AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077790 MtrunA17_Chr7g0262311 91.636 275 22 1 1 275 1 274 0.0 520
Msa1077790 MtrunA17_Chr5g0395781 50.352 284 115 7 1 275 1 267 8.59e-84 257
Msa1077790 MtrunA17_Chr5g0395751 57.940 233 64 4 16 234 6 218 9.18e-70 219
Msa1077790 MtrunA17_Chr5g0395741 53.365 208 74 4 71 275 118 305 1.94e-54 182
Msa1077790 MtrunA17_Chr3g0097201 58.857 175 57 2 102 275 1 161 1.16e-52 173
Msa1077790 MtrunA17_Chr3g0097211 67.816 87 25 1 6 89 2 88 6.52e-30 113
Msa1077790 MtrunA17_Chr4g0033741 38.095 189 90 7 35 222 10 172 1.66e-23 96.3
Msa1077790 MtrunA17_Chr5g0444241 37.584 149 88 3 129 272 186 334 4.04e-23 99.4
Msa1077790 MtrunA17_Chr7g0262351 46.667 120 59 3 279 398 22 136 1.27e-22 92.8
Msa1077790 MtrunA17_Chr8g0364781 44.554 101 53 2 279 377 12 111 7.40e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077790 AT5G26594.1 38.333 120 70 2 279 398 18 133 1.82e-16 76.3
Msa1077790 AT3G04280.1 40.000 110 62 2 268 376 14 120 2.08e-13 67.8
Msa1077790 AT3G04280.2 40.000 110 62 2 268 376 14 120 2.08e-13 67.8
Msa1077790 AT3G04280.3 40.000 110 62 2 268 376 14 120 2.08e-13 67.8
Msa1077790 AT3G24850.1 30.556 180 102 6 115 285 183 348 2.85e-13 70.9
Msa1077790 AT2G31720.1 32.099 162 104 3 156 314 137 295 7.29e-13 69.3
Msa1077790 AT1G05920.1 31.746 126 78 4 156 273 171 296 1.56e-11 65.5

Find 82 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCAACATTTGGTCATTT+AGG 0.092697 7_2:-76612746 Msa1077790:CDS
TTTACAGTCTTATACAAAAT+TGG 0.190742 7_2:-76612809 Msa1077790:CDS
GTGGCATTAAAAGACGATTT+TGG 0.230260 7_2:+76612994 None:intergenic
AGTGGAGAATGACTGATAAA+TGG 0.236879 7_2:-76612833 Msa1077790:CDS
TCCACCTTCTTCGTGGTCTT+TGG 0.253725 7_2:+76613203 None:intergenic
ACTCAACATTTGGTCATTTA+GGG 0.255771 7_2:-76612745 Msa1077790:CDS
TCCACCTTCCTCGTGGTCTT+TGG 0.286800 7_2:+76613161 None:intergenic
ATCTTGTTCTTGACGTTAAT+AGG 0.296823 7_2:+76613089 None:intergenic
ATTGTGAAGCTTCTAAAATA+AGG 0.305880 7_2:+76612867 None:intergenic
TTGACGTTAATAGGTAATAT+TGG 0.347766 7_2:+76613098 None:intergenic
CCAAGTTCGTCTTCTTTAAG+TGG 0.388473 7_2:+76612975 None:intergenic
CGCATTGCCAAGCAAAGTTA+TGG 0.391834 7_2:+76613417 None:intergenic
GCCCGTCATGGATGGAATTA+CGG 0.406314 7_2:-76609910 Msa1077790:intron
CTGCATATTCATCATTAGTA+AGG 0.410681 7_2:+76609606 None:intergenic
GTGGAGAATGACTGATAAAT+GGG 0.417628 7_2:-76612832 Msa1077790:CDS
ACCTTCTCCATAACTTTGCT+TGG 0.420476 7_2:-76613424 Msa1077790:CDS
AGAGATATCTTGACATTACT+TGG 0.437895 7_2:-76610029 Msa1077790:CDS
CCACTTAAAGAAGACGAACT+TGG 0.439642 7_2:-76612975 Msa1077790:CDS
GAATACCCTGGCCAGATTGT+TGG 0.444431 7_2:-76609641 Msa1077790:CDS
TTGTGAAGCTTCTAAAATAA+GGG 0.449884 7_2:+76612868 None:intergenic
AACCGTGCCAATGAGGTCTA+AGG 0.458884 7_2:+76609971 None:intergenic
TATGCAGAATTTCGCAATGC+AGG 0.461823 7_2:-76609590 Msa1077790:CDS
AAACATGCTGTGAGGGGAAA+TGG 0.465819 7_2:-76612786 Msa1077790:CDS
TAAATTCGACCTCATTCTCT+TGG 0.485891 7_2:-76609943 Msa1077790:CDS
ACAATCACTTCTAAACCAAC+CGG 0.487692 7_2:+76612897 None:intergenic
GACGTGAGACACCAACAATC+TGG 0.490889 7_2:+76609630 None:intergenic
GATGATCTACATCATGAAGA+TGG 0.493143 7_2:-76609563 Msa1077790:CDS
ATTTGGTTCCACCTTCTTCG+TGG 0.495745 7_2:+76613196 None:intergenic
CCCGCGTGGATTAAAAGTAC+TGG 0.511605 7_2:-76610087 Msa1077790:CDS
GAGACACCAACAATCTGGCC+AGG 0.513873 7_2:+76609635 None:intergenic
AAAGAAGCCTTAGACCTCAT+TGG 0.516268 7_2:-76609978 Msa1077790:CDS
