AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1082450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082450 MtrunA17_Chr7g0270051 92.058 277 9 2 1 276 1 265 0.0 513
Msa1082450 MtrunA17_Chr8g0379461 60.204 98 36 2 25 119 45 142 7.94e-36 128
Msa1082450 MtrunA17_Chr7g0248691 50.000 148 53 6 24 162 134 269 1.18e-34 127
Msa1082450 MtrunA17_Chr2g0293481 45.963 161 74 5 4 159 216 368 1.41e-34 130
Msa1082450 MtrunA17_Chr2g0284321 51.613 124 55 3 24 145 9 129 3.63e-34 123
Msa1082450 MtrunA17_Chr2g0319961 53.600 125 48 5 2 121 31 150 1.37e-32 120
Msa1082450 MtrunA17_Chr8g0348311 48.485 132 51 4 8 136 122 239 1.47e-32 122
Msa1082450 MtrunA17_Chr1g0202461 61.333 75 29 0 40 114 248 322 4.49e-29 114
Msa1082450 MtrunA17_Chr8g0387501 65.152 66 23 0 49 114 125 190 5.37e-28 108
Msa1082450 MtrunA17_Chr5g0401821 54.945 91 37 1 20 110 170 256 1.14e-27 107
Msa1082450 MtrunA17_Chr4g0053281 55.814 86 34 1 25 110 242 323 3.09e-26 105
Msa1082450 MtrunA17_Chr1g0147881 51.136 88 38 1 23 110 237 319 8.84e-26 103
Msa1082450 MtrunA17_Chr4g0071521 55.056 89 36 2 22 110 218 302 2.10e-25 102
Msa1082450 MtrunA17_Chr1g0184691 60.000 60 24 0 51 110 291 350 5.66e-22 94.0
Msa1082450 MtrunA17_Chr2g0289181 50.685 73 36 0 43 115 4 76 1.42e-21 90.5
Msa1082450 MtrunA17_Chr7g0228941 40.404 99 49 2 13 110 20 109 3.33e-21 86.7
Msa1082450 MtrunA17_Chr3g0139021 43.023 86 40 1 25 110 295 371 7.50e-20 88.2
Msa1082450 MtrunA17_Chr7g0270831 52.632 76 33 1 51 123 214 289 9.25e-20 88.2
Msa1082450 MtrunA17_Chr4g0051881 60.317 63 24 1 54 116 179 240 2.74e-19 86.3
Msa1082450 MtrunA17_Chr3g0099641 39.516 124 60 4 3 123 213 324 3.18e-19 87.0
Msa1082450 MtrunA17_Chr4g0042831 44.706 85 46 1 54 138 279 362 3.98e-19 86.3
Msa1082450 MtrunA17_Chr4g0042831 38.372 86 45 3 42 125 139 218 1.42e-11 64.3
Msa1082450 MtrunA17_Chr2g0288871 46.429 84 39 1 30 113 288 365 4.21e-19 86.7
Msa1082450 MtrunA17_Chr4g0051181 55.556 63 28 0 53 115 243 305 7.52e-19 85.9
Msa1082450 MtrunA17_Chr1g0194481 50.000 74 36 1 54 127 159 231 1.03e-18 84.3
Msa1082450 MtrunA17_Chr4g0075201 55.556 63 28 0 53 115 267 329 1.83e-18 84.7
Msa1082450 MtrunA17_Chr2g0294231 47.945 73 37 1 54 126 204 275 2.02e-18 84.0
Msa1082450 MtrunA17_Chr7g0216891 50.000 74 34 1 53 123 219 292 2.04e-18 84.7
Msa1082450 MtrunA17_Chr5g0418191 50.000 70 34 1 54 123 321 389 5.72e-18 83.2
Msa1082450 MtrunA17_Chr5g0418191 47.826 69 32 3 54 120 152 218 4.59e-12 65.9
Msa1082450 MtrunA17_Chr7g0218081 51.429 70 33 1 54 123 411 479 6.07e-18 83.2
Msa1082450 MtrunA17_Chr7g0218081 51.667 60 27 2 54 113 229 286 5.98e-12 65.5
Msa1082450 MtrunA17_Chr4g0025061 40.659 91 51 1 49 136 356 446 7.27e-18 83.2
Msa1082450 MtrunA17_Chr2g0322391 36.585 123 69 2 17 136 319 435 7.64e-18 83.2
Msa1082450 MtrunA17_Chr8g0347251 35.354 198 96 8 3 197 91 259 1.12e-17 81.6
Msa1082450 MtrunA17_Chr7g0270191 39.806 103 56 3 54 151 146 247 1.73e-17 80.5
Msa1082450 MtrunA17_Chr4g0025051 43.750 80 42 1 49 125 331 410 3.50e-17 81.3
Msa1082450 MtrunA17_Chr7g0238921 35.359 181 97 6 45 219 116 282 8.47e-17 79.0
Msa1082450 MtrunA17_Chr4g0068541 31.013 158 96 4 54 200 209 364 1.20e-16 79.3
Msa1082450 MtrunA17_Chr5g0447701 38.211 123 63 3 13 123 200 321 1.30e-16 79.0
Msa1082450 MtrunA17_Chr5g0443131 55.556 63 27 1 54 116 158 219 1.36e-16 78.2
Msa1082450 MtrunA17_Chr5g0445311 50.000 70 34 1 54 123 365 433 1.37e-16 79.3
Msa1082450 MtrunA17_Chr5g0445311 51.667 60 27 2 54 113 201 258 2.50e-12 66.6
Msa1082450 MtrunA17_Chr4g0001361 47.059 68 36 0 54 121 163 230 1.40e-16 78.2
Msa1082450 MtrunA17_Chr2g0302391 50.725 69 34 0 54 122 212 280 1.56e-16 79.0
Msa1082450 MtrunA17_Chr3g0101131 37.815 119 69 3 9 123 367 484 1.58e-16 79.3
Msa1082450 MtrunA17_Chr3g0101131 50.000 60 28 2 54 113 244 301 1.49e-11 64.3
Msa1082450 MtrunA17_Chr4g0060271 54.098 61 28 0 53 113 255 315 2.49e-16 78.6
Msa1082450 MtrunA17_Chr3g0079691 53.030 66 30 1 54 119 496 560 3.97e-16 78.2
Msa1082450 MtrunA17_Chr3g0079691 53.846 65 27 3 50 113 276 338 7.51e-14 71.2
Msa1082450 MtrunA17_Chr1g0150801 54.237 59 26 1 54 112 103 160 5.46e-16 73.6
Msa1082450 MtrunA17_Chr7g0263531 50.000 70 32 2 53 122 361 427 5.84e-16 77.4
Msa1082450 MtrunA17_Chr7g0263531 53.333 60 26 2 54 113 190 247 1.73e-13 70.1
Msa1082450 MtrunA17_Chr4g0024391 38.182 110 59 2 30 136 212 315 8.45e-16 77.0
Msa1082450 MtrunA17_Chr2g0333851 45.588 68 37 0 54 121 170 237 8.83e-16 75.9
Msa1082450 MtrunA17_Chr7g0224801 50.000 58 28 1 54 111 94 150 2.25e-15 72.4
Msa1082450 MtrunA17_Chr7g0275531 41.026 117 60 4 3 113 71 184 2.81e-15 74.7
Msa1082450 MtrunA17_Chr4g0074001 45.070 71 38 1 43 113 349 418 3.23e-15 75.1
Msa1082450 MtrunA17_Chr5g0418781 42.574 101 55 3 10 110 83 180 3.56e-15 73.9
Msa1082450 MtrunA17_Chr3g0136961 32.967 182 102 6 39 205 117 293 3.76e-15 73.9
Msa1082450 MtrunA17_Chr7g0249301 50.000 62 30 1 54 115 293 353 4.51e-15 74.3
Msa1082450 MtrunA17_Chr7g0249301 48.387 62 30 2 54 115 63 122 3.78e-13 68.9
Msa1082450 MtrunA17_Chr7g0249311 50.000 62 30 1 54 115 393 453 1.08e-14 73.9
Msa1082450 MtrunA17_Chr7g0249311 53.333 60 26 2 54 113 180 237 7.08e-13 68.6
Msa1082450 MtrunA17_Chr4g0004911 48.387 62 31 1 54 115 337 397 1.12e-14 73.6
Msa1082450 MtrunA17_Chr4g0004911 53.333 60 27 1 54 113 185 243 1.82e-13 70.1
