AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1075440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075440 MtrunA17_Chr7g0258981 94.231 156 9 0 103 258 6 161 6.96e-99 285
Msa1075440 MtrunA17_Chr7g0258981 58.333 72 17 2 42 100 78 149 3.22e-19 82.0
Msa1075440 MtrunA17_Chr3g0080591 46.939 98 38 3 1 87 1 95 3.56e-18 78.6
Msa1075440 MtrunA17_Chr3g0080591 48.352 91 23 1 169 235 32 122 9.57e-18 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATATCGATGGATCTT+TGG 0.212883 7_2:+73678584 Msa1075440:CDS
AATAATATCGATGGATCTTT+GGG 0.246908 7_2:+73678585 Msa1075440:CDS
GAACTGCACGAGATCTTTCT+TGG 0.257265 7_2:+73678355 Msa1075440:CDS
TAAAGACGAGTAGGGAAAAT+TGG 0.289389 7_2:-73673979 None:intergenic
CACAATTTGCAACATAAATC+AGG 0.352461 7_2:+73678392 Msa1075440:CDS
CGTGAAAATCGTGGTGTTGC+TGG 0.353095 7_2:-73673829 None:intergenic
CAAATCAAGGTTGATGTCAT+TGG 0.397831 7_2:-73678697 None:intergenic
GTGCAGTTCTGAAGGTTTCA+TGG 0.407889 7_2:-73678341 None:intergenic
TGCAAATTGTGTATGTGCTT+TGG 0.408651 7_2:-73678380 None:intergenic
AAAATTGGAATCTCTGGTAT+AGG 0.429793 7_2:-73673964 None:intergenic
ACAATTGGAACCTCTGGTAT+AGG 0.433089 7_2:-73678540 None:intergenic
GTAGGGAAAATTGGAATCTC+TGG 0.436918 7_2:-73673970 None:intergenic
TGGCAATGGTTGCATGGAAT+AGG 0.448209 7_2:-73678321 None:intergenic
TTCTGAAGGTTTCATGGCAA+TGG 0.457643 7_2:-73678335 None:intergenic
TCAGATGATGAGAGCAGTAC+TGG 0.465223 7_2:+73678273 Msa1075440:CDS
TCAGTTGGAGCTGAATCAAT+CGG 0.471657 7_2:-73678642 None:intergenic
CAACCTAGAGCTTCAAATCA+AGG 0.475468 7_2:-73678710 None:intergenic
TGAGATGAAGGTGGTGGTAG+TGG 0.484354 7_2:-73673880 None:intergenic
CGAGAGACAATTGGAACCTC+TGG 0.486624 7_2:-73678546 None:intergenic
TGATCGGTACGAGAGACAAT+TGG 0.489555 7_2:-73678555 None:intergenic
TCTTTCTTTGATTGACAAGC+CGG 0.490146 7_2:+73674044 Msa1075440:CDS
TCTCATCATCTGATTCAGAT+AGG 0.499444 7_2:-73678263 None:intergenic
TGAGGAACGACCGGTGGTGT+GGG 0.500328 7_2:+73674083 Msa1075440:CDS
CACACTATGTTTCCCATGCA+TGG 0.504244 7_2:+73673901 Msa1075440:CDS
CTTCCATCCCGCCACACCAC+TGG 0.504811 7_2:-73678672 None:intergenic
CTGAGGAACGACCGGTGGTG+TGG 0.509457 7_2:+73674082 Msa1075440:CDS
TGCTCCAACTGAGGAACGAC+CGG 0.510075 7_2:+73674074 Msa1075440:CDS
TCTGGTATAGGCCTCATGTA+TGG 0.510085 7_2:-73678528 None:intergenic
ACCACTGGTAATTCTTCAGT+TGG 0.510267 7_2:-73678657 None:intergenic
TCTGGTATAGGCCTCATGTA+TGG 0.510790 7_2:-73673952 None:intergenic
CAACCTTGATTTGAAGCTCT+AGG 0.512638 7_2:+73678707 Msa1075440:CDS
TGTGATGAAGGTGGTGGAGA+TGG 0.521845 7_2:-73678453 None:intergenic
TAATTACCGCTTCCATGCAT+AGG 0.528205 7_2:-73678489 None:intergenic
ACTATGTTGTTTCCTATGCA+TGG 0.528781 7_2:+73678477 Msa1075440:CDS
TTACCAGTGGTGTGGCGGGA+TGG 0.529438 7_2:+73678669 Msa1075440:CDS
TCAGTTGGAGCAAGATCAGC+CGG 0.538743 7_2:-73674063 None:intergenic
ATAATTACCACGTCCATGCA+TGG 0.540019 7_2:-73673914 None:intergenic
ACCACCGGTCGTTCCTCAGT+TGG 0.542730 7_2:-73674078 None:intergenic
GTTTCATGGCAATGGTTGCA+TGG 0.544580 7_2:-73678327 None:intergenic
CATGATTACAATAATATCGA+TGG 0.547714 7_2:+73678576 Msa1075440:CDS
AAGAATTACCAGTGGTGTGG+CGG 0.548905 7_2:+73678664 Msa1075440:CDS
GCCTCATGTATGGATGAAAA+CGG 0.550640 7_2:-73678518 None:intergenic
AAGATCTCGTGCAGTTCTGA+AGG 0.551614 7_2:-73678349 None:intergenic
TTGTTTCCTATGCATGGAAG+CGG 0.563807 7_2:+73678483 Msa1075440:CDS
TGTTATGGTAAAGACGAGTA+GGG 0.574420 7_2:-73673987 None:intergenic
ATGTTTCCCATGCATGGACG+TGG 0.575400 7_2:+73673907 Msa1075440:CDS
GGCTGATCTTGCTCCAACTG+AGG 0.575874 7_2:+73674065 Msa1075440:CDS
GATATTATTGTAATCATGAT+CGG 0.580073 7_2:-73678571 None:intergenic
TGGATCTTTGGGGAGAACAA+TGG 0.585871 7_2:+73678596 Msa1075440:CDS
GGAAACATAGTGTGAGATGA+AGG 0.586864 7_2:-73673892 None:intergenic
TAATTACCACGTCCATGCAT+GGG 0.590609 7_2:-73673913 None:intergenic
