG | - | chr7_2:72682683-72682702 | None:intergenic | 15.0% |
| !!! | GTCATAAAGAAAATATATTT+TGG | - | chr7_2:72684307-72684326 | None:intergenic | 15.0% |
| !! | ATATATATGAATCATTAGCT+AGG | + | chr7_2:72681950-72681969 | Msa1074740:CDS | 20.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | - | chr7_2:72682247-72682266 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | - | chr7_2:72682376-72682395 | None:intergenic | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | + | chr7_2:72682812-72682831 | Msa1074740:CDS | 20.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | - | chr7_2:72682971-72682990 | None:intergenic | 20.0% |
| !!! | CTGCAAATTTTTTTTGTAAA+AGG | - | chr7_2:72683052-72683071 | None:intergenic | 20.0% |
| !! | TTCATCAAAATAAACTTTAG+AGG | + | chr7_2:72683719-72683738 | Msa1074740:intron | 20.0% |
| !!! | TAAACTTTAGAGGAATAATA+TGG | + | chr7_2:72683729-72683748 | Msa1074740:intron | 20.0% |
| !!! | CAAAAGTTCATAATTTTGTA+AGG | - | chr7_2:72684070-72684089 | None:intergenic | 20.0% |
| !!! | TTGTTATTTTAAATATGTCG+AGG | - | chr7_2:72684130-72684149 | None:intergenic | 20.0% |
| !!! | TCGACATATTTAAAATAACA+AGG | + | chr7_2:72684129-72684148 | Msa1074740:intron | 20.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | - | chr7_2:72681992-72682011 | None:intergenic | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | - | chr7_2:72682003-72682022 | None:intergenic | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | + | chr7_2:72682003-72682022 | Msa1074740:CDS | 25.0% |
| ! | CAAGAATTACAACAATTATC+TGG | + | chr7_2:72682249-72682268 | Msa1074740:CDS | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | - | chr7_2:72682531-72682550 | None:intergenic | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | + | chr7_2:72682706-72682725 | Msa1074740:intron | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | + | chr7_2:72682992-72683011 | Msa1074740:intron | 25.0% |
| ! | AATTTGCAGTAACATTTAAC+CGG | + | chr7_2:72683063-72683082 | Msa1074740:intron | 25.0% |
| ! | TATGTAAGATTGCAAAAATG+TGG | + | chr7_2:72683180-72683199 | Msa1074740:intron | 25.0% |
| !!! | CATATGTCTAATTTGTTCTA+TGG | + | chr7_2:72683308-72683327 | Msa1074740:intron | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | + | chr7_2:72683391-72683410 | Msa1074740:CDS | 25.0% |
| ! | ACAATGTTTGAATTAACTGT+TGG | - | chr7_2:72683580-72683599 | None:intergenic | 25.0% |
| ! | AACAGTTAATTCAAACATTG+TGG | + | chr7_2:72683579-72683598 | Msa1074740:CDS | 25.0% |
| ! | TAGTCCTCAAAGATATAATA+TGG | - | chr7_2:72683698-72683717 | None:intergenic | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | + | chr7_2:72683748-72683767 | Msa1074740:intron | 25.0% |
| !! | TAAAATTGAAGCACTCAATA+TGG | - | chr7_2:72683879-72683898 | None:intergenic | 25.0% |
| !! | AAGAAGGGTATATTCATAAA+TGG | + | chr7_2:72683983-72684002 | Msa1074740:CDS | 25.0% |
| !! | AGAAGGGTATATTCATAAAT+GGG | + | chr7_2:72683984-72684003 | Msa1074740:CDS | 25.0% |
| !! | AAACACCTTTTATAAGATCA+GGG | - | chr7_2:72684183-72684202 | None:intergenic | 25.0% |
| !! | AAAACACCTTTTATAAGATC+AGG | - | chr7_2:72684184-72684203 | None:intergenic | 25.0% |
| !!! | GTTAACAAATCTTGTTTTCA+AGG | + | chr7_2:72684489-72684508 | Msa1074740:intron | 25.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | + | chr7_2:72681985-72682004 | Msa1074740:CDS | 30.0% |
| AATTCTTGATCGGTAATCTT+AGG | - | chr7_2:72682237-72682256 | None:intergenic | 30.0% | |
| ! | TAGGTCAAATGTTTTATGCT+AGG | + | chr7_2:72682305-72682324 | Msa1074740:intron | 30.0% |
