Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078650 | XP_024641248.2 | 95.181 | 166 | 8 | 0 | 498 | 663 | 584 | 749 | 9.88e-99 | 330 |
| Msa1078650 | XP_024641248.2 | 96.192 | 499 | 19 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078650 | sp|Q9SY66|FRS11_ARATH | 48.140 | 457 | 230 | 2 | 42 | 497 | 43 | 493 | 3.41e-157 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078650 | A0A396JX52 | 95.181 | 166 | 8 | 0 | 498 | 663 | 584 | 749 | 4.72e-99 | 330 |
| Msa1078650 | A0A396JX52 | 96.192 | 499 | 19 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1078650 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078650 | MtrunA17_Chr1g0198761 | 96.192 | 499 | 19 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1004 |
| Msa1078650 | MtrunA17_Chr1g0198761 | 95.181 | 166 | 8 | 0 | 498 | 663 | 584 | 749 | 9.09e-103 | 330 |
| Msa1078650 | MtrunA17_Chr5g0431001 | 72.464 | 483 | 117 | 2 | 1 | 468 | 1 | 482 | 0.0 | 724 |
| Msa1078650 | MtrunA17_Chr2g0276841 | 50.331 | 453 | 218 | 2 | 46 | 497 | 69 | 515 | 1.11e-167 | 496 |
| Msa1078650 | MtrunA17_Chr2g0294841 | 45.618 | 502 | 258 | 7 | 3 | 498 | 2 | 494 | 3.05e-150 | 453 |
| Msa1078650 | MtrunA17_Chr2g0294841 | 29.070 | 172 | 94 | 6 | 498 | 647 | 580 | 745 | 2.44e-12 | 70.5 |
| Msa1078650 | MtrunA17_Chr2g0290391 | 44.008 | 509 | 257 | 5 | 48 | 537 | 52 | 551 | 2.84e-144 | 436 |
| Msa1078650 | MtrunA17_Chr8g0363841 | 31.724 | 435 | 276 | 10 | 47 | 476 | 17 | 435 | 2.35e-62 | 219 |
| Msa1078650 | MtrunA17_Chr1g0202341 | 31.910 | 445 | 278 | 11 | 49 | 486 | 53 | 479 | 2.37e-62 | 219 |
| Msa1078650 | MtrunA17_Chr5g0448761 | 30.719 | 459 | 299 | 9 | 36 | 488 | 52 | 497 | 3.24e-62 | 221 |
| Msa1078650 | MtrunA17_Chr2g0296781 | 32.798 | 436 | 267 | 9 | 53 | 483 | 3 | 417 | 3.27e-62 | 220 |
| Msa1078650 | MtrunA17_Chr5g0441581 | 30.649 | 447 | 281 | 12 | 50 | 493 | 35 | 455 | 1.99e-60 | 214 |
| Msa1078650 | MtrunA17_Chr2g0287651 | 30.140 | 428 | 280 | 8 | 53 | 477 | 81 | 492 | 4.50e-60 | 216 |
| Msa1078650 | MtrunA17_Chr1g0203051 | 28.829 | 444 | 297 | 7 | 59 | 500 | 91 | 517 | 5.81e-59 | 209 |
| Msa1078650 | MtrunA17_Chr6g0477261 | 37.217 | 309 | 183 | 5 | 180 | 483 | 4 | 306 | 5.55e-57 | 204 |
| Msa1078650 | MtrunA17_Chr3g0080351 | 27.887 | 459 | 280 | 10 | 50 | 494 | 79 | 500 | 1.50e-55 | 203 |
| Msa1078650 | MtrunA17_Chr3g0082121 | 31.510 | 457 | 291 | 10 | 53 | 507 | 49 | 485 | 8.70e-55 | 199 |
| Msa1078650 | MtrunA17_Chr2g0329031 | 27.679 | 448 | 290 | 10 | 53 | 494 | 20 | 439 | 1.04e-53 | 196 |
| Msa1078650 | MtrunA17_Chr2g0324011 | 28.276 | 435 | 299 | 5 | 50 | 483 | 13 | 435 | 4.98e-51 | 186 |
| Msa1078650 | MtrunA17_Chr1g0196541 | 28.670 | 436 | 289 | 10 | 52 | 484 | 2 | 418 | 1.97e-50 | 187 |
| Msa1078650 | MtrunA17_Chr6g0458391 | 28.315 | 445 | 281 | 8 | 44 | 483 | 222 | 633 | 3.29e-47 | 178 |
| Msa1078650 | MtrunA17_Chr1g0207551 | 27.812 | 489 | 317 | 12 | 50 | 532 | 37 | 495 | 5.81e-47 | 177 |
| Msa1078650 | MtrunA17_Chr3g0081281 | 80.645 | 93 | 18 | 0 | 195 | 287 | 1 | 93 | 9.10e-46 | 157 |
| Msa1078650 | MtrunA17_Chr2g0287061 | 29.861 | 432 | 245 | 13 | 48 | 476 | 184 | 560 | 4.45e-43 | 166 |
| Msa1078650 | MtrunA17_Chr1g0203721 | 26.724 | 464 | 302 | 12 | 30 | 478 | 46 | 486 | 5.72e-42 | 163 |
| Msa1078650 | MtrunA17_Chr5g0440451 | 25.821 | 457 | 289 | 12 | 48 | 483 | 44 | 471 | 3.24e-41 | 161 |
| Msa1078650 | MtrunA17_Chr2g0291581 | 26.724 | 464 | 306 | 14 | 53 | 512 | 77 | 510 | 1.21e-40 | 158 |
| Msa1078650 | MtrunA17_Chr5g0448511 | 32.271 | 251 | 168 | 2 | 235 | 484 | 16 | 265 | 1.38e-38 | 150 |
| Msa1078650 | MtrunA17_Chr1g0164591 | 36.275 | 204 | 128 | 2 | 248 | 450 | 106 | 308 | 1.68e-38 | 145 |
| Msa1078650 | MtrunA17_Chr3g0118611 | 31.179 | 263 | 176 | 4 | 189 | 450 | 79 | 337 | 3.63e-38 | 151 |
| Msa1078650 | MtrunA17_Chr2g0291591 | 26.906 | 446 | 274 | 14 | 49 | 476 | 66 | 477 | 5.31e-38 | 149 |
| Msa1078650 | MtrunA17_Chr5g0430921 | 69.048 | 84 | 26 | 0 | 580 | 663 | 1 | 84 | 1.99e-35 | 128 |
| Msa1078650 | MtrunA17_Chr7g0258861 | 27.178 | 287 | 195 | 6 | 50 | 333 | 13 | 288 | 1.28e-25 | 107 |
| Msa1078650 | MtrunA17_Chr7g0233911 | 34.328 | 134 | 73 | 4 | 30 | 158 | 13 | 136 | 2.14e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1078650 | AT1G10240.2 | 48.140 | 457 | 230 | 2 | 42 | 497 | 43 | 493 | 3.47e-158 | 471 |
| Msa1078650 | AT1G10240.1 | 48.140 | 457 | 230 | 2 | 42 | 497 | 43 | 493 | 3.47e-158 | 471 |
| Msa1078650 | AT5G28530.3 | 43.154 | 482 | 254 | 4 | 17 | 488 | 28 | 499 | 6.36e-134 | 409 |
| Msa1078650 | AT5G28530.2 | 43.154 | 482 | 254 | 4 | 17 | 488 | 28 | 499 | 6.36e-134 | 409 |
| Msa1078650 | AT5G28530.1 | 43.096 | 478 | 252 | 4 | 17 | 484 | 28 | 495 | 2.70e-132 | 405 |
| Msa1078650 | AT5G28530.5 | 37.288 | 472 | 233 | 4 | 17 | 488 | 28 | 436 | 1.90e-98 | 315 |
| Msa1078650 | AT5G28530.4 | 37.179 | 468 | 231 | 4 | 17 | 484 | 28 | 432 | 6.96e-97 | 311 |
| Msa1078650 | AT4G38180.1 | 30.059 | 509 | 333 | 9 | 48 | 546 | 74 | 569 | 6.30e-63 | 223 |
| Msa1078650 | AT4G15090.1 | 29.730 | 444 | 288 | 9 | 50 | 486 | 54 | 480 | 1.52e-59 | 214 |
| Msa1078650 | AT4G15090.5 | 29.730 | 444 | 288 | 9 | 50 | 486 | 54 | 480 | 1.52e-59 | 214 |
| Msa1078650 | AT4G15090.3 | 29.730 | 444 | 288 | 9 | 50 | 486 | 54 | 480 | 1.52e-59 | 214 |
| Msa1078650 | AT4G15090.2 | 29.730 | 444 | 288 | 9 | 50 | 486 | 54 | 480 | 1.52e-59 | 214 |
| Msa1078650 | AT4G15090.4 | 29.730 | 444 | 288 | 9 | 50 | 486 | 54 | 480 | 1.52e-59 | 214 |
| Msa1078650 | AT1G76320.2 | 27.778 | 450 | 288 | 11 | 53 | 494 | 3 | 423 | 4.09e-48 | 181 |