Msa1082450 MtrunA17_Chr7g0243891 48.485 66 33 1 54 119 375 439 1.76e-14 73.2
Msa1082450 MtrunA17_Chr7g0243891 55.000 60 25 2 54 113 217 274 6.79e-14 71.2
Msa1082450 MtrunA17_Chr3g0106491 50.000 68 32 2 54 121 199 264 2.26e-14 72.8
Msa1082450 MtrunA17_Chr3g0106491 45.205 73 39 1 54 126 366 437 2.33e-14 72.8
Msa1082450 MtrunA17_Chr8g0387981 34.756 164 80 5 24 183 106 246 2.32e-14 72.4
Msa1082450 MtrunA17_Chr3g0126391 53.226 62 27 1 49 108 129 190 2.57e-14 72.0
Msa1082450 MtrunA17_Chr5g0432161 49.254 67 33 1 54 120 422 487 3.16e-14 72.4
Msa1082450 MtrunA17_Chr5g0432161 55.000 60 25 2 54 113 245 302 2.26e-13 69.7
Msa1082450 MtrunA17_Chr3g0129321 50.000 60 29 1 54 113 119 177 4.36e-14 69.3
Msa1082450 MtrunA17_Chr8g0383251 50.000 60 29 1 54 113 109 167 4.90e-14 68.9
Msa1082450 MtrunA17_Chr7g0248721 55.172 58 24 2 54 111 142 197 5.76e-14 69.3
Msa1082450 MtrunA17_Chr6g0485431 46.250 80 35 3 35 113 142 214 6.98e-14 70.9
Msa1082450 MtrunA17_Chr1g0150281 47.368 57 30 0 54 110 141 197 2.35e-13 68.6
Msa1082450 MtrunA17_Chr1g0150271 46.667 60 32 0 54 113 102 161 2.62e-13 68.2
Msa1082450 MtrunA17_Chr1g0188941 46.032 63 33 1 54 116 52 113 2.69e-13 65.1
Msa1082450 MtrunA17_Chr8g0335811 54.386 57 25 1 54 110 155 210 4.56e-13 67.0
Msa1082450 MtrunA17_Chr1g0189391 53.448 58 25 2 54 110 98 154 2.41e-12 66.2
Msa1082450 MtrunA17_Chr8g0386241 44.828 58 31 1 54 111 104 160 1.06e-11 62.4
Msa1082450 MtrunA17_Chr3g0129361 49.123 57 28 1 54 110 145 200 2.58e-11 62.0
Msa1082450 MtrunA17_Chr8g0383351 49.123 57 28 1 54 110 161 216 3.15e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082450 AT2G34830.1 53.913 115 52 1 1 114 162 276 6.20e-35 130
Msa1082450 AT2G34830.2 53.913 115 52 1 1 114 171 285 6.85e-35 130
Msa1082450 AT3G58710.2 54.839 124 41 3 10 119 14 136 1.27e-34 126
Msa1082450 AT3G58710.1 61.224 98 34 2 25 119 41 137 7.80e-34 124
Msa1082450 AT4G01250.1 50.000 132 44 4 24 144 108 228 2.23e-33 124
Msa1082450 AT1G29280.1 60.000 100 35 3 25 121 44 141 1.19e-32 120
Msa1082450 AT1G30650.1 59.375 96 38 1 19 113 182 277 1.42e-32 124
Msa1082450 AT5G52830.1 43.226 155 70 3 24 168 144 290 5.83e-31 118
Msa1082450 AT2G23320.1 53.333 90 36 2 22 110 213 297 8.05e-27 106
Msa1082450 AT4G23550.1 56.522 92 39 1 43 134 130 220 2.75e-26 105
Msa1082450 AT4G24240.1 56.180 89 35 2 22 110 254 338 5.05e-26 105
Msa1082450 AT5G45050.2 54.945 91 33 1 24 114 1131 1213 1.45e-25 106
Msa1082450 AT5G45050.1 54.945 91 33 1 24 114 1159 1241 1.63e-25 106
Msa1082450 AT5G45050.4 54.945 91 33 1 24 114 1020 1102 1.77e-25 106
Msa1082450 AT2G30590.1 52.222 90 39 2 22 111 286 371 2.65e-25 103
Msa1082450 AT4G31550.2 54.651 86 35 2 25 110 221 302 3.30e-24 99.8
Msa1082450 AT5G28650.1 51.613 93 41 1 18 110 231 319 5.19e-24 99.4
Msa1082450 AT2G24570.1 56.000 75 31 1 36 110 228 300 5.36e-24 99.4
Msa1082450 AT4G31550.1 56.000 75 31 1 36 110 231 303 6.69e-24 99.0
Msa1082450 AT3G04670.1 47.872 94 43 2 18 110 231 319 1.05e-23 98.6
Msa1082450 AT5G45260.1 57.534 73 26 2 53 120 1208 1280 2.78e-21 94.0
Msa1082450 AT1G29860.1 58.209 67 27 1 54 120 137 202 3.27e-20 88.2
Msa1082450 AT4G04450.2 43.137 102 52 3 28 123 170 271 1.02e-19 88.6
Msa1082450 AT4G04450.1 43.137 102 52 3 28 123 264 365 1.05e-19 89.0
Msa1082450 AT1G68150.1 54.167 72 30 1 53 121 235 306 1.11e-19 88.2
Msa1082450 AT4G18170.1 48.485 99 48 2 20 116 137 234 2.16e-19 86.7
Msa1082450 AT2G04880.2 57.971 69 28 1 53 121 283 350 2.30e-19 87.8
Msa1082450 AT2G04880.2 44.444 72 38 2 54 125 112 181 1.69e-12 67.4
Msa1082450 AT2G04880.1 57.971 69 28 1 53 121 307 374 3.02e-19 87.4
Msa1082450 AT2G04880.1 44.444 72 38 2 54 125 112 181 1.79e-12 67.4
Msa1082450 AT4G22070.4 46.429 84 39 1 30 113 280 357 3.68e-19 87.4
Msa1082450 AT4G22070.3 46.429 84 39 1 30 113 280 357 3.68e-19 87.4
Msa1082450 AT4G22070.2 46.429 84 39 1 30 113 280 357 3.68e-19 87.4
Msa1082450 AT4G22070.1 46.429 84 39 1 30 113 280 357 3.68e-19 87.4
Msa1082450 AT5G46350.1 62.295 61 22 1 54 114 184 243 4.10e-19 85.9
Msa1082450 AT1G62300.1 57.377 61 26 0 53 113 312 372 8.08e-19 86.3
Msa1082450 AT5G49520.1 60.000 60 23 1 54 113 222 280 9.96e-19 85.5
Msa1082450 AT1G18860.1 49.412 85 37 2 29 113 221 299 1.37e-18 85.5
Msa1082450 AT5G15130.1 51.351 74 33 1 53 123 227 300 5.64e-18 84.0
Msa1082450 AT5G15130.2 51.351 74 33 1 53 123 185 258 7.80e-18 83.6
Msa1082450 AT4G26640.5 34.228 149 75 4 12 150 176 311 1.31e-17 82.0
Msa1082450 AT4G26640.5 50.794 63 29 2 51 113 33 93 1.87e-12 67.0
Msa1082450 AT4G26640.6 34.228 149 75 4 12 150 176 311 1.31e-17 82.0
Msa1082450 AT4G26640.6 50.794 63 29 2 51 113 33 93 1.87e-12 67.0
Msa1082450 AT4G26640.4 34.228 149 75 4 12 150 176 311 1.31e-17 82.0
Msa1082450 AT4G26640.4 50.794 63 29 2 51 113 33 93 1.87e-12 67.0
Msa1082450 AT4G26640.3 34.228 149 75 4 12 150 176 311 1.31e-17 82.0
Msa1082450 AT4G26640.3 50.794 63 29 2 51 113 33 93 1.87e-12 67.0
Msa1082450 AT4G01720.1 45.122 82 39 1 32 113 224 299 2.07e-17 82.0
Msa1082450 AT4G26640.1 34.228 149 75 4 12 150 280 415 2.17e-17 82.0
Msa1082450 AT4G26640.1 50.794 63 29 2 51 113 137 197 2.72e-12 67.0
Msa1082450 AT4G26640.7 34.228 149 75 4 12 150 312 447 2.48e-17 82.0
Msa1082450 AT4G26640.7 50.794 63 29 2 51 113 169 229 2.95e-12 67.0
