Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075370 | XP_003625279.1 | 94.257 | 296 | 15 | 1 | 1 | 294 | 1 | 296 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075370 | sp|P46665|HAT14_ARATH | 51.393 | 323 | 93 | 9 | 1 | 275 | 1 | 307 | 3.70e-86 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075370 | G7KVF5 | 94.257 | 296 | 15 | 1 | 1 | 294 | 1 | 296 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1075370 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075370 | MtrunA17_Chr7g0258831 | 94.257 | 296 | 15 | 1 | 1 | 294 | 1 | 296 | 0.0 | 536 |
| Msa1075370 | MtrunA17_Chr1g0175651 | 68.841 | 276 | 76 | 7 | 1 | 273 | 1 | 269 | 1.38e-115 | 334 |
| Msa1075370 | MtrunA17_Chr2g0308611 | 78.571 | 154 | 23 | 2 | 135 | 285 | 181 | 327 | 3.53e-77 | 238 |
| Msa1075370 | MtrunA17_Chr4g0055851 | 64.921 | 191 | 49 | 3 | 87 | 272 | 58 | 235 | 8.22e-74 | 228 |
| Msa1075370 | MtrunA17_Chr5g0399491 | 62.887 | 194 | 64 | 4 | 87 | 279 | 72 | 258 | 2.28e-70 | 219 |
| Msa1075370 | MtrunA17_Chr4g0054421 | 77.600 | 125 | 26 | 1 | 148 | 270 | 115 | 239 | 1.54e-65 | 206 |
| Msa1075370 | MtrunA17_Chr5g0400781 | 68.345 | 139 | 44 | 0 | 149 | 287 | 114 | 252 | 3.59e-65 | 205 |
| Msa1075370 | MtrunA17_Chr8g0335131 | 66.279 | 172 | 45 | 3 | 108 | 269 | 90 | 258 | 1.25e-64 | 205 |
| Msa1075370 | MtrunA17_Chr1g0151971 | 71.795 | 117 | 31 | 1 | 157 | 271 | 129 | 245 | 5.61e-55 | 179 |
| Msa1075370 | MtrunA17_Chr4g0044091 | 65.323 | 124 | 36 | 2 | 153 | 269 | 59 | 182 | 2.99e-48 | 159 |
| Msa1075370 | MtrunA17_Chr3g0135331 | 63.121 | 141 | 51 | 1 | 149 | 289 | 136 | 275 | 5.97e-48 | 162 |
| Msa1075370 | MtrunA17_Chr2g0299031 | 56.618 | 136 | 55 | 2 | 136 | 270 | 63 | 195 | 1.66e-40 | 140 |
| Msa1075370 | MtrunA17_Chr4g0071411 | 57.143 | 119 | 37 | 2 | 160 | 269 | 90 | 203 | 8.04e-36 | 128 |
| Msa1075370 | MtrunA17_Chr7g0217111 | 43.590 | 117 | 62 | 1 | 136 | 248 | 58 | 174 | 1.47e-19 | 86.3 |
| Msa1075370 | MtrunA17_Chr6g0450991 | 38.028 | 142 | 84 | 1 | 155 | 292 | 64 | 205 | 3.31e-19 | 85.5 |
| Msa1075370 | MtrunA17_Chr5g0416391 | 45.283 | 106 | 54 | 1 | 150 | 251 | 69 | 174 | 2.32e-18 | 83.2 |
| Msa1075370 | MtrunA17_Chr1g0179581 | 45.977 | 87 | 47 | 0 | 154 | 240 | 24 | 110 | 2.94e-18 | 78.6 |
| Msa1075370 | MtrunA17_Chr4g0060031 | 48.077 | 104 | 52 | 1 | 144 | 245 | 79 | 182 | 3.82e-18 | 83.2 |
| Msa1075370 | MtrunA17_Chr8g0362151 | 41.085 | 129 | 69 | 3 | 130 | 251 | 46 | 174 | 4.87e-18 | 82.0 |
| Msa1075370 | MtrunA17_Chr6g0453021 | 39.726 | 146 | 77 | 3 | 110 | 244 | 44 | 189 | 2.29e-17 | 80.1 |
| Msa1075370 | MtrunA17_Chr5g0415941 | 47.872 | 94 | 42 | 1 | 158 | 244 | 87 | 180 | 3.30e-17 | 80.5 |
| Msa1075370 | MtrunA17_Chr7g0265521 | 41.935 | 93 | 54 | 0 | 153 | 245 | 58 | 150 | 4.73e-17 | 78.6 |
| Msa1075370 | MtrunA17_Chr3g0119291 | 45.283 | 106 | 49 | 2 | 149 | 245 | 48 | 153 | 1.77e-16 | 77.4 |
| Msa1075370 | MtrunA17_Chr8g0362751 | 45.745 | 94 | 44 | 1 | 158 | 244 | 89 | 182 | 3.78e-16 | 77.0 |
| Msa1075370 | MtrunA17_Chr8g0381741 | 43.750 | 112 | 53 | 2 | 141 | 245 | 40 | 148 | 2.35e-15 | 75.1 |
| Msa1075370 | MtrunA17_Chr3g0123691 | 35.294 | 170 | 89 | 4 | 119 | 279 | 33 | 190 | 4.38e-15 | 73.9 |
| Msa1075370 | MtrunA17_Chr8g0346251 | 42.683 | 82 | 47 | 0 | 162 | 243 | 45 | 126 | 5.20e-12 | 64.7 |
| Msa1075370 | MtrunA17_Chr3g0127511 | 41.935 | 93 | 47 | 1 | 161 | 246 | 41 | 133 | 6.34e-12 | 64.3 |
| Msa1075370 | MtrunA17_Chr5g0410711 | 30.769 | 130 | 89 | 1 | 125 | 254 | 60 | 188 | 2.95e-11 | 63.9 |
| Msa1075370 | MtrunA17_Chr5g0403691 | 38.889 | 108 | 61 | 1 | 135 | 242 | 35 | 137 | 7.83e-11 | 60.8 |
| Msa1075370 | MtrunA17_Chr2g0331581 | 35.246 | 122 | 60 | 1 | 161 | 282 | 145 | 247 | 8.86e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075370 | AT5G06710.1 | 51.393 | 323 | 93 | 9 | 1 | 275 | 1 | 307 | 3.76e-87 | 264 |
| Msa1075370 | AT5G47370.1 | 55.652 | 230 | 85 | 7 | 52 | 271 | 22 | 244 | 6.83e-70 | 218 |
| Msa1075370 | AT4G37790.1 | 81.967 | 122 | 22 | 0 | 149 | 270 | 117 | 238 | 4.17e-69 | 216 |
| Msa1075370 | AT2G44910.1 | 49.237 | 262 | 98 | 7 | 46 | 272 | 17 | 278 | 1.14e-67 | 213 |
| Msa1075370 | AT3G60390.1 | 58.333 | 204 | 58 | 4 | 87 | 269 | 77 | 274 | 6.12e-67 | 211 |
| Msa1075370 | AT2G22800.1 | 77.049 | 122 | 28 | 0 | 149 | 270 | 104 | 225 | 3.63e-65 | 206 |
| Msa1075370 | AT4G16780.1 | 62.857 | 175 | 57 | 3 | 106 | 272 | 70 | 244 | 3.82e-65 | 206 |
| Msa1075370 | AT4G17460.1 | 51.969 | 254 | 96 | 10 | 52 | 288 | 21 | 265 | 6.82e-64 | 202 |
| Msa1075370 | AT2G01430.1 | 61.029 | 136 | 51 | 2 | 135 | 270 | 116 | 249 | 1.44e-47 | 160 |
| Msa1075370 | AT1G70920.1 | 58.015 | 131 | 46 | 2 | 142 | 270 | 51 | 174 | 1.04e-39 | 138 |
| Msa1075370 | AT1G70920.2 | 58.015 | 131 | 46 | 2 | 142 | 270 | 21 | 144 | 1.24e-39 | 137 |
| Msa1075370 | AT5G06710.4 | 42.412 | 257 | 84 | 9 | 1 | 209 | 1 | 241 | 1.66e-39 | 139 |
| Msa1075370 | AT2G01430.2 | 62.667 | 75 | 28 | 0 | 135 | 209 | 116 | 190 | 1.63e-23 | 95.9 |
| Msa1075370 | AT5G06710.2 | 36.087 | 230 | 83 | 10 | 1 | 182 | 1 | 214 | 1.91e-18 | 82.8 |
| Msa1075370 | AT5G06710.3 | 36.087 | 230 | 83 | 10 | 1 | 182 | 1 | 214 | 1.91e-18 | 82.8 |
| Msa1075370 | AT1G26960.1 | 45.690 | 116 | 54 | 3 | 143 | 252 | 57 | 169 | 3.89e-18 | 82.4 |
| Msa1075370 | AT1G69780.1 | 45.872 | 109 | 56 | 2 | 140 | 245 | 64 | 172 | 3.97e-18 | 83.2 |
| Msa1075370 | AT5G03790.1 | 39.823 | 113 | 67 | 1 | 153 | 264 | 72 | 184 | 3.80e-17 | 79.3 |
