AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079270 MtrunA17_Chr7g0263941 94.840 407 19 2 1 406 1 406 0.0 785
Msa1079270 MtrunA17_Chr1g0181381 57.230 491 102 13 3 387 4 492 9.44e-164 469
Msa1079270 MtrunA17_Chr2g0330171 63.251 283 84 4 33 302 45 320 3.21e-119 354
Msa1079270 MtrunA17_Chr4g0029521 73.756 221 45 6 7 218 6 222 1.99e-115 345
Msa1079270 MtrunA17_Chr8g0342421 56.798 331 104 8 27 329 55 374 1.15e-112 339
Msa1079270 MtrunA17_Chr1g0191991 56.051 314 112 4 34 328 63 369 1.21e-112 340
Msa1079270 MtrunA17_Chr1g0199101 87.500 168 20 1 34 200 47 214 1.87e-112 339
Msa1079270 MtrunA17_Chr4g0040571 83.051 177 29 1 28 204 34 209 1.17e-111 336
Msa1079270 MtrunA17_Chr1g0163001 82.967 182 27 2 23 204 34 211 1.52e-111 337
Msa1079270 MtrunA17_Chr1g0185121 53.936 343 112 7 30 340 36 364 2.56e-110 331
Msa1079270 MtrunA17_Chr1g0162971 82.941 170 29 0 34 203 41 210 4.18e-110 330
Msa1079270 MtrunA17_Chr8g0373541 73.333 210 50 2 11 220 15 218 1.04e-109 332
Msa1079270 MtrunA17_Chr1g0210821 86.875 160 21 0 37 196 47 206 2.03e-108 330
Msa1079270 MtrunA17_Chr1g0151351 61.484 283 86 10 30 308 38 301 1.94e-107 324
Msa1079270 MtrunA17_Chr7g0268961 52.394 355 124 9 44 365 32 374 2.13e-106 322
Msa1079270 MtrunA17_Chr2g0326381 65.823 237 61 7 34 265 32 253 4.48e-105 317
Msa1079270 MtrunA17_Chr3g0141431 46.212 396 156 12 21 373 6 387 1.30e-99 302
Msa1079270 MtrunA17_Chr2g0324991 87.023 131 17 0 45 175 3 133 2.04e-85 256
Msa1079270 MtrunA17_Chr6g0479921 64.557 158 55 1 32 188 27 184 1.58e-74 239
Msa1079270 MtrunA17_Chr8g0375521 64.103 156 54 2 34 187 27 182 1.88e-72 233
Msa1079270 MtrunA17_Chr3g0123941 37.821 156 89 3 39 186 113 268 3.83e-26 107
Msa1079270 MtrunA17_Chr1g0200421 35.762 151 85 4 48 186 236 386 9.80e-25 105
Msa1079270 MtrunA17_Chr2g0320341 34.839 155 87 4 43 183 224 378 1.45e-23 101
Msa1079270 MtrunA17_Chr8g0382121 35.948 153 87 5 42 183 104 256 3.67e-22 96.3
Msa1079270 MtrunA17_Chr5g0422571 34.254 181 102 6 21 191 78 251 6.87e-22 95.1
Msa1079270 MtrunA17_Chr1g0198651 34.503 171 95 5 28 186 84 249 5.11e-21 92.4
Msa1079270 MtrunA17_Chr4g0053341 35.762 151 87 5 45 186 69 218 1.90e-20 89.7
Msa1079270 MtrunA17_Chr4g0026521 36.301 146 83 5 50 186 118 262 1.97e-19 88.2
Msa1079270 MtrunA17_Chr2g0321291 34.054 185 103 8 50 223 133 309 2.47e-19 87.8
Msa1079270 MtrunA17_Chr8g0352011 36.301 146 83 5 50 186 166 310 2.82e-19 88.2
Msa1079270 MtrunA17_Chr7g0258011 34.932 146 85 5 50 186 176 320 5.53e-19 87.4
Msa1079270 MtrunA17_Chr1g0173841 34.932 146 85 5 50 186 215 359 1.53e-18 86.7
Msa1079270 MtrunA17_Chr2g0328921 34.932 146 85 5 50 186 138 282 2.25e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079270 AT5G03150.1 60.841 309 73 9 3 283 4 292 7.05e-116 347
Msa1079270 AT3G50700.1 85.549 173 25 0 24 196 24 196 1.07e-113 340
Msa1079270 AT5G66730.1 75.728 206 43 2 11 209 8 213 8.71e-112 337
Msa1079270 AT5G44160.1 53.239 355 107 9 28 329 32 380 1.42e-111 335
Msa1079270 AT1G55110.3 62.759 290 89 7 30 306 58 341 2.89e-111 334
Msa1079270 AT1G55110.1 62.759 290 89 7 30 306 58 341 2.89e-111 334
Msa1079270 AT1G55110.2 62.759 290 89 7 30 306 58 341 2.89e-111 334
Msa1079270 AT3G45260.2 84.181 177 23 2 33 204 38 214 8.73e-109 327
Msa1079270 AT3G45260.1 84.181 177 23 2 33 204 38 214 8.73e-109 327
Msa1079270 AT1G03840.1 78.610 187 38 2 28 213 36 221 9.65e-109 329
Msa1079270 AT3G13810.6 86.826 167 21 1 31 196 48 214 1.97e-106 323
Msa1079270 AT1G14580.1 82.738 168 26 1 29 196 51 215 2.25e-106 322
Msa1079270 AT1G14580.2 82.738 168 26 1 29 196 51 215 2.25e-106 322
Msa1079270 AT3G13810.4 86.826 167 21 1 31 196 67 233 2.80e-106 323
Msa1079270 AT3G13810.1 86.826 167 21 1 31 196 67 233 2.80e-106 323
Msa1079270 AT3G13810.5 86.826 167 21 1 31 196 62 228 2.87e-106 323
Msa1079270 AT2G02070.2 83.529 170 26 1 34 203 52 219 3.93e-106 325
Msa1079270 AT2G02070.1 83.529 170 26 1 34 203 52 219 3.93e-106 325
Msa1079270 AT1G14580.3 82.738 168 26 1 29 196 65 229 4.12e-106 322
Msa1079270 AT1G03840.2 77.540 187 38 3 28 213 36 219 4.82e-105 320
Msa1079270 AT4G02670.1 81.714 175 31 1 34 207 53 227 5.57e-105 316
Msa1079270 AT2G02080.1 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1079270 AT2G02080.4 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1079270 AT2G02080.5 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1079270 AT2G02080.3 70.647 201 46 3 7 197 20 217 6.13e-105 320
Msa1079270 AT4G02670.2 81.714 175 31 1 34 207 55 229 6.61e-105 316
Msa1079270 AT5G60470.2 75.521 192 38 3 21 203 24 215 2.54e-104 316
Msa1079270 AT5G60470.3 75.521 192 38 3 21 203 20 211 3.32e-104 316
Msa1079270 AT5G44160.2 52.212 339 104 8 44 329 8 341 1.90e-103 313
Msa1079270 AT3G13810.3 88.235 153 17 1 45 196 68 220 4.04e-98 302
Msa1079270 AT3G13810.2 88.235 153 17 1 45 196 82 234 6.69e-98 301
Msa1079270 AT5G60470.1 80.745 161 29 2 45 203 46 206 7.18e-95 292
