Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078220 | XP_003625472.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.30e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078220 | sp|F4JZT3|ARR24_ARATH | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.28e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078220 | G7KZK5 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.10e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1078220 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078220 | MtrunA17_Chr8g0364781 | 67.442 | 129 | 39 | 2 | 1 | 126 | 1 | 129 | 9.38e-55 | 168 |
| Msa1078220 | MtrunA17_Chr7g0262671 | 94.805 | 77 | 4 | 0 | 1 | 77 | 1 | 77 | 1.93e-49 | 153 |
| Msa1078220 | MtrunA17_Chr7g0262351 | 59.200 | 125 | 50 | 1 | 5 | 129 | 16 | 139 | 7.51e-46 | 145 |
| Msa1078220 | MtrunA17_Chr7g0262681 | 93.548 | 62 | 4 | 0 | 69 | 130 | 5 | 66 | 7.57e-37 | 120 |
| Msa1078220 | MtrunA17_Chr6g0472261 | 54.054 | 74 | 34 | 0 | 4 | 77 | 3 | 76 | 1.11e-21 | 82.0 |
| Msa1078220 | MtrunA17_Chr6g0451941 | 34.211 | 114 | 75 | 0 | 11 | 124 | 33 | 146 | 2.47e-18 | 75.9 |
| Msa1078220 | MtrunA17_Chr8g0392301 | 27.820 | 133 | 79 | 1 | 14 | 129 | 864 | 996 | 1.38e-12 | 63.5 |
| Msa1078220 | MtrunA17_Chr5g0447641 | 41.791 | 67 | 39 | 0 | 14 | 80 | 1077 | 1143 | 1.22e-11 | 60.8 |
| Msa1078220 | MtrunA17_Chr8g0371601 | 30.597 | 134 | 72 | 3 | 11 | 123 | 1029 | 1162 | 1.74e-11 | 60.1 |
| Msa1078220 | MtrunA17_Chr5g0405701 | 30.000 | 150 | 74 | 4 | 11 | 129 | 1050 | 1199 | 7.46e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078220 | AT5G26594.1 | 63.025 | 119 | 44 | 0 | 9 | 127 | 16 | 134 | 1.30e-48 | 152 |
| Msa1078220 | AT3G04280.1 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1078220 | AT3G04280.2 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1078220 | AT3G04280.3 | 46.789 | 109 | 56 | 2 | 11 | 117 | 22 | 130 | 6.63e-26 | 95.1 |
| Msa1078220 | AT2G01830.5 | 30.657 | 137 | 82 | 2 | 2 | 125 | 922 | 1058 | 4.61e-13 | 65.1 |
| Msa1078220 | AT2G01830.2 | 30.657 | 137 | 82 | 2 | 2 | 125 | 933 | 1069 | 5.04e-13 | 65.1 |
| Msa1078220 | AT2G01830.1 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1078220 | AT2G01830.4 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1078220 | AT2G01830.6 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1078220 | AT2G01830.3 | 30.657 | 137 | 82 | 2 | 2 | 125 | 910 | 1046 | 5.28e-13 | 65.1 |
| Msa1078220 | AT5G35750.1 | 28.889 | 135 | 74 | 2 | 14 | 126 | 1038 | 1172 | 1.63e-12 | 63.5 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGATGTTGAATAAATT+TGG | 0.144966 | 7_2:-77082651 | Msa1078220:CDS |
| GCAATACTTAGTTCCATTCT+TGG | 0.228362 | 7_2:-77081300 | Msa1078220:CDS |
| TATCCATGTCCATGAGAATT+AGG | 0.311699 | 7_2:+77082559 | None:intergenic |
| TGGATTGATCTTGCCAAGAA+TGG | 0.418939 | 7_2:+77081287 | None:intergenic |
| CACAACCAGTGCTGTTAGCT+TGG | 0.421611 | 7_2:+77082704 | None:intergenic |
| AAAATTCATGGAAGCTGGAT+TGG | 0.421768 | 7_2:-77081352 | Msa1078220:CDS |
| TGGTGTGTCATCACGCTCTA+TGG | 0.423024 | 7_2:-77081388 | Msa1078220:CDS |
| AGATGAAATACTAAAATTCA+TGG | 0.428022 | 7_2:-77081364 | Msa1078220:CDS |
| ACTAAGTATTGCATTGTTCA+AGG | 0.440010 | 7_2:+77081311 | None:intergenic |
| AAGAAGCAGTGGACATTCAT+TGG | 0.445266 | 7_2:-77082599 | Msa1078220:CDS |
| ATACTAAAATTCATGGAAGC+TGG | 0.448559 | 7_2:-77081357 | Msa1078220:CDS |
| GGTATTTGTAGCACAATTGT+TGG | 0.475026 | 7_2:-77081408 | Msa1078220:CDS |
