AlfalfaGEDB | Msa1075440

M. sativa cultivar zhongmu-4 / Msa1075440

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075440	AES81523.1	58.333	72	17	2	42	100	78	149	3.50e-15	82.0
Msa1075440	AES81523.1	94.231	156	9	0	103	258	6	161	7.57e-95	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075440	G7KWB3	58.333	72	17	2	42	100	78	149	1.67e-15	82.0
Msa1075440	G7KWB3	94.231	156	9	0	103	258	6	161	3.62e-95	285

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TFs/TRs:

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Gene ID	Type	Classification
Msa1075440	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075440	MtrunA17_Chr7g0258981	94.231	156	9	0	103	258	6	161	6.96e-99	285
Msa1075440	MtrunA17_Chr7g0258981	58.333	72	17	2	42	100	78	149	3.22e-19	82.0
Msa1075440	MtrunA17_Chr3g0080591	46.939	98	38	3	1	87	1	95	3.56e-18	78.6
Msa1075440	MtrunA17_Chr3g0080591	48.352	91	23	1	169	235	32	122	9.57e-18	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 75 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTTCGTGAAAATCG+TGG	0.643030	7_2:-73673838	None:intergenic
AAAATTGGAATCTCTGGTAT+AGG	0.429793	7_2:-73673964	None:intergenic
AACAACATAGTGTGTGATGA+AGG	0.595436	7_2:-73678465	None:intergenic
AACATAGTGTGAGATGAAGG+TGG	0.688373	7_2:-73673889	None:intergenic
AACATAGTGTGTGATGAAGG+TGG	0.727614	7_2:-73678462	None:intergenic
AAGAATTACCAGTGGTGTGG+CGG	0.548905	7_2:+73678664	Msa1075440:CDS
AAGATCTCGTGCAGTTCTGA+AGG	0.551614	7_2:-73678349	None:intergenic
AATAATATCGATGGATCTTT+GGG	0.246908	7_2:+73678585	Msa1075440:CDS
ACAATTGGAACCTCTGGTAT+AGG	0.433089	7_2:-73678540	None:intergenic
ACCACCGGTCGTTCCTCAGT+TGG	0.542730	7_2:-73674078	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGGAATCTCTGGTAT+AGG	-	chr7_2:73673967-73673986	None:intergenic	30.0%
AATTAACAACCATATCATGC+CGG	+	chr7_2:73674464-73674483	Msa1075440:intron	30.0%
TGGATGGAAAATGATGTAAT+TGG	+	chr7_2:73674773-73674792	Msa1075440:intron	30.0%
TCTCTTAACACCTAACAAAT+TGG	+	chr7_2:73674953-73674972	Msa1075440:intron	30.0%
AAAAAGTTCATTGTGAACAC+GGG	-	chr7_2:73675312-73675331	None:intergenic	30.0%
CACATATAGTTCAGTTCATT+TGG	-	chr7_2:73675751-73675770	None:intergenic	30.0%
GGGCCAATTTAAGTAAAATT+TGG	-	chr7_2:73675979-73675998	None:intergenic	30.0%
TGTACAAAGTTTCATGTAGT+AGG	-	chr7_2:73676033-73676052	None:intergenic	30.0%
ACTAGTTACAGTAGGAAATA+CGG	+	chr7_2:73676052-73676071	Msa1075440:intron	30.0%
AGTCCCCTATATATAACAAA+GGG	-	chr7_2:73676131-73676150	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	73673778	73678728	73673778	ID=Msa1075440;Name=Msa1075440
chr7_2	mRNA	73673778	73678728	73673778	ID=Msa1075440-mRNA-1;Parent=Msa1075440;Name=Msa1075440-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|0\|0\|3\|0\|258
chr7_2	exon	73673778	73673994	73673778	ID=Msa1075440-mRNA-1:exon:17160;Parent=Msa1075440-mRNA-1
chr7_2	exon	73674028	73674111	73674028	ID=Msa1075440-mRNA-1:exon:17161;Parent=Msa1075440-mRNA-1
chr7_2	exon	73678253	73678728	73678253	ID=Msa1075440-mRNA-1:exon:17162;Parent=Msa1075440-mRNA-1
chr7_2	CDS	73673778	73673994	73673778	ID=Msa1075440-mRNA-1:cds;Parent=Msa1075440-mRNA-1
chr7_2	CDS	73674028	73674111	73674028	ID=Msa1075440-mRNA-1:cds;Parent=Msa1075440-mRNA-1
chr7_2	CDS	73678253	73678728	73678253	ID=Msa1075440-mRNA-1:cds;Parent=Msa1075440-mRNA-1

Gene Sequence

>Msa1075440

ATGGTGAAAAACCAAAATGAAAACAAGACACCATTGACAACATTCATACCACCAGCAACACCACGATTTTCACGAAGAGTTTTTTCACGCCGCAATGGACCACCACTACCACCACCTTCATCTCACACTATGTTTCCCATGCATGGACGTGGTAATTATACCCGTCGTTTTCATCCATACATGAGGCCTATACCAGAGATTCCAATTTTCCCTACTCGGAGAGAATTGGATCGTCTTTCTTTGATTGACAAGCCGGCTGATCTTGCTCCAACTGAGGAACGACCGGTGGTGTGGGGTGATAATATTGAACTCCTATCTGAATCAGATGATGAGAGCAGTACTGGCAGCAGCATCATTACTAACGTTGCTCCTATTCCATGCAACCATTGCCATGAAACCTTCAGAACTGCACGAGATCTTTCTTGGCACCAAAGCACATACACAATTTGCAACATAAATCAGGCTTTATTGAGACTAAACAACACAAACCACATTGGACCACCATCTCCACCACCTTCATCACACACTATGTTGTTTCCTATGCATGGAAGCGGTAATTATAACCGCCGTTTTCATCCATACATGAGGCCTATACCAGAGGTTCCAATTGTCTCTCGTACCGATCATGATTACAATAATATCGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCGACAAGCCGATTGATTCAGCTCCAACTGAAGAATTACCAGTGGTGTGGCGGGATGGAAGCACCAATGACATCAACCTTGATTTGAAGCTCTAG

Protein sequence

>Msa1075440

MVKNQNENKTPLTTFIPPATPRFSRRVFSRRNGPPLPPPSSHTMFPMHGRGNYTRRFHPYMRPIPEIPIFPTRRELDRLSLIDKPADLAPTEERPVVWGDNIELLSESDDESSTGSSIITNVAPIPCNHCHETFRTARDLSWHQSTYTICNINQALLRLNNTNHIGPPSPPPSSHTMLFPMHGSGNYNRRFHPYMRPIPEVPIVSRTDHDYNNIDGSLGRTMDLISLIDKPIDSAPTEELPVVWRDGSTNDINLDLKL*