Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1077790 | RHN48301.1 | 91.636 | 275 | 22 | 1 | 1 | 275 | 1 | 274 | 0.0 | 520 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1077790 | sp|Q9LSF7|Y3518_ARATH | 27.599 | 279 | 150 | 8 | 21 | 270 | 70 | 325 | 2.00e-16 | 83.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1077790 | A0A396H6Z6 | 91.636 | 275 | 22 | 1 | 1 | 275 | 1 | 274 | 0.0 | 520 |
Gene ID | Type | Classification |
---|---|---|
Msa1077790 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1077790 | MtrunA17_Chr7g0262311 | 91.636 | 275 | 22 | 1 | 1 | 275 | 1 | 274 | 0.0 | 520 |
Msa1077790 | MtrunA17_Chr5g0395781 | 50.352 | 284 | 115 | 7 | 1 | 275 | 1 | 267 | 8.59e-84 | 257 |
Msa1077790 | MtrunA17_Chr5g0395751 | 57.940 | 233 | 64 | 4 | 16 | 234 | 6 | 218 | 9.18e-70 | 219 |
Msa1077790 | MtrunA17_Chr5g0395741 | 53.365 | 208 | 74 | 4 | 71 | 275 | 118 | 305 | 1.94e-54 | 182 |
Msa1077790 | MtrunA17_Chr3g0097201 | 58.857 | 175 | 57 | 2 | 102 | 275 | 1 | 161 | 1.16e-52 | 173 |
Msa1077790 | MtrunA17_Chr3g0097211 | 67.816 | 87 | 25 | 1 | 6 | 89 | 2 | 88 | 6.52e-30 | 113 |
Msa1077790 | MtrunA17_Chr4g0033741 | 38.095 | 189 | 90 | 7 | 35 | 222 | 10 | 172 | 1.66e-23 | 96.3 |
Msa1077790 | MtrunA17_Chr5g0444241 | 37.584 | 149 | 88 | 3 | 129 | 272 | 186 | 334 | 4.04e-23 | 99.4 |
Msa1077790 | MtrunA17_Chr7g0262351 | 46.667 | 120 | 59 | 3 | 279 | 398 | 22 | 136 | 1.27e-22 | 92.8 |
Msa1077790 | MtrunA17_Chr8g0364781 | 44.554 | 101 | 53 | 2 | 279 | 377 | 12 | 111 | 7.40e-16 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1077790 | AT5G26594.1 | 38.333 | 120 | 70 | 2 | 279 | 398 | 18 | 133 | 1.82e-16 | 76.3 |
Msa1077790 | AT3G04280.1 | 40.000 | 110 | 62 | 2 | 268 | 376 | 14 | 120 | 2.08e-13 | 67.8 |
Msa1077790 | AT3G04280.2 | 40.000 | 110 | 62 | 2 | 268 | 376 | 14 | 120 | 2.08e-13 | 67.8 |
Msa1077790 | AT3G04280.3 | 40.000 | 110 | 62 | 2 | 268 | 376 | 14 | 120 | 2.08e-13 | 67.8 |
Msa1077790 | AT3G24850.1 | 30.556 | 180 | 102 | 6 | 115 | 285 | 183 | 348 | 2.85e-13 | 70.9 |
Msa1077790 | AT2G31720.1 | 32.099 | 162 | 104 | 3 | 156 | 314 | 137 | 295 | 7.29e-13 | 69.3 |
Msa1077790 | AT1G05920.1 | 31.746 | 126 | 78 | 4 | 156 | 273 | 171 | 296 | 1.56e-11 | 65.5 |
Find 82 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTCAACATTTGGTCATTT+AGG | 0.092697 | 7_2:-76612746 | Msa1077790:CDS |
TTTACAGTCTTATACAAAAT+TGG | 0.190742 | 7_2:-76612809 | Msa1077790:CDS |
GTGGCATTAAAAGACGATTT+TGG | 0.230260 | 7_2:+76612994 | None:intergenic |
AGTGGAGAATGACTGATAAA+TGG | 0.236879 | 7_2:-76612833 | Msa1077790:CDS |
TCCACCTTCTTCGTGGTCTT+TGG | 0.253725 | 7_2:+76613203 | None:intergenic |
ACTCAACATTTGGTCATTTA+GGG | 0.255771 | 7_2:-76612745 | Msa1077790:CDS |
TCCACCTTCCTCGTGGTCTT+TGG | 0.286800 | 7_2:+76613161 | None:intergenic |
ATCTTGTTCTTGACGTTAAT+AGG | 0.296823 | 7_2:+76613089 | None:intergenic |
ATTGTGAAGCTTCTAAAATA+AGG | 0.305880 | 7_2:+76612867 | None:intergenic |
TTGACGTTAATAGGTAATAT+TGG | 0.347766 | 7_2:+76613098 | None:intergenic |
CCAAGTTCGTCTTCTTTAAG+TGG | 0.388473 | 7_2:+76612975 | None:intergenic |
CGCATTGCCAAGCAAAGTTA+TGG | 0.391834 | 7_2:+76613417 | None:intergenic |
GCCCGTCATGGATGGAATTA+CGG | 0.406314 | 7_2:-76609910 | Msa1077790:intron |
CTGCATATTCATCATTAGTA+AGG | 0.410681 | 7_2:+76609606 | None:intergenic |
GTGGAGAATGACTGATAAAT+GGG | 0.417628 | 7_2:-76612832 | Msa1077790:CDS |
ACCTTCTCCATAACTTTGCT+TGG | 0.420476 | 7_2:-76613424 | Msa1077790:CDS |
AGAGATATCTTGACATTACT+TGG | 0.437895 | 7_2:-76610029 | Msa1077790:CDS |
CCACTTAAAGAAGACGAACT+TGG | 0.439642 | 7_2:-76612975 | Msa1077790:CDS |
GAATACCCTGGCCAGATTGT+TGG | 0.444431 | 7_2:-76609641 | Msa1077790:CDS |
TTGTGAAGCTTCTAAAATAA+GGG | 0.449884 | 7_2:+76612868 | None:intergenic |