Msa1082450 AT4G26640.2 34.228 149 75 4 12 150 352 487 2.63e-17 82.0
Msa1082450 AT4G26640.2 50.794 63 29 2 51 113 209 269 2.82e-12 67.0
Msa1082450 AT4G31800.2 53.226 62 29 0 54 115 112 173 4.01e-17 79.0
Msa1082450 AT1G80840.1 38.144 97 51 1 54 141 147 243 4.55e-17 79.7
Msa1082450 AT4G31800.1 53.226 62 29 0 54 115 177 238 4.64e-17 79.7
Msa1082450 AT2G25000.2 50.746 67 33 0 54 120 104 170 7.58e-17 77.8
Msa1082450 AT2G25000.4 50.746 67 33 0 54 120 104 170 7.58e-17 77.8
Msa1082450 AT2G21900.1 33.019 106 68 2 11 116 69 171 8.10e-17 77.4
Msa1082450 AT2G03340.1 42.857 84 45 2 54 137 416 496 8.14e-17 80.5
Msa1082450 AT2G03340.1 32.847 137 89 3 37 172 233 367 2.36e-13 70.1
Msa1082450 AT3G62340.1 55.556 63 27 1 54 116 119 180 9.74e-17 78.6
Msa1082450 AT2G25000.3 50.746 67 33 0 54 120 126 192 1.12e-16 77.8
Msa1082450 AT1G13960.2 52.632 57 26 1 54 110 257 312 1.13e-16 79.3
Msa1082450 AT1G13960.2 53.333 60 26 2 54 113 77 134 1.46e-13 70.5
Msa1082450 AT2G25000.1 50.746 67 33 0 54 120 147 213 1.44e-16 77.8
Msa1082450 AT1G13960.1 52.632 57 26 1 54 110 410 465 1.97e-16 79.3
Msa1082450 AT1G13960.1 53.333 60 26 2 54 113 230 287 2.10e-13 70.5
Msa1082450 AT2G38470.1 46.154 78 41 1 54 131 363 439 2.32e-16 79.0
Msa1082450 AT2G38470.1 51.667 60 27 2 54 113 185 242 1.52e-12 67.8
Msa1082450 AT2G30250.1 55.556 63 27 1 54 116 329 390 3.00e-16 78.2
Msa1082450 AT1G55600.1 48.438 64 32 1 52 115 306 368 4.26e-16 78.2
Msa1082450 AT5G13080.1 50.000 58 28 1 54 111 68 124 4.63e-16 73.9
Msa1082450 AT4G23810.1 48.276 87 40 2 24 108 132 215 4.66e-16 77.4
Msa1082450 AT1G69310.4 44.565 92 47 4 19 110 116 203 5.46e-16 76.6
Msa1082450 AT1G69310.2 44.565 92 47 4 19 110 116 203 5.46e-16 76.6
Msa1082450 AT1G69310.1 44.565 92 47 4 19 110 116 203 5.46e-16 76.6
Msa1082450 AT4G30935.1 48.438 64 32 1 50 113 328 390 1.32e-15 76.6
Msa1082450 AT3G01080.1 52.381 63 29 1 51 113 304 365 2.46e-15 75.9
Msa1082450 AT3G01080.1 53.333 60 26 2 54 113 168 225 1.06e-12 68.2
Msa1082450 AT5G56270.1 53.226 62 28 1 54 115 488 548 2.49e-15 76.3
Msa1082450 AT5G56270.1 35.156 128 77 5 50 174 269 393 1.88e-12 67.8
Msa1082450 AT3G01080.2 53.333 60 27 1 54 113 345 403 3.33e-15 75.5
Msa1082450 AT3G01080.2 53.333 60 26 2 54 113 206 263 1.35e-12 67.8
Msa1082450 AT4G11070.2 41.509 106 57 2 5 108 64 166 3.57e-15 74.3
Msa1082450 AT5G26170.1 54.386 57 25 1 54 110 114 169 3.96e-15 72.0
Msa1082450 AT4G11070.1 41.509 106 57 2 5 108 96 198 4.20e-15 74.3
Msa1082450 AT2G47260.1 53.333 60 27 1 54 113 175 233 4.78e-15 74.3
Msa1082450 AT2G46130.1 49.275 69 34 1 54 122 31 98 7.17e-15 69.7
Msa1082450 AT2G46400.1 40.351 114 62 3 14 123 65 176 9.49e-15 73.2
Msa1082450 AT5G43290.1 46.429 84 41 3 29 110 89 170 1.54e-14 72.4
Msa1082450 AT1G64000.1 50.000 58 28 1 54 111 115 171 2.53e-14 70.5
Msa1082450 AT5G41570.1 50.000 58 28 1 54 111 99 155 2.72e-14 69.7
Msa1082450 AT4G26440.1 48.485 66 33 1 54 119 373 437 5.14e-14 72.0
Msa1082450 AT4G26440.1 53.333 60 26 2 54 113 179 236 5.00e-12 66.2
Msa1082450 AT5G24110.1 42.222 90 43 3 23 108 86 170 8.52e-14 70.5
Msa1082450 AT2G37260.3 54.386 57 25 1 54 110 270 325 1.03e-13 70.9
Msa1082450 AT2G37260.3 43.902 82 38 3 54 129 86 165 3.61e-11 63.2
Msa1082450 AT2G37260.1 54.386 57 25 1 54 110 350 405 1.04e-13 70.9
Msa1082450 AT2G37260.1 43.902 82 38 3 54 129 166 245 3.79e-11 63.5
Msa1082450 AT2G37260.2 54.386 57 25 1 54 110 268 323 1.06e-13 70.5
Msa1082450 AT2G37260.2 43.902 82 38 3 54 129 84 163 3.86e-11 63.2
Msa1082450 AT3G01970.1 47.368 57 29 1 54 110 66 121 1.07e-13 67.4
Msa1082450 AT5G07100.2 47.222 72 35 2 54 123 25 95 1.09e-13 68.9
Msa1082450 AT5G07100.2 50.820 61 29 1 54 114 142 201 2.66e-13 67.8
Msa1082450 AT5G07100.4 47.222 72 35 2 54 123 25 95 1.09e-13 68.9
Msa1082450 AT5G07100.4 50.820 61 29 1 54 114 142 201 2.66e-13 67.8
Msa1082450 AT5G07100.5 47.222 72 35 2 54 123 25 95 1.09e-13 68.9
Msa1082450 AT5G07100.5 50.820 61 29 1 54 114 142 201 2.66e-13 67.8
Msa1082450 AT5G07100.3 47.222 72 35 2 54 123 25 95 1.09e-13 68.9
Msa1082450 AT5G07100.3 50.820 61 29 1 54 114 142 201 2.66e-13 67.8
Msa1082450 AT2G44745.1 49.315 73 28 2 54 118 146 217 1.71e-13 68.6
Msa1082450 AT5G64810.1 50.877 57 27 1 54 110 111 166 2.16e-13 67.8
Msa1082450 AT5G07100.1 47.222 72 35 2 54 123 118 188 4.11e-13 68.6
Msa1082450 AT5G07100.1 50.820 61 29 1 54 114 235 294 6.63e-13 68.2
Msa1082450 AT1G69810.1 45.455 66 35 1 53 117 203 268 1.49e-12 67.4
Msa1082450 AT2G40740.1 49.315 73 32 2 52 119 172 244 1.56e-12 66.6
Msa1082450 AT3G01080.3 53.333 60 26 2 54 113 206 263 1.67e-12 67.0
Msa1082450 AT2G40740.3 49.315 73 32 2 52 119 181 253 1.79e-12 66.6
Msa1082450 AT1G69810.2 45.455 66 35 1 53 117 145 210 2.82e-12 66.2
Msa1082450 AT3G56400.1 28.387 155 97 4 54 203 121 266 1.61e-11 63.9
Msa1082450 AT4G39410.1 45.070 71 33 2 54 119 224 293 2.04e-11 63.5
Msa1082450 AT4G12020.6 44.048 84 38 4 42 123 462 538 2.17e-11 64.7
Msa1082450 AT4G12020.8 44.048 84 38 4 42 123 462 538 2.17e-11 64.7
Msa1082450 AT4G12020.10 44.048 84 38 4 42 123 462 538 2.37e-11 64.7
Msa1082450 AT4G12020.3 44.048 84 38 4 42 123 462 538 2.37e-11 64.7
Msa1082450 AT4G12020.7 44.048 84 38 4 42 123 462 538 2.42e-11 64.7
Msa1082450 AT4G12020.1 44.048 84 38 4 42 123 462 538 2.61e-11 64.3