| GTTTGTATGATTAGTACTCT+TGG | + | chr7_2:72682482-72682501 | Msa1074740:intron | 30.0% | |
| ! | CTTTAACACATCATTGGTTA+TGG | - | chr7_2:72682525-72682544 | None:intergenic | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | - | chr7_2:72682627-72682646 | None:intergenic | 30.0% |
| ATTTGTAAATAAATACCCCC+TGG | - | chr7_2:72682769-72682788 | None:intergenic | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | - | chr7_2:72682838-72682857 | None:intergenic | 30.0% | |
| !! | AGCAGGATATATGTTTTAGA+AGG | + | chr7_2:72682847-72682866 | Msa1074740:CDS | 30.0% |
| ! | AATTGCTATTGAACTATGAG+TGG | - | chr7_2:72682934-72682953 | None:intergenic | 30.0% |
| ! | ATTCTGCTATGTGTTATTAG+AGG | + | chr7_2:72683235-72683254 | Msa1074740:intron | 30.0% |
| ! | TCACAAGTTCTTTTCTTCTT+AGG | - | chr7_2:72683460-72683479 | None:intergenic | 30.0% |
| ATTGATGCTGAAACTTACTT+GGG | + | chr7_2:72683525-72683544 | Msa1074740:CDS | 30.0% | |
| ATGTTTGAATTAACTGTTGG+AGG | - | chr7_2:72683577-72683596 | None:intergenic | 30.0% | |
| GTGACCATATTATATCTTTG+AGG | + | chr7_2:72683691-72683710 | Msa1074740:intron | 30.0% | |
| ! | TTTTGAGCAAACATTCAATG+TGG | - | chr7_2:72683835-72683854 | None:intergenic | 30.0% |
| GAATGTTTGCTCAAAATCTA+TGG | + | chr7_2:72683839-72683858 | Msa1074740:intron | 30.0% | |
| GACTATACTAAAATTGTTGC+AGG | + | chr7_2:72683943-72683962 | Msa1074740:intron | 30.0% | |
| !! | ATTAGTAGTTTAGCTTGACA+TGG | - | chr7_2:72684277-72684296 | None:intergenic | 30.0% |
| GGAAATTCAAATTCCTTTGG+TGG | + | chr7_2:72682006-72682025 | Msa1074740:CDS | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | + | chr7_2:72682009-72682028 | Msa1074740:CDS | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | + | chr7_2:72682056-72682075 | Msa1074740:CDS | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | + | chr7_2:72682057-72682076 | Msa1074740:CDS | 35.0% | |
| !! | TGCAAAAGATTCTGAGACTT+AGG | - | chr7_2:72682087-72682106 | None:intergenic | 35.0% |
| ! | TCAATAGCAAGAGTTGACTT+GGG | - | chr7_2:72682117-72682136 | None:intergenic | 35.0% |
| GTTAATGTCTTCTCGAATAG+TGG | - | chr7_2:72682567-72682586 | None:intergenic | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | + | chr7_2:72682579-72682598 | Msa1074740:CDS | 35.0% | |
| GACATACTTTCCACCTATTT+CGG | + | chr7_2:72682741-72682760 | Msa1074740:intron | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | + | chr7_2:72682781-72682800 | Msa1074740:CDS | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | + | chr7_2:72682782-72682801 | Msa1074740:CDS | 35.0% | |
| !! | TTTTAGAAGGAGTACATGCT+TGG | + | chr7_2:72682860-72682879 | Msa1074740:CDS | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | + | chr7_2:72682895-72682914 | Msa1074740:CDS | 35.0% |
| AACTGATAATAGGGTTTCGA+AGG | + | chr7_2:72683102-72683121 | Msa1074740:CDS | 35.0% | |
| ACTGATAATAGGGTTTCGAA+GGG | + | chr7_2:72683103-72683122 | Msa1074740:CDS | 35.0% | |
| ATGTAAATTTCTTTCCCAGC+AGG | + | chr7_2:72683366-72683385 | Msa1074740:intron | 35.0% | |
| ! | TTAGGAATTACTAGCTCTTG+TGG | - | chr7_2:72683442-72683461 | None:intergenic | 35.0% |
| CATTGATGCTGAAACTTACT+TGG | + | chr7_2:72683524-72683543 | Msa1074740:CDS | 35.0% | |
| TTTGAATTAACTGTTGGAGG+TGG | - | chr7_2:72683574-72683593 | None:intergenic | 35.0% | |
| TTCAAACATTGTGGTGATTG+AGG | + | chr7_2:72683588-72683607 | Msa1074740:CDS | 35.0% | |
| TGTGACAATGCTCTAATCAT+TGG | + | chr7_2:72683805-72683824 | Msa1074740:intron | 35.0% | |
| TGTTTGCTCAAAATCTATGG+AGG | + | chr7_2:72683842-72683861 | Msa1074740:intron | 35.0% | |