TCACAATGTGCTTCAAGAAG+TGG 0.523622 7_2:-76612851 Msa1077790:CDS
AGGATCATGCCCGTCATGGA+TGG 0.527719 7_2:-76609918 Msa1077790:CDS
AAATTTCTGTTCCTTCGTCA+TGG 0.529500 7_2:+76613505 None:intergenic
TATCTTGACATTACTTGGTG+TGG 0.530817 7_2:-76610024 Msa1077790:CDS
AAATTGGAAACATGCTGTGA+GGG 0.531590 7_2:-76612793 Msa1077790:CDS
TTTCAACATATGATAGTGCA+AGG 0.532595 7_2:+76609535 None:intergenic
AAAAGGTCATGCTAGTTGAC+AGG 0.534345 7_2:+76609491 None:intergenic
AGGTGTCACCCATGTGATGA+AGG 0.535873 7_2:-76613257 Msa1077790:CDS
AAGTAGCGAATACCAAGAAA+AGG 0.536745 7_2:-76613277 Msa1077790:CDS
CATTTGGTCATTTAGGGTCA+AGG 0.537795 7_2:-76612739 Msa1077790:CDS
TTTGCGTCAGATATCGATGA+AGG 0.539968 7_2:-76613017 Msa1077790:CDS
GGAGAAGATCAAAGGATACA+TGG 0.546580 7_2:-76613471 Msa1077790:CDS
ACCGTAATTCCATCCATGAC+GGG 0.549235 7_2:+76609909 None:intergenic
ACAGAAATTTGCTATCACTA+AGG 0.550411 7_2:-76613492 Msa1077790:CDS
GGCTAGGATCATGCCCGTCA+TGG 0.551289 7_2:-76609922 Msa1077790:CDS
TGGATTAAAAGTACTGGTTG+TGG 0.556379 7_2:-76610081 Msa1077790:CDS
TCGACCTCATTCTCTTGGCT+AGG 0.556456 7_2:-76609938 Msa1077790:CDS
AACAAGATCAAGGAGTTGAA+TGG 0.557360 7_2:-76613074 Msa1077790:CDS
TCTTCTTCAGAATAAAATTG+TGG 0.559109 7_2:+76613377 None:intergenic
TAACGTCAAGAACAAGATCA+AGG 0.559747 7_2:-76613084 Msa1077790:CDS
AAAGGAGACTTTAGATACAA+AGG 0.565224 7_2:-76612934 Msa1077790:CDS
GCCAAGCAAAGTTATGGAGA+AGG 0.574243 7_2:+76613423 None:intergenic
ATTCCACAAAACACAGTGGA+AGG 0.576751 7_2:-76613302 Msa1077790:CDS
ACCAAAGACCACGAGGAAGG+TGG 0.579088 7_2:-76613162 Msa1077790:CDS
ATGCAGAATTTCGCAATGCA+GGG 0.581025 7_2:-76609589 Msa1077790:CDS
GAAACCAAAGACCACGAAGA+AGG 0.582770 7_2:-76613207 Msa1077790:CDS
ATCACTAAGGAGAAGATCAA+AGG 0.586998 7_2:-76613479 Msa1077790:CDS
TGATCCTAGCCAAGAGAATG+AGG 0.588523 7_2:+76609934 None:intergenic
AACCGTAATTCCATCCATGA+CGG 0.593130 7_2:+76609908 None:intergenic
GACATGCTACCTTCATCACA+TGG 0.593230 7_2:+76613248 None:intergenic
TTAATAGGTAATATTGGCGG+AGG 0.598936 7_2:+76613104 None:intergenic
TACGTTCAACCGTGCCAATG+AGG 0.601575 7_2:+76609964 None:intergenic
GAAACCAAAGACCACGAGGA+AGG 0.602167 7_2:-76613165 Msa1077790:CDS
ACGTTAATAGGTAATATTGG+CGG 0.607613 7_2:+76613101 None:intergenic
AGCCTTAGACCTCATTGGCA+CGG 0.608494 7_2:-76609973 Msa1077790:CDS
TGGTTTAGAAGTGATTGTGT+TGG 0.618872 7_2:-76612892 Msa1077790:CDS
AGATGATGATCTTGTTCGAA+TGG 0.623757 7_2:-76610057 Msa1077790:CDS
ACCAAAGACCACGAAGAAGG+TGG 0.629055 7_2:-76613204 Msa1077790:CDS
TTCAACATATGATAGTGCAA+GGG 0.630612 7_2:+76609536 None:intergenic
TTTCGGTTCCACCTTCCTCG+TGG 0.635344 7_2:+76613154 None:intergenic
AATTGGAAACATGCTGTGAG+GGG 0.651158 7_2:-76612792 Msa1077790:CDS
TGAAGGTAGCATGTCTTATG+CGG 0.655262 7_2:-76613240 Msa1077790:CDS
AGACACCAACAATCTGGCCA+GGG 0.657108 7_2:+76609636 None:intergenic
AAATACTGAAGCCATGACGA+AGG 0.663599 7_2:-76613516 Msa1077790:CDS
AAAATTGGAAACATGCTGTG+AGG 0.670199 7_2:-76612794 Msa1077790:CDS
AAGTTATGGAGAAGGTTGAG+TGG 0.683312 7_2:+76613431 None:intergenic
GAACGAAACCAAAGACCACG+AGG 0.685629 7_2:-76613169 Msa1077790:CDS
CTGCGCGATTTAGAATACCC+TGG 0.695519 7_2:-76609653 Msa1077790:CDS
ACATGCTACCTTCATCACAT+GGG 0.704522 7_2:+76613249 None:intergenic
AAATATTCCACAAAACACAG+TGG 0.735384 7_2:-76613306 Msa1077790:CDS
TATCATCACAGAGTCCCGCG+TGG 0.741838 7_2:-76610101 Msa1077790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATCTATTATGTTT+TGG - chr7_2:76611455-76611474 Msa1077790:intron 10.0%