Msa1082450 AT4G12020.9 44.048 84 38 4 42 123 462 538 2.61e-11 64.3
Msa1082450 AT4G12020.11 44.048 84 38 4 42 123 462 538 2.70e-11 64.3
Msa1082450 AT4G12020.4 44.048 84 38 4 42 123 462 538 2.74e-11 64.3
Msa1082450 AT4G12020.5 44.048 84 38 4 42 123 395 471 2.97e-11 64.3
Msa1082450 AT4G12020.2 44.048 84 38 4 42 123 462 538 3.04e-11 64.3
Msa1082450 AT1G69310.3 41.304 92 46 5 19 110 116 199 3.12e-11 62.8

Find 58 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATCTGTTTCTGTTCT+TGG 0.057409 7_2:-82564172 None:intergenic
AATCTATCTGTTTCTGTTCT+TGG 0.106628 7_2:-82564136 None:intergenic
TCAGATCACAATTGAATTTA+AGG 0.109911 7_2:+82562462 Msa1082450:five_prime_UTR
ATCTTTGGTTGTTTCGGTTT+CGG 0.251832 7_2:-82564087 None:intergenic
GAGGAGAGGGCTGTGGGATC+TGG 0.256988 7_2:-82564032 None:intergenic
CAAAATAGATCTTCTCTTAG+AGG 0.264483 7_2:+82564349 Msa1082450:CDS
TTCTTAGATACTTGAGATTC+TGG 0.282785 7_2:-82562544 None:intergenic
AGATGTTTCTGACTCAAGTT+TGG 0.285896 7_2:-82562509 None:intergenic
TTACTTTGAAAGGATCTTCT+TGG 0.303191 7_2:-82564304 None:intergenic
GAAGGAGAATGAATAGATAA+TGG 0.313743 7_2:-82562361 None:intergenic
AGATCCTTTCAAAGTAAATA+TGG 0.318455 7_2:+82564310 Msa1082450:CDS
TGGGAGATCTTTGGTTGTTT+CGG 0.331416 7_2:-82564093 None:intergenic
AGAAGTAACTGGGAGATCTT+TGG 0.334573 7_2:-82564102 None:intergenic
ACAGAAACAGATAGATTCTA+AGG 0.337204 7_2:+82564142 Msa1082450:CDS
AAGAATGCACACCTTGGATA+TGG 0.343407 7_2:-82562831 None:intergenic
CAAAATGTATTGTTCATATA+TGG 0.350457 7_2:+82564580 Msa1082450:three_prime_UTR
GTTTCGGTTTCGGATTCTTT+TGG 0.357685 7_2:-82564077 None:intergenic
AGATCTCCCAGTTACTTCTA+AGG 0.363955 7_2:+82564106 Msa1082450:CDS
GATGTTTCTGACTCAAGTTT+GGG 0.377930 7_2:-82562508 None:intergenic
GGATATGGAGAGCCTTTGAT+TGG 0.415352 7_2:-82562816 None:intergenic
TGTGGTGGAGGAGAGGGCTG+TGG 0.417541 7_2:-82564039 None:intergenic
ATCAATCAAGAAGGGGCAAC+AGG 0.418051 7_2:-82564515 None:intergenic
AAATAATTAATAGAGTAGCT+AGG 0.425625 7_2:-82562390 None:intergenic
AATAATTAATAGAGTAGCTA+GGG 0.428437 7_2:-82562389 None:intergenic
AAGGAGAATGAATAGATAAT+GGG 0.446909 7_2:-82562360 None:intergenic
AAATCTACAGGGGATATTAT+AGG 0.447185 7_2:+82563910 Msa1082450:intron
AATTGAATTTAAGGTGGCTA+TGG 0.461268 7_2:+82562471 Msa1082450:exon
CTAAATTTGTGGTGGAGGAG+AGG 0.461743 7_2:-82564046 None:intergenic
AGAGTAGCTAGGGAGGGAGA+AGG 0.483905 7_2:-82562379 None:intergenic
AACACTTGAATCAATCAAGA+AGG 0.485790 7_2:-82564524 None:intergenic
AATTAATAGAGTAGCTAGGG+AGG 0.493206 7_2:-82562386 None:intergenic
GTGGTGGAGGAGAGGGCTGT+GGG 0.511415 7_2:-82564038 None:intergenic
AATCTCAAGTATCTAAGAAA+CGG 0.515113 7_2:+82562548 Msa1082450:CDS
TTGAGCTAAATTTGTGGTGG+AGG 0.523930 7_2:-82564051 None:intergenic
GTTAGCAAGGTGAAGAATGA+AGG 0.526261 7_2:+82562750 Msa1082450:CDS
TGGTCGTTGAGCTAAATTTG+TGG 0.534592 7_2:-82564057 None:intergenic
ACGGTTGTGACTGTGAGGAT+TGG 0.535468 7_2:+82562720 Msa1082450:CDS
TTATAGGTGCAGCACATGCA+AGG 0.538816 7_2:+82563926 Msa1082450:CDS
TAAATTTGTGGTGGAGGAGA+GGG 0.544962 7_2:-82564045 None:intergenic
ACACTTGAATCAATCAAGAA+GGG 0.556191 7_2:-82564523 None:intergenic
GATTGGAGAGAATGTTAGCA+AGG 0.558707 7_2:+82562737 Msa1082450:CDS
TTTCTTCCTTAGAAGTAACT+GGG 0.572607 7_2:-82564112 None:intergenic
AGAACAGAAACAGATAGAAG+AGG 0.574832 7_2:+82564175 Msa1082450:CDS
ATTAATAGAGTAGCTAGGGA+GGG 0.580410 7_2:-82562385 None:intergenic
TGTAAAATAGACGAAGACAT+AGG 0.585824 7_2:-82564458 None:intergenic
AGAGGGCTGTGGGATCTGGA+TGG 0.593338 7_2:-82564028 None:intergenic
ATGGTTATGTGTTGAAGTAT+AGG 0.596238 7_2:-82564009 None:intergenic
TATAGGTGCAGCACATGCAA+GGG 0.614000 7_2:+82563927 Msa1082450:CDS
ATGTTTCTGACTCAAGTTTG+GGG 0.614751 7_2:-82562507 None:intergenic
GATCACAATTGAATTTAAGG+TGG 0.620746 7_2:+82562465 Msa1082450:five_prime_UTR
TCAAAGGCTCTCCATATCCA+AGG 0.621296 7_2:+82562820 Msa1082450:CDS
ATGTCCTCTGAGCAGTGTGT+TGG 0.622572 7_2:-82564272 None:intergenic
TCGTTGAGCTAAATTTGTGG+TGG 0.624880 7_2:-82564054 None:intergenic
CACTTGAATCAATCAAGAAG+GGG 0.629385 7_2:-82564522 None:intergenic
TGTTTCTGACTCAAGTTTGG+GGG 0.636435 7_2:-82562506 None:intergenic
TTTAACTGTGCATAGCAGAG+TGG 0.661783 7_2:-82564377 None:intergenic
ATCTCCAACACACTGCTCAG+AGG 0.702439 7_2:+82564268 Msa1082450:CDS
AGAAAACGGTTGTGACTGTG+AGG 0.708929 7_2:+82562715 Msa1082450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTTTCTAGTTTT+TGG + chr7_2:82562623-82562642 Msa1082450:intron 10.0%
!!! TCATTTTTTCAAATTAATAT+TGG + chr7_2:82563808-82563827 Msa1082450:intron 10.0%
!!! TTTTTTAATTTTCTAGTTTT+TGG + chr7_2:82562623-82562642 Msa1082450:intron 10.0%
!!! TCATTTTTTCAAATTAATAT+TGG + chr7_2:82563808-82563827 Msa1082450:intron 10.0%
!! AAGTAAGTTAAGAATTAATT+TGG + chr7_2:82563634-82563653 Msa1082450:intron 15.0%
!! AAGTAAGTTAAGAATTAATT+TGG + chr7_2:82563634-82563653 Msa1082450:intron 15.0%
!! AATAATTAATAGAGTAGCTA+GGG - chr7_2:82562392-82562411 None:intergenic 20.0%
!! AAATAATTAATAGAGTAGCT+AGG - chr7_2:82562393-82562412 None:intergenic 20.0%
!! CATTAATTGAATCAGATATA+TGG + chr7_2:82562887-82562906 Msa1082450:intron 20.0%
!! AATATCATAAAAACTTGAGT+TGG - chr7_2:82563521-82563540 None:intergenic 20.0%
!! ATAAGAACCATATGAAATAA+TGG + chr7_2:82563545-82563564 Msa1082450:intron 20.0%
!! AAAAGAACCATTATTTCATA+TGG - chr7_2:82563555-82563574 None:intergenic 20.0%
