Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079110 | XP_013449980.1 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 8.19e-43 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079110 | sp|Q7XLX6|S1FA2_ORYSJ | 65.000 | 80 | 21 | 1 | 1 | 73 | 1 | 80 | 7.37e-15 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079110 | A0A072U4F5 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 3.91e-43 | 143 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1079110 | TF | S1Fa-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079110 | MtrunA17_Chr7g0263871 | 100.000 | 73 | 0 | 0 | 1 | 73 | 1 | 73 | 7.53e-47 | 143 |
| Msa1079110 | MtrunA17_Chr7g0263831 | 85.897 | 78 | 6 | 1 | 1 | 73 | 7 | 84 | 2.20e-18 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079110 | AT2G37120.1 | 76.190 | 63 | 15 | 0 | 11 | 73 | 14 | 76 | 5.53e-15 | 63.2 |
| Msa1079110 | AT3G53370.1 | 80.000 | 60 | 12 | 0 | 14 | 73 | 17 | 76 | 1.77e-12 | 57.0 |
Find 28 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTGGGACAGGTTATT+TGG | 0.128418 | 7_2:-78130226 | Msa1079110:three_prime_UTR |
| TTGATTGTTCTCCTGGTTAT+TGG | 0.231388 | 7_2:-78130544 | Msa1079110:CDS |
| TAGTACTTTAGCAACATATT+TGG | 0.242741 | 7_2:-78130240 | Msa1079110:three_prime_UTR |
| AGTACTTTAGCAACATATTT+GGG | 0.342721 | 7_2:-78130239 | Msa1079110:three_prime_UTR |
| CCCAGGCTTGATTGTTCTCC+TGG | 0.358351 | 7_2:-78130551 | Msa1079110:CDS |
| GCTAAAGTACTAATTAATAT+AGG | 0.420604 | 7_2:+78130251 | None:intergenic |
| TGGGGAAATGTTTAGAATGC+TGG | 0.422488 | 7_2:-78130589 | Msa1079110:intron |
| CGCGGAGAAGCTTCAAGCTA+TGG | 0.466693 | 7_2:+78131831 | None:intergenic |
| GTTTAGAATGCTGGATCTCA+AGG | 0.468079 | 7_2:-78130580 | Msa1079110:intron |
| ACCAGGAGAACAATCAAGCC+TGG | 0.470447 | 7_2:+78130550 | None:intergenic |
| ATTGTTCTCCTGGTTATTGG+TGG | 0.489076 | 7_2:-78130541 | Msa1079110:CDS |
| TTGCTGTTGACATTTCTCAT+TGG | 0.497549 | 7_2:-78130517 | Msa1079110:CDS |
| AAGCAAGGAGTCTCTGCACC+TGG | 0.518649 | 7_2:-78130403 | Msa1079110:CDS |
| AAGCTTCTCCGCGTCAACCA+TGG | 0.519128 | 7_2:-78131821 | Msa1079110:exon |
| TTTAGCAACATATTTGGGAC+AGG | 0.520962 | 7_2:-78130234 | Msa1079110:three_prime_UTR |
| ATACAGTGCCTCTACTCTCC+AGG | 0.531169 | 7_2:+78130385 | None:intergenic |
| AGTTGAAAATCGTAAGAAAG+AGG | 0.533668 | 7_2:+78130177 | None:intergenic |
| TTGTTCTCCTGGTTATTGGT+GGG | 0.546594 | 7_2:-78130540 | Msa1079110:CDS |
| ATTTGGGACAGGTTATTTGG+TGG | 0.553725 | 7_2:-78130223 | Msa1079110:three_prime_UTR |
| GCTCTACGTTTATGCACAGA+AGG | 0.594297 | 7_2:-78130485 | Msa1079110:CDS |
| ACAGCAACCCACCAATAACC+AGG | 0.598951 | 7_2:+78130533 | None:intergenic |
| TCTGTCAATAAAACACAGGA+TGG | 0.607884 | 7_2:+78130281 | None:intergenic |
| CCAGGAGAACAATCAAGCCT+GGG | 0.608678 | 7_2:+78130551 | None:intergenic |
| GGATCTCAAGGGTTCAACCC+AGG | 0.613072 | 7_2:-78130568 | Msa1079110:CDS |