CATGTATGGATGAAAACGAC+GGG 0.590737 7_2:-73673938 None:intergenic
AACAACATAGTGTGTGATGA+AGG 0.595436 7_2:-73678465 None:intergenic
AGAATTACCAGTGGTGTGGC+GGG 0.597554 7_2:+73678665 Msa1075440:CDS
GATGAAGGTGGTGGAGATGG+TGG 0.599841 7_2:-73678450 None:intergenic
GATGAAGGTGGTGGTAGTGG+TGG 0.600039 7_2:-73673877 None:intergenic
GGTGGTATGAATGTTGTCAA+TGG 0.600830 7_2:-73673808 None:intergenic
GTGGAGATGGTGGTCCAATG+TGG 0.619599 7_2:-73678440 None:intergenic
CTAAACAACACAAACCACAT+TGG 0.622975 7_2:+73678426 Msa1075440:CDS
GTACTATCACCCCACACCAC+CGG 0.628478 7_2:-73674093 None:intergenic
GAGGAACGACCGGTGGTGTG+GGG 0.635962 7_2:+73674084 Msa1075440:CDS
AAAACTCTTCGTGAAAATCG+TGG 0.643030 7_2:-73673838 None:intergenic
CTGAAGAATTACCAGTGGTG+TGG 0.651724 7_2:+73678661 Msa1075440:CDS
GAAAATCGTGGTGTTGCTGG+TGG 0.653945 7_2:-73673826 None:intergenic
ATAGTGTGAGATGAAGGTGG+TGG 0.665632 7_2:-73673886 None:intergenic
TCATGTATGGATGAAAACGA+CGG 0.675592 7_2:-73673939 None:intergenic
GTGGTAGTGGTGGTCCATTG+CGG 0.679358 7_2:-73673867 None:intergenic
TCCAACTGAGGAACGACCGG+TGG 0.682555 7_2:+73674077 Msa1075440:CDS
ATACATGAGGCCTATACCAG+AGG 0.686494 7_2:+73678530 Msa1075440:CDS
AACATAGTGTGAGATGAAGG+TGG 0.688373 7_2:-73673889 None:intergenic
TCCAACTGAAGAATTACCAG+TGG 0.699300 7_2:+73678656 Msa1075440:CDS
ATAGTGTGTGATGAAGGTGG+TGG 0.699659 7_2:-73678459 None:intergenic
ATAATATCGATGGATCTTTG+GGG 0.708326 7_2:+73678586 Msa1075440:CDS
AACATAGTGTGTGATGAAGG+TGG 0.727614 7_2:-73678462 None:intergenic
TCATGTATGGATGAAAACGG+CGG 0.744847 7_2:-73678515 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATATATATTTTTAA+AGG + chr7_2:73676847-73676866 Msa1075440:intron 0.0%
!!! AATATATATATATTTTTAAA+GGG + chr7_2:73676848-73676867 Msa1075440:intron 0.0%
!! AAAAAAATACATCAATTTAA+AGG + chr7_2:73674722-73674741 Msa1075440:intron 10.0%
!! AAAAAATACATCAATTTAAA+GGG + chr7_2:73674723-73674742 Msa1075440:intron 10.0%
!!! TATATATATTTGCAATATTT+TGG - chr7_2:73675044-73675063 None:intergenic 10.0%
!! TTTATATATAGTATAGATAA+AGG - chr7_2:73676396-73676415 None:intergenic 10.0%
!!! ATAAAGAAAATACATATTTT+TGG + chr7_2:73676411-73676430 Msa1075440:intron 10.0%
!!! TAAAGAAAATACATATTTTT+GGG + chr7_2:73676412-73676431 Msa1075440:intron 10.0%
!!! TATATATATATATTTTGTTG+TGG + chr7_2:73676731-73676750 Msa1075440:intron 10.0%
!! TATATATATATATATATGCA+AGG - chr7_2:73676776-73676795 None:intergenic 10.0%
!!! TAAAATCATTTATTTTTTGA+CGG + chr7_2:73677773-73677792 Msa1075440:intron 10.0%
!!! ATTCAAATATATTTTTTGAA+AGG - chr7_2:73677932-73677951 None:intergenic 10.0%
!!! ATTAATTCCTATATTTTTTT+TGG + chr7_2:73678053-73678072 Msa1075440:intron 10.0%
!!! TTTTAATCCAAAAAAAATAT+AGG - chr7_2:73678063-73678082 None:intergenic 10.0%
!!! ATGGTTTTATAATTATGTAA+TGG + chr7_2:73674197-73674216 Msa1075440:intron 15.0%
!!! TGGTTTTATAATTATGTAAT+GGG + chr7_2:73674198-73674217 Msa1075440:intron 15.0%
!!! TTTTTTAATTTGTCTGATAT+CGG + chr7_2:73674282-73674301 Msa1075440:intron 15.0%
!!! ATTAATGAAATGTTTTAGTT+TGG + chr7_2:73674380-73674399 Msa1075440:intron 15.0%
!!! TTAATGAAATGTTTTAGTTT+GGG + chr7_2:73674381-73674400 Msa1075440:intron 15.0%
!! AAAGAAAATATATTAGTAGA+TGG - chr7_2:73674695-73674714 None:intergenic 15.0%
!! AAAAATACATCAATTTAAAG+GGG + chr7_2:73674724-73674743 Msa1075440:intron 15.0%
!!! TACATATTTCATTTTTTTGA+AGG + chr7_2:73674855-73674874 Msa1075440:intron 15.0%
!!! ACATATTTCATTTTTTTGAA+GGG + chr7_2:73674856-73674875 Msa1075440:intron 15.0%
!! ATCAAACATATATTGTTTAA+AGG + chr7_2:73675528-73675547 Msa1075440:intron 15.0%
!!! ATTCCAAATTTTACTTAAAT+TGG + chr7_2:73675973-73675992 Msa1075440:intron 15.0%
!!! AAAGAAAATACATATTTTTG+GGG + chr7_2:73676413-73676432 Msa1075440:intron 15.0%
!!! ATATTTTATCGAATAGAAAA+TGG + chr7_2:73676880-73676899 Msa1075440:intron 15.0%