!!! ATAATGGTTCTTTTATAACA+CGG + chr7_2:82563561-82563580 Msa1082450:intron 20.0%
!!! AATGGTTTTGATAAAAATTG+TGG + chr7_2:82563594-82563613 Msa1082450:intron 20.0%
!!! ATGGTTTTGATAAAAATTGT+GGG + chr7_2:82563595-82563614 Msa1082450:intron 20.0%
!!! TTTTCCATATTTACTTTGAA+AGG - chr7_2:82564317-82564336 None:intergenic 20.0%
!! CAAAATGTATTGTTCATATA+TGG + chr7_2:82564580-82564599 Msa1082450:three_prime_UTR 20.0%
!! AATAATTAATAGAGTAGCTA+GGG - chr7_2:82562392-82562411 None:intergenic 20.0%
!! AAATAATTAATAGAGTAGCT+AGG - chr7_2:82562393-82562412 None:intergenic 20.0%
!! CATTAATTGAATCAGATATA+TGG + chr7_2:82562887-82562906 Msa1082450:intron 20.0%
!! AATATCATAAAAACTTGAGT+TGG - chr7_2:82563521-82563540 None:intergenic 20.0%
!! ATAAGAACCATATGAAATAA+TGG + chr7_2:82563545-82563564 Msa1082450:intron 20.0%
!! AAAAGAACCATTATTTCATA+TGG - chr7_2:82563555-82563574 None:intergenic 20.0%
!!! ATAATGGTTCTTTTATAACA+CGG + chr7_2:82563561-82563580 Msa1082450:intron 20.0%
!!! AATGGTTTTGATAAAAATTG+TGG + chr7_2:82563594-82563613 Msa1082450:intron 20.0%
!!! ATGGTTTTGATAAAAATTGT+GGG + chr7_2:82563595-82563614 Msa1082450:intron 20.0%
!!! TTTTCCATATTTACTTTGAA+AGG - chr7_2:82564317-82564336 None:intergenic 20.0%
!! CAAAATGTATTGTTCATATA+TGG + chr7_2:82564580-82564599 Msa1082450:three_prime_UTR 20.0%
! AAGGAGAATGAATAGATAAT+GGG - chr7_2:82562363-82562382 None:intergenic 25.0%
!!! CTGAGATTTTTAGATTTAAG+AGG - chr7_2:82562446-82562465 None:intergenic 25.0%
! TCAGATCACAATTGAATTTA+AGG + chr7_2:82562462-82562481 Msa1082450:five_prime_UTR 25.0%
! AATCTCAAGTATCTAAGAAA+CGG + chr7_2:82562548-82562567 Msa1082450:CDS 25.0%
! ATGATGATTATCATATCTAG+TGG - chr7_2:82562858-82562877 None:intergenic 25.0%
! TGTAACTAAAAAGAGATATG+AGG - chr7_2:82563160-82563179 None:intergenic 25.0%
! AAGATCTTAAAACATCTCTA+AGG - chr7_2:82563461-82563480 None:intergenic 25.0%
! AACATTAAACAAACTGCAAT+AGG - chr7_2:82563885-82563904 None:intergenic 25.0%
!! TATTGCAGTTTGTTTAATGT+TGG + chr7_2:82563884-82563903 Msa1082450:intron 25.0%
! AGATCCTTTCAAAGTAAATA+TGG + chr7_2:82564310-82564329 Msa1082450:CDS 25.0%
! AAGGAGAATGAATAGATAAT+GGG - chr7_2:82562363-82562382 None:intergenic 25.0%
!!! CTGAGATTTTTAGATTTAAG+AGG - chr7_2:82562446-82562465 None:intergenic 25.0%
! TCAGATCACAATTGAATTTA+AGG + chr7_2:82562462-82562481 Msa1082450:five_prime_UTR 25.0%
! AATCTCAAGTATCTAAGAAA+CGG + chr7_2:82562548-82562567 Msa1082450:CDS 25.0%
! ATGATGATTATCATATCTAG+TGG - chr7_2:82562858-82562877 None:intergenic 25.0%
! TGTAACTAAAAAGAGATATG+AGG - chr7_2:82563160-82563179 None:intergenic 25.0%
! AAGATCTTAAAACATCTCTA+AGG - chr7_2:82563461-82563480 None:intergenic 25.0%
! AACATTAAACAAACTGCAAT+AGG - chr7_2:82563885-82563904 None:intergenic 25.0%
!! TATTGCAGTTTGTTTAATGT+TGG + chr7_2:82563884-82563903 Msa1082450:intron 25.0%
! AGATCCTTTCAAAGTAAATA+TGG + chr7_2:82564310-82564329 Msa1082450:CDS 25.0%
GAAGGAGAATGAATAGATAA+TGG - chr7_2:82562364-82562383 None:intergenic 30.0%
GATCACAATTGAATTTAAGG+TGG + chr7_2:82562465-82562484 Msa1082450:five_prime_UTR 30.0%
! AATTGAATTTAAGGTGGCTA+TGG + chr7_2:82562471-82562490 Msa1082450:exon 30.0%
TTCTTAGATACTTGAGATTC+TGG - chr7_2:82562547-82562566 None:intergenic 30.0%
! GAACATAGAGTTCTGATATT+TGG + chr7_2:82562584-82562603 Msa1082450:intron 30.0%
! TAGAGTTCTGATATTTGGTT+TGG + chr7_2:82562589-82562608 Msa1082450:intron 30.0%
CAGAAAAATGGTTGAGAAAA+CGG + chr7_2:82562701-82562720 Msa1082450:intron 30.0%
TATGGACAAAAACCAATCAA+AGG + chr7_2:82562804-82562823 Msa1082450:CDS 30.0%
TATATGCTGACAGAATCAAT+AGG + chr7_2:82563194-82563213 Msa1082450:intron 30.0%
ATATGCTGACAGAATCAATA+GGG + chr7_2:82563195-82563214 Msa1082450:intron 30.0%
GTCACATTAAGAAACTTCTT+TGG - chr7_2:82563278-82563297 None:intergenic 30.0%
ACACAATACTAATACAAGCT+TGG + chr7_2:82563332-82563351 Msa1082450:intron 30.0%
TTAAGCCATGTCTTGATATA+AGG + chr7_2:82563414-82563433 Msa1082450:intron 30.0%
ATTGTCCTTATATCAAGACA+TGG - chr7_2:82563422-82563441 None:intergenic 30.0%
GGACAATTACTCATAGAAAT+TGG + chr7_2:82563435-82563454 Msa1082450:intron 30.0%
TAACACGGTCTATCAATAAA+TGG + chr7_2:82563576-82563595 Msa1082450:intron 30.0%
TAATGTTGGTACAAATCTAC+AGG + chr7_2:82563898-82563917 Msa1082450:intron 30.0%
AATGTTGGTACAAATCTACA+GGG + chr7_2:82563899-82563918 Msa1082450:intron 30.0%
AAATCTACAGGGGATATTAT+AGG + chr7_2:82563910-82563929 Msa1082450:intron 30.0%
ATGGTTATGTGTTGAAGTAT+AGG - chr7_2:82564012-82564031 None:intergenic 30.0%
TTTCTTCCTTAGAAGTAACT+GGG - chr7_2:82564115-82564134 None:intergenic 30.0%
! TTTTCTTCCTTAGAAGTAAC+TGG - chr7_2:82564116-82564135 None:intergenic 30.0%
!! AATCTATCTGTTTCTGTTCT+TGG - chr7_2:82564139-82564158 None:intergenic 30.0%
ACAGAAACAGATAGATTCTA+AGG + chr7_2:82564142-82564161 Msa1082450:CDS 30.0%
! TTACTTTGAAAGGATCTTCT+TGG - chr7_2:82564307-82564326 None:intergenic 30.0%
! GAAGATCTATTTTGTCAATG+TGG - chr7_2:82564343-82564362 None:intergenic 30.0%
CAAAATAGATCTTCTCTTAG+AGG + chr7_2:82564349-82564368 Msa1082450:CDS 30.0%
!!! TGATTTTTTCGATGAACTTG+AGG + chr7_2:82564430-82564449 Msa1082450:CDS 30.0%
TGTAAAATAGACGAAGACAT+AGG - chr7_2:82564461-82564480 None:intergenic 30.0%
ACACTTGAATCAATCAAGAA+GGG - chr7_2:82564526-82564545 None:intergenic 30.0%