!! TGAAAAAAAAAAGTAAAAAA+AGG + chr7_2:76612348-76612367 None:intergenic 10.0%
!!! TTTTTCTTATCTTGTTTTTT+CGG + chr7_2:76609901-76609920 None:intergenic 15.0%
!! AAAACAAGATAAGAAAAATT+TGG - chr7_2:76609903-76609922 Msa1077790:intron 15.0%
!!! TGTATGATTTTCTTTTTAAA+AGG - chr7_2:76610821-76610840 Msa1077790:intron 15.0%
!! TCAAAACTTATAGATTAAAA+AGG + chr7_2:76611260-76611279 None:intergenic 15.0%
!!! AAATTTGTCACAAATTTTAT+AGG + chr7_2:76611570-76611589 None:intergenic 15.0%
!! TTACAAATATTTCAAAATGA+AGG + chr7_2:76611666-76611685 None:intergenic 15.0%
!!! TTCATTTTGAAATATTTGTA+AGG - chr7_2:76611665-76611684 Msa1077790:intron 15.0%
!! ATGTAAATTAGAGATATATT+TGG + chr7_2:76611953-76611972 None:intergenic 15.0%
!! ATTTATATCTAAGAATTAGA+GGG + chr7_2:76612497-76612516 None:intergenic 15.0%
!! TATTTATATCTAAGAATTAG+AGG + chr7_2:76612498-76612517 None:intergenic 15.0%
!! TTAGATACAAAGGATAAAAA+CGG - chr7_2:76610111-76610130 Msa1077790:intron 20.0%
!!! TTTACAGTCTTATACAAAAT+TGG - chr7_2:76610226-76610245 Msa1077790:intron 20.0%
!! CTTTGTACTCAAAATTAATT+AGG - chr7_2:76610329-76610348 Msa1077790:intron 20.0%
!! ATATAGAAAAACAAATTCCT+AGG + chr7_2:76610473-76610492 None:intergenic 20.0%
!! TTGATAAAAAGACCAATATT+AGG + chr7_2:76610792-76610811 None:intergenic 20.0%
!!! ATTTATCTATTATGTTTTGG+TGG - chr7_2:76611458-76611477 Msa1077790:intron 20.0%
!!! TTTATCTATTATGTTTTGGT+GGG - chr7_2:76611459-76611478 Msa1077790:intron 20.0%
!! AATATTTCAAAATGAAGGTA+CGG + chr7_2:76611661-76611680 None:intergenic 20.0%
!!! TATTTTATGGACTAACAATT+TGG - chr7_2:76612222-76612241 Msa1077790:intron 20.0%
!! ATAGAAAATCAAGATTGAAA+AGG + chr7_2:76612863-76612882 None:intergenic 20.0%
!!! ATTGCTTTAAACTAATTCAT+GGG + chr7_2:76613206-76613225 None:intergenic 20.0%
!!! AATTGCTTTAAACTAATTCA+TGG + chr7_2:76613207-76613226 None:intergenic 20.0%
!! ATTATGAATGATTATATGCT+AGG + chr7_2:76613311-76613330 None:intergenic 20.0%
!!! TGTTGAAACTAATTTTGAAA+AGG - chr7_2:76613515-76613534 Msa1077790:CDS 20.0%
!!! GTTGAAACTAATTTTGAAAA+GGG - chr7_2:76613516-76613535 Msa1077790:CDS 20.0%
! ATACATGGAAAAAGCAAAAA+CGG - chr7_2:76609579-76609598 Msa1077790:CDS 25.0%
! TCTTCTTCAGAATAAAATTG+TGG + chr7_2:76609661-76609680 None:intergenic 25.0%
!!! TTTGGTTTCGTTCTTTTATT+TGG + chr7_2:76609859-76609878 None:intergenic 25.0%
! TTGACGTTAATAGGTAATAT+TGG + chr7_2:76609940-76609959 None:intergenic 25.0%
!!! TTGTGAAGCTTCTAAAATAA+GGG + chr7_2:76610170-76610189 None:intergenic 25.0%
!!! ATTGTGAAGCTTCTAAAATA+AGG + chr7_2:76610171-76610190 None:intergenic 25.0%
!!! CAAAACACCAAACTTTTTTA+AGG - chr7_2:76610635-76610654 Msa1077790:intron 25.0%
! GAAAGATCCTTAAAAAAGTT+TGG + chr7_2:76610645-76610664 None:intergenic 25.0%
!! GGACAAAATATTTTCTTACT+AGG - chr7_2:76610742-76610761 Msa1077790:intron 25.0%
! TAGCAGGAAGAATTATTATA+TGG - chr7_2:76611104-76611123 Msa1077790:intron 25.0%
!! ATTATTTTCCTTGATCATGT+TGG - chr7_2:76611233-76611252 Msa1077790:intron 25.0%
! GTCTGTGATAAAATCATTTA+TGG - chr7_2:76611325-76611344 Msa1077790:intron 25.0%
!!! ATATGCAAGGTTTTAAAAAC+CGG - chr7_2:76611740-76611759 Msa1077790:intron 25.0%
! ATAGAGCACAGTTTAAATTT+CGG + chr7_2:76612149-76612168 None:intergenic 25.0%
!! TTAGGAAAGTAAGAATTTTG+AGG + chr7_2:76612251-76612270 None:intergenic 25.0%
! ATTAGAGGGTAAATTTAGAT+AGG + chr7_2:76612483-76612502 None:intergenic 25.0%
! ATTACAAGATTTCAAGATGA+TGG + chr7_2:76612637-76612656 None:intergenic 25.0%
