AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079280 MtrunA17_Chr7g0264171 95.098 612 28 2 1 612 1 610 0.0 1215
Msa1079280 MtrunA17_Chr1g0181211 54.281 619 248 12 22 620 18 621 0.0 616
Msa1079280 MtrunA17_Chr7g0264161 77.586 348 31 2 40 387 1 301 0.0 548
Msa1079280 MtrunA17_Chr2g0326761 52.737 548 224 11 21 556 1 525 0.0 541
Msa1079280 MtrunA17_Chr4g0028971 54.174 539 227 10 28 556 9 537 0.0 535
Msa1079280 MtrunA17_Chr1g0199681 49.228 583 232 18 22 567 85 640 2.43e-166 491
Msa1079280 MtrunA17_Chr3g0115271 41.714 525 255 17 27 538 15 501 5.97e-115 355
Msa1079280 MtrunA17_Chr5g0424931 39.535 516 227 17 26 514 14 471 1.47e-98 311
Msa1079280 MtrunA17_Chr5g0417281 32.984 573 258 17 26 557 6 493 5.48e-83 270
Msa1079280 MtrunA17_Chr5g0436761 35.991 439 206 10 26 453 7 381 2.14e-77 253
Msa1079280 MtrunA17_Chr1g0156321 33.974 468 222 14 24 463 36 444 1.58e-70 244
Msa1079280 MtrunA17_Chr4g0046371 38.931 393 178 12 27 407 34 376 2.04e-69 238
Msa1079280 MtrunA17_Chr1g0178011 32.569 436 231 8 26 456 7 384 2.70e-68 229
Msa1079280 MtrunA17_Chr2g0276781 36.150 426 212 10 23 441 15 387 8.97e-68 233
Msa1079280 MtrunA17_Chr2g0285461 35.646 418 210 10 26 435 18 384 1.70e-67 236
Msa1079280 MtrunA17_Chr5g0433301 35.589 399 199 9 26 416 19 367 1.88e-65 230
Msa1079280 MtrunA17_Chr7g0239061 35.422 415 203 11 31 435 14 373 4.06e-65 226
Msa1079280 MtrunA17_Chr3g0109391 35.338 399 200 9 26 416 21 369 9.20e-65 228
Msa1079280 MtrunA17_Chr8g0385791 36.473 414 202 12 31 436 59 419 1.18e-64 228
Msa1079280 MtrunA17_Chr8g0376771 35.252 417 212 11 26 435 18 383 1.66e-64 228
Msa1079280 MtrunA17_Chr2g0277461 34.783 414 194 16 28 431 10 357 1.56e-63 216
Msa1079280 MtrunA17_Chr5g0417211 34.826 402 173 12 28 415 9 335 2.78e-61 209
Msa1079280 MtrunA17_Chr8g0346711 35.280 411 205 9 25 428 23 379 5.78e-61 214
Msa1079280 MtrunA17_Chr2g0326281 34.353 425 203 11 31 428 56 431 1.32e-60 216
Msa1079280 MtrunA17_Chr2g0301251 36.641 393 187 10 26 409 18 357 3.77e-60 217
Msa1079280 MtrunA17_Chr4g0070181 33.806 423 208 12 26 436 18 380 4.65e-60 217
Msa1079280 MtrunA17_Chr4g0029671 34.793 411 202 11 31 426 54 413 1.34e-59 213
Msa1079280 MtrunA17_Chr4g0009751 34.458 415 210 11 29 434 17 378 8.19e-58 205
Msa1079280 MtrunA17_Chr2g0289221 48.357 213 97 4 28 232 17 224 2.00e-57 197
Msa1079280 MtrunA17_Chr8g0389081 46.759 216 104 3 28 236 29 240 3.60e-56 205
Msa1079280 MtrunA17_Chr8g0389081 38.000 100 59 3 313 410 271 369 1.61e-11 67.8
Msa1079280 MtrunA17_Chr2g0282961 47.196 214 103 4 27 233 49 259 1.83e-52 190
Msa1079280 MtrunA17_Chr2g0282961 35.455 110 66 3 299 407 282 387 2.20e-14 76.3
Msa1079280 MtrunA17_Chr5g0425261 31.592 402 191 13 28 414 9 341 2.64e-49 176
Msa1079280 MtrunA17_Chr5g0424801 31.061 396 190 12 28 408 9 336 1.79e-48 174
Msa1079280 MtrunA17_Chr5g0424741 28.107 523 249 19 26 477 7 473 3.12e-42 159
Msa1079280 MtrunA17_Chr2g0277531 38.028 213 119 6 28 232 17 224 2.07e-37 141
Msa1079280 MtrunA17_Chr5g0425661 35.468 203 112 3 27 220 33 225 3.28e-37 138
Msa1079280 MtrunA17_Chr8g0356211 29.595 321 158 12 140 455 2 259 9.25e-31 122
Msa1079280 MtrunA17_Chr5g0425651 36.585 123 68 4 302 416 1 121 7.58e-18 80.1
Msa1079280 MtrunA17_Chr5g0424791 30.921 152 93 4 77 228 12 151 1.94e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079280 AT4G30080.1 54.737 475 183 11 26 488 14 468 3.31e-167 493
Msa1079280 AT2G28350.2 46.777 605 264 16 26 601 5 580 6.40e-163 482
Msa1079280 AT2G28350.1 46.777 605 264 16 26 601 5 580 9.37e-163 482
Msa1079280 AT1G77850.1 37.862 552 306 10 25 564 13 539 1.62e-112 349
Msa1079280 AT1G77850.2 37.862 552 306 10 25 564 13 539 2.01e-112 349
Msa1079280 AT1G30330.3 34.763 443 224 11 1 435 1 386 1.34e-68 240
Msa1079280 AT1G30330.2 34.763 443 224 11 1 435 1 386 1.34e-68 240
Msa1079280 AT1G19850.2 35.697 409 193 11 15 407 23 377 1.46e-68 239
Msa1079280 AT1G19850.1 35.697 409 193 11 15 407 34 388 1.59e-68 239
Msa1079280 AT1G59750.4 34.038 520 272 14 31 537 22 483 6.31e-68 234
Msa1079280 AT1G59750.1 33.908 522 275 15 31 537 22 488 6.79e-68 234
Msa1079280 AT1G59750.3 33.908 522 275 15 31 537 22 488 6.79e-68 234
Msa1079280 AT1G30330.1 35.407 418 211 10 26 435 18 384 1.18e-67 238
Msa1079280 AT1G59750.2 34.226 523 269 16 31 537 22 485 1.61e-67 233
Msa1079280 AT5G37020.2 35.088 399 201 9 26 416 17 365 2.54e-66 231
Msa1079280 AT5G37020.1 35.088 399 201 9 26 416 17 365 4.05e-66 231
Msa1079280 AT5G60450.2 35.012 417 209 10 22 425 32 399 4.89e-66 231
Msa1079280 AT5G62000.2 34.932 438 219 11 2 426 26 410 1.26e-65 231