| Msa1075370 | AT2G36610.1 | 42.157 | 102 | 51 | 1 | 153 | 246 | 66 | 167 | 3.90e-17 | 78.2 |
| Msa1075370 | AT3G01220.1 | 42.857 | 119 | 56 | 2 | 144 | 250 | 65 | 183 | 6.44e-17 | 79.3 |
| Msa1075370 | AT5G15150.1 | 45.000 | 120 | 55 | 4 | 136 | 247 | 92 | 208 | 1.62e-16 | 79.0 |
| Msa1075370 | AT3G01470.1 | 46.739 | 92 | 49 | 0 | 158 | 249 | 68 | 159 | 6.71e-16 | 76.3 |
| Msa1075370 | AT2G22430.1 | 45.455 | 99 | 50 | 1 | 154 | 248 | 58 | 156 | 5.06e-15 | 74.3 |
| Msa1075370 | AT5G65310.1 | 42.857 | 98 | 49 | 1 | 155 | 245 | 69 | 166 | 7.58e-15 | 73.9 |
| Msa1075370 | AT5G65310.2 | 42.857 | 98 | 49 | 1 | 155 | 245 | 51 | 148 | 7.83e-15 | 73.6 |
| Msa1075370 | AT1G27045.5 | 56.061 | 66 | 29 | 0 | 158 | 223 | 25 | 90 | 1.88e-14 | 70.9 |
| Msa1075370 | AT1G27045.3 | 56.061 | 66 | 29 | 0 | 158 | 223 | 25 | 90 | 1.88e-14 | 70.9 |
| Msa1075370 | AT1G27045.2 | 56.061 | 66 | 29 | 0 | 158 | 223 | 17 | 82 | 1.94e-14 | 70.5 |
| Msa1075370 | AT1G27045.1 | 56.061 | 66 | 29 | 0 | 158 | 223 | 68 | 133 | 2.60e-14 | 71.2 |
| Msa1075370 | AT1G27045.4 | 45.098 | 102 | 48 | 2 | 158 | 252 | 68 | 168 | 3.20e-14 | 71.2 |
| Msa1075370 | AT2G18550.1 | 45.361 | 97 | 52 | 1 | 148 | 244 | 52 | 147 | 4.71e-14 | 70.5 |
| Msa1075370 | AT4G40060.1 | 42.857 | 98 | 52 | 1 | 154 | 247 | 55 | 152 | 6.19e-14 | 71.2 |
| Msa1075370 | AT5G03790.2 | 41.053 | 95 | 56 | 0 | 153 | 247 | 72 | 166 | 1.16e-13 | 68.6 |
| Msa1075370 | AT2G46680.1 | 41.758 | 91 | 53 | 0 | 153 | 243 | 27 | 117 | 1.25e-13 | 69.7 |
| Msa1075370 | AT2G46680.2 | 41.758 | 91 | 53 | 0 | 153 | 243 | 27 | 117 | 1.33e-13 | 69.7 |
| Msa1075370 | AT4G36740.2 | 41.837 | 98 | 56 | 1 | 147 | 244 | 46 | 142 | 4.75e-12 | 64.7 |
| Msa1075370 | AT4G36740.1 | 41.837 | 98 | 56 | 1 | 147 | 244 | 45 | 141 | 5.16e-12 | 64.3 |
| Msa1075370 | AT3G61890.1 | 42.169 | 83 | 48 | 0 | 161 | 243 | 33 | 115 | 1.67e-11 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCACGACTACTGTTTC+TGG | 0.182434 | 7_2:+73569685 | None:intergenic |
| CTTCGAATTCCCTGGCTTAA+TGG | 0.240731 | 7_2:-73569985 | Msa1075370:CDS |
| ACTAGCGATGATGAAGAAAA+TGG | 0.264544 | 7_2:-73569647 | Msa1075370:CDS |
| TTGTTTGGTGGCGGTGGTTC+CGG | 0.297836 | 7_2:+73568331 | None:intergenic |
| AATATGACGCTGCACTATTC+GGG | 0.319466 | 7_2:+73569753 | None:intergenic |
| CTCTAACAGAAGAAAATAAA+AGG | 0.327202 | 7_2:-73568472 | Msa1075370:CDS |
| TAATATGACGCTGCACTATT+CGG | 0.334434 | 7_2:+73569752 | None:intergenic |
| TTATTGTTGGCCGCGCCCAC+CGG | 0.335066 | 7_2:+73568292 | None:intergenic |
| CCACTGACGCCAACCGGAAT+TGG | 0.348785 | 7_2:+73569810 | None:intergenic |
| GAAGAAACTCAGACTCTCTA+AGG | 0.373372 | 7_2:-73569615 | Msa1075370:CDS |
| ATAAGAACCGTTATTATTGT+TGG | 0.375257 | 7_2:+73568279 | None:intergenic |
| GGTAATCGAGGTGGTTTGTT+TGG | 0.375762 | 7_2:+73568316 | None:intergenic |
| GGAGAAGAGTAGAAAACTAT+AGG | 0.382606 | 7_2:+73570298 | None:intergenic |
| CTCCACTTCTTCGAATTCCC+TGG | 0.385540 | 7_2:-73569993 | Msa1075370:CDS |
| CACTTCCGTTTGCTTTAACT+TGG | 0.385691 | 7_2:+73568526 | None:intergenic |
| ATAGCGAAGGGCAATAATCT+TGG | 0.392033 | 7_2:+73568226 | None:intergenic |
| TATTGTTGGCCGCGCCCACC+GGG | 0.394907 | 7_2:+73568293 | None:intergenic |
| GTCCACGTCAAGTAGAAGTT+TGG | 0.395922 | 7_2:-73568726 | Msa1075370:CDS |
| GGCGGTGGTTCCGGCGGTGT+TGG | 0.400130 | 7_2:+73568340 | None:intergenic |
| TATCGGACGTGAACCAATTC+CGG | 0.402811 | 7_2:-73569823 | Msa1075370:CDS |
| AATCGAGGTGGTTTGTTTGG+TGG | 0.415531 | 7_2:+73568319 | None:intergenic |
| CTATGTGTCCTTCTTGTGAA+AGG | 0.416282 | 7_2:-73568370 | Msa1075370:CDS |
| GGCTGCAGTTGGTGTGGAAC+CGG | 0.416952 | 7_2:-73569852 | Msa1075370:intron |
| ATGGAGCTGGCTTTGAGCTT+AGG | 0.426776 | 7_2:-73570198 | Msa1075370:CDS |
| GAGTCTGAGTTTCTTCCTTG+TGG | 0.443252 | 7_2:+73569622 | None:intergenic |
| CCAATTCCGGTTGGCGTCAG+TGG | 0.447214 | 7_2:-73569810 | Msa1075370:CDS |
| GGTGGTTCCGGCGGTGTTGG+TGG | 0.451062 | 7_2:+73568343 | None:intergenic |
| TATCCTCCACTGACGCCAAC+CGG | 0.456571 | 7_2:+73569804 | None:intergenic |
| TGTGGAACCGGCGAGGGTAT+CGG | 0.464515 | 7_2:-73569840 | Msa1075370:CDS |
| AGAAAATAAAAGGTTACAAA+AGG | 0.465210 | 7_2:-73568462 | Msa1075370:CDS |
| GGTGGTTTGTTTGGTGGCGG+TGG | 0.467951 | 7_2:+73568325 | None:intergenic |
| AGTTCAATCACCGATGGAGC+TGG | 0.469281 | 7_2:-73570211 | Msa1075370:exon |
| TTCGAAGAAGTGGAGAAGGC+TGG | 0.476464 | 7_2:+73570001 | None:intergenic |
| GTGGAGAAGGCTGGGAGTGA+AGG | 0.477756 | 7_2:+73570010 | None:intergenic |
| CACATAGTGAGAGTGGTAGC+TGG | 0.479169 | 7_2:+73568386 | None:intergenic |
| CAGAAACAGTAGTCGTGAAG+AGG | 0.481552 | 7_2:-73569684 | Msa1075370:CDS |
| GAGTGAAGGACCGGTGTTGA+AGG | 0.484612 | 7_2:+73570024 | None:intergenic |
| TTTACTTGCACCATTAAGCC+AGG | 0.488537 | 7_2:+73569975 | None:intergenic |
| GGAAGAAGATTGAGCTGAAT+GGG | 0.496713 | 7_2:+73570045 | None:intergenic |
| TGAAACTGCAGCTCCCTCTT+CGG | 0.499081 | 7_2:+73569778 | None:intergenic |
| CAAGTTAAAGCAAACGGAAG+TGG | 0.499846 | 7_2:-73568525 | Msa1075370:CDS |
| TATGTGTCCTTCTTGTGAAA+GGG | 0.502852 | 7_2:-73568369 | Msa1075370:CDS |
| CTAGCGATGATGAAGAAAAT+GGG | 0.520663 | 7_2:-73569646 | Msa1075370:CDS |
| GTTAAACCATGTTCTTCAAG+TGG | 0.524683 | 7_2:+73570108 | None:intergenic |
| GCAATAATCTTGGCTTCACA+AGG | 0.527555 | 7_2:+73568236 | None:intergenic |
| AGGAAGAAGATTGAGCTGAA+TGG | 0.527689 | 7_2:+73570044 | None:intergenic |
| CAGGACCAAGTTAAAGCAAA+CGG | 0.533115 | 7_2:-73568531 | Msa1075370:CDS |
| CGAGGTGGTTTGTTTGGTGG+CGG | 0.533260 | 7_2:+73568322 | None:intergenic |