| Msa1078650 | AT1G76320.1 | 27.778 | 450 | 288 | 11 | 53 | 494 | 3 | 423 | 4.95e-48 | 181 |
| Msa1078650 | AT1G76320.4 | 27.778 | 450 | 288 | 11 | 53 | 494 | 3 | 423 | 4.95e-48 | 181 |
| Msa1078650 | AT1G76320.3 | 27.778 | 450 | 288 | 11 | 53 | 494 | 3 | 423 | 6.60e-48 | 179 |
| Msa1078650 | AT3G22170.2 | 26.940 | 464 | 279 | 13 | 50 | 494 | 73 | 495 | 7.75e-48 | 181 |
| Msa1078650 | AT3G22170.1 | 26.940 | 464 | 279 | 13 | 50 | 494 | 73 | 495 | 7.75e-48 | 181 |
| Msa1078650 | AT1G52520.1 | 26.834 | 477 | 301 | 14 | 50 | 509 | 88 | 533 | 1.26e-39 | 155 |
| Msa1078650 | AT3G06250.2 | 28.046 | 435 | 250 | 13 | 48 | 478 | 191 | 566 | 2.83e-39 | 155 |
| Msa1078650 | AT3G06250.1 | 28.046 | 435 | 250 | 13 | 48 | 478 | 191 | 566 | 2.83e-39 | 155 |
| Msa1078650 | AT3G06250.3 | 28.046 | 435 | 250 | 13 | 48 | 478 | 191 | 566 | 2.83e-39 | 155 |
| Msa1078650 | AT2G27110.2 | 25.874 | 429 | 275 | 11 | 50 | 476 | 52 | 439 | 1.25e-38 | 153 |
| Msa1078650 | AT2G27110.1 | 25.874 | 429 | 275 | 11 | 50 | 476 | 52 | 439 | 1.25e-38 | 153 |
| Msa1078650 | AT5G18960.2 | 27.033 | 455 | 272 | 14 | 33 | 483 | 197 | 595 | 5.43e-37 | 148 |
| Msa1078650 | AT5G18960.1 | 27.033 | 455 | 272 | 14 | 33 | 483 | 197 | 595 | 5.43e-37 | 148 |
| Msa1078650 | AT2G32250.7 | 24.883 | 426 | 263 | 9 | 53 | 476 | 3 | 373 | 1.45e-36 | 147 |
| Msa1078650 | AT4G19990.6 | 27.009 | 448 | 259 | 13 | 49 | 478 | 23 | 420 | 2.42e-36 | 146 |
| Msa1078650 | AT4G19990.2 | 27.009 | 448 | 259 | 13 | 49 | 478 | 23 | 420 | 2.42e-36 | 146 |
| Msa1078650 | AT4G19990.3 | 27.009 | 448 | 259 | 13 | 49 | 478 | 23 | 420 | 2.51e-36 | 146 |
| Msa1078650 | AT4G19990.4 | 27.009 | 448 | 259 | 13 | 49 | 478 | 23 | 420 | 2.51e-36 | 146 |
| Msa1078650 | AT4G19990.5 | 27.009 | 448 | 259 | 13 | 49 | 478 | 23 | 420 | 3.31e-36 | 145 |
| Msa1078650 | AT4G19990.7 | 27.009 | 448 | 259 | 13 | 49 | 478 | 37 | 434 | 3.45e-36 | 145 |
| Msa1078650 | AT2G27110.3 | 29.961 | 257 | 172 | 5 | 222 | 476 | 44 | 294 | 1.22e-34 | 140 |
| Msa1078650 | AT1G80010.1 | 25.390 | 449 | 283 | 12 | 50 | 476 | 98 | 516 | 3.05e-34 | 139 |
| Msa1078650 | AT2G32250.5 | 28.390 | 236 | 167 | 2 | 242 | 476 | 180 | 414 | 6.32e-34 | 139 |
| Msa1078650 | AT2G32250.2 | 28.390 | 236 | 167 | 2 | 242 | 476 | 180 | 414 | 6.38e-34 | 139 |
| Msa1078650 | AT2G32250.4 | 28.390 | 236 | 167 | 2 | 242 | 476 | 180 | 414 | 6.38e-34 | 139 |
| Msa1078650 | AT2G32250.8 | 28.390 | 236 | 167 | 2 | 242 | 476 | 139 | 373 | 7.21e-34 | 138 |
| Msa1078650 | AT2G32250.6 | 28.390 | 236 | 167 | 2 | 242 | 476 | 180 | 414 | 7.21e-34 | 139 |
| Msa1078650 | AT2G32250.1 | 28.390 | 236 | 167 | 2 | 242 | 476 | 180 | 414 | 7.21e-34 | 139 |
| Msa1078650 | AT2G32250.3 | 28.390 | 236 | 167 | 2 | 242 | 476 | 180 | 414 | 7.21e-34 | 139 |
| Msa1078650 | AT4G19990.1 | 26.884 | 398 | 231 | 11 | 98 | 478 | 9 | 363 | 1.80e-32 | 134 |
| Msa1078650 | AT4G38170.1 | 26.894 | 264 | 164 | 5 | 234 | 484 | 20 | 267 | 9.09e-26 | 112 |
Find 100 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTCGCTTCGTCAATTT+TGG | 0.097332 | 7_2:-77637639 | Msa1078650:CDS |
| ACAAATTGGAGCATATTATT+TGG | 0.124855 | 7_2:-77638232 | Msa1078650:CDS |
| ACGACATGCCACTTGGAATA+TGG | 0.171984 | 7_2:-77638130 | Msa1078650:CDS |
| GCCTGAAATCCAAGAAAATT+TGG | 0.233903 | 7_2:-77636854 | Msa1078650:CDS |
| GAAATCAGTCAGACTTGTTT+TGG | 0.264083 | 7_2:+77637522 | None:intergenic |
| TTCCTTTACATGGGCTATAA+AGG | 0.281917 | 7_2:-77638039 | Msa1078650:intron |
| AATCGATGACAATAACAAAT+TGG | 0.284735 | 7_2:-77638246 | Msa1078650:CDS |
| TAGAACACAACCAAAGAAAA+TGG | 0.288289 | 7_2:+77638082 | None:intergenic |
| ACATTCAACTCATCATTATC+TGG | 0.288967 | 7_2:+77636811 | None:intergenic |
| AATCATCTTCACATTCTAAA+TGG | 0.310029 | 7_2:+77637728 | None:intergenic |
| AATTTCTAGACATTGAATTA+AGG | 0.310730 | 7_2:+77636954 | None:intergenic |
| TGATCAATTCCACCGCAATT+TGG | 0.312242 | 7_2:+77636691 | None:intergenic |
| CCAAAAGGATCAAGGCTAAA+AGG | 0.316490 | 7_2:-77636754 | Msa1078650:CDS |
| GCAATAGCTTCTTTCATTGC+AGG | 0.316817 | 7_2:+77637877 | None:intergenic |
| CAAATTGGAGCATATTATTT+GGG | 0.322554 | 7_2:-77638231 | Msa1078650:CDS |
| GAGCATATTATTTGGGCATT+TGG | 0.323044 | 7_2:-77638224 | Msa1078650:CDS |
| ATAATGAAGTGGAAGGTAAA+AGG | 0.341694 | 7_2:-77638673 | Msa1078650:CDS |
| ATTCAATCTCAAAGTGGTAT+TGG | 0.353310 | 7_2:-77638350 | Msa1078650:CDS |
| CGACATGCCACTTGGAATAT+GGG | 0.356248 | 7_2:-77638129 | Msa1078650:CDS |
| CATGGCTTTAATCACTTGAA+TGG | 0.360613 | 7_2:+77636876 | None:intergenic |
| GTGGCTCCCTTGTTAAGTTT+AGG | 0.365380 | 7_2:-77636978 | Msa1078650:CDS |
| TCATCATATCTCGACCCTAA+TGG | 0.370604 | 7_2:+77637778 | None:intergenic |
| ATTCGAGCATATGATGCTTT+CGG | 0.374991 | 7_2:-77638194 | Msa1078650:CDS |
| GCGAATAGAGCAAGACAATA+TGG | 0.379711 | 7_2:+77637653 | None:intergenic |
| AATGGCTTTCTCTAACTCTC+TGG | 0.387604 | 7_2:+77636894 | None:intergenic |
| TTTGCTGGAATGACTACAAC+TGG | 0.388310 | 7_2:-77637589 | Msa1078650:CDS |
| ACCAAGTTGGTAACTTTGCC+AGG | 0.432753 | 7_2:+77637809 | None:intergenic |
| TGAGAGGGAATGGAAATTGA+TGG | 0.437961 | 7_2:-77637704 | Msa1078650:CDS |
| TTGGGCACTAGCTTATTTGA+AGG | 0.439783 | 7_2:-77637620 | Msa1078650:CDS |
| AGAAGATTTCTTCCTTTACA+TGG | 0.445605 | 7_2:-77638049 | Msa1078650:CDS |
| CAGTCGGAGGATAATCCATT+AGG | 0.449548 | 7_2:-77638752 | Msa1078650:CDS |
| CCAAGTATCTTCCTCTTCGT+TGG | 0.454342 | 7_2:-77637053 | Msa1078650:CDS |
| GTAACGATTTATTCGATAAG+TGG | 0.456829 | 7_2:+77638151 | None:intergenic |
| TTTGGTGGGTGTTGATTCTA+CGG | 0.458275 | 7_2:-77636836 | Msa1078650:CDS |
| AAAGGTCCATGTTGTGGCTC+TGG | 0.458551 | 7_2:+77638923 | None:intergenic |
