Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1084040 | XP_013450454.1 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 1.39e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1084040 | sp|Q9CPW7|ZMAT2_MOUSE | 59.398 | 133 | 48 | 3 | 8 | 137 | 3 | 132 | 9.82e-48 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1084040 | A0A072U456 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 6.64e-104 | 305 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1084040 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1084040 | MtrunA17_Chr7g0271741 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 1.28e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1084040 | AT3G05760.2 | 79.577 | 142 | 29 | 0 | 5 | 146 | 3 | 144 | 2.65e-83 | 241 |
| Msa1084040 | AT3G05760.1 | 79.577 | 142 | 29 | 0 | 5 | 146 | 3 | 144 | 1.21e-82 | 242 |
Find 36 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACTTGGATCATATTAA+TGG | 0.276389 | 7_2:-84314184 | Msa1084040:CDS |
| TGAGACAGAAAATTTGAATT+GGG | 0.295777 | 7_2:+84316281 | None:intergenic |
| TAAGCGATTCTAGAGAAAAT+TGG | 0.299955 | 7_2:+84316218 | None:intergenic |
| TTGAGACAGAAAATTTGAAT+TGG | 0.321223 | 7_2:+84316280 | None:intergenic |
| TCATAATCTCTATGTTTCAA+TGG | 0.398737 | 7_2:+84315826 | None:intergenic |
| AATTGAACTTACACTGTTGC+TGG | 0.398841 | 7_2:+84316156 | None:intergenic |
| CTTGCTCTGTAAAGCTTCCT+AGG | 0.401772 | 7_2:+84313333 | None:intergenic |
| TTCAATGGCTTCCTCTGCAC+TGG | 0.417126 | 7_2:+84315841 | None:intergenic |
| TCAAGTACCTGTTGGCTTAG+TGG | 0.422359 | 7_2:+84315423 | None:intergenic |
| TCCACAGATCAGAGAGCGTT+GGG | 0.434413 | 7_2:-84314061 | Msa1084040:intron |
| ATTCGGTTGAATTAGGCCGC+TGG | 0.437263 | 7_2:-84316060 | Msa1084040:intron |
| TGCTCGTGAGCGTGAGAGAC+AGG | 0.449139 | 7_2:-84315986 | Msa1084040:CDS |
| TGAACGTTCTTCTCTCAAAC+AGG | 0.469716 | 7_2:-84314023 | Msa1084040:intron |
| TTCGGTTGAATTAGGCCGCT+GGG | 0.484855 | 7_2:-84316059 | Msa1084040:intron |
| GAGACAGAAAATTTGAATTG+GGG | 0.499465 | 7_2:+84316282 | None:intergenic |
| AATGGCTTCCTCTGCACTGG+AGG | 0.506607 | 7_2:+84315844 | None:intergenic |
| GAAGGACTCAGCAAACTACT+TGG | 0.508744 | 7_2:-84314197 | Msa1084040:CDS |
| GGTTGCACCACTAAGCCAAC+AGG | 0.522528 | 7_2:-84315430 | Msa1084040:intron |
| GAAGAGAAAGCAAAACCTAA+AGG | 0.524374 | 7_2:-84315961 | Msa1084040:intron |
| GGTTTGAAAATCTGAAGAAA+CGG | 0.530251 | 7_2:-84313361 | Msa1084040:CDS |
| TGTTGGCTTAGTGGTGCAAC+CGG | 0.533524 | 7_2:+84315432 | None:intergenic |
| TTCCACAGATCAGAGAGCGT+TGG | 0.536771 | 7_2:-84314062 | Msa1084040:intron |
| GACAGAAAATTTGAATTGGG+GGG | 0.537305 | 7_2:+84316284 | None:intergenic |