| TTTAGAATGCTGGATCTCAA+GGG | 0.619147 | 7_2:-78130579 | Msa1079110:intron |
| TTTATCGGCCATGGTTGACG+CGG | 0.638815 | 7_2:+78131813 | None:intergenic |
| TCTCTGCACCTGGAGAGTAG+AGG | 0.653251 | 7_2:-78130393 | Msa1079110:exon |
| ACTTTCTGTCAATAAAACAC+AGG | 0.678379 | 7_2:+78130277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACACTTAAATA+AGG | + | chr7_2:78131428-78131447 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACACTTAAATA+AGG | + | chr7_2:78131428-78131447 | None:intergenic | 10.0% |
| !! | AAATAAATAATGAAGAATGT+GGG | + | chr7_2:78130313-78130332 | None:intergenic | 15.0% |
| !! | AAAATAAATAATGAAGAATG+TGG | + | chr7_2:78130314-78130333 | None:intergenic | 15.0% |
| !! | GATCTATTCATAATTAAATT+AGG | - | chr7_2:78130497-78130516 | Msa1079110:CDS | 15.0% |
| !!! | ATTTTTTTTTATTCACATTC+AGG | - | chr7_2:78130520-78130539 | Msa1079110:CDS | 15.0% |
| !! | TTATTTGAGAATAACAATAA+GGG | + | chr7_2:78130878-78130897 | None:intergenic | 15.0% |
| !! | CAATAAAAAAATATTTCCAA+AGG | + | chr7_2:78131385-78131404 | None:intergenic | 15.0% |
| !! | AAATAAATAATGAAGAATGT+GGG | + | chr7_2:78130313-78130332 | None:intergenic | 15.0% |
| !! | AAAATAAATAATGAAGAATG+TGG | + | chr7_2:78130314-78130333 | None:intergenic | 15.0% |
| !! | GATCTATTCATAATTAAATT+AGG | - | chr7_2:78130497-78130516 | Msa1079110:CDS | 15.0% |
| !!! | ATTTTTTTTTATTCACATTC+AGG | - | chr7_2:78130520-78130539 | Msa1079110:CDS | 15.0% |
| !! | TTATTTGAGAATAACAATAA+GGG | + | chr7_2:78130878-78130897 | None:intergenic | 15.0% |
| !! | CAATAAAAAAATATTTCCAA+AGG | + | chr7_2:78131385-78131404 | None:intergenic | 15.0% |
| !! | AATCAAAAAATACAAACAAG+CGG | + | chr7_2:78130760-78130779 | None:intergenic | 20.0% |
| !! | CTTATTTGAGAATAACAATA+AGG | + | chr7_2:78130879-78130898 | None:intergenic | 20.0% |
| !!! | TTAATTTGAGAATGTTTTTG+TGG | + | chr7_2:78131038-78131057 | None:intergenic | 20.0% |
| !! | AGATTCTACTTTGAATATAA+TGG | - | chr7_2:78131099-78131118 | Msa1079110:intron | 20.0% |
| !! | GATTCTACTTTGAATATAAT+GGG | - | chr7_2:78131100-78131119 | Msa1079110:intron | 20.0% |
| !! | CATATTACTATTTGTATACA+TGG | - | chr7_2:78131317-78131336 | Msa1079110:intron | 20.0% |
| !!! | GCTAAAGTACTAATTAATAT+AGG | + | chr7_2:78131797-78131816 | None:intergenic | 20.0% |
| !! | AATCAAAAAATACAAACAAG+CGG | + | chr7_2:78130760-78130779 | None:intergenic | 20.0% |
| !! | CTTATTTGAGAATAACAATA+AGG | + | chr7_2:78130879-78130898 | None:intergenic | 20.0% |
| !!! | TTAATTTGAGAATGTTTTTG+TGG | + | chr7_2:78131038-78131057 | None:intergenic | 20.0% |
| !! | AGATTCTACTTTGAATATAA+TGG | - | chr7_2:78131099-78131118 | Msa1079110:intron | 20.0% |
| !! | GATTCTACTTTGAATATAAT+GGG | - | chr7_2:78131100-78131119 | Msa1079110:intron | 20.0% |
| !! | CATATTACTATTTGTATACA+TGG | - | chr7_2:78131317-78131336 | Msa1079110:intron | 20.0% |