| AACACCATCATCAATGTGAT+TGG | 0.459120 | 7_2:+77638892 | None:intergenic |
| GGAAGAAATGAGGCCATTGA+TGG | 0.463463 | 7_2:-77638995 | Msa1078650:CDS |
| TGAGTTATTAGATGATAAAG+AGG | 0.481430 | 7_2:-77638540 | Msa1078650:CDS |
| TGAGGCCATTGATGGGTCCT+TGG | 0.490216 | 7_2:-77638987 | Msa1078650:CDS |
| GAAGACAAAAGAACGAGAAC+AGG | 0.492424 | 7_2:-77636923 | Msa1078650:CDS |
| TCCTGGCAAAGTTACCAACT+TGG | 0.495704 | 7_2:-77637810 | Msa1078650:CDS |
| ATGTGATTGGCTTGAGGCAA+AGG | 0.498857 | 7_2:+77638905 | None:intergenic |
| TGATCTGTAAGAATTGTTTG+TGG | 0.499648 | 7_2:+77637904 | None:intergenic |
| CCAACGAAGAGGAAGATACT+TGG | 0.501458 | 7_2:+77637053 | None:intergenic |
| TTCATCATCTTCATGTTCCA+AGG | 0.504241 | 7_2:+77638970 | None:intergenic |
| GATGATGGTGTTCTTTATGA+AGG | 0.505535 | 7_2:-77638881 | Msa1078650:CDS |
| GAGTTTGTTTGTCATCGTGC+TGG | 0.506578 | 7_2:-77638716 | Msa1078650:CDS |
| AAAACAAAAGGTCGACCAAA+AGG | 0.507451 | 7_2:-77636769 | Msa1078650:CDS |
| GCTGGAATACTTCGATAAGC+AGG | 0.512358 | 7_2:+77638506 | None:intergenic |
| TAATTGTGGTGCAAAATTGT+TGG | 0.514270 | 7_2:-77638630 | Msa1078650:CDS |
| CTTTATCATCTAATAACTCA+TGG | 0.514899 | 7_2:+77638543 | None:intergenic |
| AGGAAGATACTTGGAAGGGA+GGG | 0.517778 | 7_2:+77637062 | None:intergenic |
| ATACGGTCTTGATCAATAGC+TGG | 0.520656 | 7_2:+77638488 | None:intergenic |
| AATCGTTACGACATGCCACT+TGG | 0.530194 | 7_2:-77638137 | Msa1078650:CDS |
| CAAGCCAATCACATTGATGA+TGG | 0.537972 | 7_2:-77638896 | Msa1078650:CDS |
| TACCTTTATAGCCCATGTAA+AGG | 0.539233 | 7_2:+77638037 | None:intergenic |
| ATGTTCCAAGGACCCATCAA+TGG | 0.541178 | 7_2:+77638982 | None:intergenic |
| AAGTGGAAGGTAAAAGGAAA+CGG | 0.542859 | 7_2:-77638667 | Msa1078650:CDS |
| AATTGAGATAGTTATGTCAT+CGG | 0.549431 | 7_2:-77639020 | None:intergenic |
| ATGCCACTTGGAATATGGGT+TGG | 0.553304 | 7_2:-77638125 | Msa1078650:CDS |
| TTAATCATGTGACTAGATGT+TGG | 0.555091 | 7_2:+77637009 | None:intergenic |
| CGAAGAGGAAGATACTTGGA+AGG | 0.558742 | 7_2:+77637057 | None:intergenic |
| GGTATTTAACAGTGATGATG+AGG | 0.560265 | 7_2:-77638855 | Msa1078650:CDS |
| TGAGGCAAAGGTCCATGTTG+TGG | 0.560366 | 7_2:+77638917 | None:intergenic |
| GAAGATTTCTTCCTTTACAT+GGG | 0.562746 | 7_2:-77638048 | Msa1078650:CDS |
| CATTGTCATGTTCCAAATTG+CGG | 0.563875 | 7_2:-77636703 | Msa1078650:CDS |
| TGGGTTGGAGTCGATAATCA+TGG | 0.565405 | 7_2:-77638110 | Msa1078650:CDS |
| TGGTGTTCTTTATGAAGGAA+AGG | 0.567874 | 7_2:-77638876 | Msa1078650:CDS |
| CAAATCTATTAAGAATCAGT+CGG | 0.568228 | 7_2:-77638768 | Msa1078650:CDS |
| AAGGTCGACCAAAAGGATCA+AGG | 0.568587 | 7_2:-77636762 | Msa1078650:CDS |
| CGCAGACAAAGATAATGAAG+TGG | 0.571345 | 7_2:-77638684 | Msa1078650:CDS |
| GTTAACATTAGAAATCAAGC+TGG | 0.579097 | 7_2:-77637385 | Msa1078650:CDS |
| AATGGAAGAGAAAACCAAGT+TGG | 0.583280 | 7_2:+77637796 | None:intergenic |
| ATGTTGTGGCTCTGGTACAG+TGG | 0.591155 | 7_2:+77638931 | None:intergenic |
| TTAAGGACCTAAACTTAACA+AGG | 0.597172 | 7_2:+77636971 | None:intergenic |
| GACAAAGATAATGAAGTGGA+AGG | 0.597807 | 7_2:-77638680 | Msa1078650:CDS |
| GAAGAAATGAGGCCATTGAT+GGG | 0.599272 | 7_2:-77638994 | Msa1078650:CDS |
| GAGGAAGATACTTGGAAGGG+AGG | 0.601334 | 7_2:+77637061 | None:intergenic |
| TGTCATGTTCCAAATTGCGG+TGG | 0.607106 | 7_2:-77636700 | Msa1078650:CDS |
| GTCATCGGAGGGAAGAAATG+AGG | 0.612844 | 7_2:-77639005 | Msa1078650:CDS |
| GAGATAGTTATGTCATCGGA+GGG | 0.617582 | 7_2:-77639016 | None:intergenic |
| GTTTCTTGTCTCCAACGAAG+AGG | 0.619133 | 7_2:+77637042 | None:intergenic |
| GAAATCCAAGAAAATTTGGT+GGG | 0.622463 | 7_2:-77636850 | Msa1078650:CDS |
| TGAGATAGTTATGTCATCGG+AGG | 0.623694 | 7_2:-77639017 | None:intergenic |
| AATGAAAGAAGCTATTGCAA+TGG | 0.630294 | 7_2:-77637872 | Msa1078650:CDS |
| AATTTCATTCAATCTCAAAG+TGG | 0.633071 | 7_2:-77638356 | Msa1078650:CDS |
| CACATGATTAACAACAATGG+TGG | 0.633540 | 7_2:-77636997 | Msa1078650:CDS |
| TCATCAATGTGATTGGCTTG+AGG | 0.636529 | 7_2:+77638899 | None:intergenic |
| ACTGTACCAGAGCCACAACA+TGG | 0.647764 | 7_2:-77638929 | Msa1078650:CDS |
| ATCTATTAAGAATCAGTCGG+AGG | 0.648389 | 7_2:-77638765 | Msa1078650:CDS |
| AAGTCGTCAAGATGTAATTG+TGG | 0.651128 | 7_2:-77638644 | Msa1078650:CDS |
| TGAAATCCAAGAAAATTTGG+TGG | 0.656666 | 7_2:-77636851 | Msa1078650:CDS |
| TACATATTAGGAGATTGAGA+AGG | 0.657359 | 7_2:+77636622 | None:intergenic |
| AGTCACATGATTAACAACAA+TGG | 0.669494 | 7_2:-77637000 | Msa1078650:CDS |
| GTGGAATTGATCATGACTCG+AGG | 0.673869 | 7_2:-77636681 | Msa1078650:CDS |
| GAAGAGGAAGATACTTGGAA+GGG | 0.674893 | 7_2:+77637058 | None:intergenic |
| AAAGGATCAAGGCTAAAAGG+AGG | 0.688106 | 7_2:-77636751 | Msa1078650:CDS |
| ACTCCAACCCATATTCCAAG+TGG | 0.689531 | 7_2:+77638122 | None:intergenic |
| TAAGGACCTAAACTTAACAA+GGG | 0.703331 | 7_2:+77636972 | None:intergenic |
| TTTGGAACATGACAATGACG+AGG | 0.714978 | 7_2:+77636709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATATTTTTCTTTTTATT+TGG | + | chr7_2:77638979-77638998 | None:intergenic | 10.0% |
| !!! | TCAATATTTTTCTTTTTATT+TGG | + | chr7_2:77638979-77638998 | None:intergenic | 10.0% |
| !! | TTCATATATAAAAAGATTCT+TGG | - | chr7_2:77638080-77638099 | Msa1078650:CDS | 15.0% |
| !! | TCATATATAAAAAGATTCTT+GGG | - | chr7_2:77638081-77638100 | Msa1078650:CDS | 15.0% |
| !! | TTCATATATAAAAAGATTCT+TGG | - | chr7_2:77638080-77638099 | Msa1078650:CDS | 15.0% |
| !! | TCATATATAAAAAGATTCTT+GGG | - | chr7_2:77638081-77638100 | Msa1078650:CDS | 15.0% |
| !! | GGTACATTTATATTTATTTG+AGG | - | chr7_2:77637610-77637629 | Msa1078650:CDS | 20.0% |
| !! | TAATTAATATATTGTTGTGC+AGG | - | chr7_2:77638209-77638228 | Msa1078650:CDS | 20.0% |