AACCGTGCCAATGAGGTCTA+AGG | 0.458884 | 7_2:+76609971 | None:intergenic |
TATGCAGAATTTCGCAATGC+AGG | 0.461823 | 7_2:-76609590 | Msa1077790:CDS |
AAACATGCTGTGAGGGGAAA+TGG | 0.465819 | 7_2:-76612786 | Msa1077790:CDS |
TAAATTCGACCTCATTCTCT+TGG | 0.485891 | 7_2:-76609943 | Msa1077790:CDS |
ACAATCACTTCTAAACCAAC+CGG | 0.487692 | 7_2:+76612897 | None:intergenic |
GACGTGAGACACCAACAATC+TGG | 0.490889 | 7_2:+76609630 | None:intergenic |
GATGATCTACATCATGAAGA+TGG | 0.493143 | 7_2:-76609563 | Msa1077790:CDS |
ATTTGGTTCCACCTTCTTCG+TGG | 0.495745 | 7_2:+76613196 | None:intergenic |
CCCGCGTGGATTAAAAGTAC+TGG | 0.511605 | 7_2:-76610087 | Msa1077790:CDS |
GAGACACCAACAATCTGGCC+AGG | 0.513873 | 7_2:+76609635 | None:intergenic |
AAAGAAGCCTTAGACCTCAT+TGG | 0.516268 | 7_2:-76609978 | Msa1077790:CDS |
TCACAATGTGCTTCAAGAAG+TGG | 0.523622 | 7_2:-76612851 | Msa1077790:CDS |
AGGATCATGCCCGTCATGGA+TGG | 0.527719 | 7_2:-76609918 | Msa1077790:CDS |
AAATTTCTGTTCCTTCGTCA+TGG | 0.529500 | 7_2:+76613505 | None:intergenic |
TATCTTGACATTACTTGGTG+TGG | 0.530817 | 7_2:-76610024 | Msa1077790:CDS |
AAATTGGAAACATGCTGTGA+GGG | 0.531590 | 7_2:-76612793 | Msa1077790:CDS |
TTTCAACATATGATAGTGCA+AGG | 0.532595 | 7_2:+76609535 | None:intergenic |
AAAAGGTCATGCTAGTTGAC+AGG | 0.534345 | 7_2:+76609491 | None:intergenic |
AGGTGTCACCCATGTGATGA+AGG | 0.535873 | 7_2:-76613257 | Msa1077790:CDS |
AAGTAGCGAATACCAAGAAA+AGG | 0.536745 | 7_2:-76613277 | Msa1077790:CDS |
CATTTGGTCATTTAGGGTCA+AGG | 0.537795 | 7_2:-76612739 | Msa1077790:CDS |
TTTGCGTCAGATATCGATGA+AGG | 0.539968 | 7_2:-76613017 | Msa1077790:CDS |
GGAGAAGATCAAAGGATACA+TGG | 0.546580 | 7_2:-76613471 | Msa1077790:CDS |
ACCGTAATTCCATCCATGAC+GGG | 0.549235 | 7_2:+76609909 | None:intergenic |
ACAGAAATTTGCTATCACTA+AGG | 0.550411 | 7_2:-76613492 | Msa1077790:CDS |
GGCTAGGATCATGCCCGTCA+TGG | 0.551289 | 7_2:-76609922 | Msa1077790:CDS |
TGGATTAAAAGTACTGGTTG+TGG | 0.556379 | 7_2:-76610081 | Msa1077790:CDS |
TCGACCTCATTCTCTTGGCT+AGG | 0.556456 | 7_2:-76609938 | Msa1077790:CDS |
AACAAGATCAAGGAGTTGAA+TGG | 0.557360 | 7_2:-76613074 | Msa1077790:CDS |
TCTTCTTCAGAATAAAATTG+TGG | 0.559109 | 7_2:+76613377 | None:intergenic |
TAACGTCAAGAACAAGATCA+AGG | 0.559747 | 7_2:-76613084 | Msa1077790:CDS |
AAAGGAGACTTTAGATACAA+AGG | 0.565224 | 7_2:-76612934 | Msa1077790:CDS |
GCCAAGCAAAGTTATGGAGA+AGG | 0.574243 | 7_2:+76613423 | None:intergenic |
ATTCCACAAAACACAGTGGA+AGG | 0.576751 | 7_2:-76613302 | Msa1077790:CDS |
ACCAAAGACCACGAGGAAGG+TGG | 0.579088 | 7_2:-76613162 | Msa1077790:CDS |
ATGCAGAATTTCGCAATGCA+GGG | 0.581025 | 7_2:-76609589 | Msa1077790:CDS |
GAAACCAAAGACCACGAAGA+AGG | 0.582770 | 7_2:-76613207 | Msa1077790:CDS |
ATCACTAAGGAGAAGATCAA+AGG | 0.586998 | 7_2:-76613479 | Msa1077790:CDS |
TGATCCTAGCCAAGAGAATG+AGG | 0.588523 | 7_2:+76609934 | None:intergenic |
AACCGTAATTCCATCCATGA+CGG | 0.593130 | 7_2:+76609908 | None:intergenic |
GACATGCTACCTTCATCACA+TGG | 0.593230 | 7_2:+76613248 | None:intergenic |
TTAATAGGTAATATTGGCGG+AGG | 0.598936 | 7_2:+76613104 | None:intergenic |
TACGTTCAACCGTGCCAATG+AGG | 0.601575 | 7_2:+76609964 | None:intergenic |
GAAACCAAAGACCACGAGGA+AGG | 0.602167 | 7_2:-76613165 | Msa1077790:CDS |
ACGTTAATAGGTAATATTGG+CGG | 0.607613 | 7_2:+76613101 | None:intergenic |
AGCCTTAGACCTCATTGGCA+CGG | 0.608494 | 7_2:-76609973 | Msa1077790:CDS |
TGGTTTAGAAGTGATTGTGT+TGG | 0.618872 | 7_2:-76612892 | Msa1077790:CDS |
AGATGATGATCTTGTTCGAA+TGG | 0.623757 | 7_2:-76610057 | Msa1077790:CDS |
ACCAAAGACCACGAAGAAGG+TGG | 0.629055 | 7_2:-76613204 | Msa1077790:CDS |
TTCAACATATGATAGTGCAA+GGG | 0.630612 | 7_2:+76609536 | None:intergenic |
TTTCGGTTCCACCTTCCTCG+TGG | 0.635344 | 7_2:+76613154 | None:intergenic |
AATTGGAAACATGCTGTGAG+GGG | 0.651158 | 7_2:-76612792 | Msa1077790:CDS |
