Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080170 | XP_013450098.1 | 90.265 | 226 | 15 | 3 | 1 | 220 | 1 | 225 | 9.64e-136 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080170 | sp|Q9SJR5|GRF3_ARATH | 59.799 | 199 | 56 | 7 | 1 | 184 | 1 | 190 | 5.94e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080170 | A0A072U430 | 90.265 | 226 | 15 | 3 | 1 | 220 | 1 | 225 | 4.60e-136 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1080170 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080170 | MtrunA17_Chr7g0265931 | 90.265 | 226 | 15 | 3 | 1 | 220 | 1 | 225 | 1.34e-139 | 395 |
| Msa1080170 | MtrunA17_Chr4g0021261 | 61.607 | 112 | 40 | 3 | 74 | 184 | 26 | 135 | 1.79e-40 | 141 |
| Msa1080170 | MtrunA17_Chr4g0070591 | 51.034 | 145 | 49 | 5 | 63 | 200 | 6 | 135 | 1.30e-38 | 137 |
| Msa1080170 | MtrunA17_Chr8g0343881 | 58.407 | 113 | 43 | 3 | 72 | 182 | 10 | 120 | 6.00e-37 | 132 |
| Msa1080170 | MtrunA17_Chr5g0409471 | 62.037 | 108 | 29 | 4 | 74 | 181 | 17 | 112 | 1.11e-36 | 130 |
| Msa1080170 | MtrunA17_Chr2g0300511 | 55.556 | 126 | 41 | 4 | 63 | 182 | 4 | 120 | 1.25e-36 | 131 |
| Msa1080170 | MtrunA17_Chr1g0152191 | 56.250 | 112 | 45 | 2 | 74 | 181 | 145 | 256 | 4.38e-34 | 128 |
| Msa1080170 | MtrunA17_Chr3g0127641 | 46.087 | 115 | 36 | 2 | 74 | 184 | 113 | 205 | 1.93e-27 | 108 |
| Msa1080170 | MtrunA17_Chr8g0351521 | 39.333 | 150 | 71 | 4 | 74 | 218 | 55 | 189 | 4.22e-21 | 90.5 |
| Msa1080170 | MtrunA17_Chr8g0351521 | 60.784 | 51 | 20 | 0 | 137 | 187 | 302 | 352 | 6.75e-15 | 72.8 |
| Msa1080170 | MtrunA17_Chr8g0351291 | 58.000 | 50 | 21 | 0 | 137 | 186 | 51 | 100 | 6.13e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080170 | AT2G36400.1 | 59.799 | 199 | 56 | 7 | 1 | 184 | 1 | 190 | 6.04e-65 | 206 |
| Msa1080170 | AT3G52910.1 | 58.209 | 201 | 57 | 8 | 1 | 181 | 1 | 194 | 5.75e-62 | 198 |
| Msa1080170 | AT4G37740.1 | 46.622 | 148 | 68 | 4 | 69 | 211 | 160 | 301 | 1.27e-34 | 129 |
| Msa1080170 | AT3G13960.1 | 54.545 | 110 | 46 | 3 | 74 | 181 | 17 | 124 | 1.88e-31 | 119 |
| Msa1080170 | AT2G22840.1 | 55.556 | 117 | 42 | 4 | 69 | 181 | 129 | 239 | 1.10e-29 | 115 |
| Msa1080170 | AT4G24150.3 | 47.826 | 115 | 56 | 2 | 71 | 181 | 109 | 223 | 2.11e-26 | 105 |
| Msa1080170 | AT4G24150.2 | 47.826 | 115 | 56 | 2 | 71 | 181 | 147 | 261 | 3.59e-26 | 105 |
| Msa1080170 | AT2G06200.1 | 50.427 | 117 | 47 | 4 | 74 | 179 | 7 | 123 | 8.12e-26 | 100 |
| Msa1080170 | AT2G06200.2 | 50.427 | 117 | 47 | 4 | 74 | 179 | 46 | 162 | 1.01e-25 | 101 |
| Msa1080170 | AT5G53660.1 | 47.899 | 119 | 43 | 3 | 74 | 190 | 60 | 161 | 1.43e-25 | 102 |
| Msa1080170 | AT4G24150.1 | 40.714 | 140 | 54 | 3 | 71 | 181 | 147 | 286 | 1.13e-22 | 95.9 |
| Msa1080170 | AT2G45480.2 | 48.039 | 102 | 53 | 0 | 77 | 178 | 28 | 129 | 2.69e-22 | 92.8 |
| Msa1080170 | AT2G45480.3 | 48.039 | 102 | 53 | 0 | 77 | 178 | 28 | 129 | 1.25e-21 | 92.4 |
| Msa1080170 | AT2G45480.3 | 43.617 | 94 | 37 | 3 | 120 | 206 | 286 | 370 | 5.09e-18 | 82.0 |
| Msa1080170 | AT2G45480.1 | 48.039 | 102 | 53 | 0 | 77 | 178 | 26 | 127 | 1.37e-21 | 92.4 |