Msa1079280 AT5G62000.5 34.932 438 219 11 2 426 26 410 1.26e-65 231
Msa1079280 AT5G62000.3 34.932 438 219 11 2 426 26 410 1.26e-65 231
Msa1079280 AT5G62000.1 34.932 438 219 11 2 426 26 410 1.26e-65 231
Msa1079280 AT5G60450.1 35.294 408 202 10 31 425 65 423 1.88e-65 229
Msa1079280 AT5G62000.4 34.932 438 219 11 2 426 26 410 1.93e-65 230
Msa1079280 AT2G33860.1 33.190 464 239 14 31 476 54 464 9.39e-65 224
Msa1079280 AT3G61830.1 34.107 431 214 12 31 452 25 394 4.45e-60 211
Msa1079280 AT2G46530.1 34.456 386 188 10 31 407 21 350 7.25e-60 211
Msa1079280 AT2G46530.3 34.456 386 188 10 31 407 42 371 1.23e-59 210
Msa1079280 AT1G34310.1 34.975 406 202 10 28 428 24 372 5.53e-57 202
Msa1079280 AT1G35240.1 34.307 411 204 11 31 435 27 377 5.54e-57 202
Msa1079280 AT1G35520.1 34.390 410 205 10 31 435 27 377 2.30e-56 201
Msa1079280 AT1G34410.1 33.902 410 207 10 31 435 27 377 1.08e-55 199
Msa1079280 AT1G19220.1 45.622 217 108 3 26 236 18 230 1.27e-54 201
Msa1079280 AT1G19220.1 36.220 127 78 3 313 438 261 385 6.54e-14 75.9
Msa1079280 AT1G35540.1 33.750 400 204 9 31 425 27 370 1.70e-53 193
Msa1079280 AT5G20730.3 43.318 217 113 3 26 236 19 231 3.01e-53 197
Msa1079280 AT5G20730.3 34.375 128 80 4 313 438 262 387 4.90e-12 69.7
Msa1079280 AT5G20730.2 43.318 217 113 3 26 236 19 231 4.24e-53 197
Msa1079280 AT5G20730.2 33.858 127 81 3 313 438 262 386 6.21e-13 72.8
Msa1079280 AT5G20730.1 43.318 217 113 3 26 236 19 231 4.41e-53 197
Msa1079280 AT5G20730.1 34.375 128 80 4 313 438 262 387 4.37e-12 70.1
Msa1079280 AT4G23980.2 30.676 414 227 9 31 437 12 372 3.94e-52 190
Msa1079280 AT4G23980.1 31.343 402 216 9 31 425 12 360 4.06e-52 190
Msa1079280 AT1G34170.1 32.187 407 211 10 9 407 3 352 3.24e-50 182
Msa1079280 AT3G61830.2 34.454 357 170 10 73 426 22 317 3.66e-49 180
Msa1079280 AT5G37020.3 36.934 287 132 7 132 416 31 270 3.55e-47 177
Msa1079280 AT2G33860.2 33.427 356 176 11 132 476 2 307 8.51e-47 171
Msa1079280 AT1G34390.1 32.432 407 203 11 31 428 27 370 3.36e-46 172
Msa1079280 AT1G34170.2 30.958 407 190 10 9 407 3 326 7.13e-44 164
Msa1079280 AT1G34170.3 30.958 407 190 10 9 407 3 326 2.78e-43 163
Msa1079280 AT2G46530.2 34.173 278 132 6 131 407 36 263 2.05e-41 157
Msa1079280 AT1G43950.1 37.864 206 113 6 31 231 27 222 2.97e-33 127
Msa1079280 ATMG00940.1 33.537 164 93 3 219 382 1 148 1.51e-20 89.4
Msa1079280 AT3G25730.1 27.807 187 107 4 82 255 122 293 1.49e-12 69.7
Msa1079280 AT2G46870.1 36.458 96 60 1 125 220 28 122 3.35e-11 65.5
Msa1079280 AT1G13260.1 31.507 146 73 5 111 252 171 293 8.83e-11 64.3

Find 151 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGTTGGCATTGGAAAT+TGG 0.228346 7_2:+78327853 None:intergenic
TGGAATGAAAGACGGAATTT+TGG 0.237258 7_2:+78329565 None:intergenic
TGGCCATCAATTGGGAAATC+TGG 0.249420 7_2:+78327873 None:intergenic
GGCATTTCAGGCACGTTTAT+AGG 0.250063 7_2:-78329232 Msa1079280:CDS
GCATTTCAGGCACGTTTATA+GGG 0.272489 7_2:-78329231 Msa1079280:CDS
CTTGTGAAAACTTCTTTAAT+TGG 0.278075 7_2:-78328795 Msa1079280:CDS
CAGCTATGGCATGCCGTTGC+AGG 0.280375 7_2:-78329686 Msa1079280:CDS
CAACGTGTCTGAAATAATTA+AGG 0.291929 7_2:-78329420 Msa1079280:CDS
ATGGCGAAAAGTGGCATTTC+AGG 0.309403 7_2:-78329244 Msa1079280:CDS
CGGAACTATTGCTTCTGTTC+AGG 0.311558 7_2:-78328685 Msa1079280:CDS
GTTGGAGTCGATCCTTTGTT+AGG 0.313766 7_2:-78329062 Msa1079280:CDS
CTCCCAGATTTCCCAATTGA+TGG 0.331554 7_2:-78327876 Msa1079280:CDS
TTAGGATTTAGAAGGTTGTT+TGG 0.339574 7_2:+78327831 None:intergenic
TTCAGCTAACCCTCCTCTTC+AGG 0.348707 7_2:-78329288 Msa1079280:CDS
TTGGAATATTAGGATTTAGA+AGG 0.349891 7_2:+78327823 None:intergenic
TTGGAATTCGGAGGGCTAAA+AGG 0.350812 7_2:-78329094 Msa1079280:CDS
TATTATTATTAAACGGTTGT+TGG 0.355810 7_2:+78327685 None:intergenic
ATTGGAAATTGGCCATCAAT+TGG 0.356580 7_2:+78327864 None:intergenic
CATGCCGGCAGGACTAGTTT+CGG 0.360765 7_2:+78327788 None:intergenic
AGAAGGTTGTTTGGAAAAGT+TGG 0.365277 7_2:+78327840 None:intergenic
TGGAAATCTGGTAGTGGAAT+TGG 0.365957 7_2:-78329038 Msa1079280:CDS
CTGCGAATGTTTCTTCGCAT+TGG 0.366575 7_2:+78327382 None:intergenic
CAGTGTCGACTTGTATTGTT+TGG 0.368403 7_2:+78327511 None:intergenic
AATGGAAGATTATGAAAATC+TGG 0.372719 7_2:+78327729 None:intergenic
TTTGCAATGCCAAGTTATTA+GGG 0.373972 7_2:+78327640 None:intergenic
TCAAGGATAAGTTGGTTTAT+CGG 0.374081 7_2:-78328705 Msa1079280:CDS
GGAGCCAGGCATGGTCATTT+CGG 0.375741 7_2:-78327762 Msa1079280:CDS
TTTGATAATGATGGTGTTGC+TGG 0.376636 7_2:-78329446 Msa1079280:CDS
CTAACTTGGTTAATATTCAT+AGG 0.385591 7_2:+78329470 None:intergenic
CCTTTGTTAGGGTGGAAATC+TGG 0.395570 7_2:-78329050 Msa1079280:CDS