| !!! | AATTTCTAGACATTGAATTA+AGG | + | chr7_2:77638677-77638696 | None:intergenic | 20.0% |
| !! | GGTACATTTATATTTATTTG+AGG | - | chr7_2:77637610-77637629 | Msa1078650:CDS | 20.0% |
| !! | TAATTAATATATTGTTGTGC+AGG | - | chr7_2:77638209-77638228 | Msa1078650:CDS | 20.0% |
| !!! | AATTTCTAGACATTGAATTA+AGG | + | chr7_2:77638677-77638696 | None:intergenic | 20.0% |
| ! | CAAATCTATTAAGAATCAGT+CGG | - | chr7_2:77636860-77636879 | Msa1078650:CDS | 25.0% |
| !! | TCTCTTTTATAAACACCTAA+TGG | + | chr7_2:77636894-77636913 | None:intergenic | 25.0% |
| !! | AATTAACTCTGAGAAAAAGT+GGG | - | chr7_2:77637034-77637053 | Msa1078650:CDS | 25.0% |
| ! | CTTTATCATCTAATAACTCA+TGG | + | chr7_2:77637088-77637107 | None:intergenic | 25.0% |
| ! | TGAGTTATTAGATGATAAAG+AGG | - | chr7_2:77637088-77637107 | Msa1078650:CDS | 25.0% |
| !! | CTTTTGACAACAAAAGAATA+CGG | + | chr7_2:77637160-77637179 | None:intergenic | 25.0% |
| ! | TTAGAGAAAAAAATAGATGC+TGG | - | chr7_2:77637218-77637237 | Msa1078650:intron | 25.0% |
| ! | CTAATGTCTTTATCCAAAAA+TGG | + | chr7_2:77637251-77637270 | None:intergenic | 25.0% |
| ! | AATTTCATTCAATCTCAAAG+TGG | - | chr7_2:77637272-77637291 | Msa1078650:intron | 25.0% |
| ! | AATCGATGACAATAACAAAT+TGG | - | chr7_2:77637382-77637401 | Msa1078650:CDS | 25.0% |
| ! | ACAAATTGGAGCATATTATT+TGG | - | chr7_2:77637396-77637415 | Msa1078650:CDS | 25.0% |
| ! | CAAATTGGAGCATATTATTT+GGG | - | chr7_2:77637397-77637416 | Msa1078650:CDS | 25.0% |
| ! | GCTATCATTTCTCAATAAAT+TGG | - | chr7_2:77637632-77637651 | Msa1078650:CDS | 25.0% |
| !!! | ACTTTTCTTAGTTTTGTCAA+AGG | - | chr7_2:77637694-77637713 | Msa1078650:CDS | 25.0% |
| !! | CAAAACATGCATTTTGTATA+TGG | - | chr7_2:77637791-77637810 | Msa1078650:CDS | 25.0% |
| ! | AATCATCTTCACATTCTAAA+TGG | + | chr7_2:77637903-77637922 | None:intergenic | 25.0% |
| ! | CAAATCTATTAAGAATCAGT+CGG | - | chr7_2:77636860-77636879 | Msa1078650:CDS | 25.0% |
| !! | TCTCTTTTATAAACACCTAA+TGG | + | chr7_2:77636894-77636913 | None:intergenic | 25.0% |
| !! | AATTAACTCTGAGAAAAAGT+GGG | - | chr7_2:77637034-77637053 | Msa1078650:CDS | 25.0% |
| ! | CTTTATCATCTAATAACTCA+TGG | + | chr7_2:77637088-77637107 | None:intergenic | 25.0% |
| ! | TGAGTTATTAGATGATAAAG+AGG | - | chr7_2:77637088-77637107 | Msa1078650:CDS | 25.0% |
| !! | CTTTTGACAACAAAAGAATA+CGG | + | chr7_2:77637160-77637179 | None:intergenic | 25.0% |
| ! | TTAGAGAAAAAAATAGATGC+TGG | - | chr7_2:77637218-77637237 | Msa1078650:intron | 25.0% |
| ! | CTAATGTCTTTATCCAAAAA+TGG | + | chr7_2:77637251-77637270 | None:intergenic | 25.0% |
| ! | AATTTCATTCAATCTCAAAG+TGG | - | chr7_2:77637272-77637291 | Msa1078650:intron | 25.0% |
| ! | AATCGATGACAATAACAAAT+TGG | - | chr7_2:77637382-77637401 | Msa1078650:CDS | 25.0% |
| ! | ACAAATTGGAGCATATTATT+TGG | - | chr7_2:77637396-77637415 | Msa1078650:CDS | 25.0% |
| ! | CAAATTGGAGCATATTATTT+GGG | - | chr7_2:77637397-77637416 | Msa1078650:CDS | 25.0% |
| ! | GCTATCATTTCTCAATAAAT+TGG | - | chr7_2:77637632-77637651 | Msa1078650:CDS | 25.0% |
| !!! | ACTTTTCTTAGTTTTGTCAA+AGG | - | chr7_2:77637694-77637713 | Msa1078650:CDS | 25.0% |
| !! | CAAAACATGCATTTTGTATA+TGG | - | chr7_2:77637791-77637810 | Msa1078650:CDS | 25.0% |
| ! | AATCATCTTCACATTCTAAA+TGG | + | chr7_2:77637903-77637922 | None:intergenic | 25.0% |
| ATAATGAAGTGGAAGGTAAA+AGG | - | chr7_2:77636955-77636974 | Msa1078650:CDS | 30.0% | |
| TAATTGTGGTGCAAAATTGT+TGG | - | chr7_2:77636998-77637017 | Msa1078650:CDS | 30.0% | |
| ! | CAATTAACTCTGAGAAAAAG+TGG | - | chr7_2:77637033-77637052 | Msa1078650:CDS | 30.0% |
| !! | ATTCTTTTGTTGTCAAAAGC+TGG | - | chr7_2:77637161-77637180 | Msa1078650:intron | 30.0% |
| ATTCAATCTCAAAGTGGTAT+TGG | - | chr7_2:77637278-77637297 | Msa1078650:intron | 30.0% | |
| GTAACGATTTATTCGATAAG+TGG | + | chr7_2:77637480-77637499 | None:intergenic | 30.0% | |
| TAGAACACAACCAAAGAAAA+TGG | + | chr7_2:77637549-77637568 | None:intergenic | 30.0% | |
| AGAAGATTTCTTCCTTTACA+TGG | - | chr7_2:77637579-77637598 | Msa1078650:CDS | 30.0% | |
| GAAGATTTCTTCCTTTACAT+GGG | - | chr7_2:77637580-77637599 | Msa1078650:CDS | 30.0% | |
| TGATCTGTAAGAATTGTTTG+TGG | + | chr7_2:77637727-77637746 | None:intergenic | 30.0% | |
| AATGAAAGAAGCTATTGCAA+TGG | - | chr7_2:77637756-77637775 | Msa1078650:CDS | 30.0% | |
| ! | CAAAATGCATGTTTTGTGTT+TGG | + | chr7_2:77637787-77637806 | None:intergenic | 30.0% |
| ! | ATTTTGTATATGGCATATCC+TGG | - | chr7_2:77637801-77637820 | Msa1078650:CDS | 30.0% |
| ! | AATGTGAAGATGATTTTGAG+AGG | - | chr7_2:77637908-77637927 | Msa1078650:CDS | 30.0% |
| !! | ATGTGAAGATGATTTTGAGA+GGG | - | chr7_2:77637909-77637928 | Msa1078650:CDS | 30.0% |
| TAATATATTGTTGTGCAGGT+TGG | - | chr7_2:77638213-77638232 | Msa1078650:CDS | 30.0% | |
| AATATATTGTTGTGCAGGTT+GGG | - | chr7_2:77638214-77638233 | Msa1078650:CDS | 30.0% | |
| GTTAACATTAGAAATCAAGC+TGG | - | chr7_2:77638243-77638262 | Msa1078650:CDS | 30.0% | |
| ! | TGAATCAACTTAAAGGCATA+AGG | + | chr7_2:77638358-77638377 | None:intergenic | 30.0% |
| CTCATGTTGAATCAACTTAA+AGG | + | chr7_2:77638365-77638384 | None:intergenic | 30.0% | |
| TGAGTTGTCTACAAAATATG+CGG | - | chr7_2:77638387-77638406 | Msa1078650:CDS | 30.0% | |
| !! | AACAATGGATTGATTCAAAG+CGG | + | chr7_2:77638471-77638490 | None:intergenic | 30.0% |
| ! | TGCAAGGAATTTGAATTTTC+TGG | - | chr7_2:77638493-77638512 | Msa1078650:CDS | 30.0% |
| ! | GCAAGGAATTTGAATTTTCT+GGG | - | chr7_2:77638494-77638513 | Msa1078650:CDS | 30.0% |
| TTAATCATGTGACTAGATGT+TGG | + | chr7_2:77638622-77638641 | None:intergenic | 30.0% | |
| AGTCACATGATTAACAACAA+TGG | - | chr7_2:77638628-77638647 | Msa1078650:CDS | 30.0% | |