| Msa1080170 | AT2G45480.1 | 43.617 | 94 | 37 | 3 | 120 | 206 | 284 | 368 | 5.73e-18 | 82.0 |
| Msa1080170 | AT2G06200.3 | 71.111 | 45 | 11 | 1 | 137 | 179 | 7 | 51 | 5.48e-16 | 73.2 |
Find 57 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAAGAACTTGAGTTAC+AGG | 0.267624 | 7_2:+79482753 | Msa1080170:CDS |
| TGAGCAGGGTGAAGAAGTTT+TGG | 0.323925 | 7_2:-79482447 | None:intergenic |
| TGATAATGATGAAGAAAATA+AGG | 0.326826 | 7_2:-79482862 | None:intergenic |
| TTGATAGGTTGAAGAAGTTC+AGG | 0.344449 | 7_2:-79482817 | None:intergenic |
| ATCCAGAGCCAGGTCGTTGC+CGG | 0.359541 | 7_2:+79483139 | Msa1080170:CDS |
| TAGTGTTGCAAAGTGGGTAC+TGG | 0.393066 | 7_2:+79483100 | Msa1080170:intron |
| CTCCGGCAACGACCTGGCTC+TGG | 0.400600 | 7_2:-79483141 | None:intergenic |
| TGTGCGAGGGATGTGGTGGC+TGG | 0.410154 | 7_2:+79483186 | Msa1080170:CDS |
| TGTTGGTGGTGTTGATGAGC+AGG | 0.411541 | 7_2:-79482462 | None:intergenic |
| CAAGTTGGTGACTTTGGTGT+TGG | 0.425449 | 7_2:-79482517 | None:intergenic |
| ATCTGACAAGTTGGTGACTT+TGG | 0.426402 | 7_2:-79482523 | None:intergenic |
| GCCACTGAGATAAGCTGAAA+TGG | 0.433868 | 7_2:-79482735 | None:intergenic |
| GTGACTTTGGTGTTGGGTTG+AGG | 0.434579 | 7_2:-79482510 | None:intergenic |
| GAGATAGTGCAGTGAAGTGC+AGG | 0.446015 | 7_2:-79482350 | None:intergenic |
| GGAGCAATGGATCCAGAGCC+AGG | 0.451345 | 7_2:+79483129 | Msa1080170:CDS |
| CTTACTGGGAAATCTGTTGT+TGG | 0.455528 | 7_2:-79482559 | None:intergenic |
| GTTTCTCTGACTCATGCTGT+TGG | 0.459512 | 7_2:-79482407 | None:intergenic |
| AAGTTGGTGACTTTGGTGTT+GGG | 0.464829 | 7_2:-79482516 | None:intergenic |
| TACATTATTAGGAATGGGAA+TGG | 0.465443 | 7_2:+79482708 | Msa1080170:intron |
| CAAAGTGGGTACTGGGGAAG+AGG | 0.492409 | 7_2:+79483108 | Msa1080170:CDS |
| GTGGCGGTGTGCGAGGGATG+TGG | 0.497767 | 7_2:+79483179 | Msa1080170:CDS |
| AGTGTTGCAAAGTGGGTACT+GGG | 0.501618 | 7_2:+79483101 | Msa1080170:intron |
| GTTGGTGTGGGAAGTTCCAC+AGG | 0.502197 | 7_2:-79483261 | None:intergenic |
| TGATTAAAGTGAAGATCAAA+AGG | 0.508625 | 7_2:-79483360 | None:intergenic |
| GTTCCACAGGCTTTCTTGAA+CGG | 0.512655 | 7_2:-79483248 | None:intergenic |
| TGAAGTGCAGGTATTAAGAT+TGG | 0.513205 | 7_2:-79482338 | None:intergenic |
| TCTGTTCTCCGGCAACGACC+TGG | 0.516750 | 7_2:-79483147 | None:intergenic |
| ACATTATTAGGAATGGGAAT+GGG | 0.520045 | 7_2:+79482709 | Msa1080170:intron |
| TTTGATATTTAGATACATGT+TGG | 0.524543 | 7_2:+79482777 | Msa1080170:CDS |
| TTGTTTCGTATGAAAGTCCA+TGG | 0.526188 | 7_2:-79482376 | None:intergenic |
| TTGATCTTCACTTTAATCAA+CGG | 0.532715 | 7_2:+79483364 | Msa1080170:CDS |
| AAGGAAGTGCAGGTGATTGT+TGG | 0.537153 | 7_2:-79482479 | None:intergenic |
| CTTCCCACACCAACTAGTAA+TGG | 0.551902 | 7_2:+79483270 | Msa1080170:CDS |
| ATCAAAAGGAGATTTGAATG+AGG | 0.554725 | 7_2:-79483346 | None:intergenic |
| GTTGGTGGTGTTGATGAGCA+GGG | 0.556192 | 7_2:-79482461 | None:intergenic |
| ACCGCCATTACTAGTTGGTG+TGG | 0.561256 | 7_2:-79483274 | None:intergenic |
| ATATTTAGATACATGTTGGT+TGG | 0.568638 | 7_2:+79482781 | Msa1080170:CDS |