| AAAATTTGACCTAATTCTCA+TGG | 0.477878 | 7_2:-77082568 | Msa1078220:CDS |
| AAAAGTCAAGGTGTGGAGAA+TGG | 0.478580 | 7_2:-77082624 | Msa1078220:CDS |
| ACAAAGGAACTTCGTGCAAT+GGG | 0.482431 | 7_2:-77081429 | Msa1078220:CDS |
| CAAGCTAACAGCACTGGTTG+TGG | 0.482562 | 7_2:-77082703 | Msa1078220:CDS |
| ACCTCAATGCCATTCATGAT+AGG | 0.492567 | 7_2:+77082534 | None:intergenic |
| CCTTGCATCCATCACACAGT+TGG | 0.511788 | 7_2:+77081267 | None:intergenic |
| AACAAAGGAACTTCGTGCAA+TGG | 0.518430 | 7_2:-77081430 | Msa1078220:CDS |
| ATGGATATGCCTATCATGAA+TGG | 0.542735 | 7_2:-77082543 | Msa1078220:CDS |
| CTAAGTATTGCATTGTTCAA+GGG | 0.546876 | 7_2:+77081312 | None:intergenic |
| CAGTGGACATTCATTGGCGT+GGG | 0.559565 | 7_2:-77082593 | Msa1078220:CDS |
| GCCTATCATGAATGGCATTG+AGG | 0.559799 | 7_2:-77082535 | Msa1078220:intron |
| TGTATCCAAGCTAACAGCAC+TGG | 0.575373 | 7_2:-77082709 | Msa1078220:CDS |
| TGTGTTTATATAGGCAACAA+AGG | 0.581181 | 7_2:-77081445 | Msa1078220:intron |
| AGATCAATCCAACTGTGTGA+TGG | 0.583988 | 7_2:-77081275 | None:intergenic |
| TGACCTAATTCTCATGGACA+TGG | 0.592027 | 7_2:-77082562 | Msa1078220:CDS |
| GCAGTGGACATTCATTGGCG+TGG | 0.597898 | 7_2:-77082594 | Msa1078220:CDS |
| AAATTTGGAGTCAAAAGTCA+AGG | 0.637368 | 7_2:-77082636 | Msa1078220:CDS |
| TGGAGTCAAAAGTCAAGGTG+TGG | 0.637883 | 7_2:-77082631 | Msa1078220:CDS |
| GGAGAATGGAAAAGAAGCAG+TGG | 0.653869 | 7_2:-77082610 | Msa1078220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATAAATAAAAA+AGG | + | chr7_2:77082530-77082549 | None:intergenic | 0.0% |
| !! | AATATAAATATAAATAAAAA+AGG | + | chr7_2:77082530-77082549 | None:intergenic | 0.0% |
| !! | TATAAAAATATATAAACTTG+GGG | + | chr7_2:77081718-77081737 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | + | chr7_2:77081720-77081739 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | + | chr7_2:77082084-77082103 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | + | chr7_2:77082254-77082273 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | - | chr7_2:77082253-77082272 | Msa1078220:intron | 10.0% |
| !! | TATAAAAATATATAAACTTG+GGG | + | chr7_2:77081718-77081737 | None:intergenic | 10.0% |
| !! | CATATAAAAATATATAAACT+TGG | + | chr7_2:77081720-77081739 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTTTACTTTTG+AGG | + | chr7_2:77082084-77082103 | None:intergenic | 10.0% |
| !! | ACTAAAATTAACTATAAAAT+TGG | + | chr7_2:77082254-77082273 | None:intergenic | 10.0% |
| !!! | AATTTTATAGTTAATTTTAG+TGG | - | chr7_2:77082253-77082272 | Msa1078220:intron | 10.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | - | chr7_2:77081935-77081954 | Msa1078220:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | + | chr7_2:77082250-77082269 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | + | chr7_2:77082251-77082270 | None:intergenic | 15.0% |
| !!! | ATATTTATATAGTTTGTTAG+AGG | - | chr7_2:77081935-77081954 | Msa1078220:intron | 15.0% |
| !! | AAATTAACTATAAAATTGGA+GGG | + | chr7_2:77082250-77082269 | None:intergenic | 15.0% |
| !! | AAAATTAACTATAAAATTGG+AGG | + | chr7_2:77082251-77082270 | None:intergenic | 15.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | - | chr7_2:77081356-77081375 | Msa1078220:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | + | chr7_2:77081502-77081521 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | - | chr7_2:77081738-77081757 | Msa1078220:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | - | chr7_2:77081813-77081832 | Msa1078220:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | - | chr7_2:77082643-77082662 | Msa1078220:CDS | 20.0% |