TGAAGGTAGCATGTCTTATG+CGG | 0.655262 | 7_2:-76613240 | Msa1077790:CDS |
AGACACCAACAATCTGGCCA+GGG | 0.657108 | 7_2:+76609636 | None:intergenic |
AAATACTGAAGCCATGACGA+AGG | 0.663599 | 7_2:-76613516 | Msa1077790:CDS |
AAAATTGGAAACATGCTGTG+AGG | 0.670199 | 7_2:-76612794 | Msa1077790:CDS |
AAGTTATGGAGAAGGTTGAG+TGG | 0.683312 | 7_2:+76613431 | None:intergenic |
GAACGAAACCAAAGACCACG+AGG | 0.685629 | 7_2:-76613169 | Msa1077790:CDS |
CTGCGCGATTTAGAATACCC+TGG | 0.695519 | 7_2:-76609653 | Msa1077790:CDS |
ACATGCTACCTTCATCACAT+GGG | 0.704522 | 7_2:+76613249 | None:intergenic |
AAATATTCCACAAAACACAG+TGG | 0.735384 | 7_2:-76613306 | Msa1077790:CDS |
TATCATCACAGAGTCCCGCG+TGG | 0.741838 | 7_2:-76610101 | Msa1077790:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTATCTATTATGTTT+TGG | - | chr7_2:76611455-76611474 | Msa1077790:intron | 10.0% |
!! | TGAAAAAAAAAAGTAAAAAA+AGG | + | chr7_2:76612348-76612367 | None:intergenic | 10.0% |
!!! | TTTTTCTTATCTTGTTTTTT+CGG | + | chr7_2:76609901-76609920 | None:intergenic | 15.0% |
!! | AAAACAAGATAAGAAAAATT+TGG | - | chr7_2:76609903-76609922 | Msa1077790:intron | 15.0% |
!!! | TGTATGATTTTCTTTTTAAA+AGG | - | chr7_2:76610821-76610840 | Msa1077790:intron | 15.0% |
!! | TCAAAACTTATAGATTAAAA+AGG | + | chr7_2:76611260-76611279 | None:intergenic | 15.0% |
!!! | AAATTTGTCACAAATTTTAT+AGG | + | chr7_2:76611570-76611589 | None:intergenic | 15.0% |
!! | TTACAAATATTTCAAAATGA+AGG | + | chr7_2:76611666-76611685 | None:intergenic | 15.0% |
!!! | TTCATTTTGAAATATTTGTA+AGG | - | chr7_2:76611665-76611684 | Msa1077790:intron | 15.0% |
!! | ATGTAAATTAGAGATATATT+TGG | + | chr7_2:76611953-76611972 | None:intergenic | 15.0% |
!! | ATTTATATCTAAGAATTAGA+GGG | + | chr7_2:76612497-76612516 | None:intergenic | 15.0% |
!! | TATTTATATCTAAGAATTAG+AGG | + | chr7_2:76612498-76612517 | None:intergenic | 15.0% |
!! | TTAGATACAAAGGATAAAAA+CGG | - | chr7_2:76610111-76610130 | Msa1077790:intron | 20.0% |
!!! | TTTACAGTCTTATACAAAAT+TGG | - | chr7_2:76610226-76610245 | Msa1077790:intron | 20.0% |
!! | CTTTGTACTCAAAATTAATT+AGG | - | chr7_2:76610329-76610348 | Msa1077790:intron | 20.0% |
!! | ATATAGAAAAACAAATTCCT+AGG | + | chr7_2:76610473-76610492 | None:intergenic | 20.0% |
!! | TTGATAAAAAGACCAATATT+AGG | + | chr7_2:76610792-76610811 | None:intergenic | 20.0% |
!!! | ATTTATCTATTATGTTTTGG+TGG | - | chr7_2:76611458-76611477 | Msa1077790:intron | 20.0% |
!!! | TTTATCTATTATGTTTTGGT+GGG | - | chr7_2:76611459-76611478 | Msa1077790:intron | 20.0% |
!! | AATATTTCAAAATGAAGGTA+CGG | + | chr7_2:76611661-76611680 | None:intergenic | 20.0% |
!!! | TATTTTATGGACTAACAATT+TGG | - | chr7_2:76612222-76612241 | Msa1077790:intron | 20.0% |
!! | ATAGAAAATCAAGATTGAAA+AGG | + | chr7_2:76612863-76612882 | None:intergenic | 20.0% |
!!! | ATTGCTTTAAACTAATTCAT+GGG | + | chr7_2:76613206-76613225 | None:intergenic | 20.0% |
!!! | AATTGCTTTAAACTAATTCA+TGG | + | chr7_2:76613207-76613226 | None:intergenic | 20.0% |
!! | ATTATGAATGATTATATGCT+AGG | + | chr7_2:76613311-76613330 | None:intergenic | 20.0% |
!!! | TGTTGAAACTAATTTTGAAA+AGG | - | chr7_2:76613515-76613534 | Msa1077790:CDS | 20.0% |
!!! | GTTGAAACTAATTTTGAAAA+GGG | - | chr7_2:76613516-76613535 | Msa1077790:CDS | 20.0% |
! | ATACATGGAAAAAGCAAAAA+CGG | - | chr7_2:76609579-76609598 | Msa1077790:CDS | 25.0% |
! | TCTTCTTCAGAATAAAATTG+TGG | + | chr7_2:76609661-76609680 | None:intergenic | 25.0% |
!!! | TTTGGTTTCGTTCTTTTATT+TGG | + | chr7_2:76609859-76609878 | None:intergenic | 25.0% |
! | TTGACGTTAATAGGTAATAT+TGG | + | chr7_2:76609940-76609959 | None:intergenic | 25.0% |
!!! | TTGTGAAGCTTCTAAAATAA+GGG | + | chr7_2:76610170-76610189 | None:intergenic | 25.0% |
!!! | ATTGTGAAGCTTCTAAAATA+AGG | + | chr7_2:76610171-76610190 | None:intergenic | 25.0% |