GGTAATCTCAATTTCTTCCT+TGG 0.395833 7_2:+78327903 None:intergenic
AAGAGGCATTTGTTGACAAC+TGG 0.395938 7_2:-78329200 Msa1079280:CDS
TTGGAACAGCACTTCAGATT+AGG 0.401029 7_2:-78328776 Msa1079280:CDS
GCGATCTTCATGTTGGAATT+CGG 0.404653 7_2:-78329106 Msa1079280:CDS
CTGGCTCCCTGCATGCCGGC+AGG 0.407927 7_2:+78327777 None:intergenic
GCCATCTTGAACCTCATTCC+AGG 0.409391 7_2:+78328747 None:intergenic
TTAAACGGTTGTTGGAAACT+AGG 0.416552 7_2:+78327693 None:intergenic
AACTAGTCCTGCCGGCATGC+AGG 0.419630 7_2:-78327784 Msa1079280:CDS
CAATCCAACTGAGATGAATA+TGG 0.421601 7_2:-78329753 Msa1079280:CDS
AAAACATGTGAGTTAACTTC+TGG 0.421701 7_2:+78329647 None:intergenic
AGCGACAAGAAACTTGCGTC+TGG 0.427650 7_2:-78329161 Msa1079280:CDS
TTGGAAATTGGCCATCAATT+GGG 0.428714 7_2:+78327865 None:intergenic
TGCACAATCTTCAGAGAAAC+CGG 0.428735 7_2:-78327568 Msa1079280:CDS
GTCGCAATATTATTATTAAA+CGG 0.430671 7_2:+78327678 None:intergenic
CTTATTGCTTCAACTCTACA+TGG 0.431451 7_2:+78329545 None:intergenic
CTGCCGGCATGCAGGGAGCC+AGG 0.432868 7_2:-78327776 Msa1079280:CDS
ACATTAGAGATGAAACATTC+AGG 0.433701 7_2:-78327354 Msa1079280:intron
GAAATGTTCTCACTGGTGTT+CGG 0.434122 7_2:+78327615 None:intergenic
AGTTGAAGCAATAAGATATA+TGG 0.445009 7_2:-78329537 Msa1079280:CDS
CTAGGCTGAAAGAGACCTAA+TGG 0.448362 7_2:+78327711 None:intergenic
CATCATTATCAAAACTAACT+TGG 0.449861 7_2:+78329456 None:intergenic
TGATGAGTCCTCAGTTTCAA+TGG 0.449908 7_2:+78328725 None:intergenic
GATAATAAACTTCGAAGAAA+CGG 0.452871 7_2:-78328963 Msa1079280:CDS
GCTAATAAGTGATGGAATGA+TGG 0.454476 7_2:-78328925 Msa1079280:CDS
ATGCCGGCAGGACTAGTTTC+GGG 0.456648 7_2:+78327789 None:intergenic
TTCTTCCTTGGCGGTATGAA+AGG 0.458131 7_2:+78327915 None:intergenic
CGCCGAGCATGCATGTGAAC+CGG 0.459270 7_2:-78329606 Msa1079280:CDS
AGTTTCTTGTCGCTGACAAA+AGG 0.461470 7_2:+78329170 None:intergenic
GTGGTTTATTATCCTCGGTC+AGG 0.470650 7_2:-78328831 Msa1079280:CDS
CACCGGTTCACATGCATGCT+CGG 0.471821 7_2:+78329604 None:intergenic
AAGTGATGGAATGATGGGTA+GGG 0.472687 7_2:-78328919 Msa1079280:CDS
GACTCCATATTCATCTCAGT+TGG 0.472803 7_2:+78329749 None:intergenic
TTGGAGTCGATCCTTTGTTA+GGG 0.473989 7_2:-78329061 Msa1079280:CDS
ATTTGTCCTGCACCACCTTA+CGG 0.476461 7_2:-78329014 Msa1079280:CDS
CGAAGAAACGGTAAAGGTAA+TGG 0.476494 7_2:-78328951 Msa1079280:CDS
GTTGTCAACAAATGCCTCTT+CGG 0.480938 7_2:+78329203 None:intergenic
TTGATGTGGTTTATTATCCT+CGG 0.489017 7_2:-78328836 Msa1079280:CDS
TTGTTTGGAAAAGTTGGCAT+TGG 0.489751 7_2:+78327846 None:intergenic
GGATAATAAACCACATCAAA+CGG 0.491751 7_2:+78328840 None:intergenic
GGCCATCAATTGGGAAATCT+GGG 0.492331 7_2:+78327874 None:intergenic
AGGACTCATCAAGGATAAGT+TGG 0.493550 7_2:-78328713 Msa1079280:CDS
CTTCAGATTAGGTGGTGTCC+TGG 0.494054 7_2:-78328765 Msa1079280:CDS
TGGTGCGGCTTTGCATGATC+CGG 0.495348 7_2:+78327549 None:intergenic
AATCTCAATTTCTTCCTTGG+CGG 0.497432 7_2:+78327906 None:intergenic
CATCAGATGTACGTGTCGGC+AGG 0.505339 7_2:+78327430 None:intergenic
TAAGTGATGGAATGATGGGT+AGG 0.517866 7_2:-78328920 Msa1079280:CDS
TTCAGGCTGCTGATCCGTCA+TGG 0.519149 7_2:-78328668 Msa1079280:CDS
ACTAGTCCTGCCGGCATGCA+GGG 0.520362 7_2:-78327783 Msa1079280:CDS
ATCTTCATGTTGGAATTCGG+AGG 0.523611 7_2:-78329103 Msa1079280:CDS
GATGACTGTCCCTAATAACT+TGG 0.526305 7_2:-78327649 Msa1079280:CDS
GGCATGCAGGGAGCCAGGCA+TGG 0.527776 7_2:-78327771 Msa1079280:CDS
AAGACCGAAATGACCATGCC+TGG 0.532259 7_2:+78327758 None:intergenic
AATCCTCCGTAAGGTGGTGC+AGG 0.533772 7_2:+78329008 None:intergenic
TTAGGGTGGAAATCTGGTAG+TGG 0.537403 7_2:-78329044 Msa1079280:CDS
AGCGTTTCTGCACAATATCT+AGG 0.540389 7_2:+78329329 None:intergenic
GCGACAAGAAACTTGCGTCT+GGG 0.540853 7_2:-78329160 Msa1079280:CDS
GGCGGTATGAAAGGCGAAAG+AGG 0.541655 7_2:+78327924 None:intergenic
GAGTAAGCACTGAAATTCAC+CGG 0.548533 7_2:+78329587 None:intergenic
AGGATGTTCATGGCGAAAAG+TGG 0.550349 7_2:-78329253 Msa1079280:CDS
CGACAAGAAACTTGCGTCTG+GGG 0.550603 7_2:-78329159 Msa1079280:CDS
AATGGATTGCTAATAAGTGA+TGG 0.550837 7_2:-78328933 Msa1079280:CDS
TTACCCGAAACTAGTCCTGC+CGG 0.553790 7_2:-78327792 Msa1079280:CDS
AAGATTATGAAAATCTGGTA+AGG 0.555027 7_2:+78327734 None:intergenic
GCTAAAAGGCGAAATAATGT+TGG 0.555377 7_2:-78329080 Msa1079280:CDS
ATGCCTGGCTCCCTGCATGC+CGG 0.557141 7_2:+78327773 None:intergenic
GTGATGGAATGATGGGTAGG+GGG 0.558347 7_2:-78328917 Msa1079280:CDS
CATTTCAGGCACGTTTATAG+GGG 0.562067 7_2:-78329230 Msa1079280:CDS
TTGCACCATTCCTCCTGCAA+CGG 0.567997 7_2:+78329673 None:intergenic
AGTGATGGAATGATGGGTAG+GGG 0.568376 7_2:-78328918 Msa1079280:CDS
GGCATTTGTTGACAACTGGA+TGG 0.569244 7_2:-78329196 Msa1079280:CDS