AACACTTGAATCAATCAAGA+AGG - chr7_2:82564527-82564546 None:intergenic 30.0%
GAAGGAGAATGAATAGATAA+TGG - chr7_2:82562364-82562383 None:intergenic 30.0%
GATCACAATTGAATTTAAGG+TGG + chr7_2:82562465-82562484 Msa1082450:five_prime_UTR 30.0%
! AATTGAATTTAAGGTGGCTA+TGG + chr7_2:82562471-82562490 Msa1082450:exon 30.0%
TTCTTAGATACTTGAGATTC+TGG - chr7_2:82562547-82562566 None:intergenic 30.0%
! GAACATAGAGTTCTGATATT+TGG + chr7_2:82562584-82562603 Msa1082450:intron 30.0%
! TAGAGTTCTGATATTTGGTT+TGG + chr7_2:82562589-82562608 Msa1082450:intron 30.0%
CAGAAAAATGGTTGAGAAAA+CGG + chr7_2:82562701-82562720 Msa1082450:intron 30.0%
TATGGACAAAAACCAATCAA+AGG + chr7_2:82562804-82562823 Msa1082450:CDS 30.0%
TATATGCTGACAGAATCAAT+AGG + chr7_2:82563194-82563213 Msa1082450:intron 30.0%
ATATGCTGACAGAATCAATA+GGG + chr7_2:82563195-82563214 Msa1082450:intron 30.0%
GTCACATTAAGAAACTTCTT+TGG - chr7_2:82563278-82563297 None:intergenic 30.0%
ACACAATACTAATACAAGCT+TGG + chr7_2:82563332-82563351 Msa1082450:intron 30.0%
TTAAGCCATGTCTTGATATA+AGG + chr7_2:82563414-82563433 Msa1082450:intron 30.0%
ATTGTCCTTATATCAAGACA+TGG - chr7_2:82563422-82563441 None:intergenic 30.0%
GGACAATTACTCATAGAAAT+TGG + chr7_2:82563435-82563454 Msa1082450:intron 30.0%
TAACACGGTCTATCAATAAA+TGG + chr7_2:82563576-82563595 Msa1082450:intron 30.0%
TAATGTTGGTACAAATCTAC+AGG + chr7_2:82563898-82563917 Msa1082450:intron 30.0%
AATGTTGGTACAAATCTACA+GGG + chr7_2:82563899-82563918 Msa1082450:intron 30.0%
AAATCTACAGGGGATATTAT+AGG + chr7_2:82563910-82563929 Msa1082450:intron 30.0%
ATGGTTATGTGTTGAAGTAT+AGG - chr7_2:82564012-82564031 None:intergenic 30.0%
TTTCTTCCTTAGAAGTAACT+GGG - chr7_2:82564115-82564134 None:intergenic 30.0%
! TTTTCTTCCTTAGAAGTAAC+TGG - chr7_2:82564116-82564135 None:intergenic 30.0%
!! AATCTATCTGTTTCTGTTCT+TGG - chr7_2:82564139-82564158 None:intergenic 30.0%
ACAGAAACAGATAGATTCTA+AGG + chr7_2:82564142-82564161 Msa1082450:CDS 30.0%
! TTACTTTGAAAGGATCTTCT+TGG - chr7_2:82564307-82564326 None:intergenic 30.0%
! GAAGATCTATTTTGTCAATG+TGG - chr7_2:82564343-82564362 None:intergenic 30.0%
CAAAATAGATCTTCTCTTAG+AGG + chr7_2:82564349-82564368 Msa1082450:CDS 30.0%
!!! TGATTTTTTCGATGAACTTG+AGG + chr7_2:82564430-82564449 Msa1082450:CDS 30.0%
TGTAAAATAGACGAAGACAT+AGG - chr7_2:82564461-82564480 None:intergenic 30.0%
ACACTTGAATCAATCAAGAA+GGG - chr7_2:82564526-82564545 None:intergenic 30.0%
AACACTTGAATCAATCAAGA+AGG - chr7_2:82564527-82564546 None:intergenic 30.0%
ATTAATAGAGTAGCTAGGGA+GGG - chr7_2:82562388-82562407 None:intergenic 35.0%
AATTAATAGAGTAGCTAGGG+AGG - chr7_2:82562389-82562408 None:intergenic 35.0%
! ATGTTTCTGACTCAAGTTTG+GGG - chr7_2:82562510-82562529 None:intergenic 35.0%
! GATGTTTCTGACTCAAGTTT+GGG - chr7_2:82562511-82562530 None:intergenic 35.0%
! AGATGTTTCTGACTCAAGTT+TGG - chr7_2:82562512-82562531 None:intergenic 35.0%
TTGTGCATGTCTCAGAAAAA+TGG + chr7_2:82562689-82562708 Msa1082450:intron 35.0%
! AAGGACTTCCTTCAGATTTT+TGG + chr7_2:82562769-82562788 Msa1082450:CDS 35.0%
!!! TTCCTTCAGATTTTTGGTCT+TGG + chr7_2:82562775-82562794 Msa1082450:CDS 35.0%
!!! TTTTGGTCTTGGAGGAAATA+TGG + chr7_2:82562786-82562805 Msa1082450:CDS 35.0%
TTGAATGTCACTACATGTGT+TGG + chr7_2:82562976-82562995 Msa1082450:intron 35.0%
CTTCAGATTAAATGAGTGTC+CGG - chr7_2:82563038-82563057 None:intergenic 35.0%
ATAGAAACAAGCATCATGAC+TGG - chr7_2:82563063-82563082 None:intergenic 35.0%
TATGCTGACAGAATCAATAG+GGG + chr7_2:82563196-82563215 Msa1082450:intron 35.0%
ATTTGGATTCTTTGCCAATG+AGG + chr7_2:82563651-82563670 Msa1082450:intron 35.0%
TCATATTGAAAGCAACGTGT+TGG + chr7_2:82563742-82563761 Msa1082450:intron 35.0%
ATAACCACATGTGTTAGTGT+GGG - chr7_2:82563777-82563796 None:intergenic 35.0%
TATAACCACATGTGTTAGTG+TGG - chr7_2:82563778-82563797 None:intergenic 35.0%
ATGTTGGTACAAATCTACAG+GGG + chr7_2:82563900-82563919 Msa1082450:intron 35.0%
!!! GCTTCTCTCTACTTGTTTTT+TGG - chr7_2:82563961-82563980 None:intergenic 35.0%
! ATCTTTGGTTGTTTCGGTTT+CGG - chr7_2:82564090-82564109 None:intergenic 35.0%
!! CTTCTATCTGTTTCTGTTCT+TGG - chr7_2:82564175-82564194 None:intergenic 35.0%
AGAACAGAAACAGATAGAAG+AGG + chr7_2:82564175-82564194 Msa1082450:CDS 35.0%
! CGTCTATTTTACACTTTACG+AGG + chr7_2:82564468-82564487 Msa1082450:CDS 35.0%
!!! GGAGCATTTTTTCTGATGAA+AGG + chr7_2:82564489-82564508 Msa1082450:CDS 35.0%
CACTTGAATCAATCAAGAAG+GGG - chr7_2:82564525-82564544 None:intergenic 35.0%
ATTAATAGAGTAGCTAGGGA+GGG - chr7_2:82562388-82562407 None:intergenic 35.0%
AATTAATAGAGTAGCTAGGG+AGG - chr7_2:82562389-82562408 None:intergenic 35.0%
! ATGTTTCTGACTCAAGTTTG+GGG - chr7_2:82562510-82562529 None:intergenic 35.0%
! GATGTTTCTGACTCAAGTTT+GGG - chr7_2:82562511-82562530 None:intergenic 35.0%
! AGATGTTTCTGACTCAAGTT+TGG - chr7_2:82562512-82562531 None:intergenic 35.0%
TTGTGCATGTCTCAGAAAAA+TGG + chr7_2:82562689-82562708 Msa1082450:intron 35.0%
! AAGGACTTCCTTCAGATTTT+TGG + chr7_2:82562769-82562788 Msa1082450:CDS 35.0%
!!! TTCCTTCAGATTTTTGGTCT+TGG + chr7_2:82562775-82562794 Msa1082450:CDS 35.0%
!!! TTTTGGTCTTGGAGGAAATA+TGG + chr7_2:82562786-82562805 Msa1082450:CDS 35.0%
TTGAATGTCACTACATGTGT+TGG + chr7_2:82562976-82562995 Msa1082450:intron 35.0%
CTTCAGATTAAATGAGTGTC+CGG - chr7_2:82563038-82563057 None:intergenic 35.0%