! GTATCAAGATAAAGATATAG+AGG + chr7_2:76612664-76612683 None:intergenic 25.0%
! AAACAGAACTGTAGTAATTA+AGG - chr7_2:76612886-76612905 Msa1077790:CDS 25.0%
! TACATACATACATACATACA+CGG - chr7_2:76613165-76613184 Msa1077790:CDS 25.0%
!! ACAGAAATTTGCTATCACTA+AGG - chr7_2:76609543-76609562 Msa1077790:CDS 30.0%
!!! GTGGAATATTTTGAGTTTCT+TGG + chr7_2:76609720-76609739 None:intergenic 30.0%
AAATATTCCACAAAACACAG+TGG - chr7_2:76609729-76609748 Msa1077790:intron 30.0%
ACGTTAATAGGTAATATTGG+CGG + chr7_2:76609937-76609956 None:intergenic 30.0%
ATCTTGTTCTTGACGTTAAT+AGG + chr7_2:76609949-76609968 None:intergenic 30.0%
AAAGGAGACTTTAGATACAA+AGG - chr7_2:76610101-76610120 Msa1077790:intron 30.0%
AAAGGATAAAAACGGTAAAC+CGG - chr7_2:76610119-76610138 Msa1077790:intron 30.0%
TAGGTCAAAAACTCAACATT+TGG - chr7_2:76610280-76610299 Msa1077790:intron 30.0%
AACTCAACATTTGGTCATTT+AGG - chr7_2:76610289-76610308 Msa1077790:intron 30.0%
ACTCAACATTTGGTCATTTA+GGG - chr7_2:76610290-76610309 Msa1077790:intron 30.0%
TACTTCTCTGTATCAATGTA+TGG - chr7_2:76610575-76610594 Msa1077790:intron 30.0%
TTTCCCTTTATGCCTAATAT+TGG - chr7_2:76610777-76610796 Msa1077790:intron 30.0%
AGACCAATATTAGGCATAAA+GGG + chr7_2:76610783-76610802 None:intergenic 30.0%
AAGACCAATATTAGGCATAA+AGG + chr7_2:76610784-76610803 None:intergenic 30.0%
TTATAGCACACTCAATAAAC+AGG + chr7_2:76610929-76610948 None:intergenic 30.0%
! TATGGTCTTCAATTTGCTTA+TGG - chr7_2:76611122-76611141 Msa1077790:intron 30.0%
AAATAATGTAGAGTCACCTA+AGG + chr7_2:76611220-76611239 None:intergenic 30.0%
AACTTAGTCTCATACATTCA+AGG + chr7_2:76611402-76611421 None:intergenic 30.0%
AGTCTCAAAGATTACGAATT+TGG + chr7_2:76611534-76611553 None:intergenic 30.0%
! TTGAGCTGATTCAATTTGAT+TGG - chr7_2:76611603-76611622 Msa1077790:intron 30.0%
ACATAATCAAAATCACAGCT+AGG + chr7_2:76611696-76611715 None:intergenic 30.0%
AAAACCTTGCATATGATAGA+AGG + chr7_2:76611734-76611753 None:intergenic 30.0%
! AACAACTTACCTTTTTGTTG+CGG + chr7_2:76611785-76611804 None:intergenic 30.0%
! TATTTGGAGTCTTAAACTAG+AGG + chr7_2:76611937-76611956 None:intergenic 30.0%
ACTTGTATACTCAATGTTGT+CGG + chr7_2:76612172-76612191 None:intergenic 30.0%
!!! CAACTGTGTGACTTATTTTA+TGG - chr7_2:76612209-76612228 Msa1077790:intron 30.0%
TTCCTAACTTCAAACTTAGT+TGG - chr7_2:76612264-76612283 Msa1077790:intron 30.0%
! TACCAACTAAGTTTGAAGTT+AGG + chr7_2:76612269-76612288 None:intergenic 30.0%
! TTGAAGTTCCTCTATGATTT+TGG - chr7_2:76612306-76612325 Msa1077790:intron 30.0%
!!! AGTTAGTTGGTTATTTTGGT+TGG + chr7_2:76612383-76612402 None:intergenic 30.0%
! AGTCAGTTAGTTGGTTATTT+TGG + chr7_2:76612387-76612406 None:intergenic 30.0%
AATAAAGTGAGTCAGTTAGT+TGG + chr7_2:76612396-76612415 None:intergenic 30.0%
! GATAGGTAGAAATTGACTTT+GGG + chr7_2:76612466-76612485 None:intergenic 30.0%
! AGATAGGTAGAAATTGACTT+TGG + chr7_2:76612467-76612486 None:intergenic 30.0%
AGAACAAACTCTTATTCTGT+GGG + chr7_2:76612589-76612608 None:intergenic 30.0%
CTGTAGTAATTAAGGCATAA+TGG - chr7_2:76612894-76612913 Msa1077790:CDS 30.0%
AGAGATATCTTGACATTACT+TGG - chr7_2:76613006-76613025 Msa1077790:CDS 30.0%
ATGAACAGAAAGAAAATGCA+TGG - chr7_2:76613269-76613288 Msa1077790:CDS 30.0%
TGAACAGAAAGAAAATGCAT+GGG - chr7_2:76613270-76613289 Msa1077790:CDS 30.0%
CTGCATATTCATCATTAGTA+AGG + chr7_2:76613432-76613451 None:intergenic 30.0%
! TTCAACATATGATAGTGCAA+GGG + chr7_2:76613502-76613521 None:intergenic 30.0%