| !! | CAAAAGATGTTGAATAAATT+TGG | - | chr7_2:77081356-77081375 | Msa1078220:CDS | 20.0% |
| !! | CTCTATAATTAATTAAGTAC+AGG | + | chr7_2:77081502-77081521 | None:intergenic | 20.0% |
| !! | TGATTATGGTCTATATAATT+TGG | - | chr7_2:77081738-77081757 | Msa1078220:intron | 20.0% |
| !! | GAAGAAAATGAAAATACTTA+TGG | - | chr7_2:77081813-77081832 | Msa1078220:intron | 20.0% |
| !! | AGATGAAATACTAAAATTCA+TGG | - | chr7_2:77082643-77082662 | Msa1078220:CDS | 20.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | + | chr7_2:77081346-77081365 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | - | chr7_2:77081439-77081458 | Msa1078220:intron | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | - | chr7_2:77081525-77081544 | Msa1078220:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | - | chr7_2:77081565-77081584 | Msa1078220:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | - | chr7_2:77081658-77081677 | Msa1078220:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | - | chr7_2:77081791-77081810 | Msa1078220:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | - | chr7_2:77081939-77081958 | Msa1078220:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | + | chr7_2:77081998-77082017 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | - | chr7_2:77082003-77082022 | Msa1078220:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | - | chr7_2:77082142-77082161 | Msa1078220:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | + | chr7_2:77082419-77082438 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | - | chr7_2:77082553-77082572 | Msa1078220:CDS | 25.0% |
| !! | ACATCTTTTGATGAATCTTT+CGG | + | chr7_2:77081346-77081365 | None:intergenic | 25.0% |
| ! | AAAATTTGACCTAATTCTCA+TGG | - | chr7_2:77081439-77081458 | Msa1078220:intron | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | - | chr7_2:77081525-77081544 | Msa1078220:intron | 25.0% |
| !! | TTCATTTTCTCTCTTTTCAT+TGG | - | chr7_2:77081565-77081584 | Msa1078220:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | - | chr7_2:77081658-77081677 | Msa1078220:intron | 25.0% |
| ! | TAGTGTACTATTATTGTTCA+TGG | - | chr7_2:77081791-77081810 | Msa1078220:intron | 25.0% |
| !!! | TTATATAGTTTGTTAGAGGA+AGG | - | chr7_2:77081939-77081958 | Msa1078220:intron | 25.0% |
| ! | ACTAAAGGAATTTAAGAATG+AGG | + | chr7_2:77081998-77082017 | None:intergenic | 25.0% |
| ! | TTAAATTCCTTTAGTGTTCA+GGG | - | chr7_2:77082003-77082022 | Msa1078220:intron | 25.0% |
| !!! | CTCATTTGATTTTGTTACTA+TGG | - | chr7_2:77082142-77082161 | Msa1078220:intron | 25.0% |
| !!! | GATAGTTTTATTGAGAAAGA+AGG | + | chr7_2:77082419-77082438 | None:intergenic | 25.0% |
| ! | TGTGTGTTATGTGTTTATAT+AGG | - | chr7_2:77082553-77082572 | Msa1078220:CDS | 25.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | - | chr7_2:77081371-77081390 | Msa1078220:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | - | chr7_2:77081524-77081543 | Msa1078220:intron | 30.0% | |
| AAATACTTATGGCCCAATAT+TGG | - | chr7_2:77081824-77081843 | Msa1078220:intron | 30.0% | |
| ! | AAAGTACCTTCACCAATATT+GGG | + | chr7_2:77081839-77081858 | None:intergenic | 30.0% |
| !! | AAAAGTACCTTCACCAATAT+TGG | + | chr7_2:77081840-77081859 | None:intergenic | 30.0% |