!! AATATACTAGGAATTAATTA+GGG - chr7_2:73677185-73677204 None:intergenic 15.0%
!! AAATATACTAGGAATTAATT+AGG - chr7_2:73677186-73677205 None:intergenic 15.0%
!!! TTAATTCCTAGTATATTTTT+CGG + chr7_2:73677188-73677207 Msa1075440:intron 15.0%
!!! TTTAATTTTCAAAAAGTTAC+GGG - chr7_2:73677582-73677601 None:intergenic 15.0%
!!! GTTTAATTTTCAAAAAGTTA+CGG - chr7_2:73677583-73677602 None:intergenic 15.0%
!! TTCTATTCAAAATAAAAACT+AGG - chr7_2:73677702-73677721 None:intergenic 15.0%
!!! AAAATCATTTATTTTTTGAC+GGG + chr7_2:73677774-73677793 Msa1075440:intron 15.0%
!!! TAATTAATATCAGTTGATTT+TGG + chr7_2:73677878-73677897 Msa1075440:intron 15.0%
!! AAAATATAGGAATTAATTAG+AGG - chr7_2:73678050-73678069 None:intergenic 15.0%
!! AGATTGGAAAAAAAAAAATA+TGG - chr7_2:73678200-73678219 None:intergenic 15.0%
!! AAAATTCATCAATGTTGTTA+TGG - chr7_2:73674005-73674024 None:intergenic 20.0%
!!! AACAACATTGATGAATTTTT+AGG + chr7_2:73674006-73674025 Msa1075440:intron 20.0%
!!! ACAACATTGATGAATTTTTA+GGG + chr7_2:73674007-73674026 Msa1075440:intron 20.0%
!!! GGTTTTATAATTATGTAATG+GGG + chr7_2:73674199-73674218 Msa1075440:intron 20.0%
!!! TCATTGTTTTGATTTTCATT+AGG + chr7_2:73674258-73674277 Msa1075440:intron 20.0%
!!! CATTGTTTTGATTTTCATTA+GGG + chr7_2:73674259-73674278 Msa1075440:intron 20.0%
!! TAAATTAAACTCATTTCAAG+AGG - chr7_2:73674436-73674455 None:intergenic 20.0%
!!! CAAAAAAAAAAAAGTATCAG+AGG - chr7_2:73674509-73674528 None:intergenic 20.0%
!!! CATATTTCATTTTTTTGAAG+GGG + chr7_2:73674857-73674876 Msa1075440:intron 20.0%
!!! TTTAACATAACCAATTTGTT+AGG - chr7_2:73674966-73674985 None:intergenic 20.0%
!!! CATATATCACCATTTTTTTA+GGG + chr7_2:73676086-73676105 Msa1075440:intron 20.0%
!!! ATATATCACCATTTTTTTAG+GGG + chr7_2:73676087-73676106 Msa1075440:intron 20.0%
!! TATTCGATAAAATATATGCA+AGG - chr7_2:73676875-73676894 None:intergenic 20.0%
!! TTGAATATATGTAAGTGTAA+TGG - chr7_2:73677053-73677072 None:intergenic 20.0%
!! GGAATTAAGAAAAATATACT+AGG - chr7_2:73677197-73677216 None:intergenic 20.0%
!! TTTAAACCGAAAAATATACT+AGG - chr7_2:73677218-73677237 None:intergenic 20.0%
!!! ATATCCCTTTTTATATGATT+GGG - chr7_2:73677270-73677289 None:intergenic 20.0%
!!! AATATCCCTTTTTATATGAT+TGG - chr7_2:73677271-73677290 None:intergenic 20.0%
!! TTTGGACAAAAAATATTGTT+GGG - chr7_2:73677639-73677658 None:intergenic 20.0%
!! AATAGAAAATACCAATTTGT+AGG + chr7_2:73677715-73677734 Msa1075440:intron 20.0%
!! GATATTATTGTAATCATGAT+CGG - chr7_2:73678574-73678593 None:intergenic 20.0%
! AAAAACTAATCAAAAGACAG+AGG - chr7_2:73674318-73674337 None:intergenic 25.0%
!!! TTTGTTTTTATCTAGTTGTC+CGG + chr7_2:73674533-73674552 Msa1075440:intron 25.0%
! TATTAGTAGATGGAAGTAAA+AGG - chr7_2:73674685-73674704 None:intergenic 25.0%
! TAAAAAGTTCATTGTGAACA+CGG - chr7_2:73675313-73675332 None:intergenic 25.0%
! TAAATATAGTTCAACTCGTT+TGG - chr7_2:73675861-73675880 None:intergenic 25.0%
! AAAAAATGGTGATATATGGT+TGG - chr7_2:73676084-73676103 None:intergenic 25.0%
! CCTAAAAAAATGGTGATATA+TGG - chr7_2:73676088-73676107 None:intergenic 25.0%
!!! CCATATATCACCATTTTTTT+AGG + chr7_2:73676085-73676104 Msa1075440:intron 25.0%
!! TATGTCCCTTTGTTATATAT+AGG + chr7_2:73676123-73676142 Msa1075440:intron 25.0%
!! ATGTCCCTTTGTTATATATA+GGG + chr7_2:73676124-73676143 Msa1075440:intron 25.0%
!! GGTTAGAAATTCTCTTTTTA+AGG + chr7_2:73676231-73676250 Msa1075440:intron 25.0%
!!! TCTTTTTAAGGAGAATAAGT+GGG + chr7_2:73676243-73676262 Msa1075440:intron 25.0%
! AAAGCTCGAGAAAATTAATA+TGG - chr7_2:73676350-73676369 None:intergenic 25.0%
! CTTATTGACACATTTGTTTA+AGG - chr7_2:73676463-73676482 None:intergenic 25.0%
! TTAAAAATGACCAATCATGA+TGG - chr7_2:73677381-73677400 None:intergenic 25.0%
! CATAATTGTAAGATAACTGA+TGG - chr7_2:73677614-73677633 None:intergenic 25.0%