! TTTCAACATATGATAGTGCA+AGG + chr7_2:76613503-76613522 None:intergenic 30.0%
AAATTTCTGTTCCTTCGTCA+TGG + chr7_2:76609533-76609552 None:intergenic 35.0%
ATCACTAAGGAGAAGATCAA+AGG - chr7_2:76609556-76609575 Msa1077790:CDS 35.0%
AAGTAGCGAATACCAAGAAA+AGG - chr7_2:76609758-76609777 Msa1077790:intron 35.0%
TTAATAGGTAATATTGGCGG+AGG + chr7_2:76609934-76609953 None:intergenic 35.0%
TAACGTCAAGAACAAGATCA+AGG - chr7_2:76609951-76609970 Msa1077790:CDS 35.0%
AACAAGATCAAGGAGTTGAA+TGG - chr7_2:76609961-76609980 Msa1077790:CDS 35.0%
! GTGGCATTAAAAGACGATTT+TGG + chr7_2:76610044-76610063 None:intergenic 35.0%
! TTTTCTCACCAAGACAGAAA+AGG - chr7_2:76610083-76610102 Msa1077790:CDS 35.0%
! TAAAGTCTCCTTTTCTGTCT+TGG + chr7_2:76610094-76610113 None:intergenic 35.0%
ACAATCACTTCTAAACCAAC+CGG + chr7_2:76610141-76610160 None:intergenic 35.0%
TGGTTTAGAAGTGATTGTGT+TGG - chr7_2:76610143-76610162 Msa1077790:intron 35.0%
AGTGGAGAATGACTGATAAA+TGG - chr7_2:76610202-76610221 Msa1077790:intron 35.0%
GTGGAGAATGACTGATAAAT+GGG - chr7_2:76610203-76610222 Msa1077790:intron 35.0%
AAAATTGGAAACATGCTGTG+AGG - chr7_2:76610241-76610260 Msa1077790:intron 35.0%
AAATTGGAAACATGCTGTGA+GGG - chr7_2:76610242-76610261 Msa1077790:intron 35.0%
!!! AGGGGAAATGGTTTTGAAAT+AGG - chr7_2:76610261-76610280 Msa1077790:intron 35.0%
! GTACTTTGTTTATGCGTTTC+TGG - chr7_2:76610393-76610412 Msa1077790:intron 35.0%
! CAGTTTTTGCTCTCTTTCAT+TGG - chr7_2:76610497-76610516 Msa1077790:intron 35.0%
! TAAGGATCTTTCCTTTTGTG+AGG - chr7_2:76610653-76610672 Msa1077790:intron 35.0%
ATGCAATCAAACCTCACAAA+AGG + chr7_2:76610667-76610686 None:intergenic 35.0%
ATCAGTTCAGAATCTTTACC+TGG - chr7_2:76610699-76610718 Msa1077790:intron 35.0%
TAGTATGTGTCAAGTTCTGT+TGG - chr7_2:76610875-76610894 Msa1077790:intron 35.0%
AATCTCCAGTTTCATATGCA+GGG - chr7_2:76611056-76611075 Msa1077790:intron 35.0%
! GACAACTTGTTCTAAGTAGT+TGG - chr7_2:76611144-76611163 Msa1077790:intron 35.0%
CAATTTGACTATGACACCTT+AGG - chr7_2:76611201-76611220 Msa1077790:intron 35.0%
AAAAAGGACCAACATGATCA+AGG + chr7_2:76611244-76611263 None:intergenic 35.0%
! TTTTCTCAAAACATTCGCAG+TGG - chr7_2:76611350-76611369 Msa1077790:intron 35.0%
AGTCTCATACATTCAAGGAT+GGG + chr7_2:76611397-76611416 None:intergenic 35.0%
TAGTCTCATACATTCAAGGA+TGG + chr7_2:76611398-76611417 None:intergenic 35.0%
TTTGGTGGGATATAAGTGTT+TGG - chr7_2:76611473-76611492 Msa1077790:intron 35.0%
! CATTGACACAAAGACGATTT+TGG + chr7_2:76611504-76611523 None:intergenic 35.0%
ATCGTCTTTGTGTCAATGTT+AGG - chr7_2:76611506-76611525 Msa1077790:intron 35.0%
TCGTCTTTGTGTCAATGTTA+GGG - chr7_2:76611507-76611526 Msa1077790:intron 35.0%
! TAACCACTAGCTTAAATGCT+TGG + chr7_2:76611636-76611655 None:intergenic 35.0%
ATGATAGAAGGAACATGGAA+TGG + chr7_2:76611722-76611741 None:intergenic 35.0%
TGCATATGATAGAAGGAACA+TGG + chr7_2:76611727-76611746 None:intergenic 35.0%
TGTTCCTTCTATCATATGCA+AGG - chr7_2:76611727-76611746 Msa1077790:intron 35.0%
! TTTTGTTGCGGCATTTTTCT+CGG + chr7_2:76611773-76611792 None:intergenic 35.0%
AGAAAAATGCCGCAACAAAA+AGG - chr7_2:76611773-76611792 Msa1077790:intron 35.0%
AAACTAGAGGAAGAGTCTAA+AGG + chr7_2:76611924-76611943 None:intergenic 35.0%
AACTGCTTCCAAAATCATAG+AGG + chr7_2:76612317-76612336 None:intergenic 35.0%
GAGAACAAACTCTTATTCTG+TGG + chr7_2:76612590-76612609 None:intergenic 35.0%
! ATAAGAGTTTGTTCTCCACA+AGG - chr7_2:76612594-76612613 Msa1077790:intron 35.0%
GAAAGAACTCTTGATTACGT+GGG + chr7_2:76612758-76612777 None:intergenic 35.0%