| TAAGGACCTAAACTTAACAA+GGG | + | chr7_2:77638659-77638678 | None:intergenic | 30.0% | |
| TTAAGGACCTAAACTTAACA+AGG | + | chr7_2:77638660-77638679 | None:intergenic | 30.0% | |
| ! | ACCAAATTTTCTTGGATTTC+AGG | + | chr7_2:77638778-77638797 | None:intergenic | 30.0% |
| TGAAATCCAAGAAAATTTGG+TGG | - | chr7_2:77638777-77638796 | Msa1078650:CDS | 30.0% | |
| GAAATCCAAGAAAATTTGGT+GGG | - | chr7_2:77638778-77638797 | Msa1078650:CDS | 30.0% | |
| ACATTCAACTCATCATTATC+TGG | + | chr7_2:77638820-77638839 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTTTTGAAGGTAA+AGG | + | chr7_2:77638850-77638869 | None:intergenic | 30.0% |
| CCTTTACCTTCAAAAACAAA+AGG | - | chr7_2:77638847-77638866 | Msa1078650:CDS | 30.0% | |
| TACATATTAGGAGATTGAGA+AGG | + | chr7_2:77639009-77639028 | None:intergenic | 30.0% | |
| ATAATGAAGTGGAAGGTAAA+AGG | - | chr7_2:77636955-77636974 | Msa1078650:CDS | 30.0% | |
| TAATTGTGGTGCAAAATTGT+TGG | - | chr7_2:77636998-77637017 | Msa1078650:CDS | 30.0% | |
| ! | CAATTAACTCTGAGAAAAAG+TGG | - | chr7_2:77637033-77637052 | Msa1078650:CDS | 30.0% |
| !! | ATTCTTTTGTTGTCAAAAGC+TGG | - | chr7_2:77637161-77637180 | Msa1078650:intron | 30.0% |
| ATTCAATCTCAAAGTGGTAT+TGG | - | chr7_2:77637278-77637297 | Msa1078650:intron | 30.0% | |
| GTAACGATTTATTCGATAAG+TGG | + | chr7_2:77637480-77637499 | None:intergenic | 30.0% | |
| TAGAACACAACCAAAGAAAA+TGG | + | chr7_2:77637549-77637568 | None:intergenic | 30.0% | |
| AGAAGATTTCTTCCTTTACA+TGG | - | chr7_2:77637579-77637598 | Msa1078650:CDS | 30.0% | |
| GAAGATTTCTTCCTTTACAT+GGG | - | chr7_2:77637580-77637599 | Msa1078650:CDS | 30.0% | |
| TGATCTGTAAGAATTGTTTG+TGG | + | chr7_2:77637727-77637746 | None:intergenic | 30.0% | |
| AATGAAAGAAGCTATTGCAA+TGG | - | chr7_2:77637756-77637775 | Msa1078650:CDS | 30.0% | |
| ! | CAAAATGCATGTTTTGTGTT+TGG | + | chr7_2:77637787-77637806 | None:intergenic | 30.0% |
| ! | ATTTTGTATATGGCATATCC+TGG | - | chr7_2:77637801-77637820 | Msa1078650:CDS | 30.0% |
| ! | AATGTGAAGATGATTTTGAG+AGG | - | chr7_2:77637908-77637927 | Msa1078650:CDS | 30.0% |
| !! | ATGTGAAGATGATTTTGAGA+GGG | - | chr7_2:77637909-77637928 | Msa1078650:CDS | 30.0% |
| TAATATATTGTTGTGCAGGT+TGG | - | chr7_2:77638213-77638232 | Msa1078650:CDS | 30.0% | |
| AATATATTGTTGTGCAGGTT+GGG | - | chr7_2:77638214-77638233 | Msa1078650:CDS | 30.0% | |
| GTTAACATTAGAAATCAAGC+TGG | - | chr7_2:77638243-77638262 | Msa1078650:CDS | 30.0% | |
| ! | TGAATCAACTTAAAGGCATA+AGG | + | chr7_2:77638358-77638377 | None:intergenic | 30.0% |
| CTCATGTTGAATCAACTTAA+AGG | + | chr7_2:77638365-77638384 | None:intergenic | 30.0% | |
| TGAGTTGTCTACAAAATATG+CGG | - | chr7_2:77638387-77638406 | Msa1078650:CDS | 30.0% | |
| !! | AACAATGGATTGATTCAAAG+CGG | + | chr7_2:77638471-77638490 | None:intergenic | 30.0% |
| ! | TGCAAGGAATTTGAATTTTC+TGG | - | chr7_2:77638493-77638512 | Msa1078650:CDS | 30.0% |
| ! | GCAAGGAATTTGAATTTTCT+GGG | - | chr7_2:77638494-77638513 | Msa1078650:CDS | 30.0% |
| TTAATCATGTGACTAGATGT+TGG | + | chr7_2:77638622-77638641 | None:intergenic | 30.0% | |
| AGTCACATGATTAACAACAA+TGG | - | chr7_2:77638628-77638647 | Msa1078650:CDS | 30.0% | |
| TAAGGACCTAAACTTAACAA+GGG | + | chr7_2:77638659-77638678 | None:intergenic | 30.0% | |
| TTAAGGACCTAAACTTAACA+AGG | + | chr7_2:77638660-77638679 | None:intergenic | 30.0% | |
| ! | ACCAAATTTTCTTGGATTTC+AGG | + | chr7_2:77638778-77638797 | None:intergenic | 30.0% |
| TGAAATCCAAGAAAATTTGG+TGG | - | chr7_2:77638777-77638796 | Msa1078650:CDS | 30.0% | |
| GAAATCCAAGAAAATTTGGT+GGG | - | chr7_2:77638778-77638797 | Msa1078650:CDS | 30.0% | |
| ACATTCAACTCATCATTATC+TGG | + | chr7_2:77638820-77638839 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTTTTGAAGGTAA+AGG | + | chr7_2:77638850-77638869 | None:intergenic | 30.0% |
| CCTTTACCTTCAAAAACAAA+AGG | - | chr7_2:77638847-77638866 | Msa1078650:CDS | 30.0% | |
| TACATATTAGGAGATTGAGA+AGG | + | chr7_2:77639009-77639028 | None:intergenic | 30.0% | |
| TTCATCATCTTCATGTTCCA+AGG | + | chr7_2:77636661-77636680 | None:intergenic | 35.0% | |
| AACACCATCATCAATGTGAT+TGG | + | chr7_2:77636739-77636758 | None:intergenic | 35.0% | |
| ! | GATGATGGTGTTCTTTATGA+AGG | - | chr7_2:77636747-77636766 | Msa1078650:CDS | 35.0% |
| TGGTGTTCTTTATGAAGGAA+AGG | - | chr7_2:77636752-77636771 | Msa1078650:CDS | 35.0% | |
| ! | GGTATTTAACAGTGATGATG+AGG | - | chr7_2:77636773-77636792 | Msa1078650:CDS | 35.0% |
| ATCTATTAAGAATCAGTCGG+AGG | - | chr7_2:77636863-77636882 | Msa1078650:CDS | 35.0% | |
| GACAAAGATAATGAAGTGGA+AGG | - | chr7_2:77636948-77636967 | Msa1078650:CDS | 35.0% | |
| AAGTGGAAGGTAAAAGGAAA+CGG | - | chr7_2:77636961-77636980 | Msa1078650:CDS | 35.0% | |
| AAGTCGTCAAGATGTAATTG+TGG | - | chr7_2:77636984-77637003 | Msa1078650:CDS | 35.0% | |
| ! | TGCTGGAAATCTTCCATTTT+TGG | - | chr7_2:77637235-77637254 | Msa1078650:intron | 35.0% |
| GAGCATATTATTTGGGCATT+TGG | - | chr7_2:77637404-77637423 | Msa1078650:intron | 35.0% | |
| ATTCGAGCATATGATGCTTT+CGG | - | chr7_2:77637434-77637453 | Msa1078650:intron | 35.0% | |
| ! | CATGGCAATTCCATTTTCTT+TGG | - | chr7_2:77637536-77637555 | Msa1078650:CDS | 35.0% |
| ! | TTCCTTTACATGGGCTATAA+AGG | - | chr7_2:77637589-77637608 | Msa1078650:CDS | 35.0% |
| TACCTTTATAGCCCATGTAA+AGG | + | chr7_2:77637594-77637613 | None:intergenic | 35.0% | |
| AATGGAAGAGAAAACCAAGT+TGG | + | chr7_2:77637835-77637854 | None:intergenic | 35.0% | |
| !! | ACTTGGTTTTCTCTTCCATT+AGG | - | chr7_2:77637835-77637854 | Msa1078650:CDS | 35.0% |
| !! | CTTGGTTTTCTCTTCCATTA+GGG | - | chr7_2:77637836-77637855 | Msa1078650:CDS | 35.0% |