| CACTGCACTATCTCTCTCCA+TGG | 0.572642 | 7_2:+79482359 | Msa1080170:exon |
| AAAAGGAGATTTGAATGAGG+AGG | 0.578590 | 7_2:-79483343 | None:intergenic |
| TAATGCTGAATCTGACAAGT+TGG | 0.579106 | 7_2:-79482532 | None:intergenic |
| GTACTGGGGAAGAGGAGCAA+TGG | 0.581936 | 7_2:+79483116 | Msa1080170:CDS |
| GATCCACCGCCATTACTAGT+TGG | 0.583483 | 7_2:-79483279 | None:intergenic |
| GGTACAAACAAAGGAAGTGC+AGG | 0.589399 | 7_2:-79482489 | None:intergenic |
| GAAGTGCAGGTGATTGTTGG+TGG | 0.603904 | 7_2:-79482476 | None:intergenic |
| GCCATTTCAGCTTATCTCAG+TGG | 0.605314 | 7_2:+79482734 | Msa1080170:CDS |
| ACACCAACTAGTAATGGCGG+TGG | 0.613692 | 7_2:+79483276 | Msa1080170:CDS |
| GGTCGTTGCCGGAGAACAGA+CGG | 0.624707 | 7_2:+79483150 | Msa1080170:CDS |
| TGGACTTTCATACGAAACAA+TGG | 0.628358 | 7_2:+79482379 | Msa1080170:CDS |
| CCGCCATTACTAGTTGGTGT+GGG | 0.647594 | 7_2:-79483273 | None:intergenic |
| TTGGGTTGAGGTACAAACAA+AGG | 0.648493 | 7_2:-79482498 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.653157 | 7_2:+79483245 | Msa1080170:CDS |
| ATAGGTTGAAGAAGTTCAGG+AGG | 0.653453 | 7_2:-79482814 | None:intergenic |
| GAATGAAACTTACATGCTGT+AGG | 0.658238 | 7_2:-79482886 | None:intergenic |
| CCCACACCAACTAGTAATGG+CGG | 0.678913 | 7_2:+79483273 | Msa1080170:CDS |
| AATGAGGAGGAAGTAACAAG+AGG | 0.678921 | 7_2:-79483330 | None:intergenic |
| GTGTTGCAAAGTGGGTACTG+GGG | 0.700679 | 7_2:+79483102 | Msa1080170:intron |
| TGTGAAAGACACATGCATCG+TGG | 0.747726 | 7_2:+79483219 | Msa1080170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAAGTTCTTACATTATT+AGG | + | chr7_2:79482697-79482716 | Msa1080170:intron | 20.0% |
| !! | TTTGATATTTAGATACATGT+TGG | + | chr7_2:79482777-79482796 | Msa1080170:CDS | 20.0% |
| !!! | TGATAATGATGAAGAAAATA+AGG | - | chr7_2:79482865-79482884 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAATGTTACTG+GGG | - | chr7_2:79483016-79483035 | None:intergenic | 20.0% |
| !! | CAAGTAAAAATAATGTTACT+GGG | - | chr7_2:79483017-79483036 | None:intergenic | 20.0% |
| !! | TAACAAGTTCTTACATTATT+AGG | + | chr7_2:79482697-79482716 | Msa1080170:intron | 20.0% |
| !! | TTTGATATTTAGATACATGT+TGG | + | chr7_2:79482777-79482796 | Msa1080170:CDS | 20.0% |
| !!! | TGATAATGATGAAGAAAATA+AGG | - | chr7_2:79482865-79482884 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAATGTTACTG+GGG | - | chr7_2:79483016-79483035 | None:intergenic | 20.0% |
| !! | CAAGTAAAAATAATGTTACT+GGG | - | chr7_2:79483017-79483036 | None:intergenic | 20.0% |
| ! | CTAACTCAAAATAACTTACT+GGG | - | chr7_2:79482576-79482595 | None:intergenic | 25.0% |
| ! | AGTTCTTACATTATTAGGAA+TGG | + | chr7_2:79482702-79482721 | Msa1080170:intron | 25.0% |
| ! | GTTCTTACATTATTAGGAAT+GGG | + | chr7_2:79482703-79482722 | Msa1080170:intron | 25.0% |
| ! | ATATTTAGATACATGTTGGT+TGG | + | chr7_2:79482781-79482800 | Msa1080170:CDS | 25.0% |
| !!! | TGTGTTTTTTGGTTTTGTTT+TGG | - | chr7_2:79482949-79482968 | None:intergenic | 25.0% |
| !!! | AGAAAAGAAAGTGTGTTTTT+TGG | - | chr7_2:79482960-79482979 | None:intergenic | 25.0% |
| ! | AGTAAAAATAATGTTACTGG+GGG | - | chr7_2:79483015-79483034 | None:intergenic | 25.0% |