| GTAGACCTTGAATCCCGCTT+GGG | 0.547442 | 7_2:-84315802 | Msa1084040:CDS |
| AGTAGACCTTGAATCCCGCT+TGG | 0.550337 | 7_2:-84315803 | Msa1084040:CDS |
| AGTTTGTGAGTGCGTGGTGA+AGG | 0.552418 | 7_2:-84314215 | Msa1084040:CDS |
| CTAGGAAGCTTTACAGAGCA+AGG | 0.559657 | 7_2:-84313332 | Msa1084040:CDS |
| CTGAAGAAACGGAAAGACCT+AGG | 0.564143 | 7_2:-84313350 | Msa1084040:CDS |
| AGACAGAAAATTTGAATTGG+GGG | 0.585578 | 7_2:+84316283 | None:intergenic |
| GATGAATGCAGGTTCAGGAA+CGG | 0.611812 | 7_2:-84313382 | Msa1084040:intron |
| GTAGAGGTCCTCCAGTGCAG+AGG | 0.618289 | 7_2:-84315852 | Msa1084040:CDS |
| CTGCTCAGTTTGTGAGTGCG+TGG | 0.632386 | 7_2:-84314221 | Msa1084040:CDS |
| GGAATTAGAATGATGTGTGA+AGG | 0.649546 | 7_2:+84316239 | None:intergenic |
| TCGGTTGAATTAGGCCGCTG+GGG | 0.650254 | 7_2:-84316058 | Msa1084040:intron |
| TGAACTTACACTGTTGCTGG+TGG | 0.666094 | 7_2:+84316159 | None:intergenic |
| GAATGTGTTGTCAACCCCAG+CGG | 0.671454 | 7_2:+84316044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAATTAATAATTTGATT+CGG | - | chr7_2:84313536-84313555 | Msa1084040:intron | 10.0% |
| !! | ACTTCATATTATATATATAT+AGG | - | chr7_2:84313739-84313758 | Msa1084040:intron | 10.0% |
| !! | TATTATATATATATAGGTAG+AGG | - | chr7_2:84313745-84313764 | Msa1084040:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | - | chr7_2:84314696-84314715 | Msa1084040:intron | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | - | chr7_2:84314697-84314716 | Msa1084040:intron | 15.0% |
| !!! | TTTTATGTTGGTTAAAAATA+TGG | - | chr7_2:84314861-84314880 | Msa1084040:intron | 15.0% |
| !!! | TTTATGTTGGTTAAAAATAT+GGG | - | chr7_2:84314862-84314881 | Msa1084040:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | - | chr7_2:84314696-84314715 | Msa1084040:intron | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | - | chr7_2:84314697-84314716 | Msa1084040:intron | 15.0% |
| !! | ATATACATTATTAAATCCAA+TGG | + | chr7_2:84315356-84315375 | None:intergenic | 15.0% |
| !!! | TGTTTATTTATTTCATTTTC+TGG | + | chr7_2:84315632-84315651 | None:intergenic | 15.0% |
| !!! | ATTTTGATATTTACAGATTT+GGG | - | chr7_2:84315662-84315681 | Msa1084040:intron | 15.0% |
| !! | AACTTACCTAATAATAATTA+GGG | + | chr7_2:84315908-84315927 | None:intergenic | 15.0% |
| !!! | ATTTTATGTTGTAGACTTTT+AGG | - | chr7_2:84314063-84314082 | Msa1084040:intron | 20.0% |
| !!! | AACTTTGCTTGTTAAAAATA+TGG | - | chr7_2:84314392-84314411 | Msa1084040:intron | 20.0% |
| !!! | ACTTTGCTTGTTAAAAATAT+GGG | - | chr7_2:84314393-84314412 | Msa1084040:intron | 20.0% |
| !! | ATATTGTAATGTCTAGAAAA+GGG | + | chr7_2:84314622-84314641 | None:intergenic | 20.0% |
| !! | AATATTGTAATGTCTAGAAA+AGG | + | chr7_2:84314623-84314642 | None:intergenic | 20.0% |