!!! | CAAAACACCAAACTTTTTTA+AGG | - | chr7_2:76610635-76610654 | Msa1077790:intron | 25.0% |
! | GAAAGATCCTTAAAAAAGTT+TGG | + | chr7_2:76610645-76610664 | None:intergenic | 25.0% |
!! | GGACAAAATATTTTCTTACT+AGG | - | chr7_2:76610742-76610761 | Msa1077790:intron | 25.0% |
! | TAGCAGGAAGAATTATTATA+TGG | - | chr7_2:76611104-76611123 | Msa1077790:intron | 25.0% |
!! | ATTATTTTCCTTGATCATGT+TGG | - | chr7_2:76611233-76611252 | Msa1077790:intron | 25.0% |
! | GTCTGTGATAAAATCATTTA+TGG | - | chr7_2:76611325-76611344 | Msa1077790:intron | 25.0% |
!!! | ATATGCAAGGTTTTAAAAAC+CGG | - | chr7_2:76611740-76611759 | Msa1077790:intron | 25.0% |
! | ATAGAGCACAGTTTAAATTT+CGG | + | chr7_2:76612149-76612168 | None:intergenic | 25.0% |
!! | TTAGGAAAGTAAGAATTTTG+AGG | + | chr7_2:76612251-76612270 | None:intergenic | 25.0% |
! | ATTAGAGGGTAAATTTAGAT+AGG | + | chr7_2:76612483-76612502 | None:intergenic | 25.0% |
! | ATTACAAGATTTCAAGATGA+TGG | + | chr7_2:76612637-76612656 | None:intergenic | 25.0% |
! | GTATCAAGATAAAGATATAG+AGG | + | chr7_2:76612664-76612683 | None:intergenic | 25.0% |
! | AAACAGAACTGTAGTAATTA+AGG | - | chr7_2:76612886-76612905 | Msa1077790:CDS | 25.0% |
! | TACATACATACATACATACA+CGG | - | chr7_2:76613165-76613184 | Msa1077790:CDS | 25.0% |
!! | ACAGAAATTTGCTATCACTA+AGG | - | chr7_2:76609543-76609562 | Msa1077790:CDS | 30.0% |
!!! | GTGGAATATTTTGAGTTTCT+TGG | + | chr7_2:76609720-76609739 | None:intergenic | 30.0% |
AAATATTCCACAAAACACAG+TGG | - | chr7_2:76609729-76609748 | Msa1077790:intron | 30.0% | |
ACGTTAATAGGTAATATTGG+CGG | + | chr7_2:76609937-76609956 | None:intergenic | 30.0% | |
ATCTTGTTCTTGACGTTAAT+AGG | + | chr7_2:76609949-76609968 | None:intergenic | 30.0% | |
AAAGGAGACTTTAGATACAA+AGG | - | chr7_2:76610101-76610120 | Msa1077790:intron | 30.0% | |
AAAGGATAAAAACGGTAAAC+CGG | - | chr7_2:76610119-76610138 | Msa1077790:intron | 30.0% | |
TAGGTCAAAAACTCAACATT+TGG | - | chr7_2:76610280-76610299 | Msa1077790:intron | 30.0% | |
AACTCAACATTTGGTCATTT+AGG | - | chr7_2:76610289-76610308 | Msa1077790:intron | 30.0% | |
ACTCAACATTTGGTCATTTA+GGG | - | chr7_2:76610290-76610309 | Msa1077790:intron | 30.0% | |
TACTTCTCTGTATCAATGTA+TGG | - | chr7_2:76610575-76610594 | Msa1077790:intron | 30.0% | |
TTTCCCTTTATGCCTAATAT+TGG | - | chr7_2:76610777-76610796 | Msa1077790:intron | 30.0% | |
AGACCAATATTAGGCATAAA+GGG | + | chr7_2:76610783-76610802 | None:intergenic | 30.0% | |
AAGACCAATATTAGGCATAA+AGG | + | chr7_2:76610784-76610803 | None:intergenic | 30.0% | |
TTATAGCACACTCAATAAAC+AGG | + | chr7_2:76610929-76610948 | None:intergenic | 30.0% | |
! | TATGGTCTTCAATTTGCTTA+TGG | - | chr7_2:76611122-76611141 | Msa1077790:intron | 30.0% |
AAATAATGTAGAGTCACCTA+AGG | + | chr7_2:76611220-76611239 | None:intergenic | 30.0% | |
AACTTAGTCTCATACATTCA+AGG | + | chr7_2:76611402-76611421 | None:intergenic | 30.0% | |
AGTCTCAAAGATTACGAATT+TGG | + | chr7_2:76611534-76611553 | None:intergenic | 30.0% | |
! | TTGAGCTGATTCAATTTGAT+TGG | - | chr7_2:76611603-76611622 | Msa1077790:intron | 30.0% |
ACATAATCAAAATCACAGCT+AGG | + | chr7_2:76611696-76611715 | None:intergenic | 30.0% | |
AAAACCTTGCATATGATAGA+AGG | + | chr7_2:76611734-76611753 | None:intergenic | 30.0% | |
! | AACAACTTACCTTTTTGTTG+CGG | + | chr7_2:76611785-76611804 | None:intergenic | 30.0% |
! | TATTTGGAGTCTTAAACTAG+AGG | + | chr7_2:76611937-76611956 | None:intergenic | 30.0% |
ACTTGTATACTCAATGTTGT+CGG | + | chr7_2:76612172-76612191 | None:intergenic | 30.0% | |
!!! | CAACTGTGTGACTTATTTTA+TGG | - | chr7_2:76612209-76612228 | Msa1077790:intron | 30.0% |
TTCCTAACTTCAAACTTAGT+TGG | - | chr7_2:76612264-76612283 | Msa1077790:intron | 30.0% | |
! | TACCAACTAAGTTTGAAGTT+AGG | + | chr7_2:76612269-76612288 | None:intergenic | 30.0% |