| TTAGAGGAAGGAGAAATTAT+TGG | - | chr7_2:77081951-77081970 | Msa1078220:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | - | chr7_2:77081971-77081990 | Msa1078220:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | - | chr7_2:77082002-77082021 | Msa1078220:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | + | chr7_2:77082126-77082145 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | - | chr7_2:77082296-77082315 | Msa1078220:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | - | chr7_2:77082364-77082383 | Msa1078220:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | + | chr7_2:77082404-77082423 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | - | chr7_2:77082562-77082581 | Msa1078220:CDS | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | - | chr7_2:77082650-77082669 | Msa1078220:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | + | chr7_2:77082698-77082717 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | + | chr7_2:77082699-77082718 | None:intergenic | 30.0% |
| ! | AAATTTGGAGTCAAAAGTCA+AGG | - | chr7_2:77081371-77081390 | Msa1078220:CDS | 30.0% |
| GTGATATATGTACAACCATT+TGG | - | chr7_2:77081524-77081543 | Msa1078220:intron | 30.0% | |
| AAATACTTATGGCCCAATAT+TGG | - | chr7_2:77081824-77081843 | Msa1078220:intron | 30.0% | |
| ! | AAAGTACCTTCACCAATATT+GGG | + | chr7_2:77081839-77081858 | None:intergenic | 30.0% |
| !! | AAAAGTACCTTCACCAATAT+TGG | + | chr7_2:77081840-77081859 | None:intergenic | 30.0% |
| TTAGAGGAAGGAGAAATTAT+TGG | - | chr7_2:77081951-77081970 | Msa1078220:intron | 30.0% | |
| TGGTAACAAATATCGAATGT+TGG | - | chr7_2:77081971-77081990 | Msa1078220:intron | 30.0% | |
| CTTAAATTCCTTTAGTGTTC+AGG | - | chr7_2:77082002-77082021 | Msa1078220:intron | 30.0% | |
| TGAGTGAACTTTATAATACG+AGG | + | chr7_2:77082126-77082145 | None:intergenic | 30.0% | |
| TTAAGTCTCTCTAGATGTTT+AGG | - | chr7_2:77082296-77082315 | Msa1078220:intron | 30.0% | |
| AGGAAAATATGTTCACTCAT+TGG | - | chr7_2:77082364-77082383 | Msa1078220:intron | 30.0% | |
| AAAGAAGGAATTAGTACAAG+TGG | + | chr7_2:77082404-77082423 | None:intergenic | 30.0% | |
| TGTGTTTATATAGGCAACAA+AGG | - | chr7_2:77082562-77082581 | Msa1078220:CDS | 30.0% | |
| ATACTAAAATTCATGGAAGC+TGG | - | chr7_2:77082650-77082669 | Msa1078220:CDS | 30.0% | |
| ! | CTAAGTATTGCATTGTTCAA+GGG | + | chr7_2:77082698-77082717 | None:intergenic | 30.0% |
| ! | ACTAAGTATTGCATTGTTCA+AGG | + | chr7_2:77082699-77082718 | None:intergenic | 30.0% |
| ! | AGCTTGGATACAAAGTTTTG+AGG | + | chr7_2:77081290-77081309 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | + | chr7_2:77081451-77081470 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | - | chr7_2:77081464-77081483 | Msa1078220:intron | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | + | chr7_2:77081542-77081561 | None:intergenic | 35.0% | |
| AAGTTGTGTCTTTACTTGCA+GGG | + | chr7_2:77082041-77082060 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | + | chr7_2:77082042-77082061 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | - | chr7_2:77082041-77082060 | Msa1078220:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | + | chr7_2:77082336-77082355 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+TGG | - | chr7_2:77082337-77082356 | Msa1078220:intron | 35.0% | |
| CAACTAAGCTACATCTTCAT+GGG | - | chr7_2:77082338-77082357 | Msa1078220:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | - | chr7_2:77082599-77082618 | Msa1078220:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | - | chr7_2:77082655-77082674 | Msa1078220:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | - | chr7_2:77082707-77082726 | Msa1078220:CDS | 35.0% | |