| !! | TCATAACTGTGTTATATATT+AGG | - | chr7_2:84314723-84314742 | Msa1084040:intron | 20.0% |
| !! | CATAACTGTGTTATATATTA+GGG | - | chr7_2:84314724-84314743 | Msa1084040:intron | 20.0% |
| !! | AACGAAAAGATTAATCATAT+AGG | + | chr7_2:84314816-84314835 | None:intergenic | 20.0% |
| !! | TTAACCAACATAAAATCTAA+AGG | + | chr7_2:84314856-84314875 | None:intergenic | 20.0% |
| !!! | TCTTTTTCCAAATTATATGT+GGG | - | chr7_2:84314985-84315004 | Msa1084040:intron | 20.0% |
| !! | ATCAAAAAGATTATCCATAT+AGG | + | chr7_2:84315316-84315335 | None:intergenic | 20.0% |
| !! | GATTTAATAATGTATATTGC+AGG | - | chr7_2:84315359-84315378 | Msa1084040:intron | 20.0% |
| !! | CAAATCTGTAAATATCAAAA+TGG | + | chr7_2:84315663-84315682 | None:intergenic | 20.0% |
| !!! | CATTTTGATATTTACAGATT+TGG | - | chr7_2:84315661-84315680 | Msa1084040:intron | 20.0% |
| !! | ACTTACCTAATAATAATTAG+GGG | + | chr7_2:84315907-84315926 | None:intergenic | 20.0% |
| !! | CAACTTACCTAATAATAATT+AGG | + | chr7_2:84315909-84315928 | None:intergenic | 20.0% |
| ! | TGAGACAGAAAATTTGAATT+GGG | + | chr7_2:84313335-84313354 | None:intergenic | 25.0% |
| ! | TTGAGACAGAAAATTTGAAT+TGG | + | chr7_2:84313336-84313355 | None:intergenic | 25.0% |
| ! | AACCATCGACAATAAATATT+GGG | + | chr7_2:84313490-84313509 | None:intergenic | 25.0% |
| ! | AAACCATCGACAATAAATAT+TGG | + | chr7_2:84313491-84313510 | None:intergenic | 25.0% |
| !!! | TAATTTGATTCGGTTGAATT+AGG | - | chr7_2:84313546-84313565 | Msa1084040:intron | 25.0% |
| !! | TGTGAAATTAGTTTACCTTT+AGG | + | chr7_2:84313670-84313689 | None:intergenic | 25.0% |
| ! | TCATAATCTCTATGTTTCAA+TGG | + | chr7_2:84313790-84313809 | None:intergenic | 25.0% |
| !! | AAAAACTCAGGTATGTTTTA+AGG | - | chr7_2:84313834-84313853 | Msa1084040:intron | 25.0% |
| !!! | TATGTTTGCTTTTTTGAGTT+TGG | - | chr7_2:84314026-84314045 | Msa1084040:CDS | 25.0% |
| ! | AATAAAAATCAAGTACCTGT+TGG | + | chr7_2:84314201-84314220 | None:intergenic | 25.0% |
| !!! | GTATTTGTGTACTTTGAAAT+TGG | - | chr7_2:84314223-84314242 | Msa1084040:CDS | 25.0% |
| !!! | ATAGCCTTTATTTCTTTTGT+TGG | - | chr7_2:84314313-84314332 | Msa1084040:intron | 25.0% |
| !!! | TAGCCTTTATTTCTTTTGTT+GGG | - | chr7_2:84314314-84314333 | Msa1084040:intron | 25.0% |
| !! | AGTACCTTTAGATTTTATGT+TGG | - | chr7_2:84314849-84314868 | Msa1084040:intron | 25.0% |
| !! | CTCTTTTTCCAAATTATATG+TGG | - | chr7_2:84314984-84315003 | Msa1084040:intron | 25.0% |
| ! | TATTGCAATGTCTAGAAAAA+GGG | + | chr7_2:84315121-84315140 | None:intergenic | 25.0% |
| ! | ATATTGCAATGTCTAGAAAA+AGG | + | chr7_2:84315122-84315141 | None:intergenic | 25.0% |
| ! | TCATAACTCTGTTATATATC+AGG | - | chr7_2:84315223-84315242 | Msa1084040:intron | 25.0% |