TTAGGTGGTGTCCTGGAATG+AGG 0.569864 7_2:-78328758 Msa1079280:CDS
ATTGGGAAATCTGGGAGTTG+AGG 0.570713 7_2:+78327882 None:intergenic
TTGAAACTGAGGACTCATCA+AGG 0.572823 7_2:-78328722 Msa1079280:CDS
AAACTTCGAAGAAACGGTAA+AGG 0.575815 7_2:-78328957 Msa1079280:CDS
GAGACTTCATCAGAAAAGCT+AGG 0.576418 7_2:-78327251 Msa1079280:CDS
AACGATGGAAATCCTCCGTA+AGG 0.577357 7_2:+78328999 None:intergenic
GAAAACGGCGATCTTCATGT+TGG 0.577451 7_2:-78329113 Msa1079280:CDS
AGAGTGTGGACCCTCAGCTA+TGG 0.582931 7_2:-78329700 Msa1079280:CDS
GAGTCGATCCTTTGTTAGGG+TGG 0.585067 7_2:-78329058 Msa1079280:CDS
CTATGGCATGCCGTTGCAGG+AGG 0.585809 7_2:-78329683 Msa1079280:CDS
TAATATGCAGCCGTTTGATG+TGG 0.585844 7_2:-78328850 Msa1079280:CDS
AAGTTATTAGGGACAGTCAT+CGG 0.589613 7_2:+78327651 None:intergenic
CTAATAAGTGATGGAATGAT+GGG 0.591799 7_2:-78328924 Msa1079280:CDS
GCAACGGCATGCCATAGCTG+AGG 0.591988 7_2:+78329689 None:intergenic
GCATGCTCGGCGTGACCCTG+AGG 0.592711 7_2:+78329617 None:intergenic
CATGCTCGGCGTGACCCTGA+GGG 0.593580 7_2:+78329618 None:intergenic
CGTCATGGTCTGATTCTATG+TGG 0.597184 7_2:-78328653 Msa1079280:CDS
GTTTGCATCAGATTGTGTCA+AGG 0.603398 7_2:+78329373 None:intergenic
CGAGCATGAAATGTTCTCAC+TGG 0.604009 7_2:+78327608 None:intergenic
GCATGCCGTTGCAGGAGGAA+TGG 0.606658 7_2:-78329678 Msa1079280:CDS
ATGAAGTGTATGCAAAACTC+AGG 0.607388 7_2:-78329499 Msa1079280:CDS
GATACTATTTCAACTTGCCA+CGG 0.610748 7_2:+78327963 None:intergenic
GCGGTATGAAAGGCGAAAGA+GGG 0.612138 7_2:+78327925 None:intergenic
ACTCTACATGGAATGAAAGA+CGG 0.613123 7_2:+78329557 None:intergenic
CAACGGCATGCCATAGCTGA+GGG 0.613865 7_2:+78329690 None:intergenic
TCCTGGAATGAGGTTCAAGA+TGG 0.614384 7_2:-78328748 Msa1079280:CDS
TCTTCATGTTGGAATTCGGA+GGG 0.615735 7_2:-78329102 Msa1079280:CDS
TTTCGCCTTTCATACCGCCA+AGG 0.619271 7_2:-78327920 Msa1079280:CDS
TCTTCCTCTCCCGAAAACGA+TGG 0.620463 7_2:+78328984 None:intergenic
GAACAGCACTTCAGATTAGG+TGG 0.620797 7_2:-78328773 Msa1079280:CDS
GTTATTGAAGCAATAAAACT+CGG 0.633322 7_2:-78328876 Msa1079280:CDS
CCAGATTTCCACCCTAACAA+AGG 0.634082 7_2:+78329050 None:intergenic
CTCTCATCAGATGTACGTGT+CGG 0.637287 7_2:+78327426 None:intergenic
CAAGATGGCCATTGAAACTG+AGG 0.643200 7_2:-78328733 Msa1079280:CDS
AAAGGCGAAAGAGGGATCGA+AGG 0.643435 7_2:+78327933 None:intergenic
GATGGAAATCCTCCGTAAGG+TGG 0.645097 7_2:+78329002 None:intergenic
TTCTATGTGGAGACTTCTCG+AGG 0.645176 7_2:-78328640 Msa1079280:intron
ATGTGAAAAGAGTGAATCCG+TGG 0.650057 7_2:-78327980 Msa1079280:CDS
CAAACAATACAAGTCGACAC+TGG 0.651728 7_2:-78327510 Msa1079280:CDS
TCTGATGCAAACAATGGTGG+TGG 0.655667 7_2:-78329362 Msa1079280:CDS
CAATGCGAAGAAACATTCGC+AGG 0.655730 7_2:-78327381 Msa1079280:CDS
CATCTGATGAGAGGTTCGAG+TGG 0.680653 7_2:-78327416 Msa1079280:CDS
TGTCCTGCACCACCTTACGG+AGG 0.685773 7_2:-78329011 Msa1079280:CDS
CACATAGAATCAGACCATGA+CGG 0.689130 7_2:+78328654 None:intergenic
CGACACGTACATCTGATGAG+AGG 0.689516 7_2:-78327425 Msa1079280:CDS
ACTTCATCAGAAAAGCTAGG+AGG 0.691502 7_2:-78327248 Msa1079280:CDS
ACACAATCTGATGCAAACAA+TGG 0.696099 7_2:-78329368 Msa1079280:CDS
TTTATAGGGGAACACCGAAG+AGG 0.700966 7_2:-78329217 Msa1079280:CDS
CAATCTGATGCAAACAATGG+TGG 0.722659 7_2:-78329365 Msa1079280:CDS
AACTCAGGAGTACCTGACCG+AGG 0.728041 7_2:+78328819 None:intergenic
TTAGCTGAATAGTCCAAACG+AGG 0.756003 7_2:+78329302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTGGAATATT+AGG + chr7_2:78329210-78329229 None:intergenic 10.0%
!!! GTTAGATTTTACTTATATTT+TGG - chr7_2:78328506-78328525 Msa1079280:intron 15.0%
!!! TTTTAGCAAATTCTAATAAT+AGG + chr7_2:78328695-78328714 None:intergenic 15.0%
!! TTAATGTATATATTTGTGTA+TGG - chr7_2:78328800-78328819 Msa1079280:CDS 15.0%
!! TAGTAATATATGCAATAAAA+AGG + chr7_2:78328917-78328936 None:intergenic 15.0%
!! TCAAGTAAATTAATTCTAGA+GGG + chr7_2:78328429-78328448 None:intergenic 20.0%
!!! GAATGTTTTGAGAATAATAA+CGG - chr7_2:78328466-78328485 Msa1079280:intron 20.0%
!! ATTCAAAGTAAAATATGTGA+AGG + chr7_2:78328762-78328781 None:intergenic 20.0%
!! TATTATTATTAAACGGTTGT+TGG + chr7_2:78329338-78329357 None:intergenic 20.0%
!! GTCGCAATATTATTATTAAA+CGG + chr7_2:78329345-78329364 None:intergenic 20.0%
! AGTTGAAGCAATAAGATATA+TGG - chr7_2:78327483-78327502 Msa1079280:CDS 25.0%
! CTAACTTGGTTAATATTCAT+AGG + chr7_2:78327553-78327572 None:intergenic 25.0%
! CATCATTATCAAAACTAACT+TGG + chr7_2:78327567-78327586 None:intergenic 25.0%
!!! CAAGTTAGTTTTGATAATGA+TGG - chr7_2:78327565-78327584 Msa1079280:CDS 25.0%
! GATAATAAACTTCGAAGAAA+CGG - chr7_2:78328057-78328076 Msa1079280:intron 25.0%