| ! | CCAAGTAAAAATAATGTTAC+TGG | - | chr7_2:79483018-79483037 | None:intergenic | 25.0% |
| !!! | CCAGTAACATTATTTTTACT+TGG | + | chr7_2:79483015-79483034 | Msa1080170:intron | 25.0% |
| !! | TTTTTATTAGTGTTGCAAAG+TGG | + | chr7_2:79483093-79483112 | Msa1080170:intron | 25.0% |
| !! | TTTTATTAGTGTTGCAAAGT+GGG | + | chr7_2:79483094-79483113 | Msa1080170:intron | 25.0% |
| ! | TGATTAAAGTGAAGATCAAA+AGG | - | chr7_2:79483363-79483382 | None:intergenic | 25.0% |
| ! | TTGATCTTCACTTTAATCAA+CGG | + | chr7_2:79483364-79483383 | Msa1080170:CDS | 25.0% |
| ! | CTAACTCAAAATAACTTACT+GGG | - | chr7_2:79482576-79482595 | None:intergenic | 25.0% |
| ! | AGTTCTTACATTATTAGGAA+TGG | + | chr7_2:79482702-79482721 | Msa1080170:intron | 25.0% |
| ! | GTTCTTACATTATTAGGAAT+GGG | + | chr7_2:79482703-79482722 | Msa1080170:intron | 25.0% |
| ! | ATATTTAGATACATGTTGGT+TGG | + | chr7_2:79482781-79482800 | Msa1080170:CDS | 25.0% |
| !!! | TGTGTTTTTTGGTTTTGTTT+TGG | - | chr7_2:79482949-79482968 | None:intergenic | 25.0% |
| !!! | AGAAAAGAAAGTGTGTTTTT+TGG | - | chr7_2:79482960-79482979 | None:intergenic | 25.0% |
| ! | AGTAAAAATAATGTTACTGG+GGG | - | chr7_2:79483015-79483034 | None:intergenic | 25.0% |
| ! | CCAAGTAAAAATAATGTTAC+TGG | - | chr7_2:79483018-79483037 | None:intergenic | 25.0% |
| !!! | CCAGTAACATTATTTTTACT+TGG | + | chr7_2:79483015-79483034 | Msa1080170:intron | 25.0% |
| !! | TTTTTATTAGTGTTGCAAAG+TGG | + | chr7_2:79483093-79483112 | Msa1080170:intron | 25.0% |
| !! | TTTTATTAGTGTTGCAAAGT+GGG | + | chr7_2:79483094-79483113 | Msa1080170:intron | 25.0% |
| ! | TGATTAAAGTGAAGATCAAA+AGG | - | chr7_2:79483363-79483382 | None:intergenic | 25.0% |
| ! | TTGATCTTCACTTTAATCAA+CGG | + | chr7_2:79483364-79483383 | Msa1080170:CDS | 25.0% |
| GCTAACTCAAAATAACTTAC+TGG | - | chr7_2:79482577-79482596 | None:intergenic | 30.0% | |
| ! | CTACTACATCTTTCTTCTTT+TGG | + | chr7_2:79482663-79482682 | Msa1080170:intron | 30.0% |
| !! | GTAAGAACTTGTTAAAGTGT+TGG | - | chr7_2:79482691-79482710 | None:intergenic | 30.0% |
| TACATTATTAGGAATGGGAA+TGG | + | chr7_2:79482708-79482727 | Msa1080170:intron | 30.0% | |
| ACATTATTAGGAATGGGAAT+GGG | + | chr7_2:79482709-79482728 | Msa1080170:intron | 30.0% | |
| ! | TGAAGAAGACTTTTCTTGAT+AGG | - | chr7_2:79482835-79482854 | None:intergenic | 30.0% |
| CATGTAAGTTTCATTCTACT+TGG | + | chr7_2:79482893-79482912 | Msa1080170:intron | 30.0% | |
| ATTCTACTTGGTTTCTTACA+CGG | + | chr7_2:79482905-79482924 | Msa1080170:intron | 30.0% | |
| !!! | TTGTTTTGGAGTATGTGATA+TGG | - | chr7_2:79482935-79482954 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTCTTCGTGTTT+TGG | + | chr7_2:79482968-79482987 | Msa1080170:intron | 30.0% |
| ! | CTTTCTTTTCTTCGTGTTTT+GGG | + | chr7_2:79482969-79482988 | Msa1080170:intron | 30.0% |
| ATCAAAAGGAGATTTGAATG+AGG | - | chr7_2:79483349-79483368 | None:intergenic | 30.0% | |
| GCTAACTCAAAATAACTTAC+TGG | - | chr7_2:79482577-79482596 | None:intergenic | 30.0% | |
| ! | CTACTACATCTTTCTTCTTT+TGG | + | chr7_2:79482663-79482682 | Msa1080170:intron | 30.0% |