| !!! | GCTAAAGTACTAATTAATAT+AGG | + | chr7_2:78131797-78131816 | None:intergenic | 20.0% |
| ! | TGTGACAGAGAAAAAATAAA+CGG | + | chr7_2:78130190-78130209 | None:intergenic | 25.0% |
| !!! | GGAATTGATTTGAAGAAAAT+CGG | + | chr7_2:78130292-78130311 | None:intergenic | 25.0% |
| ! | AAGACATAGAATATGAGAAA+GGG | + | chr7_2:78130375-78130394 | None:intergenic | 25.0% |
| ! | AAAGACATAGAATATGAGAA+AGG | + | chr7_2:78130376-78130395 | None:intergenic | 25.0% |
| !!! | TTTTATTCACATTCAGGTTA+AGG | - | chr7_2:78130526-78130545 | Msa1079110:CDS | 25.0% |
| !!! | TGCTTTATTAGACACTTTTA+AGG | - | chr7_2:78130599-78130618 | Msa1079110:intron | 25.0% |
| ! | GGTTACAAATAACATCAATA+TGG | + | chr7_2:78130857-78130876 | None:intergenic | 25.0% |
| !! | TTTACATGTCAATTTTCCTT+TGG | - | chr7_2:78131366-78131385 | Msa1079110:intron | 25.0% |
| !!! | TGTTTTTTTTTTGTTGCTCT+TGG | - | chr7_2:78131436-78131455 | Msa1079110:intron | 25.0% |
| !!! | GTTTTTTTTTTGTTGCTCTT+GGG | - | chr7_2:78131437-78131456 | Msa1079110:intron | 25.0% |
| !!! | TTTTTTTTTTGTTGCTCTTG+GGG | - | chr7_2:78131438-78131457 | Msa1079110:intron | 25.0% |
| ! | CTCAAAAAAGAAGATGAAAA+AGG | - | chr7_2:78131611-78131630 | Msa1079110:intron | 25.0% |
| !!! | TTCTAATGTTTTGTTGAATG+TGG | - | chr7_2:78131682-78131701 | Msa1079110:intron | 25.0% |
| !!! | CCAGAATTTTAAAAAGTACA+AGG | + | chr7_2:78131712-78131731 | None:intergenic | 25.0% |
| !!! | CCTTGTACTTTTTAAAATTC+TGG | - | chr7_2:78131709-78131728 | Msa1079110:intron | 25.0% |
| !!! | TTTTTAAAATTCTGGTTCTG+CGG | - | chr7_2:78131717-78131736 | Msa1079110:intron | 25.0% |
| ! | TAGTACTTTAGCAACATATT+TGG | - | chr7_2:78131805-78131824 | Msa1079110:CDS | 25.0% |
| ! | AGTACTTTAGCAACATATTT+GGG | - | chr7_2:78131806-78131825 | Msa1079110:exon | 25.0% |
| ! | TGTGACAGAGAAAAAATAAA+CGG | + | chr7_2:78130190-78130209 | None:intergenic | 25.0% |
| !!! | GGAATTGATTTGAAGAAAAT+CGG | + | chr7_2:78130292-78130311 | None:intergenic | 25.0% |
| ! | AAGACATAGAATATGAGAAA+GGG | + | chr7_2:78130375-78130394 | None:intergenic | 25.0% |
| ! | AAAGACATAGAATATGAGAA+AGG | + | chr7_2:78130376-78130395 | None:intergenic | 25.0% |
| !!! | TTTTATTCACATTCAGGTTA+AGG | - | chr7_2:78130526-78130545 | Msa1079110:CDS | 25.0% |
| !!! | TGCTTTATTAGACACTTTTA+AGG | - | chr7_2:78130599-78130618 | Msa1079110:intron | 25.0% |
| ! | GGTTACAAATAACATCAATA+TGG | + | chr7_2:78130857-78130876 | None:intergenic | 25.0% |
| !! | TTTACATGTCAATTTTCCTT+TGG | - | chr7_2:78131366-78131385 | Msa1079110:intron | 25.0% |
| !!! | TGTTTTTTTTTTGTTGCTCT+TGG | - | chr7_2:78131436-78131455 | Msa1079110:intron | 25.0% |
| !!! | GTTTTTTTTTTGTTGCTCTT+GGG | - | chr7_2:78131437-78131456 | Msa1079110:intron | 25.0% |
| !!! | TTTTTTTTTTGTTGCTCTTG+GGG | - | chr7_2:78131438-78131457 | Msa1079110:intron | 25.0% |
| ! | CTCAAAAAAGAAGATGAAAA+AGG | - | chr7_2:78131611-78131630 | Msa1079110:intron | 25.0% |