Msa1079270 AT2G02080.6 81.295 139 26 0 58 196 1 139 1.74e-88 275
Msa1079270 AT2G02080.2 81.295 139 26 0 58 196 1 139 1.74e-88 275
Msa1079270 AT1G68130.1 56.842 190 74 3 32 219 39 222 7.46e-75 239
Msa1079270 AT1G25250.3 64.780 159 53 2 32 187 31 189 3.51e-74 236
Msa1079270 AT2G01940.1 63.190 163 58 2 32 192 42 204 9.86e-74 237
Msa1079270 AT2G01940.3 62.195 164 59 3 32 192 42 205 3.74e-70 228
Msa1079270 AT1G25250.1 65.306 147 48 2 44 187 20 166 3.45e-69 223
Msa1079270 AT1G68130.2 52.817 142 59 3 80 219 1 136 9.98e-46 160
Msa1079270 AT1G25250.2 62.162 111 39 2 80 187 1 111 2.52e-44 156
Msa1079270 AT2G01940.2 60.870 115 43 2 80 192 1 115 2.75e-44 157
Msa1079270 AT1G34370.3 29.918 244 124 8 43 244 14 252 9.29e-25 103
Msa1079270 AT1G34370.2 29.918 244 124 8 43 244 224 462 3.12e-24 104
Msa1079270 AT1G34370.1 29.918 244 124 8 43 244 224 462 3.12e-24 104
Msa1079270 AT5G22890.1 32.530 166 96 4 35 186 191 354 1.32e-22 99.0
Msa1079270 AT1G13290.1 34.211 152 88 5 55 195 93 243 1.80e-19 88.6
Msa1079270 AT1G08290.1 35.849 159 85 7 44 186 155 312 1.20e-18 86.7
Msa1079270 AT1G34790.1 33.333 180 104 7 47 218 129 300 1.25e-18 86.3
Msa1079270 AT3G20880.1 34.247 146 86 5 50 186 243 387 2.78e-18 86.7
Msa1079270 AT1G51220.1 33.562 146 87 5 50 186 165 309 4.08e-18 85.1
Msa1079270 AT3G57670.1 34.247 146 86 5 50 186 204 348 6.15e-18 85.1

Find 95 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGGCCATATAGTTTA+TGG 0.179946 7_2:+78312307 None:intergenic
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7_2:+78312015 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7_2:-78311651 Msa1079270:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7_2:+78311556 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7_2:-78312102 Msa1079270:exon
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7_2:+78311619 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7_2:+78311999 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7_2:-78310395 Msa1079270:CDS
ACTCATCATCGATGAACTTA+TGG 0.281450 7_2:+78310112 None:intergenic
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7_2:+78312016 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7_2:+78310285 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7_2:+78311830 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7_2:+78311774 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7_2:+78312021 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7_2:-78311705 Msa1079270:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7_2:+78312006 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7_2:+78310657 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7_2:+78311976 None:intergenic
AAACCATGATGAGGTTAATA+TGG 0.368833 7_2:-78310282 Msa1079270:CDS
GCACAACCCCATAAACTATA+TGG 0.369807 7_2:-78312315 Msa1079270:five_prime_UTR
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7_2:-78311650 Msa1079270:CDS
AGGTGAAAACAAAGGCTTAT+TGG 0.372642 7_2:+78312170 None:intergenic
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7_2:+78310674 None:intergenic
TTCAACCACAATGACAAGTT+TGG 0.398343 7_2:+78310533 None:intergenic
AAAGTGGCCATATAGTTTAT+GGG 0.400863 7_2:+78312308 None:intergenic
GCTCTTGAGGTAGAAATTGA+TGG 0.404206 7_2:+78310150 None:intergenic
GAAAACACGGTGAGAAGAAA+TGG 0.409934 7_2:-78311595 Msa1079270:CDS
GTGTCCACCATGATGCGGCC+AGG 0.413040 7_2:-78311658 Msa1079270:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7_2:-78311837 Msa1079270:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7_2:+78311807 None:intergenic
ATCAATATAGTCAACACTTA+AGG 0.424276 7_2:+78310045 None:intergenic
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7_2:+78312022 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7_2:-78311550 Msa1079270:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7_2:+78311671 None:intergenic
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7_2:+78311728 None:intergenic
AGTTTAAATCAATTCAATGC+TGG 0.449709 7_2:-78310092 Msa1079270:CDS
ATGTTTGAGATGAATGAAAA+AGG 0.453554 7_2:-78309966 Msa1079270:three_prime_UTR
TAGTAGTAGTAGTGCAGCTA+TGG 0.457270 7_2:-78310216 Msa1079270:CDS
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7_2:+78311640 None:intergenic
GTGGAAGAGGATAGTGAAAA+GGG 0.470178 7_2:+78312075 None:intergenic
GATAATGTTTGTGATAGTAG+TGG 0.474671 7_2:-78309999 Msa1079270:three_prime_UTR
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7_2:+78312009 None:intergenic
AGAGCAATGACTTCGGCATC+CGG 0.484253 7_2:+78311857 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7_2:-78310199 Msa1079270:CDS
GTTTAAATCAATTCAATGCT+GGG 0.488084 7_2:-78310091 Msa1079270:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7_2:+78311732 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7_2:-78311638 Msa1079270:CDS
GTCAAAACCTCCTGTGGAAG+AGG 0.496517 7_2:+78312062 None:intergenic