| !! | AAGATGATTTTGAGAGGGAA+TGG | - | chr7_2:77637914-77637933 | Msa1078650:CDS | 35.0% |
| !! | TGAAGAGTTTTGTCTTAGCA+AGG | - | chr7_2:77637948-77637967 | Msa1078650:intron | 35.0% |
| ! | TCTATTCGCTTCGTCAATTT+TGG | - | chr7_2:77637989-77638008 | Msa1078650:intron | 35.0% |
| ! | CTATTCGCTTCGTCAATTTT+GGG | - | chr7_2:77637990-77638009 | Msa1078650:intron | 35.0% |
| !!! | TTGAAGGACTTCTTTTTTGC+TGG | - | chr7_2:77638024-77638043 | Msa1078650:intron | 35.0% |
| !! | GAAATCAGTCAGACTTGTTT+TGG | + | chr7_2:77638109-77638128 | None:intergenic | 35.0% |
| ATATATTGTTGTGCAGGTTG+GGG | - | chr7_2:77638215-77638234 | Msa1078650:CDS | 35.0% | |
| ! | TAGAACGTGTTTTCCTATTG+AGG | - | chr7_2:77638308-77638327 | Msa1078650:CDS | 35.0% |
| ATGCAAACATGTTCCTCAAT+AGG | + | chr7_2:77638324-77638343 | None:intergenic | 35.0% | |
| ATCAATCCATTGTTCTTGCA+AGG | - | chr7_2:77638477-77638496 | Msa1078650:CDS | 35.0% | |
| CAAATTCCTTGCAAGAACAA+TGG | + | chr7_2:77638486-77638505 | None:intergenic | 35.0% | |
| CACATGATTAACAACAATGG+TGG | - | chr7_2:77638631-77638650 | Msa1078650:CDS | 35.0% | |
| ! | TTCTCGTTCTTTTGTCTTCA+AGG | + | chr7_2:77638704-77638723 | None:intergenic | 35.0% |
| !! | CATGGCTTTAATCACTTGAA+TGG | + | chr7_2:77638755-77638774 | None:intergenic | 35.0% |
| ! | ATTTTCTTGGATTTCAGGCA+TGG | + | chr7_2:77638773-77638792 | None:intergenic | 35.0% |
| GCCTGAAATCCAAGAAAATT+TGG | - | chr7_2:77638774-77638793 | Msa1078650:CDS | 35.0% | |
| AAAACAAAAGGTCGACCAAA+AGG | - | chr7_2:77638859-77638878 | Msa1078650:CDS | 35.0% | |
| CATTGTCATGTTCCAAATTG+CGG | - | chr7_2:77638925-77638944 | Msa1078650:CDS | 35.0% | |
| TTCATCATCTTCATGTTCCA+AGG | + | chr7_2:77636661-77636680 | None:intergenic | 35.0% | |
| AACACCATCATCAATGTGAT+TGG | + | chr7_2:77636739-77636758 | None:intergenic | 35.0% | |
| ! | GATGATGGTGTTCTTTATGA+AGG | - | chr7_2:77636747-77636766 | Msa1078650:CDS | 35.0% |
| TGGTGTTCTTTATGAAGGAA+AGG | - | chr7_2:77636752-77636771 | Msa1078650:CDS | 35.0% | |
| ! | GGTATTTAACAGTGATGATG+AGG | - | chr7_2:77636773-77636792 | Msa1078650:CDS | 35.0% |
| ATCTATTAAGAATCAGTCGG+AGG | - | chr7_2:77636863-77636882 | Msa1078650:CDS | 35.0% | |
| GACAAAGATAATGAAGTGGA+AGG | - | chr7_2:77636948-77636967 | Msa1078650:CDS | 35.0% | |
| AAGTGGAAGGTAAAAGGAAA+CGG | - | chr7_2:77636961-77636980 | Msa1078650:CDS | 35.0% | |
| AAGTCGTCAAGATGTAATTG+TGG | - | chr7_2:77636984-77637003 | Msa1078650:CDS | 35.0% | |
| ! | TGCTGGAAATCTTCCATTTT+TGG | - | chr7_2:77637235-77637254 | Msa1078650:intron | 35.0% |
| GAGCATATTATTTGGGCATT+TGG | - | chr7_2:77637404-77637423 | Msa1078650:intron | 35.0% | |
| ATTCGAGCATATGATGCTTT+CGG | - | chr7_2:77637434-77637453 | Msa1078650:intron | 35.0% | |
| ! | CATGGCAATTCCATTTTCTT+TGG | - | chr7_2:77637536-77637555 | Msa1078650:CDS | 35.0% |
| ! | TTCCTTTACATGGGCTATAA+AGG | - | chr7_2:77637589-77637608 | Msa1078650:CDS | 35.0% |
| TACCTTTATAGCCCATGTAA+AGG | + | chr7_2:77637594-77637613 | None:intergenic | 35.0% | |
| AATGGAAGAGAAAACCAAGT+TGG | + | chr7_2:77637835-77637854 | None:intergenic | 35.0% | |
| !! | ACTTGGTTTTCTCTTCCATT+AGG | - | chr7_2:77637835-77637854 | Msa1078650:CDS | 35.0% |
| !! | CTTGGTTTTCTCTTCCATTA+GGG | - | chr7_2:77637836-77637855 | Msa1078650:CDS | 35.0% |
| !! | AAGATGATTTTGAGAGGGAA+TGG | - | chr7_2:77637914-77637933 | Msa1078650:CDS | 35.0% |
| !! | TGAAGAGTTTTGTCTTAGCA+AGG | - | chr7_2:77637948-77637967 | Msa1078650:intron | 35.0% |
| ! | TCTATTCGCTTCGTCAATTT+TGG | - | chr7_2:77637989-77638008 | Msa1078650:intron | 35.0% |
| ! | CTATTCGCTTCGTCAATTTT+GGG | - | chr7_2:77637990-77638009 | Msa1078650:intron | 35.0% |
| !!! | TTGAAGGACTTCTTTTTTGC+TGG | - | chr7_2:77638024-77638043 | Msa1078650:intron | 35.0% |
| !! | GAAATCAGTCAGACTTGTTT+TGG | + | chr7_2:77638109-77638128 | None:intergenic | 35.0% |
| ATATATTGTTGTGCAGGTTG+GGG | - | chr7_2:77638215-77638234 | Msa1078650:CDS | 35.0% | |
| ! | TAGAACGTGTTTTCCTATTG+AGG | - | chr7_2:77638308-77638327 | Msa1078650:CDS | 35.0% |
| ATGCAAACATGTTCCTCAAT+AGG | + | chr7_2:77638324-77638343 | None:intergenic | 35.0% | |
| ATCAATCCATTGTTCTTGCA+AGG | - | chr7_2:77638477-77638496 | Msa1078650:CDS | 35.0% | |
| CAAATTCCTTGCAAGAACAA+TGG | + | chr7_2:77638486-77638505 | None:intergenic | 35.0% | |
| CACATGATTAACAACAATGG+TGG | - | chr7_2:77638631-77638650 | Msa1078650:CDS | 35.0% | |
| ! | TTCTCGTTCTTTTGTCTTCA+AGG | + | chr7_2:77638704-77638723 | None:intergenic | 35.0% |
| !! | CATGGCTTTAATCACTTGAA+TGG | + | chr7_2:77638755-77638774 | None:intergenic | 35.0% |
| ! | ATTTTCTTGGATTTCAGGCA+TGG | + | chr7_2:77638773-77638792 | None:intergenic | 35.0% |
| GCCTGAAATCCAAGAAAATT+TGG | - | chr7_2:77638774-77638793 | Msa1078650:CDS | 35.0% | |
| AAAACAAAAGGTCGACCAAA+AGG | - | chr7_2:77638859-77638878 | Msa1078650:CDS | 35.0% | |
| CATTGTCATGTTCCAAATTG+CGG | - | chr7_2:77638925-77638944 | Msa1078650:CDS | 35.0% | |
| GAAGAAATGAGGCCATTGAT+GGG | - | chr7_2:77636634-77636653 | Msa1078650:CDS | 40.0% | |
| !! | TCATCAATGTGATTGGCTTG+AGG | + | chr7_2:77636732-77636751 | None:intergenic | 40.0% |
| CAAGCCAATCACATTGATGA+TGG | - | chr7_2:77636732-77636751 | Msa1078650:CDS | 40.0% | |
| TGCTTGTTTGCGCGAAAAAA+TGG | - | chr7_2:77636810-77636829 | Msa1078650:CDS | 40.0% | |
| CGCAGACAAAGATAATGAAG+TGG | - | chr7_2:77636944-77636963 | Msa1078650:CDS | 40.0% | |
| ! | TAACTCTGAGAAAAAGTGGG+TGG | - | chr7_2:77637037-77637056 | Msa1078650:CDS | 40.0% |
| ATACGGTCTTGATCAATAGC+TGG | + | chr7_2:77637143-77637162 | None:intergenic | 40.0% | |
| GCAATAGCTTCTTTCATTGC+AGG | + | chr7_2:77637754-77637773 | None:intergenic | 40.0% | |
| TCATCATATCTCGACCCTAA+TGG | + | chr7_2:77637853-77637872 | None:intergenic | 40.0% | |