| CAATCTTCTTCCTTCAACAC+CGG | 0.539071 | 7_2:-73570034 | Msa1075370:CDS |
| GCAGAAACAGAAACTTGCTC+TGG | 0.539316 | 7_2:-73568767 | Msa1075370:intron |
| AAGCTCAAAGCCAGCTCCAT+CGG | 0.539731 | 7_2:+73570201 | None:intergenic |
| TCGAAGAAGTGGAGAAGGCT+GGG | 0.542272 | 7_2:+73570002 | None:intergenic |
| AGCCAGGGAATTCGAAGAAG+TGG | 0.543327 | 7_2:+73569991 | None:intergenic |
| AATCTGATTAATTATAGCGA+AGG | 0.547449 | 7_2:+73568213 | None:intergenic |
| GAAGGCTGGGAGTGAAGGAC+CGG | 0.549545 | 7_2:+73570015 | None:intergenic |
| ATCGTTTCTAGTATTCCAAA+GGG | 0.550515 | 7_2:+73570277 | None:intergenic |
| AACTTTAGTTCAATCACCGA+TGG | 0.551483 | 7_2:-73570217 | Msa1075370:exon |
| TTGTTGGCCGCGCCCACCGG+GGG | 0.552435 | 7_2:+73568295 | None:intergenic |
| GTGGCAACCCTTTCACAAGA+AGG | 0.556254 | 7_2:+73568362 | None:intergenic |
| AATCGTTTCTAGTATTCCAA+AGG | 0.560250 | 7_2:+73570276 | None:intergenic |
| AGAAACAGTAGTCGTGAAGA+GGG | 0.560398 | 7_2:-73569683 | Msa1075370:CDS |
| CAGTAGTCGTGAAGAGGGTG+CGG | 0.564654 | 7_2:-73569678 | Msa1075370:CDS |
| TATTATTACAGGATTGAGAG+TGG | 0.576136 | 7_2:+73569553 | None:intergenic |
| ATCTGATTAATTATAGCGAA+GGG | 0.580480 | 7_2:+73568214 | None:intergenic |
| TTCACGTCCGATACCCTCGC+CGG | 0.580525 | 7_2:+73569833 | None:intergenic |
| AGGGTTGCCACCAACACCGC+CGG | 0.581021 | 7_2:-73568350 | Msa1075370:CDS |
| ATTCCGGTTGGCGTCAGTGG+AGG | 0.590366 | 7_2:-73569807 | Msa1075370:CDS |
| TGCATACCACTTGAAGAACA+TGG | 0.591621 | 7_2:-73570114 | Msa1075370:CDS |
| GCTGGAAGTTGCATGTAGAA+TGG | 0.591856 | 7_2:+73568404 | None:intergenic |
| GGAATTCGAAGAAGTGGAGA+AGG | 0.592815 | 7_2:+73569997 | None:intergenic |
| GGCGCGGCCAACAATAATAA+CGG | 0.593575 | 7_2:-73568286 | Msa1075370:exon |
| AGAAGATTGAGCTGAATGGG+TGG | 0.595515 | 7_2:+73570048 | None:intergenic |
| AGAAGGACACATAGTGAGAG+TGG | 0.600200 | 7_2:+73568379 | None:intergenic |
| TGCAGCGTCATATTATCAGA+TGG | 0.603249 | 7_2:-73569744 | Msa1075370:CDS |
| TTTGGTGGCGGTGGTTCCGG+CGG | 0.603705 | 7_2:+73568334 | None:intergenic |
| AACCAAACTTCTACTTGACG+TGG | 0.605331 | 7_2:+73568724 | None:intergenic |
| AGTTGGTGTGGAACCGGCGA+GGG | 0.608228 | 7_2:-73569846 | Msa1075370:CDS |
| GGTTTCAGAATAGAAGAGCA+AGG | 0.612001 | 7_2:-73568705 | Msa1075370:intron |
| GTTTACGGCTGCAGTTGGTG+TGG | 0.612070 | 7_2:-73569858 | Msa1075370:intron |
| CAGTTGGTGTGGAACCGGCG+AGG | 0.613503 | 7_2:-73569847 | Msa1075370:CDS |
| ATGAAGAAAATGGGTCCACA+AGG | 0.617090 | 7_2:-73569637 | Msa1075370:CDS |
| GAGCTGAATGGGTGGATCTG+AGG | 0.625502 | 7_2:+73570056 | None:intergenic |
| ATTGTTGGCCGCGCCCACCG+GGG | 0.631488 | 7_2:+73568294 | None:intergenic |
| GGACGTGAACCAATTCCGGT+TGG | 0.633044 | 7_2:-73569819 | Msa1075370:CDS |
| CAAACCACCTCGATTACCCC+CGG | 0.634117 | 7_2:-73568311 | Msa1075370:CDS |
| ATATGACGCTGCACTATTCG+GGG | 0.636746 | 7_2:+73569754 | None:intergenic |
| GTGGAGGATACTACCGAAGA+GGG | 0.653723 | 7_2:-73569791 | Msa1075370:CDS |
| AGTGGAGGATACTACCGAAG+AGG | 0.669703 | 7_2:-73569792 | Msa1075370:CDS |
| TTACTTGCACCATTAAGCCA+GGG | 0.674390 | 7_2:+73569976 | None:intergenic |
| CAATAATCTTGGCTTCACAA+GGG | 0.694843 | 7_2:+73568237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAATTACTAAAAAAT+AGG | + | chr7_2:73568519-73568538 | None:intergenic | 10.0% |
| !!! | CTTATAAATATTGTTATTTT+TGG | - | chr7_2:73569585-73569604 | Msa1075370:CDS | 10.0% |
| !! | GAAATAAACAAAATAAATAT+TGG | + | chr7_2:73569784-73569803 | None:intergenic | 10.0% |
| !!! | ATGTTTTTCATTTTTTTATT+AGG | + | chr7_2:73569850-73569869 | None:intergenic | 10.0% |
| !! | AAGTATAATTACTAAAAAAT+AGG | + | chr7_2:73568519-73568538 | None:intergenic | 10.0% |
| !!! | CTTATAAATATTGTTATTTT+TGG | - | chr7_2:73569585-73569604 | Msa1075370:CDS | 10.0% |
| !! | GAAATAAACAAAATAAATAT+TGG | + | chr7_2:73569784-73569803 | None:intergenic | 10.0% |
| !!! | ATGTTTTTCATTTTTTTATT+AGG | + | chr7_2:73569850-73569869 | None:intergenic | 10.0% |
| !! | TACTTATATGTTTATGTTTA+CGG | - | chr7_2:73568534-73568553 | Msa1075370:intron | 15.0% |
| !! | ATATAATTTATGATAAGTGT+GGG | + | chr7_2:73569256-73569275 | None:intergenic | 15.0% |
| !! | TAATTAAACAATCATTTAAC+TGG | + | chr7_2:73569338-73569357 | None:intergenic | 15.0% |
| !!! | TTTTTTATGATATGATTGAT+TGG | - | chr7_2:73570216-73570235 | Msa1075370:exon | 15.0% |
| !!! | ATTACCACTTTTTTTTTTTT+TGG | + | chr7_2:73570300-73570319 | None:intergenic | 15.0% |
| !! | TACTTATATGTTTATGTTTA+CGG | - | chr7_2:73568534-73568553 | Msa1075370:intron | 15.0% |
| !! | ATATAATTTATGATAAGTGT+GGG | + | chr7_2:73569256-73569275 | None:intergenic | 15.0% |
| !! | TAATTAAACAATCATTTAAC+TGG | + | chr7_2:73569338-73569357 | None:intergenic | 15.0% |
| !!! | TTTTTTATGATATGATTGAT+TGG | - | chr7_2:73570216-73570235 | Msa1075370:exon | 15.0% |
| !!! | ATTACCACTTTTTTTTTTTT+TGG | + | chr7_2:73570300-73570319 | None:intergenic | 15.0% |
| !!! | GAAAACTATAGGTTTTTAAA+AGG | + | chr7_2:73568101-73568120 | None:intergenic | 20.0% |
| !! | AATAAATACGAGAAAAAAGA+GGG | + | chr7_2:73568460-73568479 | None:intergenic | 20.0% |
| !! | AAATAAATACGAGAAAAAAG+AGG | + | chr7_2:73568461-73568480 | None:intergenic | 20.0% |
| !! | AGATATTTGAACAAATAGAA+TGG | - | chr7_2:73568930-73568949 | Msa1075370:intron | 20.0% |
| !!! | ATTTTTATCATGCAATACAT+GGG | - | chr7_2:73568983-73569002 | Msa1075370:intron | 20.0% |
| !! | ATATATATTTAGTACAAGTG+TGG | - | chr7_2:73569151-73569170 | Msa1075370:intron | 20.0% |
| !! | TATATATTTAGTACAAGTGT+GGG | - | chr7_2:73569152-73569171 | Msa1075370:intron | 20.0% |