TGTGGAAGAGGATAGTGAAA+AGG 0.496596 7_2:+78312074 None:intergenic
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7_2:+78311651 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7_2:-78311657 Msa1079270:CDS
GCAAGCTTTGCTAGCTCTTG+AGG 0.501273 7_2:+78310137 None:intergenic
CTAAATGCTGTAAAAGAGAC+TGG 0.501836 7_2:+78312243 None:intergenic
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7_2:-78310200 Msa1079270:CDS
GCTGTAAAAGAGACTGGCCT+TGG 0.509076 7_2:+78312249 None:intergenic
TAAAAGAGACTGGCCTTGGC+GGG 0.509915 7_2:+78312253 None:intergenic
CATTCATCTCAAACATGCAG+TGG 0.512418 7_2:+78309973 None:intergenic
GTAAAAGAGACTGGCCTTGG+CGG 0.517343 7_2:+78312252 None:intergenic
TGACCATATTAACCTCATCA+TGG 0.523171 7_2:+78310279 None:intergenic
TTAAAACAGCTAAATTTCAA+AGG 0.527522 7_2:+78312132 None:intergenic
TCACTATCCTCTTCCACAGG+AGG 0.530954 7_2:-78312069 Msa1079270:CDS
CAACAATTTAGTCCACATGC+AGG 0.543450 7_2:-78310572 Msa1079270:CDS
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7_2:+78310310 None:intergenic
ATAATGTTTGTGATAGTAGT+GGG 0.561142 7_2:-78309998 Msa1079270:three_prime_UTR
AAGTTTGTCAAAACCTCCTG+TGG 0.563123 7_2:+78312056 None:intergenic
CATGAGCTAATTGTTATAGC+TGG 0.573740 7_2:+78312337 None:intergenic
GGCCGCATCATGGTGGACAC+AGG 0.576015 7_2:+78311661 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7_2:-78311761 Msa1079270:CDS
AAGTGGCCATATAGTTTATG+GGG 0.586784 7_2:+78312309 None:intergenic
TGGAGAAAGAGCAATGACTT+CGG 0.587031 7_2:+78311850 None:intergenic
AGTAGTAGTGCAGCTATGGT+TGG 0.587266 7_2:-78310212 Msa1079270:CDS
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7_2:+78311634 None:intergenic
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7_2:+78311672 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7_2:-78311985 Msa1079270:intron
TGCTCATGAAATCCTGCATG+TGG 0.593771 7_2:+78310560 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7_2:-78311484 Msa1079270:intron
GAAGAGGTCACAACCTACCA+TGG 0.609397 7_2:-78311745 Msa1079270:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7_2:-78310291 Msa1079270:CDS
ATTCATCTCAAACATGCAGT+GGG 0.610037 7_2:+78309974 None:intergenic
GTCTGCGAAATATGCAACAA+AGG 0.612364 7_2:-78311800 Msa1079270:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7_2:+78310416 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7_2:-78311730 Msa1079270:CDS
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7_2:+78311624 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7_2:-78310608 Msa1079270:CDS
GACCTGTGTCCACCATGATG+CGG 0.639865 7_2:-78311663 Msa1079270:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7_2:-78310626 Msa1079270:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7_2:-78311527 Msa1079270:CDS
TAATCACTTATATCCCGCCA+AGG 0.654401 7_2:-78312266 Msa1079270:five_prime_UTR
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7_2:-78311712 Msa1079270:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7_2:-78311994 Msa1079270:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7_2:+78311654 None:intergenic
AAAGACCAAACTTGTCATTG+TGG 0.669911 7_2:-78310538 Msa1079270:CDS
AGAGAATATAAGTGTGACTG+TGG 0.678389 7_2:-78311500 Msa1079270:CDS
AAAGTACCAGGTGAAAACAA+AGG 0.694235 7_2:+78312162 None:intergenic
TGGAAGAGGATAGTGAAAAG+GGG 0.696112 7_2:+78312076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG + chr7_2:78310389-78310408 None:intergenic 0.0%
!! TTTATTTATTAAATATTAAA+AGG + chr7_2:78310389-78310408 None:intergenic 0.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7_2:78310955-78310974 Msa1079270:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7_2:78311397-78311416 Msa1079270:intron 10.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7_2:78310955-78310974 Msa1079270:intron 10.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7_2:78311397-78311416 Msa1079270:intron 10.0%
!!! GAAATCAACAAAAATTATTT+TGG + chr7_2:78310117-78310136 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7_2:78310363-78310382 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7_2:78310430-78310449 Msa1079270:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7_2:78310898-78310917 Msa1079270:intron 15.0%
!!! GAAATCAACAAAAATTATTT+TGG + chr7_2:78310117-78310136 None:intergenic 15.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7_2:78310363-78310382 None:intergenic 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7_2:78310430-78310449 Msa1079270:CDS 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7_2:78310898-78310917 Msa1079270:intron 15.0%
!!! TCAACAAAAATTATTTTGGA+GGG + chr7_2:78310113-78310132 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG + chr7_2:78310114-78310133 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG + chr7_2:78310198-78310217 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7_2:78311225-78311244 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7_2:78311242-78311261 Msa1079270:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7_2:78311333-78311352 None:intergenic 20.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7_2:78311452-78311471 None:intergenic 20.0%