| ! | CATAACTCTGTTATATATCA+GGG | - | chr7_2:84315224-84315243 | Msa1084040:intron | 25.0% |
| ! | AACTACTTGGATCATATTAA+TGG | - | chr7_2:84315429-84315448 | Msa1084040:intron | 25.0% |
| ! | ATTAGAATTCATAGACTAGA+AGG | + | chr7_2:84316072-84316091 | None:intergenic | 25.0% |
| ! | TTCTAGTCTATGAATTCTAA+TGG | - | chr7_2:84316071-84316090 | Msa1084040:intron | 25.0% |
| AGACAGAAAATTTGAATTGG+GGG | + | chr7_2:84313333-84313352 | None:intergenic | 30.0% | |
| GAGACAGAAAATTTGAATTG+GGG | + | chr7_2:84313334-84313353 | None:intergenic | 30.0% | |
| ! | TAAGCGATTCTAGAGAAAAT+TGG | + | chr7_2:84313398-84313417 | None:intergenic | 30.0% |
| ATCCCAATATTTATTGTCGA+TGG | - | chr7_2:84313485-84313504 | Msa1084040:intron | 30.0% | |
| TAAATCCTTGACATTCACTT+AGG | + | chr7_2:84313940-84313959 | None:intergenic | 30.0% | |
| AGTGAATGTCAAGGATTTAT+AGG | - | chr7_2:84313941-84313960 | Msa1084040:intron | 30.0% | |
| !! | AGCCTTTATTTCTTTTGTTG+GGG | - | chr7_2:84314315-84314334 | Msa1084040:intron | 30.0% |
| ! | ACCGTTTTCCAAATTATATG+TGG | - | chr7_2:84314518-84314537 | Msa1084040:intron | 30.0% |
| CCCACATATAATTTGGAAAA+CGG | + | chr7_2:84314522-84314541 | None:intergenic | 30.0% | |
| ! | CCGTTTTCCAAATTATATGT+GGG | - | chr7_2:84314519-84314538 | Msa1084040:intron | 30.0% |
| TTGTGATTTCAATTGTCTTG+TGG | - | chr7_2:84314592-84314611 | Msa1084040:intron | 30.0% | |
| TTGGAAAAAGAGAACTTTCA+GGG | + | chr7_2:84314976-84314995 | None:intergenic | 30.0% | |
| TTTGGAAAAAGAGAACTTTC+AGG | + | chr7_2:84314977-84314996 | None:intergenic | 30.0% | |
| TTGTGATATTAATTGTCTCG+TGG | - | chr7_2:84315091-84315110 | Msa1084040:intron | 30.0% | |
| TAATAATGTATATTGCAGGC+TGG | - | chr7_2:84315363-84315382 | Msa1084040:intron | 30.0% | |
| ! | AGAAACGTATGTAGTCTTTT+TGG | - | chr7_2:84315454-84315473 | Msa1084040:intron | 30.0% |
| !! | ACCTGATATCACTTTTATAG+AGG | + | chr7_2:84315688-84315707 | None:intergenic | 30.0% |
| !!! | TCTTTTTATTTTCAGAACCC+AGG | + | chr7_2:84315711-84315730 | None:intergenic | 30.0% |
| ATAATAATTAGGGGAGAGAA+GGG | + | chr7_2:84315898-84315917 | None:intergenic | 30.0% | |
| AATAATAATTAGGGGAGAGA+AGG | + | chr7_2:84315899-84315918 | None:intergenic | 30.0% | |
| TCTCTCCCCTAATTATTATT+AGG | - | chr7_2:84315899-84315918 | Msa1084040:intron | 30.0% | |
| ATAGGTTTCTTCTCTAGTAT+GGG | - | chr7_2:84316015-84316034 | Msa1084040:CDS | 30.0% | |
| ! | ATGTCAAAGATAATGGCATA+TGG | + | chr7_2:84316097-84316116 | None:intergenic | 30.0% |
| TCAAGCAATGTCAAAGATAA+TGG | + | chr7_2:84316104-84316123 | None:intergenic | 30.0% | |
| AGAAACCAAATGACACATAA+TGG | + | chr7_2:84316168-84316187 | None:intergenic | 30.0% | |