| !!! | TGTTTTTAAAAATTGTGTGT+AGG | + | chr7_2:73569184-73569203 | None:intergenic | 20.0% |
| !! | GATATAATTTATGATAAGTG+TGG | + | chr7_2:73569257-73569276 | None:intergenic | 20.0% |
| !!! | CAGCAATATATATTTTTTGA+AGG | + | chr7_2:73569565-73569584 | None:intergenic | 20.0% |
| !! | AAATGAAAAACATAATGTAC+AGG | - | chr7_2:73569857-73569876 | Msa1075370:intron | 20.0% |
| !! | AGAAAATAAAAGGTTACAAA+AGG | - | chr7_2:73569945-73569964 | Msa1075370:intron | 20.0% |
| !! | GTAACCAAAAAAAAAAAAAG+TGG | - | chr7_2:73570293-73570312 | Msa1075370:five_prime_UTR | 20.0% |
| !!! | GAAAACTATAGGTTTTTAAA+AGG | + | chr7_2:73568101-73568120 | None:intergenic | 20.0% |
| !! | AATAAATACGAGAAAAAAGA+GGG | + | chr7_2:73568460-73568479 | None:intergenic | 20.0% |
| !! | AAATAAATACGAGAAAAAAG+AGG | + | chr7_2:73568461-73568480 | None:intergenic | 20.0% |
| !! | AGATATTTGAACAAATAGAA+TGG | - | chr7_2:73568930-73568949 | Msa1075370:intron | 20.0% |
| !!! | ATTTTTATCATGCAATACAT+GGG | - | chr7_2:73568983-73569002 | Msa1075370:intron | 20.0% |
| !! | ATATATATTTAGTACAAGTG+TGG | - | chr7_2:73569151-73569170 | Msa1075370:intron | 20.0% |
| !! | TATATATTTAGTACAAGTGT+GGG | - | chr7_2:73569152-73569171 | Msa1075370:intron | 20.0% |
| !!! | TGTTTTTAAAAATTGTGTGT+AGG | + | chr7_2:73569184-73569203 | None:intergenic | 20.0% |
| !! | GATATAATTTATGATAAGTG+TGG | + | chr7_2:73569257-73569276 | None:intergenic | 20.0% |
| !!! | CAGCAATATATATTTTTTGA+AGG | + | chr7_2:73569565-73569584 | None:intergenic | 20.0% |
| !! | AAATGAAAAACATAATGTAC+AGG | - | chr7_2:73569857-73569876 | Msa1075370:intron | 20.0% |
| !! | AGAAAATAAAAGGTTACAAA+AGG | - | chr7_2:73569945-73569964 | Msa1075370:intron | 20.0% |
| !! | GTAACCAAAAAAAAAAAAAG+TGG | - | chr7_2:73570293-73570312 | Msa1075370:five_prime_UTR | 20.0% |
| !! | TCAAACAAAGAGAATGTTTT+CGG | + | chr7_2:73568242-73568261 | None:intergenic | 25.0% |
| !! | TTTTGTTGGGTAATTTTGTA+GGG | + | chr7_2:73568268-73568287 | None:intergenic | 25.0% |
| !! | ATGGATTTTTCTATCATGAA+TGG | - | chr7_2:73568682-73568701 | Msa1075370:intron | 25.0% |
| !! | TTTTCTATCATGAATGGTAA+TGG | - | chr7_2:73568688-73568707 | Msa1075370:intron | 25.0% |
| ! | TGTTAGAGAGTTATTATTAC+AGG | + | chr7_2:73568868-73568887 | None:intergenic | 25.0% |
| !! | GATTTTTATCATGCAATACA+TGG | - | chr7_2:73568982-73569001 | Msa1075370:intron | 25.0% |
| !! | TTTTTATCATGCAATACATG+GGG | - | chr7_2:73568984-73569003 | Msa1075370:intron | 25.0% |
| !! | ATCCCATTTTCTCAAATTTT+AGG | - | chr7_2:73569024-73569043 | Msa1075370:intron | 25.0% |
| !! | TCCCATTTTCTCAAATTTTA+GGG | - | chr7_2:73569025-73569044 | Msa1075370:intron | 25.0% |
| ! | CATAATATAAAAAATCGCAG+AGG | - | chr7_2:73569416-73569435 | Msa1075370:intron | 25.0% |
| !! | GCAGAGGATAATTTTATATA+TGG | - | chr7_2:73569432-73569451 | Msa1075370:intron | 25.0% |
| !! | ATTATCTTTTCTGTGTTATG+AGG | - | chr7_2:73569738-73569757 | Msa1075370:CDS | 25.0% |
| ! | CTCTAACAGAAGAAAATAAA+AGG | - | chr7_2:73569935-73569954 | Msa1075370:intron | 25.0% |
| ! | ATAAGAACCGTTATTATTGT+TGG | + | chr7_2:73570131-73570150 | None:intergenic | 25.0% |
| ! | ATCTGATTAATTATAGCGAA+GGG | + | chr7_2:73570196-73570215 | None:intergenic | 25.0% |
| ! | AATCTGATTAATTATAGCGA+AGG | + | chr7_2:73570197-73570216 | None:intergenic | 25.0% |
| !! | TCAAACAAAGAGAATGTTTT+CGG | + | chr7_2:73568242-73568261 | None:intergenic | 25.0% |
| !! | TTTTGTTGGGTAATTTTGTA+GGG | + | chr7_2:73568268-73568287 | None:intergenic | 25.0% |
| !! | ATGGATTTTTCTATCATGAA+TGG | - | chr7_2:73568682-73568701 | Msa1075370:intron | 25.0% |
| !! | TTTTCTATCATGAATGGTAA+TGG | - | chr7_2:73568688-73568707 | Msa1075370:intron | 25.0% |
| ! | TGTTAGAGAGTTATTATTAC+AGG | + | chr7_2:73568868-73568887 | None:intergenic | 25.0% |
| !! | GATTTTTATCATGCAATACA+TGG | - | chr7_2:73568982-73569001 | Msa1075370:intron | 25.0% |
| !! | TTTTTATCATGCAATACATG+GGG | - | chr7_2:73568984-73569003 | Msa1075370:intron | 25.0% |
| !! | ATCCCATTTTCTCAAATTTT+AGG | - | chr7_2:73569024-73569043 | Msa1075370:intron | 25.0% |
| !! | TCCCATTTTCTCAAATTTTA+GGG | - | chr7_2:73569025-73569044 | Msa1075370:intron | 25.0% |
| ! | CATAATATAAAAAATCGCAG+AGG | - | chr7_2:73569416-73569435 | Msa1075370:intron | 25.0% |
| !! | GCAGAGGATAATTTTATATA+TGG | - | chr7_2:73569432-73569451 | Msa1075370:intron | 25.0% |
| !! | ATTATCTTTTCTGTGTTATG+AGG | - | chr7_2:73569738-73569757 | Msa1075370:CDS | 25.0% |
| ! | CTCTAACAGAAGAAAATAAA+AGG | - | chr7_2:73569935-73569954 | Msa1075370:intron | 25.0% |
| ! | ATAAGAACCGTTATTATTGT+TGG | + | chr7_2:73570131-73570150 | None:intergenic | 25.0% |
| ! | ATCTGATTAATTATAGCGAA+GGG | + | chr7_2:73570196-73570215 | None:intergenic | 25.0% |
| ! | AATCTGATTAATTATAGCGA+AGG | + | chr7_2:73570197-73570216 | None:intergenic | 25.0% |
| !! | ATCGTTTCTAGTATTCCAAA+GGG | + | chr7_2:73568133-73568152 | None:intergenic | 30.0% |
| !! | AATCGTTTCTAGTATTCCAA+AGG | + | chr7_2:73568134-73568153 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTGCTATGCTATG+AGG | + | chr7_2:73568173-73568192 | None:intergenic | 30.0% |
| !! | GTTTTGTTGGGTAATTTTGT+AGG | + | chr7_2:73568269-73568288 | None:intergenic | 30.0% |
| !!! | GGAATCACTTTTTTGGTTTA+AGG | + | chr7_2:73568333-73568352 | None:intergenic | 30.0% |
| TATTATTACAGGATTGAGAG+TGG | + | chr7_2:73568857-73568876 | None:intergenic | 30.0% | |
| ! | TTTTATCATGCAATACATGG+GGG | - | chr7_2:73568985-73569004 | Msa1075370:intron | 30.0% |
| AGAAAATGGGATGAAATTGA+AGG | + | chr7_2:73569016-73569035 | None:intergenic | 30.0% | |