| !! | GTAAGAACTTGTTAAAGTGT+TGG | - | chr7_2:79482691-79482710 | None:intergenic | 30.0% |
| TACATTATTAGGAATGGGAA+TGG | + | chr7_2:79482708-79482727 | Msa1080170:intron | 30.0% | |
| ACATTATTAGGAATGGGAAT+GGG | + | chr7_2:79482709-79482728 | Msa1080170:intron | 30.0% | |
| ! | TGAAGAAGACTTTTCTTGAT+AGG | - | chr7_2:79482835-79482854 | None:intergenic | 30.0% |
| CATGTAAGTTTCATTCTACT+TGG | + | chr7_2:79482893-79482912 | Msa1080170:intron | 30.0% | |
| ATTCTACTTGGTTTCTTACA+CGG | + | chr7_2:79482905-79482924 | Msa1080170:intron | 30.0% | |
| !!! | TTGTTTTGGAGTATGTGATA+TGG | - | chr7_2:79482935-79482954 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTCTTCGTGTTT+TGG | + | chr7_2:79482968-79482987 | Msa1080170:intron | 30.0% |
| ! | CTTTCTTTTCTTCGTGTTTT+GGG | + | chr7_2:79482969-79482988 | Msa1080170:intron | 30.0% |
| ATCAAAAGGAGATTTGAATG+AGG | - | chr7_2:79483349-79483368 | None:intergenic | 30.0% | |
| TGAAGTGCAGGTATTAAGAT+TGG | - | chr7_2:79482341-79482360 | None:intergenic | 35.0% | |
| TTGTTTCGTATGAAAGTCCA+TGG | - | chr7_2:79482379-79482398 | None:intergenic | 35.0% | |
| TGGACTTTCATACGAAACAA+TGG | + | chr7_2:79482379-79482398 | Msa1080170:CDS | 35.0% | |
| !! | AAGAAGTTTTGGCATCTTTG+TGG | - | chr7_2:79482439-79482458 | None:intergenic | 35.0% |
| TAATGCTGAATCTGACAAGT+TGG | - | chr7_2:79482535-79482554 | None:intergenic | 35.0% | |
| ! | TTGATAGGTTGAAGAAGTTC+AGG | - | chr7_2:79482820-79482839 | None:intergenic | 35.0% |
| GAATGAAACTTACATGCTGT+AGG | - | chr7_2:79482889-79482908 | None:intergenic | 35.0% | |
| AAAAGGAGATTTGAATGAGG+AGG | - | chr7_2:79483346-79483365 | None:intergenic | 35.0% | |
| CTTCACTTTAATCAACGGTA+AGG | + | chr7_2:79483369-79483388 | Msa1080170:CDS | 35.0% | |
| TGAAGTGCAGGTATTAAGAT+TGG | - | chr7_2:79482341-79482360 | None:intergenic | 35.0% | |
| TTGTTTCGTATGAAAGTCCA+TGG | - | chr7_2:79482379-79482398 | None:intergenic | 35.0% | |
| TGGACTTTCATACGAAACAA+TGG | + | chr7_2:79482379-79482398 | Msa1080170:CDS | 35.0% | |
| !! | AAGAAGTTTTGGCATCTTTG+TGG | - | chr7_2:79482439-79482458 | None:intergenic | 35.0% |
| TAATGCTGAATCTGACAAGT+TGG | - | chr7_2:79482535-79482554 | None:intergenic | 35.0% | |
| ! | TTGATAGGTTGAAGAAGTTC+AGG | - | chr7_2:79482820-79482839 | None:intergenic | 35.0% |
| GAATGAAACTTACATGCTGT+AGG | - | chr7_2:79482889-79482908 | None:intergenic | 35.0% | |
| AAAAGGAGATTTGAATGAGG+AGG | - | chr7_2:79483346-79483365 | None:intergenic | 35.0% | |
| !! | TTGGGTTGAGGTACAAACAA+AGG | - | chr7_2:79482501-79482520 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACTTTGGTGTT+GGG | - | chr7_2:79482519-79482538 | None:intergenic | 40.0% |
| !! | ATCTGACAAGTTGGTGACTT+TGG | - | chr7_2:79482526-79482545 | None:intergenic | 40.0% |
| CTTACTGGGAAATCTGTTGT+TGG | - | chr7_2:79482562-79482581 | None:intergenic | 40.0% | |
| ! | ATAGGTTGAAGAAGTTCAGG+AGG | - | chr7_2:79482817-79482836 | None:intergenic | 40.0% |
| ! | ACTTTTTACCGTCTGTTCTC+CGG | - | chr7_2:79483161-79483180 | None:intergenic | 40.0% |