AGAAAGAACTCTTGATTACG+TGG + chr7_2:76612759-76612778 None:intergenic 35.0%
!! TGGATTAAAAGTACTGGTTG+TGG - chr7_2:76612954-76612973 Msa1077790:CDS 35.0%
AGATGATGATCTTGTTCGAA+TGG - chr7_2:76612978-76612997 Msa1077790:CDS 35.0%
! TATCTTGACATTACTTGGTG+TGG - chr7_2:76613011-76613030 Msa1077790:CDS 35.0%
TAAATTCGACCTCATTCTCT+TGG - chr7_2:76613092-76613111 Msa1077790:CDS 35.0%
GAACAGAAAGAAAATGCATG+GGG - chr7_2:76613271-76613290 Msa1077790:CDS 35.0%
GATGATCTACATCATGAAGA+TGG - chr7_2:76613472-76613491 Msa1077790:CDS 35.0%
AAATACTGAAGCCATGACGA+AGG - chr7_2:76609519-76609538 Msa1077790:CDS 40.0%
GGAGAAGATCAAAGGATACA+TGG - chr7_2:76609564-76609583 Msa1077790:CDS 40.0%
AAGTTATGGAGAAGGTTGAG+TGG + chr7_2:76609607-76609626 None:intergenic 40.0%
ACCTTCTCCATAACTTTGCT+TGG - chr7_2:76609611-76609630 Msa1077790:CDS 40.0%
ATTCCACAAAACACAGTGGA+AGG - chr7_2:76609733-76609752 Msa1077790:intron 40.0%
ACATGCTACCTTCATCACAT+GGG + chr7_2:76609789-76609808 None:intergenic 40.0%
TGAAGGTAGCATGTCTTATG+CGG - chr7_2:76609795-76609814 Msa1077790:intron 40.0%
TTTGCGTCAGATATCGATGA+AGG - chr7_2:76610018-76610037 Msa1077790:CDS 40.0%
CCAAGTTCGTCTTCTTTAAG+TGG + chr7_2:76610063-76610082 None:intergenic 40.0%
CCACTTAAAGAAGACGAACT+TGG - chr7_2:76610060-76610079 Msa1077790:CDS 40.0%
GATAAAAACGGTAAACCGGT+TGG - chr7_2:76610123-76610142 Msa1077790:intron 40.0%
TCACAATGTGCTTCAAGAAG+TGG - chr7_2:76610184-76610203 Msa1077790:intron 40.0%
AATTGGAAACATGCTGTGAG+GGG - chr7_2:76610243-76610262 Msa1077790:intron 40.0%
! CATTTGGTCATTTAGGGTCA+AGG - chr7_2:76610296-76610315 Msa1077790:intron 40.0%
!! TGTTTATGCGTTTCTGGCTT+TGG - chr7_2:76610399-76610418 Msa1077790:intron 40.0%
CTAATACAGCACATGAACAG+GGG + chr7_2:76610438-76610457 None:intergenic 40.0%
GCTAATACAGCACATGAACA+GGG + chr7_2:76610439-76610458 None:intergenic 40.0%
TGCTAATACAGCACATGAAC+AGG + chr7_2:76610440-76610459 None:intergenic 40.0%
TGTGCTGTATTAGCATGAGA+AGG - chr7_2:76610445-76610464 Msa1077790:intron 40.0%
ATTAGCATGAGAAGGAACCT+AGG - chr7_2:76610453-76610472 Msa1077790:intron 40.0%
! AGTCTAGAACTTGTGTTACC+AGG + chr7_2:76610720-76610739 None:intergenic 40.0%
!! GTAACACAAGTTCTAGACTC+TGG - chr7_2:76610721-76610740 Msa1077790:intron 40.0%
AGCACACTCAATAAACAGGA+TGG + chr7_2:76610925-76610944 None:intergenic 40.0%
GATTCTCTTGCAACTACTTC+AGG + chr7_2:76611040-76611059 None:intergenic 40.0%
GAATCTCCAGTTTCATATGC+AGG - chr7_2:76611055-76611074 Msa1077790:intron 40.0%
ATCTCCAGTTTCATATGCAG+GGG - chr7_2:76611057-76611076 Msa1077790:intron 40.0%
ACTATTGAAGTTGCTGCTAG+TGG + chr7_2:76611085-76611104 None:intergenic 40.0%
TCATACATTCAAGGATGGGA+AGG + chr7_2:76611393-76611412 None:intergenic 40.0%
! TGACACAAAGACGATTTTGG+TGG + chr7_2:76611501-76611520 None:intergenic 40.0%
TTGCCAAGCATTTAAGCTAG+TGG - chr7_2:76611630-76611649 Msa1077790:intron 40.0%
! CATTTTTCTCGGTAATTGGC+CGG + chr7_2:76611762-76611781 None:intergenic 40.0%
GCTGTAAAAATGGGGGAAAA+CGG + chr7_2:76611809-76611828 None:intergenic 40.0%
TTTCGTCGCGCTGTAAAAAT+GGG + chr7_2:76611818-76611837 None:intergenic 40.0%
ATTTCGTCGCGCTGTAAAAA+TGG + chr7_2:76611819-76611838 None:intergenic 40.0%
! CGAAATTTTATACGCGATCG+CGG - chr7_2:76612111-76612130 Msa1077790:intron 40.0%
TTAAATTTCGGTCCCAGTCA+AGG + chr7_2:76612137-76612156 None:intergenic 40.0%
GAGTTCTTTCTTTCTCCACA+AGG - chr7_2:76612768-76612787 Msa1077790:CDS 40.0%