ATAGAAACAAGCATCATGAC+TGG - chr7_2:82563063-82563082 None:intergenic 35.0%
TATGCTGACAGAATCAATAG+GGG + chr7_2:82563196-82563215 Msa1082450:intron 35.0%
ATTTGGATTCTTTGCCAATG+AGG + chr7_2:82563651-82563670 Msa1082450:intron 35.0%
TCATATTGAAAGCAACGTGT+TGG + chr7_2:82563742-82563761 Msa1082450:intron 35.0%
ATAACCACATGTGTTAGTGT+GGG - chr7_2:82563777-82563796 None:intergenic 35.0%
TATAACCACATGTGTTAGTG+TGG - chr7_2:82563778-82563797 None:intergenic 35.0%
ATGTTGGTACAAATCTACAG+GGG + chr7_2:82563900-82563919 Msa1082450:intron 35.0%
!!! GCTTCTCTCTACTTGTTTTT+TGG - chr7_2:82563961-82563980 None:intergenic 35.0%
! ATCTTTGGTTGTTTCGGTTT+CGG - chr7_2:82564090-82564109 None:intergenic 35.0%
!! CTTCTATCTGTTTCTGTTCT+TGG - chr7_2:82564175-82564194 None:intergenic 35.0%
AGAACAGAAACAGATAGAAG+AGG + chr7_2:82564175-82564194 Msa1082450:CDS 35.0%
! CGTCTATTTTACACTTTACG+AGG + chr7_2:82564468-82564487 Msa1082450:CDS 35.0%
!!! GGAGCATTTTTTCTGATGAA+AGG + chr7_2:82564489-82564508 Msa1082450:CDS 35.0%
CACTTGAATCAATCAAGAAG+GGG - chr7_2:82564525-82564544 None:intergenic 35.0%
! TGTTTCTGACTCAAGTTTGG+GGG - chr7_2:82562509-82562528 None:intergenic 40.0%
GATTGGAGAGAATGTTAGCA+AGG + chr7_2:82562737-82562756 Msa1082450:CDS 40.0%
GTTAGCAAGGTGAAGAATGA+AGG + chr7_2:82562750-82562769 Msa1082450:CDS 40.0%
CTCCAAGACCAAAAATCTGA+AGG - chr7_2:82562780-82562799 None:intergenic 40.0%
!!! CTTCAGATTTTTGGTCTTGG+AGG + chr7_2:82562778-82562797 Msa1082450:CDS 40.0%
AAGAATGCACACCTTGGATA+TGG - chr7_2:82562834-82562853 None:intergenic 40.0%
AATGTCACTACATGTGTTGG+TGG + chr7_2:82562979-82562998 Msa1082450:intron 40.0%
AGAGTTGAGAACTTCCTCAT+TGG - chr7_2:82563668-82563687 None:intergenic 40.0%
TGAGGAAGTTCTCAACTCTA+AGG + chr7_2:82563669-82563688 Msa1082450:intron 40.0%
ATTTCCCACACTAACACATG+TGG + chr7_2:82563770-82563789 Msa1082450:intron 40.0%
GTCAGTATTAGTATCGTGTC+TGG + chr7_2:82563842-82563861 Msa1082450:intron 40.0%
! TAAATTTGTGGTGGAGGAGA+GGG - chr7_2:82564048-82564067 None:intergenic 40.0%
TTGAGCTAAATTTGTGGTGG+AGG - chr7_2:82564054-82564073 None:intergenic 40.0%
TCGTTGAGCTAAATTTGTGG+TGG - chr7_2:82564057-82564076 None:intergenic 40.0%
TGGTCGTTGAGCTAAATTTG+TGG - chr7_2:82564060-82564079 None:intergenic 40.0%
! GTTTCGGTTTCGGATTCTTT+TGG - chr7_2:82564080-82564099 None:intergenic 40.0%
TGGGAGATCTTTGGTTGTTT+CGG - chr7_2:82564096-82564115 None:intergenic 40.0%
AGAAGTAACTGGGAGATCTT+TGG - chr7_2:82564105-82564124 None:intergenic 40.0%
AGATCTCCCAGTTACTTCTA+AGG + chr7_2:82564106-82564125 Msa1082450:CDS 40.0%
TTTAACTGTGCATAGCAGAG+TGG - chr7_2:82564380-82564399 None:intergenic 40.0%
! TGTTTCTGACTCAAGTTTGG+GGG - chr7_2:82562509-82562528 None:intergenic 40.0%
GATTGGAGAGAATGTTAGCA+AGG + chr7_2:82562737-82562756 Msa1082450:CDS 40.0%
GTTAGCAAGGTGAAGAATGA+AGG + chr7_2:82562750-82562769 Msa1082450:CDS 40.0%
CTCCAAGACCAAAAATCTGA+AGG - chr7_2:82562780-82562799 None:intergenic 40.0%
!!! CTTCAGATTTTTGGTCTTGG+AGG + chr7_2:82562778-82562797 Msa1082450:CDS 40.0%
AAGAATGCACACCTTGGATA+TGG - chr7_2:82562834-82562853 None:intergenic 40.0%
AATGTCACTACATGTGTTGG+TGG + chr7_2:82562979-82562998 Msa1082450:intron 40.0%
AGAGTTGAGAACTTCCTCAT+TGG - chr7_2:82563668-82563687 None:intergenic 40.0%
TGAGGAAGTTCTCAACTCTA+AGG + chr7_2:82563669-82563688 Msa1082450:intron 40.0%
ATTTCCCACACTAACACATG+TGG + chr7_2:82563770-82563789 Msa1082450:intron 40.0%
GTCAGTATTAGTATCGTGTC+TGG + chr7_2:82563842-82563861 Msa1082450:intron 40.0%
! TAAATTTGTGGTGGAGGAGA+GGG - chr7_2:82564048-82564067 None:intergenic 40.0%
TTGAGCTAAATTTGTGGTGG+AGG - chr7_2:82564054-82564073 None:intergenic 40.0%
TCGTTGAGCTAAATTTGTGG+TGG - chr7_2:82564057-82564076 None:intergenic 40.0%
TGGTCGTTGAGCTAAATTTG+TGG - chr7_2:82564060-82564079 None:intergenic 40.0%
! GTTTCGGTTTCGGATTCTTT+TGG - chr7_2:82564080-82564099 None:intergenic 40.0%
TGGGAGATCTTTGGTTGTTT+CGG - chr7_2:82564096-82564115 None:intergenic 40.0%
AGAAGTAACTGGGAGATCTT+TGG - chr7_2:82564105-82564124 None:intergenic 40.0%
AGATCTCCCAGTTACTTCTA+AGG + chr7_2:82564106-82564125 Msa1082450:CDS 40.0%
TTTAACTGTGCATAGCAGAG+TGG - chr7_2:82564380-82564399 None:intergenic 40.0%
AGAAAACGGTTGTGACTGTG+AGG + chr7_2:82562715-82562734 Msa1082450:CDS 45.0%
GGATATGGAGAGCCTTTGAT+TGG - chr7_2:82562819-82562838 None:intergenic 45.0%
TCAAAGGCTCTCCATATCCA+AGG + chr7_2:82562820-82562839 Msa1082450:CDS 45.0%
AGTGGAAAGAATGCACACCT+TGG - chr7_2:82562840-82562859 None:intergenic 45.0%
TGGTATGTCAGTGACAGTGT+CGG + chr7_2:82562999-82563018 Msa1082450:intron 45.0%
ACAGGTTCAGTGACTCTAGT+TGG - chr7_2:82563235-82563254 None:intergenic 45.0%
AACTAGAGTCACTGAACCTG+TGG + chr7_2:82563234-82563253 Msa1082450:intron 45.0%
CTTTGGATTCTCTTGCCACT+TGG - chr7_2:82563261-82563280 None:intergenic 45.0%
TTATAGGTGCAGCACATGCA+AGG + chr7_2:82563926-82563945 Msa1082450:CDS 45.0%
TATAGGTGCAGCACATGCAA+GGG + chr7_2:82563927-82563946 Msa1082450:CDS 45.0%
! CTAAATTTGTGGTGGAGGAG+AGG - chr7_2:82564049-82564068 None:intergenic 45.0%
ATCAATCAAGAAGGGGCAAC+AGG - chr7_2:82564518-82564537 None:intergenic 45.0%
AGAAAACGGTTGTGACTGTG+AGG + chr7_2:82562715-82562734 Msa1082450:CDS 45.0%
GGATATGGAGAGCCTTTGAT+TGG - chr7_2:82562819-82562838 None:intergenic 45.0%
TCAAAGGCTCTCCATATCCA+AGG + chr7_2:82562820-82562839 Msa1082450:CDS 45.0%