! CATCAGTTATCTTACAATTA+TGG + chr7_2:73677612-73677631 Msa1075440:intron 25.0%
! CTTTGGACAAAAAATATTGT+TGG - chr7_2:73677640-73677659 None:intergenic 25.0%
!!! ATATTTTTTGTCCAAAGCAA+TGG + chr7_2:73677643-73677662 Msa1075440:intron 25.0%
! TCCTCAAAATTAGTCATTTA+GGG + chr7_2:73677675-73677694 Msa1075440:intron 25.0%
! TATTTATAGAGGATGTTTCA+AGG - chr7_2:73678118-73678137 None:intergenic 25.0%
! CATGATTACAATAATATCGA+TGG + chr7_2:73678576-73678595 Msa1075440:CDS 25.0%
! AATAATATCGATGGATCTTT+GGG + chr7_2:73678585-73678604 Msa1075440:CDS 25.0%
!!! ATGGTGTCTTGTTTTCATTT+TGG - chr7_2:73673792-73673811 None:intergenic 30.0%
AAAATTGGAATCTCTGGTAT+AGG - chr7_2:73673967-73673986 None:intergenic 30.0%
!! TGAATTTTTAGGGAGAGAAT+TGG + chr7_2:73674017-73674036 Msa1075440:intron 30.0%
! GTCTAGATTTTCAATGTTTG+TGG + chr7_2:73674343-73674362 Msa1075440:intron 30.0%
AATTAACAACCATATCATGC+CGG + chr7_2:73674464-73674483 Msa1075440:intron 30.0%
!! TGGCTAGAATTCACTTTTAA+GGG + chr7_2:73674556-73674575 Msa1075440:intron 30.0%
! GGGGACAATATTTTCTTTTA+CGG + chr7_2:73674743-73674762 Msa1075440:intron 30.0%
TGGATGGAAAATGATGTAAT+TGG + chr7_2:73674773-73674792 Msa1075440:intron 30.0%
TCTCTTAACACCTAACAAAT+TGG + chr7_2:73674953-73674972 Msa1075440:intron 30.0%
AAAAAGTTCATTGTGAACAC+GGG - chr7_2:73675312-73675331 None:intergenic 30.0%
! CTTAGTTTGACTCGTTAATT+AGG + chr7_2:73675371-73675390 Msa1075440:intron 30.0%
CACATATAGTTCAGTTCATT+TGG - chr7_2:73675751-73675770 None:intergenic 30.0%
GGGCCAATTTAAGTAAAATT+TGG - chr7_2:73675979-73675998 None:intergenic 30.0%
TGTACAAAGTTTCATGTAGT+AGG - chr7_2:73676033-73676052 None:intergenic 30.0%
ACTAGTTACAGTAGGAAATA+CGG + chr7_2:73676052-73676071 Msa1075440:intron 30.0%
! TGTCCCTTTGTTATATATAG+GGG + chr7_2:73676125-73676144 Msa1075440:intron 30.0%
AGTCCCCTATATATAACAAA+GGG - chr7_2:73676131-73676150 None:intergenic 30.0%
AAGTCCCCTATATATAACAA+AGG - chr7_2:73676132-73676151 None:intergenic 30.0%
! TCTCATGATTTTGTTACGTA+AGG + chr7_2:73676154-73676173 Msa1075440:intron 30.0%
! CTCATGATTTTGTTACGTAA+GGG + chr7_2:73676155-73676174 Msa1075440:intron 30.0%
! TATTTTGTCAAGTAGTCTAG+TGG + chr7_2:73676210-73676229 Msa1075440:intron 30.0%
!! CTCTTTTTAAGGAGAATAAG+TGG + chr7_2:73676242-73676261 Msa1075440:intron 30.0%
!! CTTTTTAAGGAGAATAAGTG+GGG + chr7_2:73676244-73676263 Msa1075440:intron 30.0%
CTCGAGAAAATTAATATGGT+TGG - chr7_2:73676346-73676365 None:intergenic 30.0%
!!! GAAAATACATATTTTTGGGG+TGG + chr7_2:73676416-73676435 Msa1075440:intron 30.0%
ATATATATATGCAAGGTCTG+AGG - chr7_2:73676769-73676788 None:intergenic 30.0%
TGCATAATATACGCAAAGTT+CGG + chr7_2:73677125-73677144 Msa1075440:intron 30.0%
!!! TTAGGGATGACTTTTTTTGT+TGG - chr7_2:73677168-73677187 None:intergenic 30.0%
CATGCCCAATCATATAAAAA+GGG + chr7_2:73677263-73677282 Msa1075440:intron 30.0%
GACAAAAAAATCCATTGCTT+TGG - chr7_2:73677657-73677676 None:intergenic 30.0%
GTCCTCAAAATTAGTCATTT+AGG + chr7_2:73677674-73677693 Msa1075440:intron 30.0%
! ACCCTAAATGACTAATTTTG+AGG - chr7_2:73677679-73677698 None:intergenic 30.0%
CGAATATTAGACCTACAAAT+TGG - chr7_2:73677729-73677748 None:intergenic 30.0%
TGACGGGAAAAAGTTATTAT+TGG + chr7_2:73677790-73677809 Msa1075440:intron 30.0%
GAAGTAGGATGTATTTATAG+AGG - chr7_2:73678129-73678148 None:intergenic 30.0%
AAATACATCCTACTTCTCAA+AGG + chr7_2:73678133-73678152 Msa1075440:intron 30.0%
CACAATTTGCAACATAAATC+AGG + chr7_2:73678392-73678411 Msa1075440:CDS 30.0%
CAATAATATCGATGGATCTT+TGG + chr7_2:73678584-73678603 Msa1075440:CDS 30.0%
ATAATATCGATGGATCTTTG+GGG + chr7_2:73678586-73678605 Msa1075440:CDS 30.0%
AAAACTCTTCGTGAAAATCG+TGG - chr7_2:73673841-73673860 None:intergenic 35.0%
TCATGTATGGATGAAAACGA+CGG - chr7_2:73673942-73673961 None:intergenic 35.0%
TAAAGACGAGTAGGGAAAAT+TGG - chr7_2:73673982-73674001 None:intergenic 35.0%