| ATACCCTTCTTTGCAATGAT+AGG | - | chr7_2:72683974-72683993 | None:intergenic | 35.0% | |
| TTGCATTGTGATTGAACAAC+AGG | + | chr7_2:72684343-72684362 | Msa1074740:intron | 35.0% | |
| AGAATTTATGGGGTCAAAGA+AGG | + | chr7_2:72684427-72684446 | Msa1074740:CDS | 35.0% | |
| CTCAATAGCAAGAGTTGACT+TGG | - | chr7_2:72682118-72682137 | None:intergenic | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | + | chr7_2:72682137-72682156 | Msa1074740:CDS | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | - | chr7_2:72682168-72682187 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | - | chr7_2:72682195-72682214 | None:intergenic | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | + | chr7_2:72682792-72682811 | Msa1074740:CDS | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | + | chr7_2:72682830-72682849 | Msa1074740:CDS | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | + | chr7_2:72682886-72682905 | Msa1074740:CDS | 40.0% | |
| TGTCATGTAGGCTCAAACTA+TGG | + | chr7_2:72683004-72683023 | Msa1074740:intron | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | + | chr7_2:72683067-72683086 | Msa1074740:intron | 40.0% | |
| AGCAATGTTATTCACCTGCT+GGG | - | chr7_2:72683383-72683402 | None:intergenic | 40.0% | |
| TAGCAATGTTATTCACCTGC+TGG | - | chr7_2:72683384-72683403 | None:intergenic | 40.0% | |
| GTTTCAGCATCAATGCTTGT+TGG | - | chr7_2:72683519-72683538 | None:intergenic | 40.0% | |
| GACAATGCTCTAATCATTGG+AGG | + | chr7_2:72683808-72683827 | Msa1074740:intron | 40.0% | |
| ACCTCCTATCATTGCAAAGA+AGG | + | chr7_2:72683967-72683986 | Msa1074740:CDS | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | + | chr7_2:72683968-72683987 | Msa1074740:CDS | 40.0% | |
| TGTCTCACAGTAGGAACTAT+AGG | - | chr7_2:72684157-72684176 | None:intergenic | 40.0% | |
| CAGCACCCTGATCTTATAAA+AGG | + | chr7_2:72684175-72684194 | Msa1074740:intron | 40.0% | |
| AGTGTGATAAGTGCTCAGAA+TGG | + | chr7_2:72684385-72684404 | Msa1074740:CDS | 40.0% | |
| TGCTCAGAATGGAGAAAGTT+GGG | + | chr7_2:72684396-72684415 | Msa1074740:CDS | 40.0% | |
| TGGGATCTGTGGAGAATTTA+TGG | + | chr7_2:72684415-72684434 | Msa1074740:CDS | 40.0% | |
| GGGATCTGTGGAGAATTTAT+GGG | + | chr7_2:72684416-72684435 | Msa1074740:CDS | 40.0% | |
| GGATCTGTGGAGAATTTATG+GGG | + | chr7_2:72684417-72684436 | Msa1074740:CDS | 40.0% | |
| ! | AGCTTTTCTATGCTGTCATC+AGG | + | chr7_2:72684518-72684537 | Msa1074740:intron | 40.0% |
| !! | TTGCTTTTCACCACCACCAA+AGG | - | chr7_2:72682022-72682041 | None:intergenic | 45.0% |
| CTCCAATTCATCATGTCGCA+AGG | + | chr7_2:72682163-72682182 | Msa1074740:CDS | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | + | chr7_2:72682187-72682206 | Msa1074740:CDS | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | - | chr7_2:72682559-72682578 | None:intergenic | 45.0% | |
| TTTCCACCTATTTCGGAACC+AGG | + | chr7_2:72682748-72682767 | Msa1074740:CDS | 45.0% | |
| TTCCACCTATTTCGGAACCA+GGG | + | chr7_2:72682749-72682768 | Msa1074740:CDS | 45.0% | |
| AACATTTAACCGGATGGACC+CGG | + | chr7_2:72683073-72683092 | Msa1074740:CDS | 45.0% | |
| CTATTATCAGTTTCTCCCCC+GGG | - | chr7_2:72683094-72683113 | None:intergenic | 45.0% | |
| CCTATTATCAGTTTCTCCCC+CGG | - | chr7_2:72683095-72683114 | None:intergenic | 45.0% | |
| CGGGGGAGAAACTGATAATA+GGG | + | chr7_2:72683093-72683112 | Msa1074740:CDS | 45.0% | |
| ! | AATAGGGTTTCGAAGGGCAT+CGG | + | chr7_2:72683109-72683128 | Msa1074740:CDS | 45.0% |
| !! | GGCATCGGTTTCTTCTATAC+AGG | + | chr7_2:72683124-72683143 | Msa1074740:CDS | 45.0% |
| CCCTTCTTTGCAATGATAGG+AGG | - | chr7_2:72683971-72683990 | None:intergenic | 45.0% | |