AGTGGAAAGAATGCACACCT+TGG - chr7_2:82562840-82562859 None:intergenic 45.0%
TGGTATGTCAGTGACAGTGT+CGG + chr7_2:82562999-82563018 Msa1082450:intron 45.0%
ACAGGTTCAGTGACTCTAGT+TGG - chr7_2:82563235-82563254 None:intergenic 45.0%
AACTAGAGTCACTGAACCTG+TGG + chr7_2:82563234-82563253 Msa1082450:intron 45.0%
CTTTGGATTCTCTTGCCACT+TGG - chr7_2:82563261-82563280 None:intergenic 45.0%
TTATAGGTGCAGCACATGCA+AGG + chr7_2:82563926-82563945 Msa1082450:CDS 45.0%
TATAGGTGCAGCACATGCAA+GGG + chr7_2:82563927-82563946 Msa1082450:CDS 45.0%
! CTAAATTTGTGGTGGAGGAG+AGG - chr7_2:82564049-82564068 None:intergenic 45.0%
ATCAATCAAGAAGGGGCAAC+AGG - chr7_2:82564518-82564537 None:intergenic 45.0%
TTCTGACTCAAGTTTGGGGG+AGG - chr7_2:82562506-82562525 None:intergenic 50.0%
ACGGTTGTGACTGTGAGGAT+TGG + chr7_2:82562720-82562739 Msa1082450:CDS 50.0%
GTTAGTGTCAGTGTCGTGCT+TGG - chr7_2:82562916-82562935 None:intergenic 50.0%
ATCTCCAACACACTGCTCAG+AGG + chr7_2:82564268-82564287 Msa1082450:CDS 50.0%
ATGTCCTCTGAGCAGTGTGT+TGG - chr7_2:82564275-82564294 None:intergenic 50.0%
TTCTGACTCAAGTTTGGGGG+AGG - chr7_2:82562506-82562525 None:intergenic 50.0%
ACGGTTGTGACTGTGAGGAT+TGG + chr7_2:82562720-82562739 Msa1082450:CDS 50.0%
GTTAGTGTCAGTGTCGTGCT+TGG - chr7_2:82562916-82562935 None:intergenic 50.0%
ATCTCCAACACACTGCTCAG+AGG + chr7_2:82564268-82564287 Msa1082450:CDS 50.0%
ATGTCCTCTGAGCAGTGTGT+TGG - chr7_2:82564275-82564294 None:intergenic 50.0%
AGAGTAGCTAGGGAGGGAGA+AGG - chr7_2:82562382-82562401 None:intergenic 55.0%
!! GTCAGTGACAGTGTCGGTGT+CGG + chr7_2:82563005-82563024 Msa1082450:intron 55.0%
CACTGAACCTGTGGTCCAAG+TGG + chr7_2:82563243-82563262 Msa1082450:intron 55.0%
! TCTCTTGCCACTTGGACCAC+AGG - chr7_2:82563253-82563272 None:intergenic 55.0%
AGAGTAGCTAGGGAGGGAGA+AGG - chr7_2:82562382-82562401 None:intergenic 55.0%
!! GTCAGTGACAGTGTCGGTGT+CGG + chr7_2:82563005-82563024 Msa1082450:intron 55.0%
CACTGAACCTGTGGTCCAAG+TGG + chr7_2:82563243-82563262 Msa1082450:intron 55.0%
! TCTCTTGCCACTTGGACCAC+AGG - chr7_2:82563253-82563272 None:intergenic 55.0%
!! GTGACAGTGTCGGTGTCGGT+CGG + chr7_2:82563009-82563028 Msa1082450:intron 60.0%
AGAGGGCTGTGGGATCTGGA+TGG - chr7_2:82564031-82564050 None:intergenic 60.0%
!! GTGACAGTGTCGGTGTCGGT+CGG + chr7_2:82563009-82563028 Msa1082450:intron 60.0%
AGAGGGCTGTGGGATCTGGA+TGG - chr7_2:82564031-82564050 None:intergenic 60.0%
!! TGTCGGTGTCGGTCGGACAC+CGG + chr7_2:82563016-82563035 Msa1082450:intron 65.0%
GAGGAGAGGGCTGTGGGATC+TGG - chr7_2:82564035-82564054 None:intergenic 65.0%
! GTGGTGGAGGAGAGGGCTGT+GGG - chr7_2:82564041-82564060 None:intergenic 65.0%
! TGTGGTGGAGGAGAGGGCTG+TGG - chr7_2:82564042-82564061 None:intergenic 65.0%
!! TGTCGGTGTCGGTCGGACAC+CGG + chr7_2:82563016-82563035 Msa1082450:intron 65.0%
GAGGAGAGGGCTGTGGGATC+TGG - chr7_2:82564035-82564054 None:intergenic 65.0%
! GTGGTGGAGGAGAGGGCTGT+GGG - chr7_2:82564041-82564060 None:intergenic 65.0%
! TGTGGTGGAGGAGAGGGCTG+TGG - chr7_2:82564042-82564061 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 82562347 82564614 82562347 ID=Msa1082450;Name=Msa1082450
chr7_2 mRNA 82562347 82564614 82562347 ID=Msa1082450-mRNA-1;Parent=Msa1082450;Name=Msa1082450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=143|1|1|1|1|1|3|82|276
chr7_2 exon 82562347 82562569 82562347 ID=Msa1082450-mRNA-1:exon:21385;Parent=Msa1082450-mRNA-1
chr7_2 exon 82562704 82562841 82562704 ID=Msa1082450-mRNA-1:exon:21386;Parent=Msa1082450-mRNA-1
chr7_2 exon 82563920 82564614 82563920 ID=Msa1082450-mRNA-1:exon:21387;Parent=Msa1082450-mRNA-1
chr7_2 five_prime_UTR 82562347 82562489 82562347 ID=Msa1082450-mRNA-1:five_prime_utr;Parent=Msa1082450-mRNA-1
chr7_2 CDS 82562490 82562569 82562490 ID=Msa1082450-mRNA-1:cds;Parent=Msa1082450-mRNA-1
chr7_2 CDS 82562704 82562841 82562704 ID=Msa1082450-mRNA-1:cds;Parent=Msa1082450-mRNA-1
chr7_2 CDS 82563920 82564532 82563920 ID=Msa1082450-mRNA-1:cds;Parent=Msa1082450-mRNA-1
chr7_2 three_prime_UTR 82564533 82564614 82564533 ID=Msa1082450-mRNA-1:three_prime_utr;Parent=Msa1082450-mRNA-1
Gene Sequence

>Msa1082450

ATGGACAGTAATGCCTCCCCCAAACTTGAGTCAGAAACATCTTTAGAGCTCAAACCAGAATCTCAAGTATCTAAGAAACGAAAAATGGTTGAGAAAACGGTTGTGACTGTGAGGATTGGAGAGAATGTTAGCAAGGTGAAGAATGAAGGACTTCCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGCTCTCCATATCCAAGGGGATATTATAGGTGCAGCACATGCAAGGGCTGTTCAGCCAAAAAACAAGTAGAGAGAAGCAGCATAGATGCTTCATTGCTCATCATCACCTATACTTCAACACATAACCATCCAGATCCCACAGCCCTCTCCTCCACCACAAATTTAGCTCAACGACCAAAAGAATCCGAAACCGAAACAACCAAAGATCTCCCAGTTACTTCTAAGGAAGAAAACCAAGAACAGAAACAGATAGATTCTAAGGAAGAAAACCAAGAACAGAAACAGATAGAAGAGGAAATTAACAGTAATAAGAGCACTGTGAGTAGTGATCAAGTTACAAATGAAGAAAATTTTCATTACTTACAATCTCCAACACACTGCTCAGAGGACATCATTATAGACCAAGAAGATCCTTTCAAAGTAAATATGGAAAAAAGCCACATTGACAAAATAGATCTTCTCTTAGAGGAAGAGCCACTCTGCTATGCACAGTTAAAGAATTTGTCAGCATCTAAATCAGAAGAACTTGATTTTTTCGATGAACTTGAGGAGTTACCTATGTCTTCGTCTATTTTACACTTTACGAGGAGCATTTTTTCTGATGAAAGGATTCCTGTTGCCCCTTCTTGA
Protein sequence

>Msa1082450

MDSNASPKLESETSLELKPESQVSKKRKMVEKTVVTVRIGENVSKVKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTCKGCSAKKQVERSSIDASLLIITYTSTHNHPDPTALSSTTNLAQRPKESETETTKDLPVTSKEENQEQKQIDSKEENQEQKQIEEEINSNKSTVSSDQVTNEENFHYLQSPTHCSEDIIIDQEDPFKVNMEKSHIDKIDLLLEEEPLCYAQLKNLSASKSEELDFFDELEELPMSSSILHFTRSIFSDERIPVAPS*