TGTTATGGTAAAGACGAGTA+GGG - chr7_2:73673990-73674009 None:intergenic 35.0%
TTGTTATGGTAAAGACGAGT+AGG - chr7_2:73673991-73674010 None:intergenic 35.0%
TCTTTCTTTGATTGACAAGC+CGG + chr7_2:73674044-73674063 Msa1075440:CDS 35.0%
! GGTGATAGTACGTTTGAAAT+AGG + chr7_2:73674105-73674124 Msa1075440:intron 35.0%
TAAAAGTGAATTCTAGCCAC+CGG - chr7_2:73674555-73674574 None:intergenic 35.0%
!! GTGGCTAGAATTCACTTTTA+AGG + chr7_2:73674555-73674574 Msa1075440:intron 35.0%
!! GGCTAGAATTCACTTTTAAG+GGG + chr7_2:73674557-73674576 Msa1075440:intron 35.0%
!! TCACTTTTAAGGGGAATAAG+AGG + chr7_2:73674566-73674585 Msa1075440:intron 35.0%
CATTGCATTGTTATATGCAG+AGG - chr7_2:73674613-73674632 None:intergenic 35.0%
! CATCATTTTCCATCCAGAAA+CGG - chr7_2:73674769-73674788 None:intergenic 35.0%
TTAGGTGTTAAGAGATGTTG+GGG - chr7_2:73674948-73674967 None:intergenic 35.0%
GTTAGGTGTTAAGAGATGTT+GGG - chr7_2:73674949-73674968 None:intergenic 35.0%
TGTTAGGTGTTAAGAGATGT+TGG - chr7_2:73674950-73674969 None:intergenic 35.0%
!! ACAGTTAGATTGCTTTTCTG+TGG + chr7_2:73675214-73675233 Msa1075440:intron 35.0%
! TTTTCAACTGAACCAAATCG+AGG - chr7_2:73675284-73675303 None:intergenic 35.0%
! TAGTTCAAGTTTAGCTCACT+TGG + chr7_2:73675879-73675898 Msa1075440:intron 35.0%
TCGACTCAATGATTACGTTT+AGG - chr7_2:73675953-73675972 None:intergenic 35.0%
!! ACAAGGGTTGGTAATAAACT+GGG - chr7_2:73675999-73676018 None:intergenic 35.0%
CTTTGTACACTAGTTACAGT+AGG + chr7_2:73676044-73676063 Msa1075440:intron 35.0%
CTAGTTACAGTAGGAAATAC+GGG + chr7_2:73676053-73676072 Msa1075440:intron 35.0%
AATGGTGATATATGGTTGGA+TGG - chr7_2:73676080-73676099 None:intergenic 35.0%
GAGATATGCCCCTAAAAAAA+TGG - chr7_2:73676098-73676117 None:intergenic 35.0%
GCATAATATACGCAAAGTTC+GGG + chr7_2:73677126-73677145 Msa1075440:intron 35.0%
!!! TGACTTTTTTTGTTGGTGTC+CGG - chr7_2:73677161-73677180 None:intergenic 35.0%
TATATGATTGGGCATGGTAT+TGG - chr7_2:73677259-73677278 None:intergenic 35.0%
! CCTTTTTATATGATTGGGCA+TGG - chr7_2:73677265-73677284 None:intergenic 35.0%
CCATGCCCAATCATATAAAA+AGG + chr7_2:73677262-73677281 Msa1075440:intron 35.0%
ATAGAGGATGTTTCAAGGTA+GGG - chr7_2:73678113-73678132 None:intergenic 35.0%
TATAGAGGATGTTTCAAGGT+AGG - chr7_2:73678114-73678133 None:intergenic 35.0%
!!! GAGGGAATTGGTTTTTAGAT+TGG - chr7_2:73678216-73678235 None:intergenic 35.0%
TCTCATCATCTGATTCAGAT+AGG - chr7_2:73678266-73678285 None:intergenic 35.0%
TGCAAATTGTGTATGTGCTT+TGG - chr7_2:73678383-73678402 None:intergenic 35.0%
CTAAACAACACAAACCACAT+TGG + chr7_2:73678426-73678445 Msa1075440:CDS 35.0%
AACAACATAGTGTGTGATGA+AGG - chr7_2:73678468-73678487 None:intergenic 35.0%
!! ACTATGTTGTTTCCTATGCA+TGG + chr7_2:73678477-73678496 Msa1075440:CDS 35.0%
!! CAAATCAAGGTTGATGTCAT+TGG - chr7_2:73678700-73678719 None:intergenic 35.0%
GGTGGTATGAATGTTGTCAA+TGG - chr7_2:73673811-73673830 None:intergenic 40.0%
AACATAGTGTGAGATGAAGG+TGG - chr7_2:73673892-73673911 None:intergenic 40.0%
GGAAACATAGTGTGAGATGA+AGG - chr7_2:73673895-73673914 None:intergenic 40.0%
TAATTACCACGTCCATGCAT+GGG - chr7_2:73673916-73673935 None:intergenic 40.0%
ATAATTACCACGTCCATGCA+TGG - chr7_2:73673917-73673936 None:intergenic 40.0%
CATGTATGGATGAAAACGAC+GGG - chr7_2:73673941-73673960 None:intergenic 40.0%
!! GTCGTTTTCATCCATACATG+AGG + chr7_2:73673941-73673960 Msa1075440:CDS 40.0%
GTAGGGAAAATTGGAATCTC+TGG - chr7_2:73673973-73673992 None:intergenic 40.0%
!! TTTGTTGTTGTTGCTGTTGC+TGG - chr7_2:73674136-73674155 None:intergenic 40.0%
! CGACAATGATTTGAAGCTCT+AGG + chr7_2:73674167-73674186 Msa1075440:intron 40.0%
!! TGAAGCTCTAGGTTGATCTA+TGG + chr7_2:73674178-73674197 Msa1075440:intron 40.0%
TCTGATTGAAAACCTCAGAC+CGG - chr7_2:73674486-73674505 None:intergenic 40.0%
! GTTTTTATCTAGTTGTCCGG+TGG + chr7_2:73674536-73674555 Msa1075440:intron 40.0%