| ACAACAGGATGAACGAGCAA+TGG | + | chr7_2:72684358-72684377 | Msa1074740:intron | 45.0% | |
| GTGCTCAGAATGGAGAAAGT+TGG | + | chr7_2:72684395-72684414 | Msa1074740:CDS | 45.0% | |
| ATGGAGAAAGTTGGGATCTG+TGG | + | chr7_2:72684404-72684423 | Msa1074740:CDS | 45.0% | |
| CTCGAATAGTGGCACAATGG+CGG | - | chr7_2:72682556-72682575 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | + | chr7_2:72682588-72682607 | Msa1074740:CDS | 50.0% | |
| TCCACCTATTTCGGAACCAG+GGG | + | chr7_2:72682750-72682769 | Msa1074740:CDS | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | - | chr7_2:72682757-72682776 | None:intergenic | 50.0% | |
| ACATTTAACCGGATGGACCC+GGG | + | chr7_2:72683074-72683093 | Msa1074740:CDS | 50.0% | |
| CCGGGGGAGAAACTGATAAT+AGG | + | chr7_2:72683092-72683111 | Msa1074740:CDS | 50.0% | |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | - | chr7_2:72682066-72682085 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | + | chr7_2:72682596-72682615 | Msa1074740:CDS | 55.0% |
| CCACCTATTTCGGAACCAGG+GGG | + | chr7_2:72682751-72682770 | Msa1074740:CDS | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | + | chr7_2:72683075-72683094 | Msa1074740:CDS | 55.0% | |
| ATTTAACCGGATGGACCCGG+GGG | + | chr7_2:72683076-72683095 | Msa1074740:CDS | 55.0% | |
| !! | TCAGGGTGCTGTCTCACAGT+AGG | - | chr7_2:72684166-72684185 | None:intergenic | 55.0% |
| CCCCCTGGTTCCGAAATAGG+TGG | - | chr7_2:72682754-72682773 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | - | chr7_2:72683085-72683104 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 72681937 | 72684567 | 72681937 | ID=Msa1074740;Name=Msa1074740 |
| chr7_2 | mRNA | 72681937 | 72684567 | 72681937 | ID=Msa1074740-mRNA-1;Parent=Msa1074740;Name=Msa1074740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|8|0|360 |
| chr7_2 | exon | 72681937 | 72682274 | 72681937 | ID=Msa1074740-mRNA-1:exon:16763;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72682545 | 72682641 | 72682545 | ID=Msa1074740-mRNA-1:exon:16764;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72682742 | 72682916 | 72682742 | ID=Msa1074740-mRNA-1:exon:16765;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72683072 | 72683145 | 72683072 | ID=Msa1074740-mRNA-1:exon:16766;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72683388 | 72683633 | 72683388 | ID=Msa1074740-mRNA-1:exon:16767;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72683965 | 72684005 | 72683965 | ID=Msa1074740-mRNA-1:exon:16768;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72684365 | 72684448 | 72684365 | ID=Msa1074740-mRNA-1:exon:16769;Parent=Msa1074740-mRNA-1 |
| chr7_2 | exon | 72684540 | 72684567 | 72684540 | ID=Msa1074740-mRNA-1:exon:16770;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72681937 | 72682274 | 72681937 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72682545 | 72682641 | 72682545 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72682742 | 72682916 | 72682742 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72683072 | 72683145 | 72683072 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72683388 | 72683633 | 72683388 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72683965 | 72684005 | 72683965 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72684365 | 72684448 | 72684365 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| chr7_2 | CDS | 72684540 | 72684567 | 72684540 | ID=Msa1074740-mRNA-1:cds;Parent=Msa1074740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