| CCCCTAAAATTTGAGAAAAT+GGG | + | chr7_2:73569029-73569048 | None:intergenic | 30.0% | |
| ! | CCCATTTTCTCAAATTTTAG+GGG | - | chr7_2:73569026-73569045 | Msa1075370:intron | 30.0% |
| TCCCCTAAAATTTGAGAAAA+TGG | + | chr7_2:73569030-73569049 | None:intergenic | 30.0% | |
| !! | AAATTTTAGGGGAAGAACAT+TGG | - | chr7_2:73569037-73569056 | Msa1075370:intron | 30.0% |
| ATGGTCAAAATGTCAACTAT+CGG | + | chr7_2:73569229-73569248 | None:intergenic | 30.0% | |
| !! | TAGTTGACATTTTGACCATA+TGG | - | chr7_2:73569230-73569249 | Msa1075370:intron | 30.0% |
| ATCCAGAATGTTTGAATAGT+GGG | + | chr7_2:73569462-73569481 | None:intergenic | 30.0% | |
| AAAAAGTGGTAATATCAGAG+AGG | - | chr7_2:73570307-73570326 | Msa1075370:five_prime_UTR | 30.0% | |
| !! | ATCGTTTCTAGTATTCCAAA+GGG | + | chr7_2:73568133-73568152 | None:intergenic | 30.0% |
| !! | AATCGTTTCTAGTATTCCAA+AGG | + | chr7_2:73568134-73568153 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTGCTATGCTATG+AGG | + | chr7_2:73568173-73568192 | None:intergenic | 30.0% |
| !! | GTTTTGTTGGGTAATTTTGT+AGG | + | chr7_2:73568269-73568288 | None:intergenic | 30.0% |
| !!! | GGAATCACTTTTTTGGTTTA+AGG | + | chr7_2:73568333-73568352 | None:intergenic | 30.0% |
| TATTATTACAGGATTGAGAG+TGG | + | chr7_2:73568857-73568876 | None:intergenic | 30.0% | |
| ! | TTTTATCATGCAATACATGG+GGG | - | chr7_2:73568985-73569004 | Msa1075370:intron | 30.0% |
| AGAAAATGGGATGAAATTGA+AGG | + | chr7_2:73569016-73569035 | None:intergenic | 30.0% | |
| CCCCTAAAATTTGAGAAAAT+GGG | + | chr7_2:73569029-73569048 | None:intergenic | 30.0% | |
| ! | CCCATTTTCTCAAATTTTAG+GGG | - | chr7_2:73569026-73569045 | Msa1075370:intron | 30.0% |
| TCCCCTAAAATTTGAGAAAA+TGG | + | chr7_2:73569030-73569049 | None:intergenic | 30.0% | |
| !! | AAATTTTAGGGGAAGAACAT+TGG | - | chr7_2:73569037-73569056 | Msa1075370:intron | 30.0% |
| ATGGTCAAAATGTCAACTAT+CGG | + | chr7_2:73569229-73569248 | None:intergenic | 30.0% | |
| !! | TAGTTGACATTTTGACCATA+TGG | - | chr7_2:73569230-73569249 | Msa1075370:intron | 30.0% |
| ATCCAGAATGTTTGAATAGT+GGG | + | chr7_2:73569462-73569481 | None:intergenic | 30.0% | |
| AAAAAGTGGTAATATCAGAG+AGG | - | chr7_2:73570307-73570326 | Msa1075370:five_prime_UTR | 30.0% | |
| GGAGAAGAGTAGAAAACTAT+AGG | + | chr7_2:73568112-73568131 | None:intergenic | 35.0% | |
| ! | AACTTTAGTTCAATCACCGA+TGG | - | chr7_2:73568190-73568209 | Msa1075370:three_prime_UTR | 35.0% |
| !!! | GGTATGCAGAAAGTTTTGTT+GGG | + | chr7_2:73568281-73568300 | None:intergenic | 35.0% |
| !! | TGGTATGCAGAAAGTTTTGT+TGG | + | chr7_2:73568282-73568301 | None:intergenic | 35.0% |
| GTTAAACCATGTTCTTCAAG+TGG | + | chr7_2:73568302-73568321 | None:intergenic | 35.0% | |
| !!! | GATCTGAGGAATCACTTTTT+TGG | + | chr7_2:73568340-73568359 | None:intergenic | 35.0% |
| TAATATGACGCTGCACTATT+CGG | + | chr7_2:73568658-73568677 | None:intergenic | 35.0% | |
| ACTAGCGATGATGAAGAAAA+TGG | - | chr7_2:73568760-73568779 | Msa1075370:CDS | 35.0% | |
| CTAGCGATGATGAAGAAAAT+GGG | - | chr7_2:73568761-73568780 | Msa1075370:CDS | 35.0% | |
| TCCAGAATGTTTGAATAGTG+GGG | + | chr7_2:73569461-73569480 | None:intergenic | 35.0% | |
| GATCCAGAATGTTTGAATAG+TGG | + | chr7_2:73569463-73569482 | None:intergenic | 35.0% | |
| !!! | GTTTCTGTTTCTGCAGATTT+TGG | + | chr7_2:73569634-73569653 | None:intergenic | 35.0% |
| ATAGAAGAGCAAGGTAACTA+AGG | - | chr7_2:73569711-73569730 | Msa1075370:CDS | 35.0% | |
| TAGAAGAGCAAGGTAACTAA+GGG | - | chr7_2:73569712-73569731 | Msa1075370:CDS | 35.0% | |
| TATGTGTCCTTCTTGTGAAA+GGG | - | chr7_2:73570038-73570057 | Msa1075370:CDS | 35.0% | |
| CAATAATCTTGGCTTCACAA+GGG | + | chr7_2:73570173-73570192 | None:intergenic | 35.0% | |
| CCGAATTGACCAAACAAAAA+GGG | + | chr7_2:73568073-73568092 | None:intergenic | 35.0% | |
| GGAGAAGAGTAGAAAACTAT+AGG | + | chr7_2:73568112-73568131 | None:intergenic | 35.0% | |
| ! | AACTTTAGTTCAATCACCGA+TGG | - | chr7_2:73568190-73568209 | Msa1075370:three_prime_UTR | 35.0% |
| !!! | GGTATGCAGAAAGTTTTGTT+GGG | + | chr7_2:73568281-73568300 | None:intergenic | 35.0% |
| !! | TGGTATGCAGAAAGTTTTGT+TGG | + | chr7_2:73568282-73568301 | None:intergenic | 35.0% |
| GTTAAACCATGTTCTTCAAG+TGG | + | chr7_2:73568302-73568321 | None:intergenic | 35.0% | |
| !!! | GATCTGAGGAATCACTTTTT+TGG | + | chr7_2:73568340-73568359 | None:intergenic | 35.0% |
| TAATATGACGCTGCACTATT+CGG | + | chr7_2:73568658-73568677 | None:intergenic | 35.0% | |
| ACTAGCGATGATGAAGAAAA+TGG | - | chr7_2:73568760-73568779 | Msa1075370:CDS | 35.0% | |
| CTAGCGATGATGAAGAAAAT+GGG | - | chr7_2:73568761-73568780 | Msa1075370:CDS | 35.0% | |
| TCCAGAATGTTTGAATAGTG+GGG | + | chr7_2:73569461-73569480 | None:intergenic | 35.0% | |
| GATCCAGAATGTTTGAATAG+TGG | + | chr7_2:73569463-73569482 | None:intergenic | 35.0% | |
| !!! | GTTTCTGTTTCTGCAGATTT+TGG | + | chr7_2:73569634-73569653 | None:intergenic | 35.0% |
| ATAGAAGAGCAAGGTAACTA+AGG | - | chr7_2:73569711-73569730 | Msa1075370:CDS | 35.0% | |
| TAGAAGAGCAAGGTAACTAA+GGG | - | chr7_2:73569712-73569731 | Msa1075370:CDS | 35.0% | |
| TATGTGTCCTTCTTGTGAAA+GGG | - | chr7_2:73570038-73570057 | Msa1075370:CDS | 35.0% | |
| CAATAATCTTGGCTTCACAA+GGG | + | chr7_2:73570173-73570192 | None:intergenic | 35.0% | |
| ! | GTTTTCTACTCTTCTCCCTT+TGG | - | chr7_2:73568115-73568134 | Msa1075370:three_prime_UTR | 40.0% |
| TGCATACCACTTGAAGAACA+TGG | - | chr7_2:73568293-73568312 | Msa1075370:CDS | 40.0% | |
| GGAAGAAGATTGAGCTGAAT+GGG | + | chr7_2:73568365-73568384 | None:intergenic | 40.0% | |