| TAAATCTTTGTGATGAATGC+AGG | - | chr7_2:84316220-84316239 | Msa1084040:five_prime_UTR | 30.0% | |
| GGTTTGAAAATCTGAAGAAA+CGG | - | chr7_2:84316252-84316271 | Msa1084040:five_prime_UTR | 30.0% | |
| AATTTGAATTGGGGGGATTT+GGG | + | chr7_2:84313325-84313344 | None:intergenic | 35.0% | |
| AAATTTGAATTGGGGGGATT+TGG | + | chr7_2:84313326-84313345 | None:intergenic | 35.0% | |
| GACAGAAAATTTGAATTGGG+GGG | + | chr7_2:84313332-84313351 | None:intergenic | 35.0% | |
| GGAATTAGAATGATGTGTGA+AGG | + | chr7_2:84313377-84313396 | None:intergenic | 35.0% | |
| AATTGAACTTACACTGTTGC+TGG | + | chr7_2:84313460-84313479 | None:intergenic | 35.0% | |
| GAAGAGAAAGCAAAACCTAA+AGG | - | chr7_2:84313652-84313671 | Msa1084040:intron | 35.0% | |
| TGTCTGGATTACTTTCTTTC+AGG | - | chr7_2:84313860-84313879 | Msa1084040:intron | 35.0% | |
| TTAAGCTGTGTATCCAAACA+GGG | - | chr7_2:84313914-84313933 | Msa1084040:intron | 35.0% | |
| TGAACGGTATGAACAAATCT+TGG | + | chr7_2:84314115-84314134 | None:intergenic | 35.0% | |
| ! | GATATCGTGTCATATTTTGC+AGG | - | chr7_2:84314150-84314169 | Msa1084040:intron | 35.0% |
| ! | TATTTTGCAGGTTGTAACAC+CGG | - | chr7_2:84314162-84314181 | Msa1084040:intron | 35.0% |
| CTCCCCAACAAAAGAAATAA+AGG | + | chr7_2:84314320-84314339 | None:intergenic | 35.0% | |
| !! | CTTTATTTCTTTTGTTGGGG+AGG | - | chr7_2:84314318-84314337 | Msa1084040:intron | 35.0% |
| ! | CAAAGTTTTCCAAATACCTG+TGG | - | chr7_2:84314435-84314454 | Msa1084040:intron | 35.0% |
| TTCCAAATTATATGTGGGCA+AGG | - | chr7_2:84314524-84314543 | Msa1084040:intron | 35.0% | |
| ! | ATCACTTGCTTGATCTTTTC+GGG | + | chr7_2:84314550-84314569 | None:intergenic | 35.0% |
| ! | GATCACTTGCTTGATCTTTT+CGG | + | chr7_2:84314551-84314570 | None:intergenic | 35.0% |
| ATCACAAAAAACACAGCCAA+TGG | + | chr7_2:84314579-84314598 | None:intergenic | 35.0% | |
| CACAGGAATTTGGAAAACTT+TGG | + | chr7_2:84314906-84314925 | None:intergenic | 35.0% | |
| ! | CAAAGTTTTCCAAATTCCTG+TGG | - | chr7_2:84314904-84314923 | Msa1084040:intron | 35.0% |
| GATTATCCATATAGGATCCT+TGG | + | chr7_2:84315308-84315327 | None:intergenic | 35.0% | |
| AATAACCATGAGCAAAGTGA+CGG | + | chr7_2:84315522-84315541 | None:intergenic | 35.0% | |
| TCAAACAGGTACAGTGATAT+AGG | - | chr7_2:84315604-84315623 | Msa1084040:intron | 35.0% | |
| GCCTCTATAAAAGTGATATC+AGG | - | chr7_2:84315684-84315703 | Msa1084040:intron | 35.0% | |
| ATAAAAGTGATATCAGGTCC+TGG | - | chr7_2:84315690-84315709 | Msa1084040:intron | 35.0% | |
| TAAAAGTGATATCAGGTCCT+GGG | - | chr7_2:84315691-84315710 | Msa1084040:intron | 35.0% | |
| CATAGGTTTCTTCTCTAGTA+TGG | - | chr7_2:84316014-84316033 | Msa1084040:CDS | 35.0% | |
| ! | GTGTTCCATTATGTGTCATT+TGG | - | chr7_2:84316160-84316179 | Msa1084040:intron | 35.0% |