! ACCAGTACTTTTAATCCACG+CGG + chr7_2:76612952-76612971 None:intergenic 40.0%
GAAACTCACGCAGTCAAAAA+TGG - chr7_2:76613033-76613052 Msa1077790:CDS 40.0%
AAAGAAGCCTTAGACCTCAT+TGG - chr7_2:76613057-76613076 Msa1077790:CDS 40.0%
AACCGTAATTCCATCCATGA+CGG + chr7_2:76613130-76613149 None:intergenic 40.0%
TATGCAGAATTTCGCAATGC+AGG - chr7_2:76613445-76613464 Msa1077790:CDS 40.0%
ATGCAGAATTTCGCAATGCA+GGG - chr7_2:76613446-76613465 Msa1077790:CDS 40.0%
GCCAAGCAAAGTTATGGAGA+AGG + chr7_2:76609615-76609634 None:intergenic 45.0%
CGCATTGCCAAGCAAAGTTA+TGG + chr7_2:76609621-76609640 None:intergenic 45.0%
! TCTCCTTCCACTGTGTTTTG+TGG + chr7_2:76609739-76609758 None:intergenic 45.0%
! ACATGGGTGACACCTTTTCT+TGG + chr7_2:76609773-76609792 None:intergenic 45.0%
GACATGCTACCTTCATCACA+TGG + chr7_2:76609790-76609809 None:intergenic 45.0%
GAAACCAAAGACCACGAAGA+AGG - chr7_2:76609828-76609847 Msa1077790:intron 45.0%
! ATTTGGTTCCACCTTCTTCG+TGG + chr7_2:76609842-76609861 None:intergenic 45.0%
AAACATGCTGTGAGGGGAAA+TGG - chr7_2:76610249-76610268 Msa1077790:intron 45.0%
!!! TGCGTTTCTGGCTTTGGTTT+TGG - chr7_2:76610405-76610424 Msa1077790:intron 45.0%
GCAGCAACTTCAATAGTAGC+AGG - chr7_2:76611088-76611107 Msa1077790:intron 45.0%
ATGGGAAGGCTAAAGCTCAT+AGG + chr7_2:76611379-76611398 None:intergenic 45.0%
! GCGGCATTTTTCTCGGTAAT+TGG + chr7_2:76611766-76611785 None:intergenic 45.0%
TTCGTCGCGCTGTAAAAATG+GGG + chr7_2:76611817-76611836 None:intergenic 45.0%
AGCGCGACGAAATATCGTTA+TGG - chr7_2:76611826-76611845 Msa1077790:intron 45.0%
GCGCGACGAAATATCGTTAT+GGG - chr7_2:76611827-76611846 Msa1077790:intron 45.0%
ATGCAGTTGTACTTGCCTTG+TGG + chr7_2:76612612-76612631 None:intergenic 45.0%
! CCAGTACTTTTAATCCACGC+GGG + chr7_2:76612951-76612970 None:intergenic 45.0%
TGATCCTAGCCAAGAGAATG+AGG + chr7_2:76613104-76613123 None:intergenic 45.0%
ACCGTAATTCCATCCATGAC+GGG + chr7_2:76613129-76613148 None:intergenic 45.0%
GTCATGGATGGAATTACGGT+TGG - chr7_2:76613129-76613148 Msa1077790:CDS 45.0%
CATTCATATGTGTGCACTGC+AGG - chr7_2:76613348-76613367 Msa1077790:CDS 45.0%
! AGGTGTCACCCATGTGATGA+AGG - chr7_2:76609778-76609797 Msa1077790:intron 50.0%
ACCAAAGACCACGAAGAAGG+TGG - chr7_2:76609831-76609850 Msa1077790:intron 50.0%
TCCACCTTCTTCGTGGTCTT+TGG + chr7_2:76609835-76609854 None:intergenic 50.0%
GAACGAAACCAAAGACCACG+AGG - chr7_2:76609866-76609885 Msa1077790:intron 50.0%
GAAACCAAAGACCACGAGGA+AGG - chr7_2:76609870-76609889 Msa1077790:intron 50.0%
TCGTCGCGCTGTAAAAATGG+GGG + chr7_2:76611816-76611835 None:intergenic 50.0%
GTCGCAGATTTCGCGATTTC+AGG + chr7_2:76612050-76612069 None:intergenic 50.0%
TTGCAGTAGCACTTGCCTTG+TGG + chr7_2:76612786-76612805 None:intergenic 50.0%
GGGACTCTGTGATGATATGG+AGG + chr7_2:76612931-76612950 None:intergenic 50.0%
! CCCGCGTGGATTAAAAGTAC+TGG - chr7_2:76612948-76612967 Msa1077790:CDS 50.0%
AGCCTTAGACCTCATTGGCA+CGG - chr7_2:76613062-76613081 Msa1077790:CDS 50.0%
AACCGTGCCAATGAGGTCTA+AGG + chr7_2:76613067-76613086 None:intergenic 50.0%
TACGTTCAACCGTGCCAATG+AGG + chr7_2:76613074-76613093 None:intergenic 50.0%
TCGACCTCATTCTCTTGGCT+AGG - chr7_2:76613097-76613116 Msa1077790:CDS 50.0%
GCCCGTCATGGATGGAATTA+CGG - chr7_2:76613125-76613144 Msa1077790:CDS 50.0%
! CTGCGCGATTTAGAATACCC+TGG - chr7_2:76613382-76613401 Msa1077790:CDS 50.0%
GAATACCCTGGCCAGATTGT+TGG - chr7_2:76613394-76613413 Msa1077790:CDS 50.0%
AGACACCAACAATCTGGCCA+GGG + chr7_2:76613402-76613421 None:intergenic 50.0%