| ! | AGCTTGGATACAAAGTTTTG+AGG | + | chr7_2:77081290-77081309 | None:intergenic | 35.0% |
| TATCCATGTCCATGAGAATT+AGG | + | chr7_2:77081451-77081470 | None:intergenic | 35.0% | |
| ATGGATATGCCTATCATGAA+TGG | - | chr7_2:77081464-77081483 | Msa1078220:intron | 35.0% | |
| TGTCATCAAATTGTCCCAAA+TGG | + | chr7_2:77081542-77081561 | None:intergenic | 35.0% | |
| AAGTTGTGTCTTTACTTGCA+GGG | + | chr7_2:77082041-77082060 | None:intergenic | 35.0% | |
| AAAGTTGTGTCTTTACTTGC+AGG | + | chr7_2:77082042-77082061 | None:intergenic | 35.0% | |
| TGCAAGTAAAGACACAACTT+TGG | - | chr7_2:77082041-77082060 | Msa1078220:intron | 35.0% | |
| GAAGATGTAGCTTAGTTGTA+TGG | + | chr7_2:77082336-77082355 | None:intergenic | 35.0% | |
| ACAACTAAGCTACATCTTCA+TGG | - | chr7_2:77082337-77082356 | Msa1078220:intron | 35.0% | |
| CAACTAAGCTACATCTTCAT+GGG | - | chr7_2:77082338-77082357 | Msa1078220:intron | 35.0% | |
| GGTATTTGTAGCACAATTGT+TGG | - | chr7_2:77082599-77082618 | Msa1078220:CDS | 35.0% | |
| AAAATTCATGGAAGCTGGAT+TGG | - | chr7_2:77082655-77082674 | Msa1078220:CDS | 35.0% | |
| GCAATACTTAGTTCCATTCT+TGG | - | chr7_2:77082707-77082726 | Msa1078220:CDS | 35.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | - | chr7_2:77081383-77081402 | Msa1078220:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | - | chr7_2:77081408-77081427 | Msa1078220:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | - | chr7_2:77081445-77081464 | Msa1078220:intron | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | + | chr7_2:77081476-77081495 | None:intergenic | 40.0% | |
| TTATGGCCCAATATTGGTGA+AGG | - | chr7_2:77081830-77081849 | Msa1078220:intron | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | - | chr7_2:77082577-77082596 | Msa1078220:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | - | chr7_2:77082578-77082597 | Msa1078220:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | + | chr7_2:77082723-77082742 | None:intergenic | 40.0% | |
| AAAAGTCAAGGTGTGGAGAA+TGG | - | chr7_2:77081383-77081402 | Msa1078220:CDS | 40.0% | |
| AAGAAGCAGTGGACATTCAT+TGG | - | chr7_2:77081408-77081427 | Msa1078220:CDS | 40.0% | |
| TGACCTAATTCTCATGGACA+TGG | - | chr7_2:77081445-77081464 | Msa1078220:intron | 40.0% | |
| ACCTCAATGCCATTCATGAT+AGG | + | chr7_2:77081476-77081495 | None:intergenic | 40.0% | |
| TTATGGCCCAATATTGGTGA+AGG | - | chr7_2:77081830-77081849 | Msa1078220:intron | 40.0% | |
| AACAAAGGAACTTCGTGCAA+TGG | - | chr7_2:77082577-77082596 | Msa1078220:CDS | 40.0% | |
| ACAAAGGAACTTCGTGCAAT+GGG | - | chr7_2:77082578-77082597 | Msa1078220:CDS | 40.0% | |
| TGGATTGATCTTGCCAAGAA+TGG | + | chr7_2:77082723-77082742 | None:intergenic | 40.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | - | chr7_2:77081298-77081317 | Msa1078220:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | - | chr7_2:77081376-77081395 | Msa1078220:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | - | chr7_2:77081397-77081416 | Msa1078220:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | - | chr7_2:77081472-77081491 | Msa1078220:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | + | chr7_2:77082013-77082032 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCATGGG+AGG | - | chr7_2:77082341-77082360 | Msa1078220:intron | 45.0% | |