| !!! | TTCTAATGTTTTGTTGAATG+TGG | - | chr7_2:78131682-78131701 | Msa1079110:intron | 25.0% |
| !!! | CCAGAATTTTAAAAAGTACA+AGG | + | chr7_2:78131712-78131731 | None:intergenic | 25.0% |
| !!! | CCTTGTACTTTTTAAAATTC+TGG | - | chr7_2:78131709-78131728 | Msa1079110:intron | 25.0% |
| !!! | TTTTTAAAATTCTGGTTCTG+CGG | - | chr7_2:78131717-78131736 | Msa1079110:intron | 25.0% |
| ! | TAGTACTTTAGCAACATATT+TGG | - | chr7_2:78131805-78131824 | Msa1079110:CDS | 25.0% |
| ! | AGTACTTTAGCAACATATTT+GGG | - | chr7_2:78131806-78131825 | Msa1079110:exon | 25.0% |
| AGACATAGAATATGAGAAAG+GGG | + | chr7_2:78130374-78130393 | None:intergenic | 30.0% | |
| ATAACTGAAAAACTCAGTGA+TGG | + | chr7_2:78130461-78130480 | None:intergenic | 30.0% | |
| TATGAATAGATCCACAAGTA+AGG | + | chr7_2:78130489-78130508 | None:intergenic | 30.0% | |
| !! | TGCATTTTGATGATAAAACC+TGG | + | chr7_2:78130830-78130849 | None:intergenic | 30.0% |
| ATTCTCAAATAAGTCTGTGT+TGG | - | chr7_2:78130886-78130905 | Msa1079110:intron | 30.0% | |
| ATTGTATTGTACACGTGTTA+AGG | - | chr7_2:78130924-78130943 | Msa1079110:intron | 30.0% | |
| AGTGAAAGAATCCTGATTTA+TGG | - | chr7_2:78130989-78131008 | Msa1079110:intron | 30.0% | |
| ! | TTTTGTGGAGACATACAAAA+GGG | + | chr7_2:78131023-78131042 | None:intergenic | 30.0% |
| ! | TTTTTGTGGAGACATACAAA+AGG | + | chr7_2:78131024-78131043 | None:intergenic | 30.0% |
| ATTGCAGAGCAAATAAAGAA+TGG | + | chr7_2:78131296-78131315 | None:intergenic | 30.0% | |
| !!! | TTCATCTTCTTTTTTGAGAC+TGG | + | chr7_2:78131609-78131628 | None:intergenic | 30.0% |
| AAAAGAAGATGAAAAAGGAG+AGG | - | chr7_2:78131616-78131635 | Msa1079110:intron | 30.0% | |
| ACTTTCTGTCAATAAAACAC+AGG | + | chr7_2:78131771-78131790 | None:intergenic | 30.0% | |
| AGTTGAAAATCGTAAGAAAG+AGG | + | chr7_2:78131871-78131890 | None:intergenic | 30.0% | |
| AGACATAGAATATGAGAAAG+GGG | + | chr7_2:78130374-78130393 | None:intergenic | 30.0% | |
| ATAACTGAAAAACTCAGTGA+TGG | + | chr7_2:78130461-78130480 | None:intergenic | 30.0% | |
| TATGAATAGATCCACAAGTA+AGG | + | chr7_2:78130489-78130508 | None:intergenic | 30.0% | |
| !! | TGCATTTTGATGATAAAACC+TGG | + | chr7_2:78130830-78130849 | None:intergenic | 30.0% |
| ATTCTCAAATAAGTCTGTGT+TGG | - | chr7_2:78130886-78130905 | Msa1079110:intron | 30.0% | |
| ATTGTATTGTACACGTGTTA+AGG | - | chr7_2:78130924-78130943 | Msa1079110:intron | 30.0% | |
| AGTGAAAGAATCCTGATTTA+TGG | - | chr7_2:78130989-78131008 | Msa1079110:intron | 30.0% | |
| ! | TTTTGTGGAGACATACAAAA+GGG | + | chr7_2:78131023-78131042 | None:intergenic | 30.0% |
| ! | TTTTTGTGGAGACATACAAA+AGG | + | chr7_2:78131024-78131043 | None:intergenic | 30.0% |
| ATTGCAGAGCAAATAAAGAA+TGG | + | chr7_2:78131296-78131315 | None:intergenic | 30.0% | |
| !!! | TTCATCTTCTTTTTTGAGAC+TGG | + | chr7_2:78131609-78131628 | None:intergenic | 30.0% |