| TGAGAGGGAATGGAAATTGA+TGG | - | chr7_2:77637924-77637943 | Msa1078650:CDS | 40.0% | |
| GCGAATAGAGCAAGACAATA+TGG | + | chr7_2:77637978-77637997 | None:intergenic | 40.0% | |
| ! | TTGGGCACTAGCTTATTTGA+AGG | - | chr7_2:77638008-77638027 | Msa1078650:intron | 40.0% |
| TTTGCTGGAATGACTACAAC+TGG | - | chr7_2:77638039-77638058 | Msa1078650:intron | 40.0% | |
| ! | TACGAGGATTGTGGTACTTT+TGG | + | chr7_2:77638287-77638306 | None:intergenic | 40.0% |
| ACGTTCTAATACGAGGATTG+TGG | + | chr7_2:77638296-77638315 | None:intergenic | 40.0% | |
| GGAAAACACGTTCTAATACG+AGG | + | chr7_2:77638303-77638322 | None:intergenic | 40.0% | |
| CGACATCATACCAAAAGTGA+CGG | - | chr7_2:77638442-77638461 | Msa1078650:CDS | 40.0% | |
| GAAGAGGAAGATACTTGGAA+GGG | + | chr7_2:77638573-77638592 | None:intergenic | 40.0% | |
| GAAGACAAAAGAACGAGAAC+AGG | - | chr7_2:77638705-77638724 | Msa1078650:CDS | 40.0% | |
| AATGGCTTTCTCTAACTCTC+TGG | + | chr7_2:77638737-77638756 | None:intergenic | 40.0% | |
| ! | CAACACCCACCAAATTTTCT+TGG | + | chr7_2:77638786-77638805 | None:intergenic | 40.0% |
| !! | TTTGGTGGGTGTTGATTCTA+CGG | - | chr7_2:77638792-77638811 | Msa1078650:CDS | 40.0% |
| !!! | GGTCGACCTTTTGTTTTTGA+AGG | + | chr7_2:77638856-77638875 | None:intergenic | 40.0% |
| !!! | CCTTTTAGCCTTGATCCTTT+TGG | + | chr7_2:77638877-77638896 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGGCTAAA+AGG | - | chr7_2:77638874-77638893 | Msa1078650:CDS | 40.0% | |
| AAAGGATCAAGGCTAAAAGG+AGG | - | chr7_2:77638877-77638896 | Msa1078650:CDS | 40.0% | |
| ! | TTTGGAACATGACAATGACG+AGG | + | chr7_2:77638922-77638941 | None:intergenic | 40.0% |
| TGATCAATTCCACCGCAATT+TGG | + | chr7_2:77638940-77638959 | None:intergenic | 40.0% | |
| GAAGAAATGAGGCCATTGAT+GGG | - | chr7_2:77636634-77636653 | Msa1078650:CDS | 40.0% | |
| !! | TCATCAATGTGATTGGCTTG+AGG | + | chr7_2:77636732-77636751 | None:intergenic | 40.0% |
| CAAGCCAATCACATTGATGA+TGG | - | chr7_2:77636732-77636751 | Msa1078650:CDS | 40.0% | |
| TGCTTGTTTGCGCGAAAAAA+TGG | - | chr7_2:77636810-77636829 | Msa1078650:CDS | 40.0% | |
| CGCAGACAAAGATAATGAAG+TGG | - | chr7_2:77636944-77636963 | Msa1078650:CDS | 40.0% | |
| ! | TAACTCTGAGAAAAAGTGGG+TGG | - | chr7_2:77637037-77637056 | Msa1078650:CDS | 40.0% |
| ATACGGTCTTGATCAATAGC+TGG | + | chr7_2:77637143-77637162 | None:intergenic | 40.0% | |
| GCAATAGCTTCTTTCATTGC+AGG | + | chr7_2:77637754-77637773 | None:intergenic | 40.0% | |
| TCATCATATCTCGACCCTAA+TGG | + | chr7_2:77637853-77637872 | None:intergenic | 40.0% | |
| TGAGAGGGAATGGAAATTGA+TGG | - | chr7_2:77637924-77637943 | Msa1078650:CDS | 40.0% | |
| GCGAATAGAGCAAGACAATA+TGG | + | chr7_2:77637978-77637997 | None:intergenic | 40.0% | |
| ! | TTGGGCACTAGCTTATTTGA+AGG | - | chr7_2:77638008-77638027 | Msa1078650:intron | 40.0% |
| TTTGCTGGAATGACTACAAC+TGG | - | chr7_2:77638039-77638058 | Msa1078650:intron | 40.0% | |
| ! | TACGAGGATTGTGGTACTTT+TGG | + | chr7_2:77638287-77638306 | None:intergenic | 40.0% |
| ACGTTCTAATACGAGGATTG+TGG | + | chr7_2:77638296-77638315 | None:intergenic | 40.0% | |
| GGAAAACACGTTCTAATACG+AGG | + | chr7_2:77638303-77638322 | None:intergenic | 40.0% | |
| CGACATCATACCAAAAGTGA+CGG | - | chr7_2:77638442-77638461 | Msa1078650:CDS | 40.0% | |
| GAAGAGGAAGATACTTGGAA+GGG | + | chr7_2:77638573-77638592 | None:intergenic | 40.0% | |
| GAAGACAAAAGAACGAGAAC+AGG | - | chr7_2:77638705-77638724 | Msa1078650:CDS | 40.0% | |
| AATGGCTTTCTCTAACTCTC+TGG | + | chr7_2:77638737-77638756 | None:intergenic | 40.0% | |
| ! | CAACACCCACCAAATTTTCT+TGG | + | chr7_2:77638786-77638805 | None:intergenic | 40.0% |
| !! | TTTGGTGGGTGTTGATTCTA+CGG | - | chr7_2:77638792-77638811 | Msa1078650:CDS | 40.0% |
| !!! | GGTCGACCTTTTGTTTTTGA+AGG | + | chr7_2:77638856-77638875 | None:intergenic | 40.0% |
| !!! | CCTTTTAGCCTTGATCCTTT+TGG | + | chr7_2:77638877-77638896 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGGCTAAA+AGG | - | chr7_2:77638874-77638893 | Msa1078650:CDS | 40.0% | |
| AAAGGATCAAGGCTAAAAGG+AGG | - | chr7_2:77638877-77638896 | Msa1078650:CDS | 40.0% | |
| ! | TTTGGAACATGACAATGACG+AGG | + | chr7_2:77638922-77638941 | None:intergenic | 40.0% |
| TGATCAATTCCACCGCAATT+TGG | + | chr7_2:77638940-77638959 | None:intergenic | 40.0% | |
| GGAAGAAATGAGGCCATTGA+TGG | - | chr7_2:77636633-77636652 | Msa1078650:CDS | 45.0% | |
| ATGTTCCAAGGACCCATCAA+TGG | + | chr7_2:77636649-77636668 | None:intergenic | 45.0% | |
| !! | ATGTGATTGGCTTGAGGCAA+AGG | + | chr7_2:77636726-77636745 | None:intergenic | 45.0% |
| CAGTCGGAGGATAATCCATT+AGG | - | chr7_2:77636876-77636895 | Msa1078650:CDS | 45.0% | |
| ! | GAGTTTGTTTGTCATCGTGC+TGG | - | chr7_2:77636912-77636931 | Msa1078650:CDS | 45.0% |
| GCTGGAATACTTCGATAAGC+AGG | + | chr7_2:77637125-77637144 | None:intergenic | 45.0% | |
| AATCGTTACGACATGCCACT+TGG | - | chr7_2:77637491-77637510 | Msa1078650:intron | 45.0% | |
| ! | ACGACATGCCACTTGGAATA+TGG | - | chr7_2:77637498-77637517 | Msa1078650:intron | 45.0% |
| ! | CGACATGCCACTTGGAATAT+GGG | - | chr7_2:77637499-77637518 | Msa1078650:intron | 45.0% |
| ! | ATGCCACTTGGAATATGGGT+TGG | - | chr7_2:77637503-77637522 | Msa1078650:intron | 45.0% |
| ACTCCAACCCATATTCCAAG+TGG | + | chr7_2:77637509-77637528 | None:intergenic | 45.0% | |
| ! | TGGGTTGGAGTCGATAATCA+TGG | - | chr7_2:77637518-77637537 | Msa1078650:CDS | 45.0% |
| TCCTGGCAAAGTTACCAACT+TGG | - | chr7_2:77637818-77637837 | Msa1078650:CDS | 45.0% | |
| !! | ACCAAGTTGGTAACTTTGCC+AGG | + | chr7_2:77637822-77637841 | None:intergenic | 45.0% |
| CATCATACCAAAAGTGACGG+AGG | - | chr7_2:77638445-77638464 | Msa1078650:CDS | 45.0% | |