GACGTGAGACACCAACAATC+TGG + chr7_2:76613408-76613427 None:intergenic 50.0%
ACCAAAGACCACGAGGAAGG+TGG - chr7_2:76609873-76609892 Msa1077790:intron 55.0%
TCCACCTTCCTCGTGGTCTT+TGG + chr7_2:76609877-76609896 None:intergenic 55.0%
TTTCGGTTCCACCTTCCTCG+TGG + chr7_2:76609884-76609903 None:intergenic 55.0%
GGCACCCCTGCATATGAAAC+TGG + chr7_2:76611064-76611083 None:intergenic 55.0%
CGCGGGACTCTGTGATGATA+TGG + chr7_2:76612934-76612953 None:intergenic 55.0%
TATCATCACAGAGTCCCGCG+TGG - chr7_2:76612934-76612953 Msa1077790:CDS 55.0%
AGGATCATGCCCGTCATGGA+TGG - chr7_2:76613117-76613136 Msa1077790:CDS 55.0%
GAGACACCAACAATCTGGCC+AGG + chr7_2:76613403-76613422 None:intergenic 55.0%
GGCTAGGATCATGCCCGTCA+TGG - chr7_2:76613113-76613132 Msa1077790:CDS 60.0%
TACGCGATCGCGGCCTTGAC+TGG - chr7_2:76612121-76612140 Msa1077790:intron 65.0%
ACGCGATCGCGGCCTTGACT+GGG - chr7_2:76612122-76612141 Msa1077790:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 76609502 76613555 76609502 ID=Msa1077790;Name=Msa1077790
chr7_2 mRNA 76609502 76613555 76609502 ID=Msa1077790-mRNA-1;Parent=Msa1077790;Name=Msa1077790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|402
chr7_2 exon 76612735 76613555 76612735 ID=Msa1077790-mRNA-1:exon:18528;Parent=Msa1077790-mRNA-1
chr7_2 exon 76609911 76610112 76609911 ID=Msa1077790-mRNA-1:exon:18527;Parent=Msa1077790-mRNA-1
chr7_2 exon 76609502 76609687 76609502 ID=Msa1077790-mRNA-1:exon:18526;Parent=Msa1077790-mRNA-1
chr7_2 CDS 76612735 76613555 76612735 ID=Msa1077790-mRNA-1:cds;Parent=Msa1077790-mRNA-1
chr7_2 CDS 76609911 76610112 76609911 ID=Msa1077790-mRNA-1:cds;Parent=Msa1077790-mRNA-1
chr7_2 CDS 76609502 76609687 76609502 ID=Msa1077790-mRNA-1:cds;Parent=Msa1077790-mRNA-1
Gene Sequence

>Msa1077790

ATGTTGCAGAACAATCAAAATACTGAAGCCATGACGAAGGAACAGAAATTTGCTATCACTAAGGAGAAGATCAAAGGATACATGGAAAAAGCAAAAACGGCGCCACTCAACCTTCTCCATAACTTTGCTTGGCAATGCGTGATAGCTAAACATGCTCCACAATTTTATTCTGAAGAAGAGTTAGCACAAATAAAGAAACACAGTCAACTTGTTCTCCAAGAAACTCAAAATATTCCACAAAACACAGTGGAAGGAGAAGTAGCGAATACCAAGAAAAGGTGTCACCCATGTGATGAAGGTAGCATGTCTTATGCGGAAAGAAGAATGAAACCAAAGACCACGAAGAAGGTGGAACCAAATAAAAGAACGAAACCAAAGACCACGAGGAAGGTGGAACCGAAAAAACAAGATAAGAAAAATTTGGCGTTACCTCCGCCAATATTACCTATTAACGTCAAGAACAAGATCAAGGAGTTGAATGGCACTGATATCAGATATATCATGTCAAAGAAATTGTTTGCGTCAGATATCGATGAAGGCCAAAATCGTCTTTTAATGCCACTTAAAGAAGACGAACTTGGTTTTCTCACCAAGACAGAAAAGGAGACTTTAGATACAAAGGATAAAAACGGTAAACCGGTTGGTTTAGAAGTGATTGTGTTGGACCCTTATTTTAGAAGCTTCACAATGTGCTTCAAGAAGTGGAGAATGACTGATAAATGGGTTTACAGTCTTATACAAAATTGGAAACATGCTGTGAGGGGAAATGGTTTTGAAATAGGTCAAAAACTCAACATTTGGTCATTTAGGGTCAAGGACAAAGTCCCGCGTGGATTAAAAGTACTGGTTGTGGAAGATGATGATCTTGTTCGAATGGCTCATAGAGATATCTTGACATTACTTGGTGTGGAAACTCACGCAGTCAAAAATGGTAAAGAAGCCTTAGACCTCATTGGCACGGTTGAACGTAAATTCGACCTCATTCTCTTGGCTAGGATCATGCCCGTCATGGATGGAATTACGGCAACAAAGAAGCTGCGCGATTTAGAATACCCTGGCCAGATTGTTGGTGTCTCACGTCGCCTTACTAATGATGAATATGCAGAATTTCGCAATGCAGGGCTAGATGATCTACATCATGAAGATGGAATACCCTTGCACTATCATATGTTGAAACTAATTTTGAAAAGGGTTCTTCCTGTCAACTAG

Protein sequence

>Msa1077790

MLQNNQNTEAMTKEQKFAITKEKIKGYMEKAKTAPLNLLHNFAWQCVIAKHAPQFYSEEELAQIKKHSQLVLQETQNIPQNTVEGEVANTKKRCHPCDEGSMSYAERRMKPKTTKKVEPNKRTKPKTTRKVEPKKQDKKNLALPPPILPINVKNKIKELNGTDIRYIMSKKLFASDIDEGQNRLLMPLKEDELGFLTKTEKETLDTKDKNGKPVGLEVIVLDPYFRSFTMCFKKWRMTDKWVYSLIQNWKHAVRGNGFEIGQKLNIWSFRVKDKVPRGLKVLVVEDDDLVRMAHRDILTLLGVETHAVKNGKEALDLIGTVERKFDLILLARIMPVMDGITATKKLRDLEYPGQIVGVSRRLTNDEYAEFRNAGLDDLHHEDGIPLHYHMLKLILKRVLPVN*