! GTTATTGAAGCAATAAAACT+CGG - chr7_2:78328144-78328163 Msa1079280:intron 25.0%
! CTTGTGAAAACTTCTTTAAT+TGG - chr7_2:78328225-78328244 Msa1079280:intron 25.0%
! CTCAAGTAAATTAATTCTAG+AGG + chr7_2:78328430-78328449 None:intergenic 25.0%
!! TGATTTGTATAAATTCCACA+AGG + chr7_2:78328576-78328595 None:intergenic 25.0%
! AACTTAAAAGGATTATGCTT+TGG + chr7_2:78328645-78328664 None:intergenic 25.0%
!! TTTTCATCAGTACCATAAAT+TGG - chr7_2:78328663-78328682 Msa1079280:CDS 25.0%
! GTATGGTAATATAGATACAA+TGG - chr7_2:78328817-78328836 Msa1079280:CDS 25.0%
! TCTCTTCTTACAATTTCATT+AGG + chr7_2:78328856-78328875 None:intergenic 25.0%
!!! TTTCTGATGTCATACTTTTT+AGG - chr7_2:78328987-78329006 Msa1079280:CDS 25.0%
!!! TCATACTTTTTAGGTTACAT+GGG - chr7_2:78328996-78329015 Msa1079280:CDS 25.0%
!!! TTCACATTTTTAAGTATCTC+AGG + chr7_2:78329027-78329046 None:intergenic 25.0%
! TTGGAATATTAGGATTTAGA+AGG + chr7_2:78329200-78329219 None:intergenic 25.0%
!! GTTTCGGGTAAATAAAAAAT+TGG + chr7_2:78329219-78329238 None:intergenic 25.0%
! AAGATTATGAAAATCTGGTA+AGG + chr7_2:78329289-78329308 None:intergenic 25.0%
! AATGGAAGATTATGAAAATC+TGG + chr7_2:78329294-78329313 None:intergenic 25.0%
!! GATTTTCATAATCTTCCATT+AGG - chr7_2:78329294-78329313 Msa1079280:CDS 25.0%
!!! ATGATTAGTCATTTTCTTCT+CGG + chr7_2:78329547-78329566 None:intergenic 25.0%
AAAACATGTGAGTTAACTTC+TGG + chr7_2:78327376-78327395 None:intergenic 30.0%
! CAACGTGTCTGAAATAATTA+AGG - chr7_2:78327600-78327619 Msa1079280:CDS 30.0%
!!! GTGTTTTTGAGATCTGAAAA+CGG - chr7_2:78327892-78327911 Msa1079280:CDS 30.0%
!! AATGGATTGCTAATAAGTGA+TGG - chr7_2:78328087-78328106 Msa1079280:intron 30.0%
! CTAATAAGTGATGGAATGAT+GGG - chr7_2:78328096-78328115 Msa1079280:intron 30.0%
GGATAATAAACCACATCAAA+CGG + chr7_2:78328183-78328202 None:intergenic 30.0%
TTGATGTGGTTTATTATCCT+CGG - chr7_2:78328184-78328203 Msa1079280:intron 30.0%
!! TCAAGGATAAGTTGGTTTAT+CGG - chr7_2:78328315-78328334 Msa1079280:intron 30.0%
TTGCAAGAATACACATTCTA+TGG + chr7_2:78328610-78328629 None:intergenic 30.0%
!! GGTACTGATGAAAACTTAAA+AGG + chr7_2:78328657-78328676 None:intergenic 30.0%
AATAGGAAGCTTCCAATTTA+TGG + chr7_2:78328678-78328697 None:intergenic 30.0%
! TATGATAGTGATGTAGGTAT+AGG + chr7_2:78328720-78328739 None:intergenic 30.0%
! CTAATGTATGATAGTGATGT+AGG + chr7_2:78328726-78328745 None:intergenic 30.0%
CTACATCACTATCATACATT+AGG - chr7_2:78328724-78328743 Msa1079280:CDS 30.0%
TAGATACAATGGAACATTGT+TGG - chr7_2:78328828-78328847 Msa1079280:CDS 30.0%
TGACATCAGAAAATCATTCA+CGG + chr7_2:78328979-78328998 None:intergenic 30.0%
!!! GTCATACTTTTTAGGTTACA+TGG - chr7_2:78328995-78329014 Msa1079280:CDS 30.0%
TTAGGATTTAGAAGGTTGTT+TGG + chr7_2:78329192-78329211 None:intergenic 30.0%
TTTGCAATGCCAAGTTATTA+GGG + chr7_2:78329383-78329402 None:intergenic 30.0%
! TTTTGCAATGCCAAGTTATT+AGG + chr7_2:78329384-78329403 None:intergenic 30.0%
ACATTAGAGATGAAACATTC+AGG - chr7_2:78329666-78329685 Msa1079280:CDS 30.0%
CAATCCAACTGAGATGAATA+TGG - chr7_2:78327267-78327286 Msa1079280:intron 35.0%
GAAAAATGTGAACAAGAGTG+TGG - chr7_2:78327306-78327325 Msa1079280:intron 35.0%
! TGGAATGAAAGACGGAATTT+TGG + chr7_2:78327458-78327477 None:intergenic 35.0%
ACTCTACATGGAATGAAAGA+CGG + chr7_2:78327466-78327485 None:intergenic 35.0%
CTTATTGCTTCAACTCTACA+TGG + chr7_2:78327478-78327497 None:intergenic 35.0%
! GAGTTTTGCATACACTTCAT+CGG + chr7_2:78327521-78327540 None:intergenic 35.0%
ATGAAGTGTATGCAAAACTC+AGG - chr7_2:78327521-78327540 Msa1079280:CDS 35.0%
!! TTTGATAATGATGGTGTTGC+TGG - chr7_2:78327574-78327593 Msa1079280:CDS 35.0%
ACACAATCTGATGCAAACAA+TGG - chr7_2:78327652-78327671 Msa1079280:CDS 35.0%
GAAAAATATCCTGAAGAGGA+GGG + chr7_2:78327744-78327763 None:intergenic 35.0%
TTGGGAAAAATATCCTGAAG+AGG + chr7_2:78327748-78327767 None:intergenic 35.0%
! TCTTCAGGATATTTTTCCCA+AGG - chr7_2:78327747-78327766 Msa1079280:CDS 35.0%
! ATTTTTCCCAAGGATGTTCA+TGG - chr7_2:78327757-78327776 Msa1079280:CDS 35.0%
GCTAAAAGGCGAAATAATGT+TGG - chr7_2:78327940-78327959 Msa1079280:CDS 35.0%
AAACTTCGAAGAAACGGTAA+AGG - chr7_2:78328063-78328082 Msa1079280:intron 35.0%
! GCTAATAAGTGATGGAATGA+TGG - chr7_2:78328095-78328114 Msa1079280:intron 35.0%
! GAAGTTTTCACAAGAAACTC+AGG + chr7_2:78328219-78328238 None:intergenic 35.0%
TTGTCATATAGCAGCTATAG+TGG - chr7_2:78328535-78328554 Msa1079280:intron 35.0%
GATACTATTTCAACTTGCCA+CGG + chr7_2:78329060-78329079 None:intergenic 35.0%
AATCTCAATTTCTTCCTTGG+CGG + chr7_2:78329117-78329136 None:intergenic 35.0%
GGTAATCTCAATTTCTTCCT+TGG + chr7_2:78329120-78329139 None:intergenic 35.0%