!! TAAGGGGAATAAGAGGTGTT+TGG + chr7_2:73674573-73674592 Msa1075440:intron 40.0%
!! AAGGGGAATAAGAGGTGTTT+GGG + chr7_2:73674574-73674593 Msa1075440:intron 40.0%
! TTTTCTTTTACGGCCGTTTC+TGG + chr7_2:73674753-73674772 Msa1075440:intron 40.0%
GGGGCTTACTTTGAATTTGT+AGG - chr7_2:73674929-73674948 None:intergenic 40.0%
GGTCGATAGTACTAGAAATG+AGG + chr7_2:73675235-73675254 Msa1075440:intron 40.0%
! CGTGTGAACATTAAGAGTGT+CGG - chr7_2:73675348-73675367 None:intergenic 40.0%
TGCGTGAATGATTACACACA+CGG - chr7_2:73675684-73675703 None:intergenic 40.0%
!! CACAAGGGTTGGTAATAAAC+TGG - chr7_2:73676000-73676019 None:intergenic 40.0%
CAGTTTATTACCAACCCTTG+TGG + chr7_2:73675998-73676017 Msa1075440:intron 40.0%
TATTACCAACCCTTGTGGTT+AGG + chr7_2:73676003-73676022 Msa1075440:intron 40.0%
TGTTACGTAAGGGACTTCTA+TGG + chr7_2:73676165-73676184 Msa1075440:intron 40.0%
GTTACGTAAGGGACTTCTAT+GGG + chr7_2:73676166-73676185 Msa1075440:intron 40.0%
!!! ACTTTTTTTGTTGGTGTCCG+GGG - chr7_2:73677159-73677178 None:intergenic 40.0%
!!! GACTTTTTTTGTTGGTGTCC+GGG - chr7_2:73677160-73677179 None:intergenic 40.0%
! TCATGATGGTGAGATATGGT+TGG - chr7_2:73677367-73677386 None:intergenic 40.0%
! CCAATCATGATGGTGAGATA+TGG - chr7_2:73677371-73677390 None:intergenic 40.0%
CCATATCTCACCATCATGAT+TGG + chr7_2:73677368-73677387 Msa1075440:intron 40.0%
TTGAATGCACGTACGTGTAA+TGG - chr7_2:73678018-73678037 None:intergenic 40.0%
! TTCAAGGTAGGGCATGATTT+TGG - chr7_2:73678102-73678121 None:intergenic 40.0%
AGAAGCTAGAGAAATGTGGT+GGG - chr7_2:73678161-73678180 None:intergenic 40.0%
AAGAAGCTAGAGAAATGTGG+TGG - chr7_2:73678162-73678181 None:intergenic 40.0%
TGCAAGAAGCTAGAGAAATG+TGG - chr7_2:73678165-73678184 None:intergenic 40.0%
ACCAATTCCCTCACTGAAAA+TGG + chr7_2:73678224-73678243 Msa1075440:intron 40.0%
! TCCATTTTCAGTGAGGGAAT+TGG - chr7_2:73678228-73678247 None:intergenic 40.0%
! TCTGACTCCATTTTCAGTGA+GGG - chr7_2:73678234-73678253 None:intergenic 40.0%
! ATCTGACTCCATTTTCAGTG+AGG - chr7_2:73678235-73678254 None:intergenic 40.0%
! TTCTGAAGGTTTCATGGCAA+TGG - chr7_2:73678338-73678357 None:intergenic 40.0%
AACATAGTGTGTGATGAAGG+TGG - chr7_2:73678465-73678484 None:intergenic 40.0%
TTGTTTCCTATGCATGGAAG+CGG + chr7_2:73678483-73678502 Msa1075440:CDS 40.0%
TAATTACCGCTTCCATGCAT+AGG - chr7_2:73678492-73678511 None:intergenic 40.0%
TCATGTATGGATGAAAACGG+CGG - chr7_2:73678518-73678537 None:intergenic 40.0%
GCCTCATGTATGGATGAAAA+CGG - chr7_2:73673945-73673964 None:intergenic 40.0%
ACAATTGGAACCTCTGGTAT+AGG - chr7_2:73678543-73678562 None:intergenic 40.0%
TCAGTTGGAGCTGAATCAAT+CGG - chr7_2:73678645-73678664 None:intergenic 40.0%
TCCAACTGAAGAATTACCAG+TGG + chr7_2:73678656-73678675 Msa1075440:CDS 40.0%
ACCACTGGTAATTCTTCAGT+TGG - chr7_2:73678660-73678679 None:intergenic 40.0%
!!! AGAGTTTTTTCACGCCGCAA+TGG + chr7_2:73673853-73673872 Msa1075440:CDS 45.0%
ATAGTGTGAGATGAAGGTGG+TGG - chr7_2:73673889-73673908 None:intergenic 45.0%
CACACTATGTTTCCCATGCA+TGG + chr7_2:73673901-73673920 Msa1075440:CDS 45.0%
TCTGGTATAGGCCTCATGTA+TGG - chr7_2:73673955-73673974 None:intergenic 45.0%
ATTGTTATATGCAGAGGCCG+GGG - chr7_2:73674607-73674626 None:intergenic 45.0%
CATTGTTATATGCAGAGGCC+GGG - chr7_2:73674608-73674627 None:intergenic 45.0%
GCATTGTTATATGCAGAGGC+CGG - chr7_2:73674609-73674628 None:intergenic 45.0%
TGAGCATATCTCAGTTGGCA+GGG - chr7_2:73674638-73674657 None:intergenic 45.0%
TGCCAACTGAGATATGCTCA+CGG + chr7_2:73674638-73674657 Msa1075440:intron 45.0%
TGCATATCCAACCATCCAAC+TGG + chr7_2:73675102-73675121 Msa1075440:intron 45.0%
GTTACTACGTGGAATCCAGT+TGG - chr7_2:73675120-73675139 None:intergenic 45.0%
ACGTTAACGCAGTTACTACG+TGG - chr7_2:73675131-73675150 None:intergenic 45.0%
GAACTCGTCTAACCTCGATT+TGG + chr7_2:73675269-73675288 Msa1075440:intron 45.0%