!!! ACTATTTTTTTGCCTATATA+TGG - chr7_2:78311464-78311483 Msa1079270:intron 20.0%
!!! TTTTTCTAATGTTATGCAAA+TGG - chr7_2:78311874-78311893 Msa1079270:intron 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7_2:78312290-78312309 Msa1079270:five_prime_UTR 20.0%
!!! TCAACAAAAATTATTTTGGA+GGG + chr7_2:78310113-78310132 None:intergenic 20.0%
!!! ATCAACAAAAATTATTTTGG+AGG + chr7_2:78310114-78310133 None:intergenic 20.0%
!! TTAAAACAGCTAAATTTCAA+AGG + chr7_2:78310198-78310217 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7_2:78311225-78311244 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7_2:78311242-78311261 Msa1079270:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7_2:78311333-78311352 None:intergenic 20.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7_2:78311452-78311471 None:intergenic 20.0%
!!! ACTATTTTTTTGCCTATATA+TGG - chr7_2:78311464-78311483 Msa1079270:intron 20.0%
!!! TTTTTCTAATGTTATGCAAA+TGG - chr7_2:78311874-78311893 Msa1079270:intron 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7_2:78312290-78312309 Msa1079270:five_prime_UTR 20.0%
! TGTTAAAAGACAAGAAAAAG+TGG + chr7_2:78310038-78310057 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7_2:78310711-78310730 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+CGG - chr7_2:78310719-78310738 Msa1079270:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7_2:78311028-78311047 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7_2:78311037-78311056 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7_2:78311090-78311109 Msa1079270:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7_2:78311324-78311343 None:intergenic 25.0%
!! ATAAAAACTTGTTTCGTTCA+AGG - chr7_2:78311354-78311373 Msa1079270:intron 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7_2:78311470-78311489 Msa1079270:intron 25.0%
! AATACTCCATAACCATATAT+AGG + chr7_2:78311479-78311498 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7_2:78311543-78311562 Msa1079270:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7_2:78311820-78311839 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7_2:78312235-78312254 Msa1079270:five_prime_UTR 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7_2:78312236-78312255 Msa1079270:five_prime_UTR 25.0%
! ATCAATATAGTCAACACTTA+AGG + chr7_2:78312285-78312304 None:intergenic 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7_2:78312329-78312348 Msa1079270:five_prime_UTR 25.0%
!! ATGTTTGAGATGAATGAAAA+AGG - chr7_2:78312361-78312380 Msa1079270:five_prime_UTR 25.0%
! TGTTAAAAGACAAGAAAAAG+TGG + chr7_2:78310038-78310057 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7_2:78310711-78310730 None:intergenic 25.0%
!!! AAACATTTTAGCAGAAAACA+CGG - chr7_2:78310719-78310738 Msa1079270:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7_2:78311028-78311047 None:intergenic 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7_2:78311037-78311056 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7_2:78311090-78311109 Msa1079270:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7_2:78311324-78311343 None:intergenic 25.0%
!! ATAAAAACTTGTTTCGTTCA+AGG - chr7_2:78311354-78311373 Msa1079270:intron 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7_2:78311470-78311489 Msa1079270:intron 25.0%
! AATACTCCATAACCATATAT+AGG + chr7_2:78311479-78311498 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7_2:78311543-78311562 Msa1079270:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7_2:78311820-78311839 None:intergenic 25.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7_2:78312235-78312254 Msa1079270:five_prime_UTR 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7_2:78312236-78312255 Msa1079270:five_prime_UTR 25.0%
! ATCAATATAGTCAACACTTA+AGG + chr7_2:78312285-78312304 None:intergenic 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7_2:78312329-78312348 Msa1079270:five_prime_UTR 25.0%
!! ATGTTTGAGATGAATGAAAA+AGG - chr7_2:78312361-78312380 Msa1079270:five_prime_UTR 25.0%