TTGGAAATTGGCCATCAATT+GGG + chr7_2:78329158-78329177 None:intergenic 35.0%
ATTGGAAATTGGCCATCAAT+TGG + chr7_2:78329159-78329178 None:intergenic 35.0%
! GAAAAGTTGGCATTGGAAAT+TGG + chr7_2:78329170-78329189 None:intergenic 35.0%
TTGTTTGGAAAAGTTGGCAT+TGG + chr7_2:78329177-78329196 None:intergenic 35.0%
AGAAGGTTGTTTGGAAAAGT+TGG + chr7_2:78329183-78329202 None:intergenic 35.0%
TTAAACGGTTGTTGGAAACT+AGG + chr7_2:78329330-78329349 None:intergenic 35.0%
AAGTTATTAGGGACAGTCAT+CGG + chr7_2:78329372-78329391 None:intergenic 35.0%
GACTCCATATTCATCTCAGT+TGG + chr7_2:78327274-78327293 None:intergenic 40.0%
! ACATGTTTTCTACTTCCCTC+AGG - chr7_2:78327387-78327406 Msa1079280:CDS 40.0%
! CATGTTTTCTACTTCCCTCA+GGG - chr7_2:78327388-78327407 Msa1079280:CDS 40.0%
!! GAGTAAGCACTGAAATTCAC+CGG + chr7_2:78327436-78327455 None:intergenic 40.0%
GTTTGCATCAGATTGTGTCA+AGG + chr7_2:78327650-78327669 None:intergenic 40.0%
CAATCTGATGCAAACAATGG+TGG - chr7_2:78327655-78327674 Msa1079280:CDS 40.0%
AGCGTTTCTGCACAATATCT+AGG + chr7_2:78327694-78327713 None:intergenic 40.0%
!!! AGAAACGCTTTTTCCTCGTT+TGG - chr7_2:78327705-78327724 Msa1079280:CDS 40.0%
TTAGCTGAATAGTCCAAACG+AGG + chr7_2:78327721-78327740 None:intergenic 40.0%
GGAAAAATATCCTGAAGAGG+AGG + chr7_2:78327745-78327764 None:intergenic 40.0%
! TTTTCGCCATGAACATCCTT+GGG + chr7_2:78327766-78327785 None:intergenic 40.0%
GCATTTCAGGCACGTTTATA+GGG - chr7_2:78327789-78327808 Msa1079280:CDS 40.0%
CATTTCAGGCACGTTTATAG+GGG - chr7_2:78327790-78327809 Msa1079280:CDS 40.0%
GTTGTCAACAAATGCCTCTT+CGG + chr7_2:78327820-78327839 None:intergenic 40.0%
!! AAGAGGCATTTGTTGACAAC+TGG - chr7_2:78327820-78327839 Msa1079280:CDS 40.0%
AGTTTCTTGTCGCTGACAAA+AGG + chr7_2:78327853-78327872 None:intergenic 40.0%
GCGATCTTCATGTTGGAATT+CGG - chr7_2:78327914-78327933 Msa1079280:CDS 40.0%
ATCTTCATGTTGGAATTCGG+AGG - chr7_2:78327917-78327936 Msa1079280:CDS 40.0%
TCTTCATGTTGGAATTCGGA+GGG - chr7_2:78327918-78327937 Msa1079280:CDS 40.0%
TTGGAGTCGATCCTTTGTTA+GGG - chr7_2:78327959-78327978 Msa1079280:CDS 40.0%
!! TGGAAATCTGGTAGTGGAAT+TGG - chr7_2:78327982-78328001 Msa1079280:CDS 40.0%
CGAAGAAACGGTAAAGGTAA+TGG - chr7_2:78328069-78328088 Msa1079280:intron 40.0%
!! TAAGTGATGGAATGATGGGT+AGG - chr7_2:78328100-78328119 Msa1079280:intron 40.0%
!! AAGTGATGGAATGATGGGTA+GGG - chr7_2:78328101-78328120 Msa1079280:intron 40.0%
TAATATGCAGCCGTTTGATG+TGG - chr7_2:78328170-78328189 Msa1079280:intron 40.0%
TTGGAACAGCACTTCAGATT+AGG - chr7_2:78328244-78328263 Msa1079280:intron 40.0%
TGATGAGTCCTCAGTTTCAA+TGG + chr7_2:78328298-78328317 None:intergenic 40.0%
TTGAAACTGAGGACTCATCA+AGG - chr7_2:78328298-78328317 Msa1079280:intron 40.0%
AGGACTCATCAAGGATAAGT+TGG - chr7_2:78328307-78328326 Msa1079280:intron 40.0%
CACATAGAATCAGACCATGA+CGG + chr7_2:78328369-78328388 None:intergenic 40.0%
CACTATATTGCTATGCCTTG+TGG - chr7_2:78328558-78328577 Msa1079280:intron 40.0%
TAAAATATGTGAAGGCCCTC+GGG + chr7_2:78328754-78328773 None:intergenic 40.0%
GTAAAATATGTGAAGGCCCT+CGG + chr7_2:78328755-78328774 None:intergenic 40.0%
ATCATTCACGGCTGAAACAA+AGG + chr7_2:78328967-78328986 None:intergenic 40.0%
ATGTGAAAAGAGTGAATCCG+TGG - chr7_2:78329040-78329059 Msa1079280:CDS 40.0%
GATGACTGTCCCTAATAACT+TGG - chr7_2:78329371-78329390 Msa1079280:CDS 40.0%
GAAATGTTCTCACTGGTGTT+CGG + chr7_2:78329408-78329427 None:intergenic 40.0%
TGCACAATCTTCAGAGAAAC+CGG - chr7_2:78329452-78329471 Msa1079280:CDS 40.0%
! TTTGGCCAAAAAGCACAAGT+TGG + chr7_2:78329494-78329513 None:intergenic 40.0%
!! CAGTGTCGACTTGTATTGTT+TGG + chr7_2:78329512-78329531 None:intergenic 40.0%
CAAACAATACAAGTCGACAC+TGG - chr7_2:78329510-78329529 Msa1079280:CDS 40.0%
GAGACTTCATCAGAAAAGCT+AGG - chr7_2:78329769-78329788 Msa1079280:CDS 40.0%
ACTTCATCAGAAAAGCTAGG+AGG - chr7_2:78329772-78329791 Msa1079280:CDS 40.0%
TCTGATGCAAACAATGGTGG+TGG - chr7_2:78327658-78327677 Msa1079280:CDS 45.0%
! CTTTTCGCCATGAACATCCT+TGG + chr7_2:78327767-78327786 None:intergenic 45.0%
AGGATGTTCATGGCGAAAAG+TGG - chr7_2:78327767-78327786 Msa1079280:CDS 45.0%
ATGGCGAAAAGTGGCATTTC+AGG - chr7_2:78327776-78327795 Msa1079280:CDS 45.0%
GGCATTTCAGGCACGTTTAT+AGG - chr7_2:78327788-78327807 Msa1079280:CDS 45.0%
TTTATAGGGGAACACCGAAG+AGG - chr7_2:78327803-78327822 Msa1079280:CDS 45.0%
! GGCATTTGTTGACAACTGGA+TGG - chr7_2:78327824-78327843 Msa1079280:CDS 45.0%
GAAAACGGCGATCTTCATGT+TGG - chr7_2:78327907-78327926 Msa1079280:CDS 45.0%
TTGGAATTCGGAGGGCTAAA+AGG - chr7_2:78327926-78327945 Msa1079280:CDS 45.0%
GTTGGAGTCGATCCTTTGTT+AGG - chr7_2:78327958-78327977 Msa1079280:CDS 45.0%