| AAAAGAAGATGAAAAAGGAG+AGG | - | chr7_2:78131616-78131635 | Msa1079110:intron | 30.0% | |
| ACTTTCTGTCAATAAAACAC+AGG | + | chr7_2:78131771-78131790 | None:intergenic | 30.0% | |
| AGTTGAAAATCGTAAGAAAG+AGG | + | chr7_2:78131871-78131890 | None:intergenic | 30.0% | |
| AGAAAATCGGATCTAAGAAG+AGG | + | chr7_2:78130279-78130298 | None:intergenic | 35.0% | |
| AGTTATATACGCCTTACTTG+TGG | - | chr7_2:78130475-78130494 | Msa1079110:CDS | 35.0% | |
| TAAGTTTACCAATGCCATCA+AGG | - | chr7_2:78130800-78130819 | Msa1079110:intron | 35.0% | |
| TAAAACCTGGAAAACCTTGA+TGG | + | chr7_2:78130817-78130836 | None:intergenic | 35.0% | |
| ! | AAGTAGAATCTCTGATTTGC+AGG | + | chr7_2:78131090-78131109 | None:intergenic | 35.0% |
| ! | TTTGAAACAAAGGAGAGAAG+TGG | + | chr7_2:78131131-78131150 | None:intergenic | 35.0% |
| !! | CCAGAGATTCTTTGAAACAA+AGG | + | chr7_2:78131141-78131160 | None:intergenic | 35.0% |
| ! | CCTTTGTTTCAAAGAATCTC+TGG | - | chr7_2:78131138-78131157 | Msa1079110:intron | 35.0% |
| TATACATGGATGATTGTGAG+TGG | - | chr7_2:78131331-78131350 | Msa1079110:intron | 35.0% | |
| ! | TTTAGAATGCTGGATCTCAA+GGG | - | chr7_2:78131466-78131485 | Msa1079110:intron | 35.0% |
| TTGATTGTTCTCCTGGTTAT+TGG | - | chr7_2:78131501-78131520 | Msa1079110:intron | 35.0% | |
| ! | TTGCTGTTGACATTTCTCAT+TGG | - | chr7_2:78131528-78131547 | Msa1079110:intron | 35.0% |
| TCTGTCAATAAAACACAGGA+TGG | + | chr7_2:78131767-78131786 | None:intergenic | 35.0% | |
| ! | TTTAGCAACATATTTGGGAC+AGG | - | chr7_2:78131811-78131830 | Msa1079110:exon | 35.0% |
| ! | CATATTTGGGACAGGTTATT+TGG | - | chr7_2:78131819-78131838 | Msa1079110:exon | 35.0% |
| AGAAAATCGGATCTAAGAAG+AGG | + | chr7_2:78130279-78130298 | None:intergenic | 35.0% | |
| AGTTATATACGCCTTACTTG+TGG | - | chr7_2:78130475-78130494 | Msa1079110:CDS | 35.0% | |
| TAAGTTTACCAATGCCATCA+AGG | - | chr7_2:78130800-78130819 | Msa1079110:intron | 35.0% | |
| TAAAACCTGGAAAACCTTGA+TGG | + | chr7_2:78130817-78130836 | None:intergenic | 35.0% | |
| ! | AAGTAGAATCTCTGATTTGC+AGG | + | chr7_2:78131090-78131109 | None:intergenic | 35.0% |
| ! | TTTGAAACAAAGGAGAGAAG+TGG | + | chr7_2:78131131-78131150 | None:intergenic | 35.0% |
| !! | CCAGAGATTCTTTGAAACAA+AGG | + | chr7_2:78131141-78131160 | None:intergenic | 35.0% |
| ! | CCTTTGTTTCAAAGAATCTC+TGG | - | chr7_2:78131138-78131157 | Msa1079110:intron | 35.0% |
| TATACATGGATGATTGTGAG+TGG | - | chr7_2:78131331-78131350 | Msa1079110:intron | 35.0% | |
| ! | TTTAGAATGCTGGATCTCAA+GGG | - | chr7_2:78131466-78131485 | Msa1079110:intron | 35.0% |
| TTGATTGTTCTCCTGGTTAT+TGG | - | chr7_2:78131501-78131520 | Msa1079110:intron | 35.0% | |
| ! | TTGCTGTTGACATTTCTCAT+TGG | - | chr7_2:78131528-78131547 | Msa1079110:intron | 35.0% |
| TCTGTCAATAAAACACAGGA+TGG | + | chr7_2:78131767-78131786 | None:intergenic | 35.0% | |