| AATGAGGAGGAAGTAACAAG+AGG | - | chr7_2:79483333-79483352 | None:intergenic | 40.0% | |
| !! | TTGGGTTGAGGTACAAACAA+AGG | - | chr7_2:79482501-79482520 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACTTTGGTGTT+GGG | - | chr7_2:79482519-79482538 | None:intergenic | 40.0% |
| !! | ATCTGACAAGTTGGTGACTT+TGG | - | chr7_2:79482526-79482545 | None:intergenic | 40.0% |
| CTTACTGGGAAATCTGTTGT+TGG | - | chr7_2:79482562-79482581 | None:intergenic | 40.0% | |
| ! | ATAGGTTGAAGAAGTTCAGG+AGG | - | chr7_2:79482817-79482836 | None:intergenic | 40.0% |
| ! | ACTTTTTACCGTCTGTTCTC+CGG | - | chr7_2:79483161-79483180 | None:intergenic | 40.0% |
| AATGAGGAGGAAGTAACAAG+AGG | - | chr7_2:79483333-79483352 | None:intergenic | 40.0% | |
| GTTTCTCTGACTCATGCTGT+TGG | - | chr7_2:79482410-79482429 | None:intergenic | 45.0% | |
| ! | TGAGCAGGGTGAAGAAGTTT+TGG | - | chr7_2:79482450-79482469 | None:intergenic | 45.0% |
| ! | AAGGAAGTGCAGGTGATTGT+TGG | - | chr7_2:79482482-79482501 | None:intergenic | 45.0% |
| ! | GGTACAAACAAAGGAAGTGC+AGG | - | chr7_2:79482492-79482511 | None:intergenic | 45.0% |
| !! | CAAGTTGGTGACTTTGGTGT+TGG | - | chr7_2:79482520-79482539 | None:intergenic | 45.0% |
| GCCATTTCAGCTTATCTCAG+TGG | + | chr7_2:79482734-79482753 | Msa1080170:CDS | 45.0% | |
| GCCACTGAGATAAGCTGAAA+TGG | - | chr7_2:79482738-79482757 | None:intergenic | 45.0% | |
| GTGGCAAGAACTTGAGTTAC+AGG | + | chr7_2:79482753-79482772 | Msa1080170:CDS | 45.0% | |
| TAGTGTTGCAAAGTGGGTAC+TGG | + | chr7_2:79483100-79483119 | Msa1080170:intron | 45.0% | |
| AGTGTTGCAAAGTGGGTACT+GGG | + | chr7_2:79483101-79483120 | Msa1080170:intron | 45.0% | |
| GGAGAACAGACGGTAAAAAG+TGG | + | chr7_2:79483160-79483179 | Msa1080170:CDS | 45.0% | |
| GAACAGACGGTAAAAAGTGG+CGG | + | chr7_2:79483163-79483182 | Msa1080170:CDS | 45.0% | |
| TGTGAAAGACACATGCATCG+TGG | + | chr7_2:79483219-79483238 | Msa1080170:CDS | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | + | chr7_2:79483245-79483264 | Msa1080170:CDS | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr7_2:79483251-79483270 | None:intergenic | 45.0% | |
| CTTCCCACACCAACTAGTAA+TGG | + | chr7_2:79483270-79483289 | Msa1080170:CDS | 45.0% | |
| GTTTCTCTGACTCATGCTGT+TGG | - | chr7_2:79482410-79482429 | None:intergenic | 45.0% | |
| ! | TGAGCAGGGTGAAGAAGTTT+TGG | - | chr7_2:79482450-79482469 | None:intergenic | 45.0% |
| ! | AAGGAAGTGCAGGTGATTGT+TGG | - | chr7_2:79482482-79482501 | None:intergenic | 45.0% |
| ! | GGTACAAACAAAGGAAGTGC+AGG | - | chr7_2:79482492-79482511 | None:intergenic | 45.0% |
| !! | CAAGTTGGTGACTTTGGTGT+TGG | - | chr7_2:79482520-79482539 | None:intergenic | 45.0% |
| GCCATTTCAGCTTATCTCAG+TGG | + | chr7_2:79482734-79482753 | Msa1080170:CDS | 45.0% | |
| GCCACTGAGATAAGCTGAAA+TGG | - | chr7_2:79482738-79482757 | None:intergenic | 45.0% | |
| GTGGCAAGAACTTGAGTTAC+AGG | + | chr7_2:79482753-79482772 | Msa1080170:CDS | 45.0% | |
| TAGTGTTGCAAAGTGGGTAC+TGG | + | chr7_2:79483100-79483119 | Msa1080170:intron | 45.0% | |
| AGTGTTGCAAAGTGGGTACT+GGG | + | chr7_2:79483101-79483120 | Msa1080170:intron | 45.0% | |