AAAGTGGCCATATAGTTTAT+GGG + chr7_2:78310022-78310041 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG + chr7_2:78310023-78310042 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG - chr7_2:78310225-78310244 Msa1079270:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7_2:78310774-78310793 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7_2:78310777-78310796 Msa1079270:intron 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7_2:78310926-78310945 Msa1079270:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7_2:78311047-78311066 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7_2:78311508-78311527 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7_2:78311533-78311552 Msa1079270:CDS 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7_2:78311656-78311675 None:intergenic 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7_2:78311971-78311990 Msa1079270:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7_2:78311980-78311999 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7_2:78311980-78311999 Msa1079270:intron 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7_2:78311984-78312003 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7_2:78312036-78312055 Msa1079270:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7_2:78312045-78312064 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG - chr7_2:78312045-78312064 Msa1079270:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7_2:78312328-78312347 Msa1079270:five_prime_UTR 30.0%
AAAGTGGCCATATAGTTTAT+GGG + chr7_2:78310022-78310041 None:intergenic 30.0%
AAAAGTGGCCATATAGTTTA+TGG + chr7_2:78310023-78310042 None:intergenic 30.0%
TGCTCACAAATGAATATTCT+TGG - chr7_2:78310225-78310244 Msa1079270:CDS 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7_2:78310774-78310793 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7_2:78310777-78310796 Msa1079270:intron 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7_2:78310926-78310945 Msa1079270:intron 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7_2:78311047-78311066 None:intergenic 30.0%
TAGAATAAACAAGCACTACT+CGG + chr7_2:78311508-78311527 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7_2:78311533-78311552 Msa1079270:CDS 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7_2:78311656-78311675 None:intergenic 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7_2:78311971-78311990 Msa1079270:intron 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7_2:78311980-78311999 None:intergenic 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7_2:78311980-78311999 Msa1079270:intron 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7_2:78311984-78312003 None:intergenic 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7_2:78312036-78312055 Msa1079270:CDS 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7_2:78312045-78312064 None:intergenic 30.0%
AAACCATGATGAGGTTAATA+TGG - chr7_2:78312045-78312064 Msa1079270:CDS 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7_2:78312328-78312347 Msa1079270:five_prime_UTR 30.0%
CATGAGCTAATTGTTATAGC+TGG + chr7_2:78309993-78310012 None:intergenic 35.0%
AAGTGGCCATATAGTTTATG+GGG + chr7_2:78310021-78310040 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG + chr7_2:78310087-78310106 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG - chr7_2:78310085-78310104 Msa1079270:CDS 35.0%
AGGTGAAAACAAAGGCTTAT+TGG + chr7_2:78310160-78310179 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG - chr7_2:78310159-78310178 Msa1079270:CDS 35.0%
! AAAGTACCAGGTGAAAACAA+AGG + chr7_2:78310168-78310187 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG + chr7_2:78310180-78310199 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7_2:78310331-78310350 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7_2:78310333-78310352 Msa1079270:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7_2:78310354-78310373 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7_2:78310451-78310470 Msa1079270:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7_2:78310490-78310509 Msa1079270:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7_2:78310566-78310585 Msa1079270:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7_2:78310624-78310643 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7_2:78310622-78310641 Msa1079270:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7_2:78310635-78310654 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7_2:78310706-78310725 None:intergenic 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7_2:78310800-78310819 Msa1079270:intron 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7_2:78310827-78310846 Msa1079270:intron 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7_2:78311561-78311580 Msa1079270:CDS 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7_2:78311673-78311692 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7_2:78311701-78311720 Msa1079270:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7_2:78311719-78311738 Msa1079270:CDS 35.0%
AAAGACCAAACTTGTCATTG+TGG - chr7_2:78311789-78311808 Msa1079270:CDS 35.0%
TTCAACCACAATGACAAGTT+TGG + chr7_2:78311797-78311816 None:intergenic 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7_2:78312020-78312039 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG + chr7_2:78312051-78312070 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7_2:78312128-78312147 Msa1079270:five_prime_UTR 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7_2:78312145-78312164 Msa1079270:five_prime_UTR 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7_2:78312218-78312237 None:intergenic 35.0%