TGTAATCATTCACGCACTCG+TGG + chr7_2:73675688-73675707 Msa1075440:intron 45.0%
GTAATCATTCACGCACTCGT+GGG + chr7_2:73675689-73675708 Msa1075440:intron 45.0%
! AAGGTCTGAGGTTCAAACTC+AGG - chr7_2:73676757-73676776 None:intergenic 45.0%
TAAGCTCACGGGGACAATTA+GGG - chr7_2:73677086-73677105 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+CGG - chr7_2:73676289-73676308 None:intergenic 45.0%
TCAGATGATGAGAGCAGTAC+TGG + chr7_2:73678273-73678292 Msa1075440:CDS 45.0%
TGGCAATGGTTGCATGGAAT+AGG - chr7_2:73678324-73678343 None:intergenic 45.0%
GTTTCATGGCAATGGTTGCA+TGG - chr7_2:73678330-73678349 None:intergenic 45.0%
!! GTGCAGTTCTGAAGGTTTCA+TGG - chr7_2:73678344-73678363 None:intergenic 45.0%
! AAGATCTCGTGCAGTTCTGA+AGG - chr7_2:73678352-73678371 None:intergenic 45.0%
GAACTGCACGAGATCTTTCT+TGG + chr7_2:73678355-73678374 Msa1075440:CDS 45.0%
ATAGTGTGTGATGAAGGTGG+TGG - chr7_2:73678462-73678481 None:intergenic 45.0%
!! GCCGTTTTCATCCATACATG+AGG + chr7_2:73678517-73678536 Msa1075440:CDS 45.0%
TCTGGTATAGGCCTCATGTA+TGG - chr7_2:73673955-73673974 None:intergenic 45.0%
ATACATGAGGCCTATACCAG+AGG + chr7_2:73673954-73673973 Msa1075440:CDS 45.0%
TGATCGGTACGAGAGACAAT+TGG - chr7_2:73678558-73678577 None:intergenic 45.0%
! TGGATCTTTGGGGAGAACAA+TGG + chr7_2:73678596-73678615 Msa1075440:CDS 45.0%
CTGAAGAATTACCAGTGGTG+TGG + chr7_2:73678661-73678680 Msa1075440:CDS 45.0%
AAGAATTACCAGTGGTGTGG+CGG + chr7_2:73678664-73678683 Msa1075440:CDS 45.0%
!! AAAAAATTTATTTATCAAAA+AGG + chr7_2:73675430-73675449 Msa1075440:intron 5.0%
!!! ATTTAATTTTTCTTTTAAAA+AGG + chr7_2:73675478-73675497 Msa1075440:intron 5.0%
!!! TTTATATTTATTTTTTTCAA+TGG - chr7_2:73676552-73676571 None:intergenic 5.0%
!!! AAAAATAAATTTTTTTTACA+AGG - chr7_2:73676813-73676832 None:intergenic 5.0%
!!! TATATATATTTTTTTTTACA+AGG - chr7_2:73676838-73676857 None:intergenic 5.0%
!! ATTATTATTAAAATTAACTA+TGG - chr7_2:73676978-73676997 None:intergenic 5.0%
!! GAAAATCGTGGTGTTGCTGG+TGG - chr7_2:73673829-73673848 None:intergenic 50.0%
!! CGTGAAAATCGTGGTGTTGC+TGG - chr7_2:73673832-73673851 None:intergenic 50.0%
! TGAGATGAAGGTGGTGGTAG+TGG - chr7_2:73673883-73673902 None:intergenic 50.0%
ATGTTTCCCATGCATGGACG+TGG + chr7_2:73673907-73673926 Msa1075440:CDS 50.0%
TCAGTTGGAGCAAGATCAGC+CGG - chr7_2:73674066-73674085 None:intergenic 50.0%
AACCATATCATGCCGGTCTG+AGG + chr7_2:73674471-73674490 Msa1075440:intron 50.0%
AACCTCAGACCGGCATGATA+TGG - chr7_2:73674476-73674495 None:intergenic 50.0%
GTGAGCATATCTCAGTTGGC+AGG - chr7_2:73674639-73674658 None:intergenic 50.0%
GCCAACTGAGATATGCTCAC+GGG + chr7_2:73674639-73674658 Msa1075440:intron 50.0%
TCCCGTGAGCATATCTCAGT+TGG - chr7_2:73674643-73674662 None:intergenic 50.0%
!! CTTTTACGGCCGTTTCTGGA+TGG + chr7_2:73674757-73674776 Msa1075440:intron 50.0%
GTGGAATCCAGTTGGATGGT+TGG - chr7_2:73675112-73675131 None:intergenic 50.0%
CTACGTGGAATCCAGTTGGA+TGG - chr7_2:73675116-73675135 None:intergenic 50.0%
CAGCTCAAGTGCAGCTCATT+TGG + chr7_2:73675919-73675938 Msa1075440:intron 50.0%
GTAGGCGATCCTAACCACAA+GGG - chr7_2:73676015-73676034 None:intergenic 50.0%
AGTAGGCGATCCTAACCACA+AGG - chr7_2:73676016-73676035 None:intergenic 50.0%
CGTAAGGGACTTCTATGGGA+TGG + chr7_2:73676170-73676189 Msa1075440:intron 50.0%
AGGAGAATAAGTGGGGTCTC+AGG + chr7_2:73676251-73676270 Msa1075440:intron 50.0%
GGAGAATAAGTGGGGTCTCA+GGG + chr7_2:73676252-73676271 Msa1075440:intron 50.0%
GAGAATAAGTGGGGTCTCAG+GGG + chr7_2:73676253-73676272 Msa1075440:intron 50.0%
TCTCGTGAGCTTAGCTCAGT+TGG - chr7_2:73676294-73676313 None:intergenic 50.0%
AAGCTCACGGGGACAATTAG+GGG - chr7_2:73677085-73677104 None:intergenic 50.0%
CTAAGCTCACGGGGACAATT+AGG - chr7_2:73677087-73677106 None:intergenic 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - chr7_2:73676290-73676309 None:intergenic 50.0%