| AGGAAGAAGATTGAGCTGAA+TGG | + | chr7_2:73568366-73568385 | None:intergenic | 40.0% | |
| CAATCTTCTTCCTTCAACAC+CGG | - | chr7_2:73568373-73568392 | Msa1075370:CDS | 40.0% | |
| TTACTTGCACCATTAAGCCA+GGG | + | chr7_2:73568434-73568453 | None:intergenic | 40.0% | |
| TTTACTTGCACCATTAAGCC+AGG | + | chr7_2:73568435-73568454 | None:intergenic | 40.0% | |
| TTTATGTTTACGGCTGCAGT+TGG | - | chr7_2:73568544-73568563 | Msa1075370:intron | 40.0% | |
| AATATGACGCTGCACTATTC+GGG | + | chr7_2:73568657-73568676 | None:intergenic | 40.0% | |
| TGCAGCGTCATATTATCAGA+TGG | - | chr7_2:73568663-73568682 | Msa1075370:intron | 40.0% | |
| AGAAACAGTAGTCGTGAAGA+GGG | - | chr7_2:73568724-73568743 | Msa1075370:CDS | 40.0% | |
| ATGAAGAAAATGGGTCCACA+AGG | - | chr7_2:73568770-73568789 | Msa1075370:intron | 40.0% | |
| GAAGAAACTCAGACTCTCTA+AGG | - | chr7_2:73568792-73568811 | Msa1075370:intron | 40.0% | |
| TATGATAAGTGTGGGCCATA+TGG | + | chr7_2:73569248-73569267 | None:intergenic | 40.0% | |
| CCAGAATGTTTGAATAGTGG+GGG | + | chr7_2:73569460-73569479 | None:intergenic | 40.0% | |
| AACCAAACTTCTACTTGACG+TGG | + | chr7_2:73569686-73569705 | None:intergenic | 40.0% | |
| GGTTTCAGAATAGAAGAGCA+AGG | - | chr7_2:73569702-73569721 | Msa1075370:CDS | 40.0% | |
| CAGGACCAAGTTAAAGCAAA+CGG | - | chr7_2:73569876-73569895 | Msa1075370:intron | 40.0% | |
| CACTTCCGTTTGCTTTAACT+TGG | + | chr7_2:73569884-73569903 | None:intergenic | 40.0% | |
| CAAGTTAAAGCAAACGGAAG+TGG | - | chr7_2:73569882-73569901 | Msa1075370:intron | 40.0% | |
| CTATGTGTCCTTCTTGTGAA+AGG | - | chr7_2:73570037-73570056 | Msa1075370:CDS | 40.0% | |
| GCAATAATCTTGGCTTCACA+AGG | + | chr7_2:73570174-73570193 | None:intergenic | 40.0% | |
| ATAGCGAAGGGCAATAATCT+TGG | + | chr7_2:73570184-73570203 | None:intergenic | 40.0% | |
| CCCGAATTGACCAAACAAAA+AGG | + | chr7_2:73568074-73568093 | None:intergenic | 40.0% | |
| ! | GTTTTCTACTCTTCTCCCTT+TGG | - | chr7_2:73568115-73568134 | Msa1075370:three_prime_UTR | 40.0% |
| TGCATACCACTTGAAGAACA+TGG | - | chr7_2:73568293-73568312 | Msa1075370:CDS | 40.0% | |
| GGAAGAAGATTGAGCTGAAT+GGG | + | chr7_2:73568365-73568384 | None:intergenic | 40.0% | |
| AGGAAGAAGATTGAGCTGAA+TGG | + | chr7_2:73568366-73568385 | None:intergenic | 40.0% | |
| CAATCTTCTTCCTTCAACAC+CGG | - | chr7_2:73568373-73568392 | Msa1075370:CDS | 40.0% | |
| TTACTTGCACCATTAAGCCA+GGG | + | chr7_2:73568434-73568453 | None:intergenic | 40.0% | |
| TTTACTTGCACCATTAAGCC+AGG | + | chr7_2:73568435-73568454 | None:intergenic | 40.0% | |
| TTTATGTTTACGGCTGCAGT+TGG | - | chr7_2:73568544-73568563 | Msa1075370:intron | 40.0% | |
| AATATGACGCTGCACTATTC+GGG | + | chr7_2:73568657-73568676 | None:intergenic | 40.0% | |
| TGCAGCGTCATATTATCAGA+TGG | - | chr7_2:73568663-73568682 | Msa1075370:intron | 40.0% | |
| AGAAACAGTAGTCGTGAAGA+GGG | - | chr7_2:73568724-73568743 | Msa1075370:CDS | 40.0% | |
| ATGAAGAAAATGGGTCCACA+AGG | - | chr7_2:73568770-73568789 | Msa1075370:intron | 40.0% | |
| GAAGAAACTCAGACTCTCTA+AGG | - | chr7_2:73568792-73568811 | Msa1075370:intron | 40.0% | |
| TATGATAAGTGTGGGCCATA+TGG | + | chr7_2:73569248-73569267 | None:intergenic | 40.0% | |
| CCAGAATGTTTGAATAGTGG+GGG | + | chr7_2:73569460-73569479 | None:intergenic | 40.0% | |
| AACCAAACTTCTACTTGACG+TGG | + | chr7_2:73569686-73569705 | None:intergenic | 40.0% | |
| GGTTTCAGAATAGAAGAGCA+AGG | - | chr7_2:73569702-73569721 | Msa1075370:CDS | 40.0% | |
| CAGGACCAAGTTAAAGCAAA+CGG | - | chr7_2:73569876-73569895 | Msa1075370:intron | 40.0% | |
| CACTTCCGTTTGCTTTAACT+TGG | + | chr7_2:73569884-73569903 | None:intergenic | 40.0% | |
| CAAGTTAAAGCAAACGGAAG+TGG | - | chr7_2:73569882-73569901 | Msa1075370:intron | 40.0% | |
| CTATGTGTCCTTCTTGTGAA+AGG | - | chr7_2:73570037-73570056 | Msa1075370:CDS | 40.0% | |
| GCAATAATCTTGGCTTCACA+AGG | + | chr7_2:73570174-73570193 | None:intergenic | 40.0% | |
| ATAGCGAAGGGCAATAATCT+TGG | + | chr7_2:73570184-73570203 | None:intergenic | 40.0% | |
| AGAAGATTGAGCTGAATGGG+TGG | + | chr7_2:73568362-73568381 | None:intergenic | 45.0% | |
| GGAATTCGAAGAAGTGGAGA+AGG | + | chr7_2:73568413-73568432 | None:intergenic | 45.0% | |
| CTTCGAATTCCCTGGCTTAA+TGG | - | chr7_2:73568422-73568441 | Msa1075370:CDS | 45.0% | |
| TATCGGACGTGAACCAATTC+CGG | - | chr7_2:73568584-73568603 | Msa1075370:intron | 45.0% | |
| ATATGACGCTGCACTATTCG+GGG | + | chr7_2:73568656-73568675 | None:intergenic | 45.0% | |
| CTCTTCACGACTACTGTTTC+TGG | + | chr7_2:73568725-73568744 | None:intergenic | 45.0% | |
| CAGAAACAGTAGTCGTGAAG+AGG | - | chr7_2:73568723-73568742 | Msa1075370:CDS | 45.0% | |
| GAGTCTGAGTTTCTTCCTTG+TGG | + | chr7_2:73568788-73568807 | None:intergenic | 45.0% | |
| CCCCCACTATTCAAACATTC+TGG | - | chr7_2:73569457-73569476 | Msa1075370:intron | 45.0% | |
| ! | GCAGAAACAGAAACTTGCTC+TGG | - | chr7_2:73569640-73569659 | Msa1075370:CDS | 45.0% |
| GTCCACGTCAAGTAGAAGTT+TGG | - | chr7_2:73569681-73569700 | Msa1075370:CDS | 45.0% | |
| GCTGGAAGTTGCATGTAGAA+TGG | + | chr7_2:73570006-73570025 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | + | chr7_2:73570031-73570050 | None:intergenic | 45.0% | |
| !! | AATCGAGGTGGTTTGTTTGG+TGG | + | chr7_2:73570091-73570110 | None:intergenic | 45.0% |
| !! | GGTAATCGAGGTGGTTTGTT+TGG | + | chr7_2:73570094-73570113 | None:intergenic | 45.0% |
| AGAAGATTGAGCTGAATGGG+TGG | + | chr7_2:73568362-73568381 | None:intergenic | 45.0% | |
| GGAATTCGAAGAAGTGGAGA+AGG | + | chr7_2:73568413-73568432 | None:intergenic | 45.0% | |