| GGAGAACAGACGGTAAAAAG+TGG | + | chr7_2:79483160-79483179 | Msa1080170:CDS | 45.0% | |
| GAACAGACGGTAAAAAGTGG+CGG | + | chr7_2:79483163-79483182 | Msa1080170:CDS | 45.0% | |
| TGTGAAAGACACATGCATCG+TGG | + | chr7_2:79483219-79483238 | Msa1080170:CDS | 45.0% | |
| AAACCGTTCAAGAAAGCCTG+TGG | + | chr7_2:79483245-79483264 | Msa1080170:CDS | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr7_2:79483251-79483270 | None:intergenic | 45.0% | |
| CTTCCCACACCAACTAGTAA+TGG | + | chr7_2:79483270-79483289 | Msa1080170:CDS | 45.0% | |
| GAGATAGTGCAGTGAAGTGC+AGG | - | chr7_2:79482353-79482372 | None:intergenic | 50.0% | |
| CACTGCACTATCTCTCTCCA+TGG | + | chr7_2:79482359-79482378 | Msa1080170:exon | 50.0% | |
| !! | GTTGGTGGTGTTGATGAGCA+GGG | - | chr7_2:79482464-79482483 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGTTGATGAGC+AGG | - | chr7_2:79482465-79482484 | None:intergenic | 50.0% |
| GAAGTGCAGGTGATTGTTGG+TGG | - | chr7_2:79482479-79482498 | None:intergenic | 50.0% | |
| !! | GTGACTTTGGTGTTGGGTTG+AGG | - | chr7_2:79482513-79482532 | None:intergenic | 50.0% |
| ! | GTGTTGCAAAGTGGGTACTG+GGG | + | chr7_2:79483102-79483121 | Msa1080170:intron | 50.0% |
| TAAAAAGTGGCGGTGTGCGA+GGG | + | chr7_2:79483173-79483192 | Msa1080170:CDS | 50.0% | |
| ! | CCGCCATTACTAGTTGGTGT+GGG | - | chr7_2:79483276-79483295 | None:intergenic | 50.0% |
| CCCACACCAACTAGTAATGG+CGG | + | chr7_2:79483273-79483292 | Msa1080170:CDS | 50.0% | |
| ! | ACCGCCATTACTAGTTGGTG+TGG | - | chr7_2:79483277-79483296 | None:intergenic | 50.0% |
| ACACCAACTAGTAATGGCGG+TGG | + | chr7_2:79483276-79483295 | Msa1080170:CDS | 50.0% | |
| GATCCACCGCCATTACTAGT+TGG | - | chr7_2:79483282-79483301 | None:intergenic | 50.0% | |
| GAGATAGTGCAGTGAAGTGC+AGG | - | chr7_2:79482353-79482372 | None:intergenic | 50.0% | |
| CACTGCACTATCTCTCTCCA+TGG | + | chr7_2:79482359-79482378 | Msa1080170:exon | 50.0% | |
| !! | GTTGGTGGTGTTGATGAGCA+GGG | - | chr7_2:79482464-79482483 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGTTGATGAGC+AGG | - | chr7_2:79482465-79482484 | None:intergenic | 50.0% |
| GAAGTGCAGGTGATTGTTGG+TGG | - | chr7_2:79482479-79482498 | None:intergenic | 50.0% | |
| !! | GTGACTTTGGTGTTGGGTTG+AGG | - | chr7_2:79482513-79482532 | None:intergenic | 50.0% |
| ! | GTGTTGCAAAGTGGGTACTG+GGG | + | chr7_2:79483102-79483121 | Msa1080170:intron | 50.0% |
| TAAAAAGTGGCGGTGTGCGA+GGG | + | chr7_2:79483173-79483192 | Msa1080170:CDS | 50.0% | |
| ! | CCGCCATTACTAGTTGGTGT+GGG | - | chr7_2:79483276-79483295 | None:intergenic | 50.0% |
| CCCACACCAACTAGTAATGG+CGG | + | chr7_2:79483273-79483292 | Msa1080170:CDS | 50.0% | |
| ! | ACCGCCATTACTAGTTGGTG+TGG | - | chr7_2:79483277-79483296 | None:intergenic | 50.0% |
| ACACCAACTAGTAATGGCGG+TGG | + | chr7_2:79483276-79483295 | Msa1080170:CDS | 50.0% | |
| GATCCACCGCCATTACTAGT+TGG | - | chr7_2:79483282-79483301 | None:intergenic | 50.0% | |
| !! | CAAAGTGGGTACTGGGGAAG+AGG | + | chr7_2:79483108-79483127 | Msa1080170:CDS | 55.0% |
| GTACTGGGGAAGAGGAGCAA+TGG | + | chr7_2:79483116-79483135 | Msa1080170:CDS | 55.0% | |