ATTCATCTCAAACATGCAGT+GGG + chr7_2:78312356-78312375 None:intergenic 35.0%
!! GAAAAAGGTGCTGAATTTCT+CGG - chr7_2:78312376-78312395 Msa1079270:five_prime_UTR 35.0%
CATGAGCTAATTGTTATAGC+TGG + chr7_2:78309993-78310012 None:intergenic 35.0%
AAGTGGCCATATAGTTTATG+GGG + chr7_2:78310021-78310040 None:intergenic 35.0%
CTAAATGCTGTAAAAGAGAC+TGG + chr7_2:78310087-78310106 None:intergenic 35.0%
! CAGTCTCTTTTACAGCATTT+AGG - chr7_2:78310085-78310104 Msa1079270:CDS 35.0%
AGGTGAAAACAAAGGCTTAT+TGG + chr7_2:78310160-78310179 None:intergenic 35.0%
!!! AATAAGCCTTTGTTTTCACC+TGG - chr7_2:78310159-78310178 Msa1079270:CDS 35.0%
! AAAGTACCAGGTGAAAACAA+AGG + chr7_2:78310168-78310187 None:intergenic 35.0%
!! AAAGGTTTTCACAAAGTACC+AGG + chr7_2:78310180-78310199 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7_2:78310331-78310350 None:intergenic 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7_2:78310333-78310352 Msa1079270:CDS 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7_2:78310354-78310373 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7_2:78310451-78310470 Msa1079270:CDS 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7_2:78310490-78310509 Msa1079270:CDS 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7_2:78310566-78310585 Msa1079270:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7_2:78310624-78310643 None:intergenic 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7_2:78310622-78310641 Msa1079270:CDS 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7_2:78310635-78310654 None:intergenic 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7_2:78310706-78310725 None:intergenic 35.0%
AAAGCTCACACTAAAACTTG+TGG - chr7_2:78310800-78310819 Msa1079270:intron 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7_2:78310827-78310846 Msa1079270:intron 35.0%
! AATGGTACATTTTACTGCAC+AGG - chr7_2:78311561-78311580 Msa1079270:CDS 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7_2:78311673-78311692 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7_2:78311701-78311720 Msa1079270:CDS 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7_2:78311719-78311738 Msa1079270:CDS 35.0%
AAAGACCAAACTTGTCATTG+TGG - chr7_2:78311789-78311808 Msa1079270:CDS 35.0%
TTCAACCACAATGACAAGTT+TGG + chr7_2:78311797-78311816 None:intergenic 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7_2:78312020-78312039 None:intergenic 35.0%
TGACCATATTAACCTCATCA+TGG + chr7_2:78312051-78312070 None:intergenic 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7_2:78312128-78312147 Msa1079270:five_prime_UTR 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7_2:78312145-78312164 Msa1079270:five_prime_UTR 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7_2:78312218-78312237 None:intergenic 35.0%
ATTCATCTCAAACATGCAGT+GGG + chr7_2:78312356-78312375 None:intergenic 35.0%
GCACAACCCCATAAACTATA+TGG - chr7_2:78310012-78310031 Msa1079270:three_prime_UTR 40.0%
TAATCACTTATATCCCGCCA+AGG - chr7_2:78310061-78310080 Msa1079270:exon 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7_2:78310254-78310273 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7_2:78310255-78310274 None:intergenic 40.0%
TGTGGAAGAGGATAGTGAAA+AGG + chr7_2:78310256-78310275 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+AGG - chr7_2:78310255-78310274 Msa1079270:CDS 40.0%
AAGTTTGTCAAAACCTCCTG+TGG + chr7_2:78310274-78310293 None:intergenic 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7_2:78310308-78310327 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7_2:78310480-78310499 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7_2:78310523-78310542 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7_2:78310527-78310546 Msa1079270:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7_2:78310556-78310575 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7_2:78310598-78310617 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7_2:78310597-78310616 Msa1079270:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7_2:78310615-78310634 Msa1079270:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7_2:78310637-78310656 Msa1079270:CDS 40.0%
GAAAACACGGTGAGAAGAAA+TGG - chr7_2:78310732-78310751 Msa1079270:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7_2:78311565-78311584 Msa1079270:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7_2:78311755-78311774 Msa1079270:CDS 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7_2:78311932-78311951 Msa1079270:intron 40.0%