| CTTCGAATTCCCTGGCTTAA+TGG | - | chr7_2:73568422-73568441 | Msa1075370:CDS | 45.0% | |
| TATCGGACGTGAACCAATTC+CGG | - | chr7_2:73568584-73568603 | Msa1075370:intron | 45.0% | |
| ATATGACGCTGCACTATTCG+GGG | + | chr7_2:73568656-73568675 | None:intergenic | 45.0% | |
| CTCTTCACGACTACTGTTTC+TGG | + | chr7_2:73568725-73568744 | None:intergenic | 45.0% | |
| CAGAAACAGTAGTCGTGAAG+AGG | - | chr7_2:73568723-73568742 | Msa1075370:CDS | 45.0% | |
| GAGTCTGAGTTTCTTCCTTG+TGG | + | chr7_2:73568788-73568807 | None:intergenic | 45.0% | |
| CCCCCACTATTCAAACATTC+TGG | - | chr7_2:73569457-73569476 | Msa1075370:intron | 45.0% | |
| ! | GCAGAAACAGAAACTTGCTC+TGG | - | chr7_2:73569640-73569659 | Msa1075370:CDS | 45.0% |
| GTCCACGTCAAGTAGAAGTT+TGG | - | chr7_2:73569681-73569700 | Msa1075370:CDS | 45.0% | |
| GCTGGAAGTTGCATGTAGAA+TGG | + | chr7_2:73570006-73570025 | None:intergenic | 45.0% | |
| AGAAGGACACATAGTGAGAG+TGG | + | chr7_2:73570031-73570050 | None:intergenic | 45.0% | |
| !! | AATCGAGGTGGTTTGTTTGG+TGG | + | chr7_2:73570091-73570110 | None:intergenic | 45.0% |
| !! | GGTAATCGAGGTGGTTTGTT+TGG | + | chr7_2:73570094-73570113 | None:intergenic | 45.0% |
| AGTTCAATCACCGATGGAGC+TGG | - | chr7_2:73568196-73568215 | Msa1075370:three_prime_UTR | 50.0% | |
| AAGCTCAAAGCCAGCTCCAT+CGG | + | chr7_2:73568209-73568228 | None:intergenic | 50.0% | |
| !! | ATGGAGCTGGCTTTGAGCTT+AGG | - | chr7_2:73568209-73568228 | Msa1075370:three_prime_UTR | 50.0% |
| TCGAAGAAGTGGAGAAGGCT+GGG | + | chr7_2:73568408-73568427 | None:intergenic | 50.0% | |
| TTCGAAGAAGTGGAGAAGGC+TGG | + | chr7_2:73568409-73568428 | None:intergenic | 50.0% | |
| CTCCACTTCTTCGAATTCCC+TGG | - | chr7_2:73568414-73568433 | Msa1075370:CDS | 50.0% | |
| AGCCAGGGAATTCGAAGAAG+TGG | + | chr7_2:73568419-73568438 | None:intergenic | 50.0% | |
| AGTGGAGGATACTACCGAAG+AGG | - | chr7_2:73568615-73568634 | Msa1075370:intron | 50.0% | |
| GTGGAGGATACTACCGAAGA+GGG | - | chr7_2:73568616-73568635 | Msa1075370:intron | 50.0% | |
| TGAAACTGCAGCTCCCTCTT+CGG | + | chr7_2:73568632-73568651 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | + | chr7_2:73570024-73570043 | None:intergenic | 50.0% | |
| GTGGCAACCCTTTCACAAGA+AGG | + | chr7_2:73570048-73570067 | None:intergenic | 50.0% | |
| GGCGCGGCCAACAATAATAA+CGG | - | chr7_2:73570121-73570140 | Msa1075370:CDS | 50.0% | |
| AGTTCAATCACCGATGGAGC+TGG | - | chr7_2:73568196-73568215 | Msa1075370:three_prime_UTR | 50.0% | |
| AAGCTCAAAGCCAGCTCCAT+CGG | + | chr7_2:73568209-73568228 | None:intergenic | 50.0% | |
| !! | ATGGAGCTGGCTTTGAGCTT+AGG | - | chr7_2:73568209-73568228 | Msa1075370:three_prime_UTR | 50.0% |
| TCGAAGAAGTGGAGAAGGCT+GGG | + | chr7_2:73568408-73568427 | None:intergenic | 50.0% | |
| TTCGAAGAAGTGGAGAAGGC+TGG | + | chr7_2:73568409-73568428 | None:intergenic | 50.0% | |
| CTCCACTTCTTCGAATTCCC+TGG | - | chr7_2:73568414-73568433 | Msa1075370:CDS | 50.0% | |
| AGCCAGGGAATTCGAAGAAG+TGG | + | chr7_2:73568419-73568438 | None:intergenic | 50.0% | |
| AGTGGAGGATACTACCGAAG+AGG | - | chr7_2:73568615-73568634 | Msa1075370:intron | 50.0% | |
| GTGGAGGATACTACCGAAGA+GGG | - | chr7_2:73568616-73568635 | Msa1075370:intron | 50.0% | |
| TGAAACTGCAGCTCCCTCTT+CGG | + | chr7_2:73568632-73568651 | None:intergenic | 50.0% | |
| CACATAGTGAGAGTGGTAGC+TGG | + | chr7_2:73570024-73570043 | None:intergenic | 50.0% | |
| GTGGCAACCCTTTCACAAGA+AGG | + | chr7_2:73570048-73570067 | None:intergenic | 50.0% | |
| GGCGCGGCCAACAATAATAA+CGG | - | chr7_2:73570121-73570140 | Msa1075370:CDS | 50.0% | |
| GAGCTGAATGGGTGGATCTG+AGG | + | chr7_2:73568354-73568373 | None:intergenic | 55.0% | |
| ! | GAGTGAAGGACCGGTGTTGA+AGG | + | chr7_2:73568386-73568405 | None:intergenic | 55.0% |
| ! | GTTTACGGCTGCAGTTGGTG+TGG | - | chr7_2:73568549-73568568 | Msa1075370:intron | 55.0% |
| GGACGTGAACCAATTCCGGT+TGG | - | chr7_2:73568588-73568607 | Msa1075370:intron | 55.0% | |
| TATCCTCCACTGACGCCAAC+CGG | + | chr7_2:73568606-73568625 | None:intergenic | 55.0% | |
| CAGTAGTCGTGAAGAGGGTG+CGG | - | chr7_2:73568729-73568748 | Msa1075370:CDS | 55.0% | |
| !! | TTGTTTGGTGGCGGTGGTTC+CGG | + | chr7_2:73570079-73570098 | None:intergenic | 55.0% |
| !! | CGAGGTGGTTTGTTTGGTGG+CGG | + | chr7_2:73570088-73570107 | None:intergenic | 55.0% |
| CAAACCACCTCGATTACCCC+CGG | - | chr7_2:73570096-73570115 | Msa1075370:CDS | 55.0% | |
| GAGCTGAATGGGTGGATCTG+AGG | + | chr7_2:73568354-73568373 | None:intergenic | 55.0% | |
| ! | GAGTGAAGGACCGGTGTTGA+AGG | + | chr7_2:73568386-73568405 | None:intergenic | 55.0% |
| ! | GTTTACGGCTGCAGTTGGTG+TGG | - | chr7_2:73568549-73568568 | Msa1075370:intron | 55.0% |
| GGACGTGAACCAATTCCGGT+TGG | - | chr7_2:73568588-73568607 | Msa1075370:intron | 55.0% | |
| TATCCTCCACTGACGCCAAC+CGG | + | chr7_2:73568606-73568625 | None:intergenic | 55.0% | |
| CAGTAGTCGTGAAGAGGGTG+CGG | - | chr7_2:73568729-73568748 | Msa1075370:CDS | 55.0% | |
| !! | TTGTTTGGTGGCGGTGGTTC+CGG | + | chr7_2:73570079-73570098 | None:intergenic | 55.0% |
| !! | CGAGGTGGTTTGTTTGGTGG+CGG | + | chr7_2:73570088-73570107 | None:intergenic | 55.0% |
| CAAACCACCTCGATTACCCC+CGG | - | chr7_2:73570096-73570115 | Msa1075370:CDS | 55.0% | |
| GAAGGCTGGGAGTGAAGGAC+CGG | + | chr7_2:73568395-73568414 | None:intergenic | 60.0% | |
| GTGGAGAAGGCTGGGAGTGA+AGG | + | chr7_2:73568400-73568419 | None:intergenic | 60.0% | |
| ! | GGCTGCAGTTGGTGTGGAAC+CGG | - | chr7_2:73568555-73568574 | Msa1075370:intron | 60.0% |