CCAGATTTCCACCCTAACAA+AGG + chr7_2:78327973-78327992 None:intergenic 45.0%
CCTTTGTTAGGGTGGAAATC+TGG - chr7_2:78327970-78327989 Msa1079280:CDS 45.0%
TTAGGGTGGAAATCTGGTAG+TGG - chr7_2:78327976-78327995 Msa1079280:CDS 45.0%
ATTTGTCCTGCACCACCTTA+CGG - chr7_2:78328006-78328025 Msa1079280:CDS 45.0%
AACGATGGAAATCCTCCGTA+AGG + chr7_2:78328024-78328043 None:intergenic 45.0%
! CGGAGGATTTCCATCGTTTT+CGG - chr7_2:78328026-78328045 Msa1079280:intron 45.0%
! GGAGGATTTCCATCGTTTTC+GGG - chr7_2:78328027-78328046 Msa1079280:intron 45.0%
!! ATTTCCATCGTTTTCGGGAG+AGG - chr7_2:78328032-78328051 Msa1079280:intron 45.0%
!! AGTGATGGAATGATGGGTAG+GGG - chr7_2:78328102-78328121 Msa1079280:intron 45.0%
GTGGTTTATTATCCTCGGTC+AGG - chr7_2:78328189-78328208 Msa1079280:intron 45.0%
GAACAGCACTTCAGATTAGG+TGG - chr7_2:78328247-78328266 Msa1079280:intron 45.0%
TCCTGGAATGAGGTTCAAGA+TGG - chr7_2:78328272-78328291 Msa1079280:intron 45.0%
CAAGATGGCCATTGAAACTG+AGG - chr7_2:78328287-78328306 Msa1079280:intron 45.0%
CGGAACTATTGCTTCTGTTC+AGG - chr7_2:78328335-78328354 Msa1079280:intron 45.0%
CGTCATGGTCTGATTCTATG+TGG - chr7_2:78328367-78328386 Msa1079280:intron 45.0%
TTCTATGTGGAGACTTCTCG+AGG - chr7_2:78328380-78328399 Msa1079280:intron 45.0%
TCATACATTAGGTATCCCCG+AGG - chr7_2:78328735-78328754 Msa1079280:CDS 45.0%
CATACATTAGGTATCCCCGA+GGG - chr7_2:78328736-78328755 Msa1079280:CDS 45.0%
AAAATATGTGAAGGCCCTCG+GGG + chr7_2:78328753-78328772 None:intergenic 45.0%
TTCTTCCTTGGCGGTATGAA+AGG + chr7_2:78329108-78329127 None:intergenic 45.0%
ATTGGGAAATCTGGGAGTTG+AGG + chr7_2:78329141-78329160 None:intergenic 45.0%
CTCCCAGATTTCCCAATTGA+TGG - chr7_2:78329144-78329163 Msa1079280:CDS 45.0%
GGCCATCAATTGGGAAATCT+GGG + chr7_2:78329149-78329168 None:intergenic 45.0%
TGGCCATCAATTGGGAAATC+TGG + chr7_2:78329150-78329169 None:intergenic 45.0%
CTAGGCTGAAAGAGACCTAA+TGG + chr7_2:78329312-78329331 None:intergenic 45.0%
CGAGCATGAAATGTTCTCAC+TGG + chr7_2:78329415-78329434 None:intergenic 45.0%
!! CCAAAAAGCACAAGTTGGTG+CGG + chr7_2:78329489-78329508 None:intergenic 45.0%
CTCTCATCAGATGTACGTGT+CGG + chr7_2:78329597-78329616 None:intergenic 45.0%
CTGCGAATGTTTCTTCGCAT+TGG + chr7_2:78329641-78329660 None:intergenic 45.0%
CAATGCGAAGAAACATTCGC+AGG - chr7_2:78329639-78329658 Msa1079280:CDS 45.0%
TTGCACCATTCCTCCTGCAA+CGG + chr7_2:78327350-78327369 None:intergenic 50.0%
TTCAGCTAACCCTCCTCTTC+AGG - chr7_2:78327732-78327751 Msa1079280:CDS 50.0%
AGCGACAAGAAACTTGCGTC+TGG - chr7_2:78327859-78327878 Msa1079280:CDS 50.0%
GCGACAAGAAACTTGCGTCT+GGG - chr7_2:78327860-78327879 Msa1079280:CDS 50.0%
CGACAAGAAACTTGCGTCTG+GGG - chr7_2:78327861-78327880 Msa1079280:CDS 50.0%
GAGTCGATCCTTTGTTAGGG+TGG - chr7_2:78327962-78327981 Msa1079280:CDS 50.0%
GATGGAAATCCTCCGTAAGG+TGG + chr7_2:78328021-78328040 None:intergenic 50.0%
TCTTCCTCTCCCGAAAACGA+TGG + chr7_2:78328039-78328058 None:intergenic 50.0%
!! GTGATGGAATGATGGGTAGG+GGG - chr7_2:78328103-78328122 Msa1079280:intron 50.0%
CTTCAGATTAGGTGGTGTCC+TGG - chr7_2:78328255-78328274 Msa1079280:intron 50.0%
TTAGGTGGTGTCCTGGAATG+AGG - chr7_2:78328262-78328281 Msa1079280:intron 50.0%
GCCATCTTGAACCTCATTCC+AGG + chr7_2:78328276-78328295 None:intergenic 50.0%
AAAGGCGAAAGAGGGATCGA+AGG + chr7_2:78329090-78329109 None:intergenic 50.0%
GCGGTATGAAAGGCGAAAGA+GGG + chr7_2:78329098-78329117 None:intergenic 50.0%
TTTCGCCTTTCATACCGCCA+AGG - chr7_2:78329100-78329119 Msa1079280:CDS 50.0%
TTACCCGAAACTAGTCCTGC+CGG - chr7_2:78329228-78329247 Msa1079280:CDS 50.0%
AAGACCGAAATGACCATGCC+TGG + chr7_2:78329265-78329284 None:intergenic 50.0%
! CCGCACCAACTTGTGCTTTT+TGG - chr7_2:78329486-78329505 Msa1079280:CDS 50.0%
CGACACGTACATCTGATGAG+AGG - chr7_2:78329595-78329614 Msa1079280:CDS 50.0%
CATCTGATGAGAGGTTCGAG+TGG - chr7_2:78329604-78329623 Msa1079280:CDS 50.0%
AGAGTGTGGACCCTCAGCTA+TGG - chr7_2:78327320-78327339 Msa1079280:intron 55.0%
CAACGGCATGCCATAGCTGA+GGG + chr7_2:78327333-78327352 None:intergenic 55.0%
!! CACCGGTTCACATGCATGCT+CGG + chr7_2:78327419-78327438 None:intergenic 55.0%
AATCCTCCGTAAGGTGGTGC+AGG + chr7_2:78328015-78328034 None:intergenic 55.0%
!! TGGAATGATGGGTAGGGGGA+AGG - chr7_2:78328107-78328126 Msa1079280:intron 55.0%
!! AACTCAGGAGTACCTGACCG+AGG + chr7_2:78328204-78328223 None:intergenic 55.0%
TTCAGGCTGCTGATCCGTCA+TGG - chr7_2:78328352-78328371 Msa1079280:intron 55.0%
GGCGGTATGAAAGGCGAAAG+AGG + chr7_2:78329099-78329118 None:intergenic 55.0%
!! ATGCCGGCAGGACTAGTTTC+GGG + chr7_2:78329234-78329253 None:intergenic 55.0%