TAGTAGTAGTAGTGCAGCTA+TGG - chr7_2:78312111-78312130 Msa1079270:exon 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7_2:78312127-78312146 Msa1079270:five_prime_UTR 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7_2:78312180-78312199 None:intergenic 40.0%
CATTCATCTCAAACATGCAG+TGG + chr7_2:78312357-78312376 None:intergenic 40.0%
GCACAACCCCATAAACTATA+TGG - chr7_2:78310012-78310031 Msa1079270:three_prime_UTR 40.0%
TAATCACTTATATCCCGCCA+AGG - chr7_2:78310061-78310080 Msa1079270:exon 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7_2:78310254-78310273 None:intergenic 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7_2:78310255-78310274 None:intergenic 40.0%
TGTGGAAGAGGATAGTGAAA+AGG + chr7_2:78310256-78310275 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+AGG - chr7_2:78310255-78310274 Msa1079270:CDS 40.0%
AAGTTTGTCAAAACCTCCTG+TGG + chr7_2:78310274-78310293 None:intergenic 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7_2:78310308-78310327 None:intergenic 40.0%
TGGAGAAAGAGCAATGACTT+CGG + chr7_2:78310480-78310499 None:intergenic 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7_2:78310523-78310542 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7_2:78310527-78310546 Msa1079270:CDS 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7_2:78310556-78310575 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7_2:78310598-78310617 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7_2:78310597-78310616 Msa1079270:CDS 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7_2:78310615-78310634 Msa1079270:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7_2:78310637-78310656 Msa1079270:CDS 40.0%
GAAAACACGGTGAGAAGAAA+TGG - chr7_2:78310732-78310751 Msa1079270:CDS 40.0%
! GTACATTTTACTGCACAGGA+AGG - chr7_2:78311565-78311584 Msa1079270:CDS 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7_2:78311755-78311774 Msa1079270:CDS 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7_2:78311932-78311951 Msa1079270:intron 40.0%
TAGTAGTAGTAGTGCAGCTA+TGG - chr7_2:78312111-78312130 Msa1079270:exon 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7_2:78312127-78312146 Msa1079270:five_prime_UTR 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7_2:78312180-78312199 None:intergenic 40.0%
CATTCATCTCAAACATGCAG+TGG + chr7_2:78312357-78312376 None:intergenic 40.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7_2:78310309-78310328 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7_2:78310314-78310333 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7_2:78310315-78310334 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7_2:78310321-78310340 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7_2:78310324-78310343 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7_2:78310342-78310361 Msa1079270:CDS 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7_2:78310500-78310519 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7_2:78310602-78310621 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7_2:78310843-78310862 Msa1079270:intron 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7_2:78311770-78311789 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7_2:78311914-78311933 None:intergenic 45.0%
GCTGCACTACTACTACTACT+TGG + chr7_2:78312109-78312128 None:intergenic 45.0%
AGTAGTAGTGCAGCTATGGT+TGG - chr7_2:78312115-78312134 Msa1079270:exon 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7_2:78310309-78310328 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7_2:78310314-78310333 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7_2:78310315-78310334 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7_2:78310321-78310340 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7_2:78310324-78310343 None:intergenic 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7_2:78310342-78310361 Msa1079270:CDS 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7_2:78310500-78310519 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7_2:78310602-78310621 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7_2:78310843-78310862 Msa1079270:intron 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7_2:78311770-78311789 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7_2:78311914-78311933 None:intergenic 45.0%
GCTGCACTACTACTACTACT+TGG + chr7_2:78312109-78312128 None:intergenic 45.0%
AGTAGTAGTGCAGCTATGGT+TGG - chr7_2:78312115-78312134 Msa1079270:exon 45.0%
!! TAAAAGAGACTGGCCTTGGC+GGG + chr7_2:78310077-78310096 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG + chr7_2:78310078-78310097 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG + chr7_2:78310081-78310100 None:intergenic 50.0%
TCACTATCCTCTTCCACAGG+AGG - chr7_2:78310258-78310277 Msa1079270:CDS 50.0%
GTCAAAACCTCCTGTGGAAG+AGG + chr7_2:78310268-78310287 None:intergenic 50.0%
AGAGCAATGACTTCGGCATC+CGG + chr7_2:78310473-78310492 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7_2:78310582-78310601 Msa1079270:CDS 50.0%