| ! | TTTAGCAACATATTTGGGAC+AGG | - | chr7_2:78131811-78131830 | Msa1079110:exon | 35.0% |
| ! | CATATTTGGGACAGGTTATT+TGG | - | chr7_2:78131819-78131838 | Msa1079110:exon | 35.0% |
| AGAAGAGGAGAGAAGAATAC+CGG | + | chr7_2:78130264-78130283 | None:intergenic | 40.0% | |
| TGAATACACAGAAGATGCTC+TGG | - | chr7_2:78130957-78130976 | Msa1079110:intron | 40.0% | |
| ! | TGGGGAAATGTTTAGAATGC+TGG | - | chr7_2:78131456-78131475 | Msa1079110:intron | 40.0% |
| ! | GTTTAGAATGCTGGATCTCA+AGG | - | chr7_2:78131465-78131484 | Msa1079110:intron | 40.0% |
| ATTGTTCTCCTGGTTATTGG+TGG | - | chr7_2:78131504-78131523 | Msa1079110:intron | 40.0% | |
| TTGTTCTCCTGGTTATTGGT+GGG | - | chr7_2:78131505-78131524 | Msa1079110:intron | 40.0% | |
| !!! | CTTCTTTTTTCTAGGAGGGA+GGG | + | chr7_2:78131586-78131605 | None:intergenic | 40.0% |
| !!! | CTGGCTTCTTTTTTCTAGGA+GGG | + | chr7_2:78131590-78131609 | None:intergenic | 40.0% |
| !!! | ACTGGCTTCTTTTTTCTAGG+AGG | + | chr7_2:78131591-78131610 | None:intergenic | 40.0% |
| !!! | GAGACTGGCTTCTTTTTTCT+AGG | + | chr7_2:78131594-78131613 | None:intergenic | 40.0% |
| ! | ATTTGGGACAGGTTATTTGG+TGG | - | chr7_2:78131822-78131841 | Msa1079110:exon | 40.0% |
| AGAAGAGGAGAGAAGAATAC+CGG | + | chr7_2:78130264-78130283 | None:intergenic | 40.0% | |
| TGAATACACAGAAGATGCTC+TGG | - | chr7_2:78130957-78130976 | Msa1079110:intron | 40.0% | |
| ! | TGGGGAAATGTTTAGAATGC+TGG | - | chr7_2:78131456-78131475 | Msa1079110:intron | 40.0% |
| ! | GTTTAGAATGCTGGATCTCA+AGG | - | chr7_2:78131465-78131484 | Msa1079110:intron | 40.0% |
| ATTGTTCTCCTGGTTATTGG+TGG | - | chr7_2:78131504-78131523 | Msa1079110:intron | 40.0% | |
| TTGTTCTCCTGGTTATTGGT+GGG | - | chr7_2:78131505-78131524 | Msa1079110:intron | 40.0% | |
| !!! | CTTCTTTTTTCTAGGAGGGA+GGG | + | chr7_2:78131586-78131605 | None:intergenic | 40.0% |
| !!! | CTGGCTTCTTTTTTCTAGGA+GGG | + | chr7_2:78131590-78131609 | None:intergenic | 40.0% |
| !!! | ACTGGCTTCTTTTTTCTAGG+AGG | + | chr7_2:78131591-78131610 | None:intergenic | 40.0% |
| !!! | GAGACTGGCTTCTTTTTTCT+AGG | + | chr7_2:78131594-78131613 | None:intergenic | 40.0% |
| ! | ATTTGGGACAGGTTATTTGG+TGG | - | chr7_2:78131822-78131841 | Msa1079110:exon | 40.0% |
| AAGAGGAGAGAAGAATACCG+GGG | + | chr7_2:78130262-78130281 | None:intergenic | 45.0% | |
| GAAGAGGAGAGAAGAATACC+GGG | + | chr7_2:78130263-78130282 | None:intergenic | 45.0% | |
| ! | TATGAGAAAGGGGCATGCAA+GGG | + | chr7_2:78130364-78130383 | None:intergenic | 45.0% |
| ! | ATATGAGAAAGGGGCATGCA+AGG | + | chr7_2:78130365-78130384 | None:intergenic | 45.0% |
| !! | GTGATGGATCTTCATCTGGA+AGG | + | chr7_2:78130445-78130464 | None:intergenic | 45.0% |
| !! | CTCAGTGATGGATCTTCATC+TGG | + | chr7_2:78130449-78130468 | None:intergenic | 45.0% |
| ! | CTGGAAAACCTTGATGGCAT+TGG | + | chr7_2:78130811-78130830 | None:intergenic | 45.0% |