AAAGTTCGGGATTCGAACCC+CGG + chr7_2:73677139-73677158 Msa1075440:intron 50.0%
! GGTGGGTACCTTTGAGAAGT+AGG - chr7_2:73678144-73678163 None:intergenic 50.0%
!! TGTGATGAAGGTGGTGGAGA+TGG - chr7_2:73678456-73678475 None:intergenic 50.0%
CGAGAGACAATTGGAACCTC+TGG - chr7_2:73678549-73678568 None:intergenic 50.0%
AGAATTACCAGTGGTGTGGC+GGG + chr7_2:73678665-73678684 Msa1075440:CDS 50.0%
!! GTGGTAGTGGTGGTCCATTG+CGG - chr7_2:73673870-73673889 None:intergenic 55.0%
!! GATGAAGGTGGTGGTAGTGG+TGG - chr7_2:73673880-73673899 None:intergenic 55.0%
GGCTGATCTTGCTCCAACTG+AGG + chr7_2:73674065-73674084 Msa1075440:CDS 55.0%
TGCTCCAACTGAGGAACGAC+CGG + chr7_2:73674074-73674093 Msa1075440:CDS 55.0%
GTACTATCACCCCACACCAC+CGG - chr7_2:73674096-73674115 None:intergenic 55.0%
! GGTGTTTGGGATTCGAACCC+CGG + chr7_2:73674587-73674606 Msa1075440:intron 55.0%
GCGATCCTAACCACAAGGGT+TGG - chr7_2:73676011-73676030 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+GGG - chr7_2:73676291-73676310 None:intergenic 55.0%
! GTGGAGATGGTGGTCCAATG+TGG - chr7_2:73678443-73678462 None:intergenic 55.0%
!! GATGAAGGTGGTGGAGATGG+TGG - chr7_2:73678453-73678472 None:intergenic 55.0%
TCCAACTGAGGAACGACCGG+TGG + chr7_2:73674077-73674096 Msa1075440:CDS 60.0%
ACCACCGGTCGTTCCTCAGT+TGG - chr7_2:73674081-73674100 None:intergenic 60.0%
TGAGGAACGACCGGTGGTGT+GGG + chr7_2:73674083-73674102 Msa1075440:CDS 60.0%
CCCCGTGAGCTTAGCTCAGT+TGG + chr7_2:73677093-73677112 Msa1075440:intron 60.0%
! TTACCAGTGGTGTGGCGGGA+TGG + chr7_2:73678669-73678688 Msa1075440:CDS 60.0%
CTGAGGAACGACCGGTGGTG+TGG + chr7_2:73674082-73674101 Msa1075440:CDS 65.0%
GAGGAACGACCGGTGGTGTG+GGG + chr7_2:73674084-73674103 Msa1075440:CDS 65.0%
CTTCCATCCCGCCACACCAC+TGG - chr7_2:73678675-73678694 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 73673778 73678728 73673778 ID=Msa1075440;Name=Msa1075440
chr7_2 mRNA 73673778 73678728 73673778 ID=Msa1075440-mRNA-1;Parent=Msa1075440;Name=Msa1075440-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|0|0|3|0|258
chr7_2 exon 73673778 73673994 73673778 ID=Msa1075440-mRNA-1:exon:17160;Parent=Msa1075440-mRNA-1
chr7_2 exon 73674028 73674111 73674028 ID=Msa1075440-mRNA-1:exon:17161;Parent=Msa1075440-mRNA-1
chr7_2 exon 73678253 73678728 73678253 ID=Msa1075440-mRNA-1:exon:17162;Parent=Msa1075440-mRNA-1
chr7_2 CDS 73673778 73673994 73673778 ID=Msa1075440-mRNA-1:cds;Parent=Msa1075440-mRNA-1
chr7_2 CDS 73674028 73674111 73674028 ID=Msa1075440-mRNA-1:cds;Parent=Msa1075440-mRNA-1
chr7_2 CDS 73678253 73678728 73678253 ID=Msa1075440-mRNA-1:cds;Parent=Msa1075440-mRNA-1
Gene Sequence

>Msa1075440

ATGGTGAAAAACCAAAATGAAAACAAGACACCATTGACAACATTCATACCACCAGCAACACCACGATTTTCACGAAGAGTTTTTTCACGCCGCAATGGACCACCACTACCACCACCTTCATCTCACACTATGTTTCCCATGCATGGACGTGGTAATTATACCCGTCGTTTTCATCCATACATGAGGCCTATACCAGAGATTCCAATTTTCCCTACTCGGAGAGAATTGGATCGTCTTTCTTTGATTGACAAGCCGGCTGATCTTGCTCCAACTGAGGAACGACCGGTGGTGTGGGGTGATAATATTGAACTCCTATCTGAATCAGATGATGAGAGCAGTACTGGCAGCAGCATCATTACTAACGTTGCTCCTATTCCATGCAACCATTGCCATGAAACCTTCAGAACTGCACGAGATCTTTCTTGGCACCAAAGCACATACACAATTTGCAACATAAATCAGGCTTTATTGAGACTAAACAACACAAACCACATTGGACCACCATCTCCACCACCTTCATCACACACTATGTTGTTTCCTATGCATGGAAGCGGTAATTATAACCGCCGTTTTCATCCATACATGAGGCCTATACCAGAGGTTCCAATTGTCTCTCGTACCGATCATGATTACAATAATATCGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCGACAAGCCGATTGATTCAGCTCCAACTGAAGAATTACCAGTGGTGTGGCGGGATGGAAGCACCAATGACATCAACCTTGATTTGAAGCTCTAG

Protein sequence

>Msa1075440

MVKNQNENKTPLTTFIPPATPRFSRRVFSRRNGPPLPPPSSHTMFPMHGRGNYTRRFHPYMRPIPEIPIFPTRRELDRLSLIDKPADLAPTEERPVVWGDNIELLSESDDESSTGSSIITNVAPIPCNHCHETFRTARDLSWHQSTYTICNINQALLRLNNTNHIGPPSPPPSSHTMLFPMHGSGNYNRRFHPYMRPIPEVPIVSRTDHDYNNIDGSLGRTMDLISLIDKPIDSAPTEELPVVWRDGSTNDINLDLKL*