| TGTATCCAAGCTAACAGCAC+TGG | - | chr7_2:77081298-77081317 | Msa1078220:CDS | 45.0% | |
| TGGAGTCAAAAGTCAAGGTG+TGG | - | chr7_2:77081376-77081395 | Msa1078220:CDS | 45.0% | |
| GGAGAATGGAAAAGAAGCAG+TGG | - | chr7_2:77081397-77081416 | Msa1078220:CDS | 45.0% | |
| GCCTATCATGAATGGCATTG+AGG | - | chr7_2:77081472-77081491 | Msa1078220:intron | 45.0% | |
| GGATCAACCCTGAACACTAA+AGG | + | chr7_2:77082013-77082032 | None:intergenic | 45.0% | |
| CTAAGCTACATCTTCATGGG+AGG | - | chr7_2:77082341-77082360 | Msa1078220:intron | 45.0% | |
| !! | ATATAAAAATATATAAACTT+GGG | + | chr7_2:77081719-77081738 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | - | chr7_2:77081724-77081743 | Msa1078220:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | - | chr7_2:77081876-77081895 | Msa1078220:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | - | chr7_2:77081903-77081922 | Msa1078220:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | - | chr7_2:77082100-77082119 | Msa1078220:intron | 5.0% |
| !! | ATATAAAAATATATAAACTT+GGG | + | chr7_2:77081719-77081738 | None:intergenic | 5.0% |
| !!! | TATATATTTTTATATGATTA+TGG | - | chr7_2:77081724-77081743 | Msa1078220:intron | 5.0% |
| !!! | AATAAATATTTATTTTTTGA+AGG | - | chr7_2:77081876-77081895 | Msa1078220:intron | 5.0% |
| !! | AGAAATAAATATTTATTTAT+AGG | - | chr7_2:77081903-77081922 | Msa1078220:intron | 5.0% |
| !!! | TTTTTAATAGTATTAATTTT+AGG | - | chr7_2:77082100-77082119 | Msa1078220:intron | 5.0% |
| ! | CACAACCAGTGCTGTTAGCT+TGG | + | chr7_2:77081306-77081325 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | - | chr7_2:77081304-77081323 | Msa1078220:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | - | chr7_2:77081414-77081433 | Msa1078220:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | + | chr7_2:77082034-77082053 | None:intergenic | 50.0% | |
| AGCTACATCTTCATGGGAGG+AGG | - | chr7_2:77082344-77082363 | Msa1078220:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | - | chr7_2:77082619-77082638 | Msa1078220:CDS | 50.0% | |
| ! | CACAACCAGTGCTGTTAGCT+TGG | + | chr7_2:77081306-77081325 | None:intergenic | 50.0% |
| !! | CAAGCTAACAGCACTGGTTG+TGG | - | chr7_2:77081304-77081323 | Msa1078220:CDS | 50.0% |
| CAGTGGACATTCATTGGCGT+GGG | - | chr7_2:77081414-77081433 | Msa1078220:CDS | 50.0% | |
| GTCTTTACTTGCAGGGTCGT+TGG | + | chr7_2:77082034-77082053 | None:intergenic | 50.0% | |
| AGCTACATCTTCATGGGAGG+AGG | - | chr7_2:77082344-77082363 | Msa1078220:intron | 50.0% | |
| TGGTGTGTCATCACGCTCTA+TGG | - | chr7_2:77082619-77082638 | Msa1078220:CDS | 50.0% | |
| GCAGTGGACATTCATTGGCG+TGG | - | chr7_2:77081413-77081432 | Msa1078220:CDS | 55.0% | |
| GCAGTGGACATTCATTGGCG+TGG | - | chr7_2:77081413-77081432 | Msa1078220:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 77081278 | 77082751 | 77081278 | ID=Msa1078220;Name=Msa1078220 |
| chr7_2 | mRNA | 77081278 | 77082751 | 77081278 | ID=Msa1078220-mRNA-1;Parent=Msa1078220;Name=Msa1078220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|130 |
| chr7_2 | exon | 77082536 | 77082751 | 77082536 | ID=Msa1078220-mRNA-1:exon:18828;Parent=Msa1078220-mRNA-1 |
| chr7_2 | exon | 77081278 | 77081454 | 77081278 | ID=Msa1078220-mRNA-1:exon:18827;Parent=Msa1078220-mRNA-1 |
| chr7_2 | CDS | 77082536 | 77082751 | 77082536 | ID=Msa1078220-mRNA-1:cds;Parent=Msa1078220-mRNA-1 |
| chr7_2 | CDS | 77081278 | 77081454 | 77081278 | ID=Msa1078220-mRNA-1:cds;Parent=Msa1078220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