| ! | CAATGCCATCAAGGTTTTCC+AGG | - | chr7_2:78130809-78130828 | Msa1079110:intron | 45.0% |
| GGGACTGTGAACCATAAATC+AGG | + | chr7_2:78131003-78131022 | None:intergenic | 45.0% | |
| ACATGGATGATTGTGAGTGG+TGG | - | chr7_2:78131334-78131353 | Msa1079110:intron | 45.0% | |
| GCTCTACGTTTATGCACAGA+AGG | - | chr7_2:78131560-78131579 | Msa1079110:intron | 45.0% | |
| !!! | GCTTCTTTTTTCTAGGAGGG+AGG | + | chr7_2:78131587-78131606 | None:intergenic | 45.0% |
| AAAAAGGAGAGGCTGAAGCA+AGG | - | chr7_2:78131627-78131646 | Msa1079110:intron | 45.0% | |
| GACTTGAATCCGAGAGATCA+AGG | + | chr7_2:78130166-78130185 | None:intergenic | 45.0% | |
| AAGAGGAGAGAAGAATACCG+GGG | + | chr7_2:78130262-78130281 | None:intergenic | 45.0% | |
| GAAGAGGAGAGAAGAATACC+GGG | + | chr7_2:78130263-78130282 | None:intergenic | 45.0% | |
| ! | TATGAGAAAGGGGCATGCAA+GGG | + | chr7_2:78130364-78130383 | None:intergenic | 45.0% |
| ! | ATATGAGAAAGGGGCATGCA+AGG | + | chr7_2:78130365-78130384 | None:intergenic | 45.0% |
| !! | GTGATGGATCTTCATCTGGA+AGG | + | chr7_2:78130445-78130464 | None:intergenic | 45.0% |
| !! | CTCAGTGATGGATCTTCATC+TGG | + | chr7_2:78130449-78130468 | None:intergenic | 45.0% |
| ! | CTGGAAAACCTTGATGGCAT+TGG | + | chr7_2:78130811-78130830 | None:intergenic | 45.0% |
| ! | CAATGCCATCAAGGTTTTCC+AGG | - | chr7_2:78130809-78130828 | Msa1079110:intron | 45.0% |
| GGGACTGTGAACCATAAATC+AGG | + | chr7_2:78131003-78131022 | None:intergenic | 45.0% | |
| ACATGGATGATTGTGAGTGG+TGG | - | chr7_2:78131334-78131353 | Msa1079110:intron | 45.0% | |
| GCTCTACGTTTATGCACAGA+AGG | - | chr7_2:78131560-78131579 | Msa1079110:intron | 45.0% | |
| !!! | GCTTCTTTTTTCTAGGAGGG+AGG | + | chr7_2:78131587-78131606 | None:intergenic | 45.0% |
| AAAAAGGAGAGGCTGAAGCA+AGG | - | chr7_2:78131627-78131646 | Msa1079110:intron | 45.0% | |
| TTTATCGGCCATGGTTGACG+CGG | + | chr7_2:78130235-78130254 | None:intergenic | 50.0% | |
| GAATACCGGGGGGACTTTAT+CGG | + | chr7_2:78130250-78130269 | None:intergenic | 50.0% | |
| AGAGGAGAGAAGAATACCGG+GGG | + | chr7_2:78130261-78130280 | None:intergenic | 50.0% | |
| CCAGGAGAACAATCAAGCCT+GGG | + | chr7_2:78131497-78131516 | None:intergenic | 50.0% | |
| ACCAGGAGAACAATCAAGCC+TGG | + | chr7_2:78131498-78131517 | None:intergenic | 50.0% | |
| ACAGCAACCCACCAATAACC+AGG | + | chr7_2:78131515-78131534 | None:intergenic | 50.0% | |
| ATACAGTGCCTCTACTCTCC+AGG | + | chr7_2:78131663-78131682 | None:intergenic | 50.0% | |
| TTTATCGGCCATGGTTGACG+CGG | + | chr7_2:78130235-78130254 | None:intergenic | 50.0% | |
| GAATACCGGGGGGACTTTAT+CGG | + | chr7_2:78130250-78130269 | None:intergenic | 50.0% | |
| AGAGGAGAGAAGAATACCGG+GGG | + | chr7_2:78130261-78130280 | None:intergenic | 50.0% | |
| CCAGGAGAACAATCAAGCCT+GGG | + | chr7_2:78131497-78131516 | None:intergenic | 50.0% | |
| ACCAGGAGAACAATCAAGCC+TGG | + | chr7_2:78131498-78131517 | None:intergenic | 50.0% | |