! | TTGAAGTTCCTCTATGATTT+TGG | - | chr7_2:76612306-76612325 | Msa1077790:intron | 30.0% |
!!! | AGTTAGTTGGTTATTTTGGT+TGG | + | chr7_2:76612383-76612402 | None:intergenic | 30.0% |
! | AGTCAGTTAGTTGGTTATTT+TGG | + | chr7_2:76612387-76612406 | None:intergenic | 30.0% |
AATAAAGTGAGTCAGTTAGT+TGG | + | chr7_2:76612396-76612415 | None:intergenic | 30.0% | |
! | GATAGGTAGAAATTGACTTT+GGG | + | chr7_2:76612466-76612485 | None:intergenic | 30.0% |
! | AGATAGGTAGAAATTGACTT+TGG | + | chr7_2:76612467-76612486 | None:intergenic | 30.0% |
AGAACAAACTCTTATTCTGT+GGG | + | chr7_2:76612589-76612608 | None:intergenic | 30.0% | |
CTGTAGTAATTAAGGCATAA+TGG | - | chr7_2:76612894-76612913 | Msa1077790:CDS | 30.0% | |
AGAGATATCTTGACATTACT+TGG | - | chr7_2:76613006-76613025 | Msa1077790:CDS | 30.0% | |
ATGAACAGAAAGAAAATGCA+TGG | - | chr7_2:76613269-76613288 | Msa1077790:CDS | 30.0% | |
TGAACAGAAAGAAAATGCAT+GGG | - | chr7_2:76613270-76613289 | Msa1077790:CDS | 30.0% | |
CTGCATATTCATCATTAGTA+AGG | + | chr7_2:76613432-76613451 | None:intergenic | 30.0% | |
! | TTCAACATATGATAGTGCAA+GGG | + | chr7_2:76613502-76613521 | None:intergenic | 30.0% |
! | TTTCAACATATGATAGTGCA+AGG | + | chr7_2:76613503-76613522 | None:intergenic | 30.0% |
AAATTTCTGTTCCTTCGTCA+TGG | + | chr7_2:76609533-76609552 | None:intergenic | 35.0% | |
ATCACTAAGGAGAAGATCAA+AGG | - | chr7_2:76609556-76609575 | Msa1077790:CDS | 35.0% | |
AAGTAGCGAATACCAAGAAA+AGG | - | chr7_2:76609758-76609777 | Msa1077790:intron | 35.0% | |
TTAATAGGTAATATTGGCGG+AGG | + | chr7_2:76609934-76609953 | None:intergenic | 35.0% | |
TAACGTCAAGAACAAGATCA+AGG | - | chr7_2:76609951-76609970 | Msa1077790:CDS | 35.0% | |
AACAAGATCAAGGAGTTGAA+TGG | - | chr7_2:76609961-76609980 | Msa1077790:CDS | 35.0% | |
! | GTGGCATTAAAAGACGATTT+TGG | + | chr7_2:76610044-76610063 | None:intergenic | 35.0% |
! | TTTTCTCACCAAGACAGAAA+AGG | - | chr7_2:76610083-76610102 | Msa1077790:CDS | 35.0% |
! | TAAAGTCTCCTTTTCTGTCT+TGG | + | chr7_2:76610094-76610113 | None:intergenic | 35.0% |
ACAATCACTTCTAAACCAAC+CGG | + | chr7_2:76610141-76610160 | None:intergenic | 35.0% | |
TGGTTTAGAAGTGATTGTGT+TGG | - | chr7_2:76610143-76610162 | Msa1077790:intron | 35.0% | |
AGTGGAGAATGACTGATAAA+TGG | - | chr7_2:76610202-76610221 | Msa1077790:intron | 35.0% | |
GTGGAGAATGACTGATAAAT+GGG | - | chr7_2:76610203-76610222 | Msa1077790:intron | 35.0% | |
AAAATTGGAAACATGCTGTG+AGG | - | chr7_2:76610241-76610260 | Msa1077790:intron | 35.0% | |
AAATTGGAAACATGCTGTGA+GGG | - | chr7_2:76610242-76610261 | Msa1077790:intron | 35.0% | |
!!! | AGGGGAAATGGTTTTGAAAT+AGG | - | chr7_2:76610261-76610280 | Msa1077790:intron | 35.0% |
! | GTACTTTGTTTATGCGTTTC+TGG | - | chr7_2:76610393-76610412 | Msa1077790:intron | 35.0% |
! | CAGTTTTTGCTCTCTTTCAT+TGG | - | chr7_2:76610497-76610516 | Msa1077790:intron | 35.0% |
! | TAAGGATCTTTCCTTTTGTG+AGG | - | chr7_2:76610653-76610672 | Msa1077790:intron | 35.0% |
ATGCAATCAAACCTCACAAA+AGG | + | chr7_2:76610667-76610686 | None:intergenic | 35.0% | |
ATCAGTTCAGAATCTTTACC+TGG | - | chr7_2:76610699-76610718 | Msa1077790:intron | 35.0% | |
TAGTATGTGTCAAGTTCTGT+TGG | - | chr7_2:76610875-76610894 | Msa1077790:intron | 35.0% | |
AATCTCCAGTTTCATATGCA+GGG | - | chr7_2:76611056-76611075 | Msa1077790:intron | 35.0% | |
! | GACAACTTGTTCTAAGTAGT+TGG | - | chr7_2:76611144-76611163 | Msa1077790:intron | 35.0% |
CAATTTGACTATGACACCTT+AGG | - | chr7_2:76611201-76611220 | Msa1077790:intron | 35.0% | |
AAAAAGGACCAACATGATCA+AGG | + | chr7_2:76611244-76611263 | None:intergenic | 35.0% | |
! | TTTTCTCAAAACATTCGCAG+TGG | - | chr7_2:76611350-76611369 | Msa1077790:intron | 35.0% |
AGTCTCATACATTCAAGGAT+GGG | + | chr7_2:76611397-76611416 | None:intergenic | 35.0% | |