| GTAAAAAGTGGCGGTGTGCG+AGG | + | chr7_2:79483172-79483191 | Msa1080170:CDS | 55.0% | |
| GTTGGTGTGGGAAGTTCCAC+AGG | - | chr7_2:79483264-79483283 | None:intergenic | 55.0% | |
| !! | CAAAGTGGGTACTGGGGAAG+AGG | + | chr7_2:79483108-79483127 | Msa1080170:CDS | 55.0% |
| GTACTGGGGAAGAGGAGCAA+TGG | + | chr7_2:79483116-79483135 | Msa1080170:CDS | 55.0% | |
| GTAAAAAGTGGCGGTGTGCG+AGG | + | chr7_2:79483172-79483191 | Msa1080170:CDS | 55.0% | |
| GTTGGTGTGGGAAGTTCCAC+AGG | - | chr7_2:79483264-79483283 | None:intergenic | 55.0% | |
| GGAGCAATGGATCCAGAGCC+AGG | + | chr7_2:79483129-79483148 | Msa1080170:CDS | 60.0% | |
| ATCCAGAGCCAGGTCGTTGC+CGG | + | chr7_2:79483139-79483158 | Msa1080170:CDS | 60.0% | |
| TCTGTTCTCCGGCAACGACC+TGG | - | chr7_2:79483150-79483169 | None:intergenic | 60.0% | |
| GGTCGTTGCCGGAGAACAGA+CGG | + | chr7_2:79483150-79483169 | Msa1080170:CDS | 60.0% | |
| GGAGCAATGGATCCAGAGCC+AGG | + | chr7_2:79483129-79483148 | Msa1080170:CDS | 60.0% | |
| ATCCAGAGCCAGGTCGTTGC+CGG | + | chr7_2:79483139-79483158 | Msa1080170:CDS | 60.0% | |
| TCTGTTCTCCGGCAACGACC+TGG | - | chr7_2:79483150-79483169 | None:intergenic | 60.0% | |
| GGTCGTTGCCGGAGAACAGA+CGG | + | chr7_2:79483150-79483169 | Msa1080170:CDS | 60.0% | |
| TGTGCGAGGGATGTGGTGGC+TGG | + | chr7_2:79483186-79483205 | Msa1080170:CDS | 65.0% | |
| TGTGCGAGGGATGTGGTGGC+TGG | + | chr7_2:79483186-79483205 | Msa1080170:CDS | 65.0% | |
| CTCCGGCAACGACCTGGCTC+TGG | - | chr7_2:79483144-79483163 | None:intergenic | 70.0% | |
| GTGGCGGTGTGCGAGGGATG+TGG | + | chr7_2:79483179-79483198 | Msa1080170:CDS | 70.0% | |
| GCGGTGTGCGAGGGATGTGG+TGG | + | chr7_2:79483182-79483201 | Msa1080170:CDS | 70.0% | |
| CTCCGGCAACGACCTGGCTC+TGG | - | chr7_2:79483144-79483163 | None:intergenic | 70.0% | |
| GTGGCGGTGTGCGAGGGATG+TGG | + | chr7_2:79483179-79483198 | Msa1080170:CDS | 70.0% | |
| GCGGTGTGCGAGGGATGTGG+TGG | + | chr7_2:79483182-79483201 | Msa1080170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 79482305 | 79483389 | 79482305 | ID=Msa1080170;Name=Msa1080170 |
| chr7_2 | mRNA | 79482305 | 79483389 | 79482305 | ID=Msa1080170-mRNA-1;Parent=Msa1080170;Name=Msa1080170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|0.66|1|1|1|3|0|220 |
| chr7_2 | exon | 79482305 | 79482576 | 79482305 | ID=Msa1080170-mRNA-1:exon:19984;Parent=Msa1080170-mRNA-1 |
| chr7_2 | exon | 79482719 | 79482895 | 79482719 | ID=Msa1080170-mRNA-1:exon:19985;Parent=Msa1080170-mRNA-1 |
| chr7_2 | exon | 79483103 | 79483389 | 79483103 | ID=Msa1080170-mRNA-1:exon:19986;Parent=Msa1080170-mRNA-1 |
| chr7_2 | five_prime_UTR | 79482305 | 79482377 | 79482305 | ID=Msa1080170-mRNA-1:five_prime_utr;Parent=Msa1080170-mRNA-1 |
| chr7_2 | CDS | 79482378 | 79482576 | 79482378 | ID=Msa1080170-mRNA-1:cds;Parent=Msa1080170-mRNA-1 |
| chr7_2 | CDS | 79482719 | 79482895 | 79482719 | ID=Msa1080170-mRNA-1:cds;Parent=Msa1080170-mRNA-1 |
| chr7_2 | CDS | 79483103 | 79483389 | 79483103 | ID=Msa1080170-mRNA-1:cds;Parent=Msa1080170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