| ACAGCAACCCACCAATAACC+AGG | + | chr7_2:78131515-78131534 | None:intergenic | 50.0% | |
| ATACAGTGCCTCTACTCTCC+AGG | + | chr7_2:78131663-78131682 | None:intergenic | 50.0% | |
| CGCGGAGAAGCTTCAAGCTA+TGG | + | chr7_2:78130217-78130236 | None:intergenic | 55.0% | |
| AAGCTTCTCCGCGTCAACCA+TGG | - | chr7_2:78130224-78130243 | Msa1079110:three_prime_UTR | 55.0% | |
| GAGGAGAGAAGAATACCGGG+GGG | + | chr7_2:78130260-78130279 | None:intergenic | 55.0% | |
| GGATCTCAAGGGTTCAACCC+AGG | - | chr7_2:78131477-78131496 | Msa1079110:intron | 55.0% | |
| CCCAGGCTTGATTGTTCTCC+TGG | - | chr7_2:78131494-78131513 | Msa1079110:intron | 55.0% | |
| AAGCAAGGAGTCTCTGCACC+TGG | - | chr7_2:78131642-78131661 | Msa1079110:intron | 55.0% | |
| TCTCTGCACCTGGAGAGTAG+AGG | - | chr7_2:78131652-78131671 | Msa1079110:intron | 55.0% | |
| CGCGGAGAAGCTTCAAGCTA+TGG | + | chr7_2:78130217-78130236 | None:intergenic | 55.0% | |
| AAGCTTCTCCGCGTCAACCA+TGG | - | chr7_2:78130224-78130243 | Msa1079110:three_prime_UTR | 55.0% | |
| GAGGAGAGAAGAATACCGGG+GGG | + | chr7_2:78130260-78130279 | None:intergenic | 55.0% | |
| GGATCTCAAGGGTTCAACCC+AGG | - | chr7_2:78131477-78131496 | Msa1079110:intron | 55.0% | |
| CCCAGGCTTGATTGTTCTCC+TGG | - | chr7_2:78131494-78131513 | Msa1079110:intron | 55.0% | |
| AAGCAAGGAGTCTCTGCACC+TGG | - | chr7_2:78131642-78131661 | Msa1079110:intron | 55.0% | |
| TCTCTGCACCTGGAGAGTAG+AGG | - | chr7_2:78131652-78131671 | Msa1079110:intron | 55.0% | |
| CATGGCCGATAAAGTCCCCC+CGG | - | chr7_2:78130242-78130261 | Msa1079110:three_prime_UTR | 60.0% | |
| CATGGCCGATAAAGTCCCCC+CGG | - | chr7_2:78130242-78130261 | Msa1079110:three_prime_UTR | 60.0% | |
| CGGGGGGACTTTATCGGCCA+TGG | + | chr7_2:78130244-78130263 | None:intergenic | 65.0% | |
| CGGGGGGACTTTATCGGCCA+TGG | + | chr7_2:78130244-78130263 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 78130165 | 78131902 | 78130165 | ID=Msa1079110;Name=Msa1079110 |
| chr7_2 | mRNA | 78130165 | 78131902 | 78130165 | ID=Msa1079110-mRNA-1;Parent=Msa1079110;Name=Msa1079110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78|1|1|1|1|1|2|231|73 |
| chr7_2 | exon | 78130165 | 78130596 | 78130165 | ID=Msa1079110-mRNA-1:exon:19423;Parent=Msa1079110-mRNA-1 |
| chr7_2 | exon | 78131804 | 78131902 | 78131804 | ID=Msa1079110-mRNA-1:exon:19422;Parent=Msa1079110-mRNA-1 |
| chr7_2 | five_prime_UTR | 78131825 | 78131902 | 78131825 | ID=Msa1079110-mRNA-1:five_prime_utr;Parent=Msa1079110-mRNA-1 |
| chr7_2 | CDS | 78131804 | 78131824 | 78131804 | ID=Msa1079110-mRNA-1:cds;Parent=Msa1079110-mRNA-1 |
| chr7_2 | CDS | 78130396 | 78130596 | 78130396 | ID=Msa1079110-mRNA-1:cds;Parent=Msa1079110-mRNA-1 |
| chr7_2 | three_prime_UTR | 78130165 | 78130395 | 78130165 | ID=Msa1079110-mRNA-1:three_prime_utr;Parent=Msa1079110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