! GCAAGCTTTGCTAGCTCTTG+AGG + chr7_2:78312193-78312212 None:intergenic 50.0%
!! TAAAAGAGACTGGCCTTGGC+GGG + chr7_2:78310077-78310096 None:intergenic 50.0%
!! GTAAAAGAGACTGGCCTTGG+CGG + chr7_2:78310078-78310097 None:intergenic 50.0%
!! GCTGTAAAAGAGACTGGCCT+TGG + chr7_2:78310081-78310100 None:intergenic 50.0%
TCACTATCCTCTTCCACAGG+AGG - chr7_2:78310258-78310277 Msa1079270:CDS 50.0%
GTCAAAACCTCCTGTGGAAG+AGG + chr7_2:78310268-78310287 None:intergenic 50.0%
AGAGCAATGACTTCGGCATC+CGG + chr7_2:78310473-78310492 None:intergenic 50.0%
GAAGAGGTCACAACCTACCA+TGG - chr7_2:78310582-78310601 Msa1079270:CDS 50.0%
! GCAAGCTTTGCTAGCTCTTG+AGG + chr7_2:78312193-78312212 None:intergenic 50.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7_2:78310659-78310678 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG - chr7_2:78310664-78310683 Msa1079270:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7_2:78310696-78310715 None:intergenic 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7_2:78310659-78310678 None:intergenic 55.0%
GACCTGTGTCCACCATGATG+CGG - chr7_2:78310664-78310683 Msa1079270:CDS 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7_2:78310696-78310715 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7_2:78310658-78310677 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7_2:78310670-78310689 Msa1079270:CDS 60.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7_2:78310658-78310677 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7_2:78310670-78310689 Msa1079270:CDS 60.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7_2:78310669-78310688 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7_2:78310669-78310688 Msa1079270:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7_2:78310677-78310696 Msa1079270:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7_2:78310689-78310708 Msa1079270:CDS 65.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7_2:78310669-78310688 None:intergenic 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7_2:78310669-78310688 Msa1079270:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7_2:78310677-78310696 Msa1079270:CDS 65.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7_2:78310689-78310708 Msa1079270:CDS 65.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7_2:78310676-78310695 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7_2:78310679-78310698 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7_2:78310676-78310695 Msa1079270:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7_2:78310690-78310709 None:intergenic 70.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7_2:78310676-78310695 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7_2:78310679-78310698 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7_2:78310676-78310695 Msa1079270:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7_2:78310690-78310709 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78309952 78312397 78309952 ID=Msa1079270;Name=Msa1079270
chr7_2 mRNA 78309952 78312397 78309952 ID=Msa1079270-mRNA-1;Parent=Msa1079270;Name=Msa1079270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=282|1|1|1|1|1|3|121|406
chr7_2 exon 78309952 78310766 78309952 ID=Msa1079270-mRNA-1:exon:19514;Parent=Msa1079270-mRNA-1
chr7_2 exon 78311485 78311881 78311485 ID=Msa1079270-mRNA-1:exon:19513;Parent=Msa1079270-mRNA-1
chr7_2 exon 78311986 78312397 78311986 ID=Msa1079270-mRNA-1:exon:19512;Parent=Msa1079270-mRNA-1
chr7_2 five_prime_UTR 78312116 78312397 78312116 ID=Msa1079270-mRNA-1:five_prime_utr;Parent=Msa1079270-mRNA-1
chr7_2 CDS 78311986 78312115 78311986 ID=Msa1079270-mRNA-1:cds;Parent=Msa1079270-mRNA-1
chr7_2 CDS 78311485 78311881 78311485 ID=Msa1079270-mRNA-1:cds;Parent=Msa1079270-mRNA-1
chr7_2 CDS 78310073 78310766 78310073 ID=Msa1079270-mRNA-1:cds;Parent=Msa1079270-mRNA-1
chr7_2 three_prime_UTR 78309952 78310072 78309952 ID=Msa1079270-mRNA-1:three_prime_utr;Parent=Msa1079270-mRNA-1
Gene Sequence

>Msa1079270

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACAGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCGGATGCCGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACACGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCATTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATTCACATTCAATTGATCATGTTTCATCAGATTTTTCTAATGTTATGCAAATGGCTCAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGTACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTAGTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGCTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA
Protein sequence

>Msa1079270

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHSHSIDHVSSDFSNVMQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSSSAAMVGNSSGFRDFLGVSNHQFLPQELAKLASISSSMMSLNQFNAGCINEN*