!! CATGCCGGCAGGACTAGTTT+CGG + chr7_2:78329235-78329254 None:intergenic 55.0%
GGAGCCAGGCATGGTCATTT+CGG - chr7_2:78329258-78329277 Msa1079280:CDS 55.0%
TGGTGCGGCTTTGCATGATC+CGG + chr7_2:78329474-78329493 None:intergenic 55.0%
! CATCAGATGTACGTGTCGGC+AGG + chr7_2:78329593-78329612 None:intergenic 55.0%
GCAACGGCATGCCATAGCTG+AGG + chr7_2:78327334-78327353 None:intergenic 60.0%
CAGCTATGGCATGCCGTTGC+AGG - chr7_2:78327334-78327353 Msa1079280:intron 60.0%
CTATGGCATGCCGTTGCAGG+AGG - chr7_2:78327337-78327356 Msa1079280:intron 60.0%
GCATGCCGTTGCAGGAGGAA+TGG - chr7_2:78327342-78327361 Msa1079280:intron 60.0%
CGCCGAGCATGCATGTGAAC+CGG - chr7_2:78327414-78327433 Msa1079280:CDS 60.0%
TGTCCTGCACCACCTTACGG+AGG - chr7_2:78328009-78328028 Msa1079280:CDS 60.0%
AACTAGTCCTGCCGGCATGC+AGG - chr7_2:78329236-78329255 Msa1079280:CDS 60.0%
ACTAGTCCTGCCGGCATGCA+GGG - chr7_2:78329237-78329256 Msa1079280:CDS 60.0%
CATGCTCGGCGTGACCCTGA+GGG + chr7_2:78327405-78327424 None:intergenic 65.0%
ATGCCTGGCTCCCTGCATGC+CGG + chr7_2:78329250-78329269 None:intergenic 65.0%
GCATGCTCGGCGTGACCCTG+AGG + chr7_2:78327406-78327425 None:intergenic 70.0%
GGCATGCAGGGAGCCAGGCA+TGG - chr7_2:78329249-78329268 Msa1079280:CDS 70.0%
CTGGCTCCCTGCATGCCGGC+AGG + chr7_2:78329246-78329265 None:intergenic 75.0%
CTGCCGGCATGCAGGGAGCC+AGG - chr7_2:78329244-78329263 Msa1079280:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78327244 78329798 78327244 ID=Msa1079280;Name=Msa1079280
chr7_2 mRNA 78327244 78329798 78327244 ID=Msa1079280-mRNA-1;Parent=Msa1079280;Name=Msa1079280-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|621
chr7_2 exon 78328641 78329798 78328641 ID=Msa1079280-mRNA-1:exon:19524;Parent=Msa1079280-mRNA-1
chr7_2 exon 78327355 78328033 78327355 ID=Msa1079280-mRNA-1:exon:19523;Parent=Msa1079280-mRNA-1
chr7_2 exon 78327244 78327272 78327244 ID=Msa1079280-mRNA-1:exon:19522;Parent=Msa1079280-mRNA-1
chr7_2 CDS 78328641 78329798 78328641 ID=Msa1079280-mRNA-1:cds;Parent=Msa1079280-mRNA-1
chr7_2 CDS 78327355 78328033 78327355 ID=Msa1079280-mRNA-1:cds;Parent=Msa1079280-mRNA-1
chr7_2 CDS 78327244 78327272 78327244 ID=Msa1079280-mRNA-1:cds;Parent=Msa1079280-mRNA-1
Gene Sequence

>Msa1079280

ATGAAAGAAAAAAGAAAAGGTTGCAATCCAACTGAGATGAATATGGAGTCAAACAAAAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGCTATGGCATGCCGTTGCAGGAGGAATGGTGCAAATGCCAGAAGTTAACTCACATGTTTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATGTGAACCGGTGAATTTCAGTGCTTACTCCAAAATTCCGTCTTTCATTCCATGTAGAGTTGAAGCAATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATAATTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGATATTTTTCCCAAGGATGTTCATGGCGAAAAGTGGCATTTCAGGCACGTTTATAGGGGAACACCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGCGACAAGAAACTTGCGTCTGGGGATTCGATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTTGTTAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAACGGTAAAGGTAATGGATTGCTAATAAGTGATGGAATGATGGGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAATAAAACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCAGGTACTCCTGAGTTTCTTGTGAAAACTTCTTTAATTGGAACAGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTATTGCTTCTGTTCAGGCTGCTGATCCGTCATGGTCTGATTCTATGTGGAGACTTCTCGAGGTTACATGGGATGAACCTGAGATACTTAAAAATGTGAAAAGAGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCGCCTTTCATACCGCCAAGGAAGAAATTGAGATTACCTCAACTCCCAGATTTCCCAATTGATGGCCAATTTCCAATGCCAACTTTTCCAAACAACCTTCTAAATCCTAATATTCCAATTTTTTATTTACCCGAAACTAGTCCTGCCGGCATGCAGGGAGCCAGGCATGGTCATTTCGGTCTTACCTTACCAGATTTTCATAATCTTCCATTAGGTCTCTTTCAGCCTAGTTTCCAACAACCGTTTAATAATAATATTGCGACGATGCCGATGACTGTCCCTAATAACTTGGCATTGCAAAAGCCGAACACCAGTGAGAACATTTCATGCTCGCATTCGATATCAACTTCTGCACAATCTTCAGAGAAACCGGATCATGCAAAGCCGCACCAACTTGTGCTTTTTGGCCAAACAATACAAGTCGACACTGGAAATGAGAATTCCGAGAAGAAAATGACTAATCATTTGTCTGATTTTCATCTACAAAGCCTGCCGACACGTACATCTGATGAGAGGTTCGAGTGGAATGCTAAGAACCAATGCGAAGAAACATTCGCAGGAGAAACATTAGAGATGAAACATTCAGAGACTTCATCAGAAAAGCTAGGAGGTTGA
Protein sequence

>Msa1079280

MKEKRKGCNPTEMNMESNKKLKNVNKSVDPQLWHAVAGGMVQMPEVNSHVFYFPQGHAEHACEPVNFSAYSKIPSFIPCRVEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIIKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPLLGWKSGSGIGICPAPPYGGFPSFSGEEDNKLRRNGKGNGLLISDGMMGRGKVKALEVIEAIKLGTNMQPFDVVYYPRSGTPEFLVKTSLIGTALQIRWCPGMRFKMAIETEDSSRISWFIGTIASVQAADPSWSDSMWRLLEVTWDEPEILKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTFPNNLLNPNIPIFYLPETSPAGMQGARHGHFGLTLPDFHNLPLGLFQPSFQQPFNNNIATMPMTVPNNLALQKPNTSENISCSHSISTSAQSSEKPDHAKPHQLVLFGQTIQVDTGNENSEKKMTNHLSDFHLQSLPTRTSDERFEWNAKNQCEETFAGETLEMKHSETSSEKLGG*