| AGGAAGATACTTGGAAGGGA+GGG | + | chr7_2:77638569-77638588 | None:intergenic | 45.0% | |
| CGAAGAGGAAGATACTTGGA+AGG | + | chr7_2:77638574-77638593 | None:intergenic | 45.0% | |
| CCAACGAAGAGGAAGATACT+TGG | + | chr7_2:77638578-77638597 | None:intergenic | 45.0% | |
| CCAAGTATCTTCCTCTTCGT+TGG | - | chr7_2:77638575-77638594 | Msa1078650:CDS | 45.0% | |
| GTTTCTTGTCTCCAACGAAG+AGG | + | chr7_2:77638589-77638608 | None:intergenic | 45.0% | |
| GTGGCTCCCTTGTTAAGTTT+AGG | - | chr7_2:77638650-77638669 | Msa1078650:CDS | 45.0% | |
| AAGGTCGACCAAAAGGATCA+AGG | - | chr7_2:77638866-77638885 | Msa1078650:CDS | 45.0% | |
| TGTCATGTTCCAAATTGCGG+TGG | - | chr7_2:77638928-77638947 | Msa1078650:CDS | 45.0% | |
| GTGGAATTGATCATGACTCG+AGG | - | chr7_2:77638947-77638966 | Msa1078650:CDS | 45.0% | |
| GGAAGAAATGAGGCCATTGA+TGG | - | chr7_2:77636633-77636652 | Msa1078650:CDS | 45.0% | |
| ATGTTCCAAGGACCCATCAA+TGG | + | chr7_2:77636649-77636668 | None:intergenic | 45.0% | |
| !! | ATGTGATTGGCTTGAGGCAA+AGG | + | chr7_2:77636726-77636745 | None:intergenic | 45.0% |
| CAGTCGGAGGATAATCCATT+AGG | - | chr7_2:77636876-77636895 | Msa1078650:CDS | 45.0% | |
| ! | GAGTTTGTTTGTCATCGTGC+TGG | - | chr7_2:77636912-77636931 | Msa1078650:CDS | 45.0% |
| GCTGGAATACTTCGATAAGC+AGG | + | chr7_2:77637125-77637144 | None:intergenic | 45.0% | |
| AATCGTTACGACATGCCACT+TGG | - | chr7_2:77637491-77637510 | Msa1078650:intron | 45.0% | |
| ! | ACGACATGCCACTTGGAATA+TGG | - | chr7_2:77637498-77637517 | Msa1078650:intron | 45.0% |
| ! | CGACATGCCACTTGGAATAT+GGG | - | chr7_2:77637499-77637518 | Msa1078650:intron | 45.0% |
| ! | ATGCCACTTGGAATATGGGT+TGG | - | chr7_2:77637503-77637522 | Msa1078650:intron | 45.0% |
| ACTCCAACCCATATTCCAAG+TGG | + | chr7_2:77637509-77637528 | None:intergenic | 45.0% | |
| ! | TGGGTTGGAGTCGATAATCA+TGG | - | chr7_2:77637518-77637537 | Msa1078650:CDS | 45.0% |
| TCCTGGCAAAGTTACCAACT+TGG | - | chr7_2:77637818-77637837 | Msa1078650:CDS | 45.0% | |
| !! | ACCAAGTTGGTAACTTTGCC+AGG | + | chr7_2:77637822-77637841 | None:intergenic | 45.0% |
| CATCATACCAAAAGTGACGG+AGG | - | chr7_2:77638445-77638464 | Msa1078650:CDS | 45.0% | |
| AGGAAGATACTTGGAAGGGA+GGG | + | chr7_2:77638569-77638588 | None:intergenic | 45.0% | |
| CGAAGAGGAAGATACTTGGA+AGG | + | chr7_2:77638574-77638593 | None:intergenic | 45.0% | |
| CCAACGAAGAGGAAGATACT+TGG | + | chr7_2:77638578-77638597 | None:intergenic | 45.0% | |
| CCAAGTATCTTCCTCTTCGT+TGG | - | chr7_2:77638575-77638594 | Msa1078650:CDS | 45.0% | |
| GTTTCTTGTCTCCAACGAAG+AGG | + | chr7_2:77638589-77638608 | None:intergenic | 45.0% | |
| GTGGCTCCCTTGTTAAGTTT+AGG | - | chr7_2:77638650-77638669 | Msa1078650:CDS | 45.0% | |
| AAGGTCGACCAAAAGGATCA+AGG | - | chr7_2:77638866-77638885 | Msa1078650:CDS | 45.0% | |
| TGTCATGTTCCAAATTGCGG+TGG | - | chr7_2:77638928-77638947 | Msa1078650:CDS | 45.0% | |
| GTGGAATTGATCATGACTCG+AGG | - | chr7_2:77638947-77638966 | Msa1078650:CDS | 45.0% | |
| GTCATCGGAGGGAAGAAATG+AGG | - | chr7_2:77636623-77636642 | Msa1078650:CDS | 50.0% | |
| !! | ATGTTGTGGCTCTGGTACAG+TGG | + | chr7_2:77636700-77636719 | None:intergenic | 50.0% |
| ACTGTACCAGAGCCACAACA+TGG | - | chr7_2:77636699-77636718 | Msa1078650:CDS | 50.0% | |
| AAAGGTCCATGTTGTGGCTC+TGG | + | chr7_2:77636708-77636727 | None:intergenic | 50.0% | |
| TGAGGCAAAGGTCCATGTTG+TGG | + | chr7_2:77636714-77636733 | None:intergenic | 50.0% | |
| GAGGAAGATACTTGGAAGGG+AGG | + | chr7_2:77638570-77638589 | None:intergenic | 50.0% | |
| GTCATCGGAGGGAAGAAATG+AGG | - | chr7_2:77636623-77636642 | Msa1078650:CDS | 50.0% | |
| !! | ATGTTGTGGCTCTGGTACAG+TGG | + | chr7_2:77636700-77636719 | None:intergenic | 50.0% |
| ACTGTACCAGAGCCACAACA+TGG | - | chr7_2:77636699-77636718 | Msa1078650:CDS | 50.0% | |
| AAAGGTCCATGTTGTGGCTC+TGG | + | chr7_2:77636708-77636727 | None:intergenic | 50.0% | |
| TGAGGCAAAGGTCCATGTTG+TGG | + | chr7_2:77636714-77636733 | None:intergenic | 50.0% | |
| GAGGAAGATACTTGGAAGGG+AGG | + | chr7_2:77638570-77638589 | None:intergenic | 50.0% | |
| ! | TGAGGCCATTGATGGGTCCT+TGG | - | chr7_2:77636641-77636660 | Msa1078650:CDS | 55.0% |
| !! | AAAGCGGCCTCCGTCACTTT+TGG | + | chr7_2:77638455-77638474 | None:intergenic | 55.0% |
| ! | TGAGGCCATTGATGGGTCCT+TGG | - | chr7_2:77636641-77636660 | Msa1078650:CDS | 55.0% |
| !! | AAAGCGGCCTCCGTCACTTT+TGG | + | chr7_2:77638455-77638474 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 77636621 | 77639029 | 77636621 | ID=Msa1078650;Name=Msa1078650 |
| chr7_2 | mRNA | 77636621 | 77639029 | 77636621 | ID=Msa1078650-mRNA-1;Parent=Msa1078650;Name=Msa1078650-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.75|1|1|4|0|664 |
| chr7_2 | exon | 77638040 | 77639029 | 77638040 | ID=Msa1078650-mRNA-1:exon:19108;Parent=Msa1078650-mRNA-1 |
| chr7_2 | exon | 77637513 | 77637956 | 77637513 | ID=Msa1078650-mRNA-1:exon:19107;Parent=Msa1078650-mRNA-1 |
| chr7_2 | exon | 77637361 | 77637419 | 77637361 | ID=Msa1078650-mRNA-1:exon:19106;Parent=Msa1078650-mRNA-1 |
| chr7_2 | exon | 77636621 | 77637122 | 77636621 | ID=Msa1078650-mRNA-1:exon:19105;Parent=Msa1078650-mRNA-1 |
| chr7_2 | CDS | 77638040 | 77639029 | 77638040 | ID=Msa1078650-mRNA-1:cds;Parent=Msa1078650-mRNA-1 |
| chr7_2 | CDS | 77637513 | 77637956 | 77637513 | ID=Msa1078650-mRNA-1:cds;Parent=Msa1078650-mRNA-1 |
| chr7_2 | CDS | 77637361 | 77637419 | 77637361 | ID=Msa1078650-mRNA-1:cds;Parent=Msa1078650-mRNA-1 |
| chr7_2 | CDS | 77636621 | 77637122 | 77636621 | ID=Msa1078650-mRNA-1:cds;Parent=Msa1078650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