TAGTCTCATACATTCAAGGA+TGG | + | chr7_2:76611398-76611417 | None:intergenic | 35.0% | |
TTTGGTGGGATATAAGTGTT+TGG | - | chr7_2:76611473-76611492 | Msa1077790:intron | 35.0% | |
! | CATTGACACAAAGACGATTT+TGG | + | chr7_2:76611504-76611523 | None:intergenic | 35.0% |
ATCGTCTTTGTGTCAATGTT+AGG | - | chr7_2:76611506-76611525 | Msa1077790:intron | 35.0% | |
TCGTCTTTGTGTCAATGTTA+GGG | - | chr7_2:76611507-76611526 | Msa1077790:intron | 35.0% | |
! | TAACCACTAGCTTAAATGCT+TGG | + | chr7_2:76611636-76611655 | None:intergenic | 35.0% |
ATGATAGAAGGAACATGGAA+TGG | + | chr7_2:76611722-76611741 | None:intergenic | 35.0% | |
TGCATATGATAGAAGGAACA+TGG | + | chr7_2:76611727-76611746 | None:intergenic | 35.0% | |
TGTTCCTTCTATCATATGCA+AGG | - | chr7_2:76611727-76611746 | Msa1077790:intron | 35.0% | |
! | TTTTGTTGCGGCATTTTTCT+CGG | + | chr7_2:76611773-76611792 | None:intergenic | 35.0% |
AGAAAAATGCCGCAACAAAA+AGG | - | chr7_2:76611773-76611792 | Msa1077790:intron | 35.0% | |
AAACTAGAGGAAGAGTCTAA+AGG | + | chr7_2:76611924-76611943 | None:intergenic | 35.0% | |
AACTGCTTCCAAAATCATAG+AGG | + | chr7_2:76612317-76612336 | None:intergenic | 35.0% | |
GAGAACAAACTCTTATTCTG+TGG | + | chr7_2:76612590-76612609 | None:intergenic | 35.0% | |
! | ATAAGAGTTTGTTCTCCACA+AGG | - | chr7_2:76612594-76612613 | Msa1077790:intron | 35.0% |
GAAAGAACTCTTGATTACGT+GGG | + | chr7_2:76612758-76612777 | None:intergenic | 35.0% | |
AGAAAGAACTCTTGATTACG+TGG | + | chr7_2:76612759-76612778 | None:intergenic | 35.0% | |
!! | TGGATTAAAAGTACTGGTTG+TGG | - | chr7_2:76612954-76612973 | Msa1077790:CDS | 35.0% |
AGATGATGATCTTGTTCGAA+TGG | - | chr7_2:76612978-76612997 | Msa1077790:CDS | 35.0% | |
! | TATCTTGACATTACTTGGTG+TGG | - | chr7_2:76613011-76613030 | Msa1077790:CDS | 35.0% |
TAAATTCGACCTCATTCTCT+TGG | - | chr7_2:76613092-76613111 | Msa1077790:CDS | 35.0% | |
GAACAGAAAGAAAATGCATG+GGG | - | chr7_2:76613271-76613290 | Msa1077790:CDS | 35.0% | |
GATGATCTACATCATGAAGA+TGG | - | chr7_2:76613472-76613491 | Msa1077790:CDS | 35.0% | |
AAATACTGAAGCCATGACGA+AGG | - | chr7_2:76609519-76609538 | Msa1077790:CDS | 40.0% | |
GGAGAAGATCAAAGGATACA+TGG | - | chr7_2:76609564-76609583 | Msa1077790:CDS | 40.0% | |
AAGTTATGGAGAAGGTTGAG+TGG | + | chr7_2:76609607-76609626 | None:intergenic | 40.0% | |
ACCTTCTCCATAACTTTGCT+TGG | - | chr7_2:76609611-76609630 | Msa1077790:CDS | 40.0% | |
ATTCCACAAAACACAGTGGA+AGG | - | chr7_2:76609733-76609752 | Msa1077790:intron | 40.0% | |
ACATGCTACCTTCATCACAT+GGG | + | chr7_2:76609789-76609808 | None:intergenic | 40.0% | |
TGAAGGTAGCATGTCTTATG+CGG | - | chr7_2:76609795-76609814 | Msa1077790:intron | 40.0% | |
TTTGCGTCAGATATCGATGA+AGG | - | chr7_2:76610018-76610037 | Msa1077790:CDS | 40.0% | |
CCAAGTTCGTCTTCTTTAAG+TGG | + | chr7_2:76610063-76610082 | None:intergenic | 40.0% | |
CCACTTAAAGAAGACGAACT+TGG | - | chr7_2:76610060-76610079 | Msa1077790:CDS | 40.0% | |
GATAAAAACGGTAAACCGGT+TGG | - | chr7_2:76610123-76610142 | Msa1077790:intron | 40.0% | |
TCACAATGTGCTTCAAGAAG+TGG | - | chr7_2:76610184-76610203 | Msa1077790:intron | 40.0% | |
AATTGGAAACATGCTGTGAG+GGG | - | chr7_2:76610243-76610262 | Msa1077790:intron | 40.0% | |
! | CATTTGGTCATTTAGGGTCA+AGG | - | chr7_2:76610296-76610315 | Msa1077790:intron | 40.0% |
!! | TGTTTATGCGTTTCTGGCTT+TGG | - | chr7_2:76610399-76610418 | Msa1077790:intron | 40.0% |
CTAATACAGCACATGAACAG+GGG | + | chr7_2:76610438-76610457 | None:intergenic | 40.0% | |
GCTAATACAGCACATGAACA+GGG | + | chr7_2:76610439-76610458 | None:intergenic | 40.0% | |
TGCTAATACAGCACATGAAC+AGG | + | chr7_2:76610440-76610459 | None:intergenic | 40.0% | |
TGTGCTGTATTAGCATGAGA+AGG | - | chr7_2:76610445-76610464 | Msa1077790:intron | 40.0% | |