| ! | AGTTGGTGTGGAACCGGCGA+GGG | - | chr7_2:73568561-73568580 | Msa1075370:intron | 60.0% |
| ! | TGTGGAACCGGCGAGGGTAT+CGG | - | chr7_2:73568567-73568586 | Msa1075370:intron | 60.0% |
| TTCACGTCCGATACCCTCGC+CGG | + | chr7_2:73568577-73568596 | None:intergenic | 60.0% | |
| CCACTGACGCCAACCGGAAT+TGG | + | chr7_2:73568600-73568619 | None:intergenic | 60.0% | |
| CCAATTCCGGTTGGCGTCAG+TGG | - | chr7_2:73568597-73568616 | Msa1075370:intron | 60.0% | |
| ATTCCGGTTGGCGTCAGTGG+AGG | - | chr7_2:73568600-73568619 | Msa1075370:intron | 60.0% | |
| !! | GGTGGTTTGTTTGGTGGCGG+TGG | + | chr7_2:73570085-73570104 | None:intergenic | 60.0% |
| TTATTGTTGGCCGCGCCCAC+CGG | + | chr7_2:73570118-73570137 | None:intergenic | 60.0% | |
| GAAGGCTGGGAGTGAAGGAC+CGG | + | chr7_2:73568395-73568414 | None:intergenic | 60.0% | |
| GTGGAGAAGGCTGGGAGTGA+AGG | + | chr7_2:73568400-73568419 | None:intergenic | 60.0% | |
| ! | GGCTGCAGTTGGTGTGGAAC+CGG | - | chr7_2:73568555-73568574 | Msa1075370:intron | 60.0% |
| ! | AGTTGGTGTGGAACCGGCGA+GGG | - | chr7_2:73568561-73568580 | Msa1075370:intron | 60.0% |
| ! | TGTGGAACCGGCGAGGGTAT+CGG | - | chr7_2:73568567-73568586 | Msa1075370:intron | 60.0% |
| TTCACGTCCGATACCCTCGC+CGG | + | chr7_2:73568577-73568596 | None:intergenic | 60.0% | |
| CCACTGACGCCAACCGGAAT+TGG | + | chr7_2:73568600-73568619 | None:intergenic | 60.0% | |
| CCAATTCCGGTTGGCGTCAG+TGG | - | chr7_2:73568597-73568616 | Msa1075370:intron | 60.0% | |
| ATTCCGGTTGGCGTCAGTGG+AGG | - | chr7_2:73568600-73568619 | Msa1075370:intron | 60.0% | |
| !! | GGTGGTTTGTTTGGTGGCGG+TGG | + | chr7_2:73570085-73570104 | None:intergenic | 60.0% |
| TTATTGTTGGCCGCGCCCAC+CGG | + | chr7_2:73570118-73570137 | None:intergenic | 60.0% | |
| ! | CAGTTGGTGTGGAACCGGCG+AGG | - | chr7_2:73568560-73568579 | Msa1075370:intron | 65.0% |
| AGGGTTGCCACCAACACCGC+CGG | - | chr7_2:73570057-73570076 | Msa1075370:CDS | 65.0% | |
| !! | TTTGGTGGCGGTGGTTCCGG+CGG | + | chr7_2:73570076-73570095 | None:intergenic | 65.0% |
| ACCACCTCGATTACCCCCGG+TGG | - | chr7_2:73570099-73570118 | Msa1075370:CDS | 65.0% | |
| CCACCTCGATTACCCCCGGT+GGG | - | chr7_2:73570100-73570119 | Msa1075370:CDS | 65.0% | |
| TATTGTTGGCCGCGCCCACC+GGG | + | chr7_2:73570117-73570136 | None:intergenic | 65.0% | |
| ! | CAGTTGGTGTGGAACCGGCG+AGG | - | chr7_2:73568560-73568579 | Msa1075370:intron | 65.0% |
| AGGGTTGCCACCAACACCGC+CGG | - | chr7_2:73570057-73570076 | Msa1075370:CDS | 65.0% | |
| !! | TTTGGTGGCGGTGGTTCCGG+CGG | + | chr7_2:73570076-73570095 | None:intergenic | 65.0% |
| ACCACCTCGATTACCCCCGG+TGG | - | chr7_2:73570099-73570118 | Msa1075370:CDS | 65.0% | |
| CCACCTCGATTACCCCCGGT+GGG | - | chr7_2:73570100-73570119 | Msa1075370:CDS | 65.0% | |
| TATTGTTGGCCGCGCCCACC+GGG | + | chr7_2:73570117-73570136 | None:intergenic | 65.0% | |
| ! | GGTGGTTCCGGCGGTGTTGG+TGG | + | chr7_2:73570067-73570086 | None:intergenic | 70.0% |
| CCCACCGGGGGTAATCGAGG+TGG | + | chr7_2:73570103-73570122 | None:intergenic | 70.0% | |
| TCGATTACCCCCGGTGGGCG+CGG | - | chr7_2:73570105-73570124 | Msa1075370:CDS | 70.0% | |
| ATTGTTGGCCGCGCCCACCG+GGG | + | chr7_2:73570116-73570135 | None:intergenic | 70.0% | |
| ! | GGTGGTTCCGGCGGTGTTGG+TGG | + | chr7_2:73570067-73570086 | None:intergenic | 70.0% |
| CCCACCGGGGGTAATCGAGG+TGG | + | chr7_2:73570103-73570122 | None:intergenic | 70.0% | |
| TCGATTACCCCCGGTGGGCG+CGG | - | chr7_2:73570105-73570124 | Msa1075370:CDS | 70.0% | |
| ATTGTTGGCCGCGCCCACCG+GGG | + | chr7_2:73570116-73570135 | None:intergenic | 70.0% | |
| GGCGGTGGTTCCGGCGGTGT+TGG | + | chr7_2:73570070-73570089 | None:intergenic | 75.0% | |
| GCGCCCACCGGGGGTAATCG+AGG | + | chr7_2:73570106-73570125 | None:intergenic | 75.0% | |
| TTGTTGGCCGCGCCCACCGG+GGG | + | chr7_2:73570115-73570134 | None:intergenic | 75.0% | |
| GGCGGTGGTTCCGGCGGTGT+TGG | + | chr7_2:73570070-73570089 | None:intergenic | 75.0% | |
| GCGCCCACCGGGGGTAATCG+AGG | + | chr7_2:73570106-73570125 | None:intergenic | 75.0% | |
| TTGTTGGCCGCGCCCACCGG+GGG | + | chr7_2:73570115-73570134 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 73568073 | 73570356 | 73568073 | ID=Msa1075370;Name=Msa1075370 |
| chr7_2 | mRNA | 73568073 | 73570356 | 73568073 | ID=Msa1075370-mRNA-1;Parent=Msa1075370;Name=Msa1075370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=136|1|1|1|1|1|4|219|294 |
| chr7_2 | exon | 73568073 | 73568550 | 73568073 | ID=Msa1075370-mRNA-1:exon:17121;Parent=Msa1075370-mRNA-1 |
| chr7_2 | exon | 73568706 | 73568785 | 73568706 | ID=Msa1075370-mRNA-1:exon:17120;Parent=Msa1075370-mRNA-1 |
| chr7_2 | exon | 73569562 | 73569866 | 73569562 | ID=Msa1075370-mRNA-1:exon:17119;Parent=Msa1075370-mRNA-1 |
| chr7_2 | exon | 73569980 | 73570356 | 73569980 | ID=Msa1075370-mRNA-1:exon:17118;Parent=Msa1075370-mRNA-1 |
| chr7_2 | five_prime_UTR | 73570221 | 73570356 | 73570221 | ID=Msa1075370-mRNA-1:five_prime_utr;Parent=Msa1075370-mRNA-1 |
| chr7_2 | CDS | 73569980 | 73570220 | 73569980 | ID=Msa1075370-mRNA-1:cds;Parent=Msa1075370-mRNA-1 |
| chr7_2 | CDS | 73569562 | 73569866 | 73569562 | ID=Msa1075370-mRNA-1:cds;Parent=Msa1075370-mRNA-1 |
| chr7_2 | CDS | 73568706 | 73568785 | 73568706 | ID=Msa1075370-mRNA-1:cds;Parent=Msa1075370-mRNA-1 |
| chr7_2 | CDS | 73568292 | 73568550 | 73568292 | ID=Msa1075370-mRNA-1:cds;Parent=Msa1075370-mRNA-1 |
| chr7_2 | three_prime_UTR | 73568073 | 73568291 | 73568073 | ID=Msa1075370-mRNA-1:three_prime_utr;Parent=Msa1075370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