ATTAGCATGAGAAGGAACCT+AGG | - | chr7_2:76610453-76610472 | Msa1077790:intron | 40.0% | |
! | AGTCTAGAACTTGTGTTACC+AGG | + | chr7_2:76610720-76610739 | None:intergenic | 40.0% |
!! | GTAACACAAGTTCTAGACTC+TGG | - | chr7_2:76610721-76610740 | Msa1077790:intron | 40.0% |
AGCACACTCAATAAACAGGA+TGG | + | chr7_2:76610925-76610944 | None:intergenic | 40.0% | |
GATTCTCTTGCAACTACTTC+AGG | + | chr7_2:76611040-76611059 | None:intergenic | 40.0% | |
GAATCTCCAGTTTCATATGC+AGG | - | chr7_2:76611055-76611074 | Msa1077790:intron | 40.0% | |
ATCTCCAGTTTCATATGCAG+GGG | - | chr7_2:76611057-76611076 | Msa1077790:intron | 40.0% | |
ACTATTGAAGTTGCTGCTAG+TGG | + | chr7_2:76611085-76611104 | None:intergenic | 40.0% | |
TCATACATTCAAGGATGGGA+AGG | + | chr7_2:76611393-76611412 | None:intergenic | 40.0% | |
! | TGACACAAAGACGATTTTGG+TGG | + | chr7_2:76611501-76611520 | None:intergenic | 40.0% |
TTGCCAAGCATTTAAGCTAG+TGG | - | chr7_2:76611630-76611649 | Msa1077790:intron | 40.0% | |
! | CATTTTTCTCGGTAATTGGC+CGG | + | chr7_2:76611762-76611781 | None:intergenic | 40.0% |
GCTGTAAAAATGGGGGAAAA+CGG | + | chr7_2:76611809-76611828 | None:intergenic | 40.0% | |
TTTCGTCGCGCTGTAAAAAT+GGG | + | chr7_2:76611818-76611837 | None:intergenic | 40.0% | |
ATTTCGTCGCGCTGTAAAAA+TGG | + | chr7_2:76611819-76611838 | None:intergenic | 40.0% | |
! | CGAAATTTTATACGCGATCG+CGG | - | chr7_2:76612111-76612130 | Msa1077790:intron | 40.0% |
TTAAATTTCGGTCCCAGTCA+AGG | + | chr7_2:76612137-76612156 | None:intergenic | 40.0% | |
GAGTTCTTTCTTTCTCCACA+AGG | - | chr7_2:76612768-76612787 | Msa1077790:CDS | 40.0% | |
! | ACCAGTACTTTTAATCCACG+CGG | + | chr7_2:76612952-76612971 | None:intergenic | 40.0% |
GAAACTCACGCAGTCAAAAA+TGG | - | chr7_2:76613033-76613052 | Msa1077790:CDS | 40.0% | |
AAAGAAGCCTTAGACCTCAT+TGG | - | chr7_2:76613057-76613076 | Msa1077790:CDS | 40.0% | |
AACCGTAATTCCATCCATGA+CGG | + | chr7_2:76613130-76613149 | None:intergenic | 40.0% | |
TATGCAGAATTTCGCAATGC+AGG | - | chr7_2:76613445-76613464 | Msa1077790:CDS | 40.0% | |
ATGCAGAATTTCGCAATGCA+GGG | - | chr7_2:76613446-76613465 | Msa1077790:CDS | 40.0% | |
GCCAAGCAAAGTTATGGAGA+AGG | + | chr7_2:76609615-76609634 | None:intergenic | 45.0% | |
CGCATTGCCAAGCAAAGTTA+TGG | + | chr7_2:76609621-76609640 | None:intergenic | 45.0% | |
! | TCTCCTTCCACTGTGTTTTG+TGG | + | chr7_2:76609739-76609758 | None:intergenic | 45.0% |
! | ACATGGGTGACACCTTTTCT+TGG | + | chr7_2:76609773-76609792 | None:intergenic | 45.0% |
GACATGCTACCTTCATCACA+TGG | + | chr7_2:76609790-76609809 | None:intergenic | 45.0% | |
GAAACCAAAGACCACGAAGA+AGG | - | chr7_2:76609828-76609847 | Msa1077790:intron | 45.0% | |
! | ATTTGGTTCCACCTTCTTCG+TGG | + | chr7_2:76609842-76609861 | None:intergenic | 45.0% |
AAACATGCTGTGAGGGGAAA+TGG | - | chr7_2:76610249-76610268 | Msa1077790:intron | 45.0% | |
!!! | TGCGTTTCTGGCTTTGGTTT+TGG | - | chr7_2:76610405-76610424 | Msa1077790:intron | 45.0% |
GCAGCAACTTCAATAGTAGC+AGG | - | chr7_2:76611088-76611107 | Msa1077790:intron | 45.0% | |
ATGGGAAGGCTAAAGCTCAT+AGG | + | chr7_2:76611379-76611398 | None:intergenic | 45.0% | |
! | GCGGCATTTTTCTCGGTAAT+TGG | + | chr7_2:76611766-76611785 | None:intergenic | 45.0% |
TTCGTCGCGCTGTAAAAATG+GGG | + | chr7_2:76611817-76611836 | None:intergenic | 45.0% | |
AGCGCGACGAAATATCGTTA+TGG | - | chr7_2:76611826-76611845 | Msa1077790:intron | 45.0% | |
GCGCGACGAAATATCGTTAT+GGG | - | chr7_2:76611827-76611846 | Msa1077790:intron | 45.0% | |
ATGCAGTTGTACTTGCCTTG+TGG | + | chr7_2:76612612-76612631 | None:intergenic | 45.0% | |
! | CCAGTACTTTTAATCCACGC+GGG | + | chr7_2:76612951-76612970 | None:intergenic | 45.0% |
TGATCCTAGCCAAGAGAATG+AGG | + | chr7_2:76613104-76613123 | None:intergenic | 45.0% | |
ACCGTAATTCCATCCATGAC+GGG | + | chr7_2:76613129-76613148 | None:intergenic | 45.0% | |
GTCATGGATGGAATTACGGT+TGG | - | chr7_2:76613129-76613148 | Msa1077790:CDS | 45.0% | |
CATTCATATGTGTGCACTGC+AGG | - | chr7_2:76613348-76613367 | Msa1077790:CDS | 45.0% | |
! | AGGTGTCACCCATGTGATGA+AGG | - | chr7_2:76609778-76609797 | Msa1077790:intron | 50.0% |
ACCAAAGACCACGAAGAAGG+TGG | - | chr7_2:76609831-76609850 | Msa1077790:intron | 50.0% | |
TCCACCTTCTTCGTGGTCTT+TGG | + | chr7_2:76609835-76609854 | None:intergenic | 50.0% | |
GAACGAAACCAAAGACCACG+AGG | - | chr7_2:76609866-76609885 | Msa1077790:intron | 50.0% | |
GAAACCAAAGACCACGAGGA+AGG | - | chr7_2:76609870-76609889 | Msa1077790:intron | 50.0% | |
TCGTCGCGCTGTAAAAATGG+GGG | + | chr7_2:76611816-76611835 | None:intergenic | 50.0% | |
GTCGCAGATTTCGCGATTTC+AGG | + | chr7_2:76612050-76612069 | None:intergenic | 50.0% | |
TTGCAGTAGCACTTGCCTTG+TGG | + | chr7_2:76612786-76612805 | None:intergenic | 50.0% | |
GGGACTCTGTGATGATATGG+AGG | + | chr7_2:76612931-76612950 | None:intergenic | 50.0% | |
! | CCCGCGTGGATTAAAAGTAC+TGG | - | chr7_2:76612948-76612967 | Msa1077790:CDS | 50.0% |
AGCCTTAGACCTCATTGGCA+CGG | - | chr7_2:76613062-76613081 | Msa1077790:CDS | 50.0% | |
AACCGTGCCAATGAGGTCTA+AGG | + | chr7_2:76613067-76613086 | None:intergenic | 50.0% | |
TACGTTCAACCGTGCCAATG+AGG | + | chr7_2:76613074-76613093 | None:intergenic | 50.0% | |
TCGACCTCATTCTCTTGGCT+AGG | - | chr7_2:76613097-76613116 | Msa1077790:CDS | 50.0% | |
GCCCGTCATGGATGGAATTA+CGG | - | chr7_2:76613125-76613144 | Msa1077790:CDS | 50.0% | |
! | CTGCGCGATTTAGAATACCC+TGG | - | chr7_2:76613382-76613401 | Msa1077790:CDS | 50.0% |
GAATACCCTGGCCAGATTGT+TGG | - | chr7_2:76613394-76613413 | Msa1077790:CDS | 50.0% | |
AGACACCAACAATCTGGCCA+GGG | + | chr7_2:76613402-76613421 | None:intergenic | 50.0% | |
GACGTGAGACACCAACAATC+TGG | + | chr7_2:76613408-76613427 | None:intergenic | 50.0% | |
ACCAAAGACCACGAGGAAGG+TGG | - | chr7_2:76609873-76609892 | Msa1077790:intron | 55.0% | |
TCCACCTTCCTCGTGGTCTT+TGG | + | chr7_2:76609877-76609896 | None:intergenic | 55.0% | |
TTTCGGTTCCACCTTCCTCG+TGG | + | chr7_2:76609884-76609903 | None:intergenic | 55.0% | |
GGCACCCCTGCATATGAAAC+TGG | + | chr7_2:76611064-76611083 | None:intergenic | 55.0% | |
CGCGGGACTCTGTGATGATA+TGG | + | chr7_2:76612934-76612953 | None:intergenic | 55.0% | |
TATCATCACAGAGTCCCGCG+TGG | - | chr7_2:76612934-76612953 | Msa1077790:CDS | 55.0% | |
AGGATCATGCCCGTCATGGA+TGG | - | chr7_2:76613117-76613136 | Msa1077790:CDS | 55.0% | |
GAGACACCAACAATCTGGCC+AGG | + | chr7_2:76613403-76613422 | None:intergenic | 55.0% | |
GGCTAGGATCATGCCCGTCA+TGG | - | chr7_2:76613113-76613132 | Msa1077790:CDS | 60.0% | |
TACGCGATCGCGGCCTTGAC+TGG | - | chr7_2:76612121-76612140 | Msa1077790:intron | 65.0% | |
ACGCGATCGCGGCCTTGACT+GGG | - | chr7_2:76612122-76612141 | Msa1077790:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 76609502 | 76613555 | 76609502 | ID=Msa1077790;Name=Msa1077790 |
chr7_2 | mRNA | 76609502 | 76613555 | 76609502 | ID=Msa1077790-mRNA-1;Parent=Msa1077790;Name=Msa1077790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|402 |
chr7_2 | exon | 76612735 | 76613555 | 76612735 | ID=Msa1077790-mRNA-1:exon:18528;Parent=Msa1077790-mRNA-1 |
chr7_2 | exon | 76609911 | 76610112 | 76609911 | ID=Msa1077790-mRNA-1:exon:18527;Parent=Msa1077790-mRNA-1 |
chr7_2 | exon | 76609502 | 76609687 | 76609502 | ID=Msa1077790-mRNA-1:exon:18526;Parent=Msa1077790-mRNA-1 |
chr7_2 | CDS | 76612735 | 76613555 | 76612735 | ID=Msa1077790-mRNA-1:cds;Parent=Msa1077790-mRNA-1 |
chr7_2 | CDS | 76609911 | 76610112 | 76609911 | ID=Msa1077790-mRNA-1:cds;Parent=Msa1077790-mRNA-1 |
chr7_2 | CDS | 76609502 | 76609687 | 76609502 | ID=Msa1077790-mRNA-1:cds;Parent=Msa1077790-mRNA-1 |
Gene Sequence |
Protein sequence |