| GATTTATAACTGTCATGCAG+AGG | + | chr7_2:84316206-84316225 | None:intergenic | 35.0% | |
| ! | ATACCTGAGTTTTTCCCAAG+CGG | + | chr7_2:84313828-84313847 | None:intergenic | 40.0% |
| !!! | GTATGTTTTAAGGCTCTGTC+TGG | - | chr7_2:84313844-84313863 | Msa1084040:intron | 40.0% |
| GTTAAGCTGTGTATCCAAAC+AGG | - | chr7_2:84313913-84313932 | Msa1084040:intron | 40.0% | |
| !! | TGTTGTAGACTTTTAGGTCG+TGG | - | chr7_2:84314069-84314088 | Msa1084040:intron | 40.0% |
| !! | GTTGTAGACTTTTAGGTCGT+GGG | - | chr7_2:84314070-84314089 | Msa1084040:intron | 40.0% |
| !! | TTGTAGACTTTTAGGTCGTG+GGG | - | chr7_2:84314071-84314090 | Msa1084040:intron | 40.0% |
| !! | TGAACAAATCTTGGTGCTAG+TGG | + | chr7_2:84314106-84314125 | None:intergenic | 40.0% |
| AGGCTATCAAGAGAGTAAAG+AGG | + | chr7_2:84314300-84314319 | None:intergenic | 40.0% | |
| TGGAAAACGGTGAACTTTCA+TGG | + | chr7_2:84314509-84314528 | None:intergenic | 40.0% | |
| AGCAAGTGATCTTTCACCAT+TGG | - | chr7_2:84314560-84314579 | Msa1084040:intron | 40.0% | |
| !! | TGATTTTGACAACCTTGCGA+AGG | - | chr7_2:84314788-84314807 | Msa1084040:intron | 40.0% |
| ATCATATAGGATCCTTCGCA+AGG | + | chr7_2:84314803-84314822 | None:intergenic | 40.0% | |
| GGACTTGCCCACATATAATT+TGG | + | chr7_2:84314995-84315014 | None:intergenic | 40.0% | |
| !! | AAAGCTTTGGCTGTGTTTTG+TGG | - | chr7_2:84315061-84315080 | Msa1084040:intron | 40.0% |
| !! | AAGCTTTGGCTGTGTTTTGT+GGG | - | chr7_2:84315062-84315081 | Msa1084040:intron | 40.0% |
| !! | TGATTTTGACAACCTTGCCA+AGG | - | chr7_2:84315288-84315307 | Msa1084040:intron | 40.0% |
| TGCAACTTATGTAGCACCAT+TGG | - | chr7_2:84315337-84315356 | Msa1084040:intron | 40.0% | |
| TGAACGTTCTTCTCTCAAAC+AGG | - | chr7_2:84315590-84315609 | Msa1084040:intron | 40.0% | |
| TGGAATCAGTTGGGACATTA+GGG | + | chr7_2:84315763-84315782 | None:intergenic | 40.0% | |
| TTGCATCTCATAGTCTGATC+TGG | - | chr7_2:84315926-84315945 | Msa1084040:intron | 40.0% | |
| GAGAAGAAGCCTATAAGATG+AGG | + | chr7_2:84315970-84315989 | None:intergenic | 40.0% | |
| GAGAAGAAACCTATGAGATG+AGG | + | chr7_2:84316009-84316028 | None:intergenic | 40.0% | |
| TAATGGAACACATGCATGCA+TGG | + | chr7_2:84316151-84316170 | None:intergenic | 40.0% | |
| TTTGTGATGAATGCAGGTTC+AGG | - | chr7_2:84316226-84316245 | Msa1084040:five_prime_UTR | 40.0% | |
| TGAACTTACACTGTTGCTGG+TGG | + | chr7_2:84313457-84313476 | None:intergenic | 45.0% | |
| ! | TTTTTCCCAAGCGGGATTCA+AGG | + | chr7_2:84313819-84313838 | None:intergenic | 45.0% |
| ! | TACCTGAGTTTTTCCCAAGC+GGG | + | chr7_2:84313827-84313846 | None:intergenic | 45.0% |
| TCAGGCTATCTGCTGCTATA+AGG | - | chr7_2:84313878-84313897 | Msa1084040:intron | 45.0% | |
| ACATTCACTTAGGCCCTGTT+TGG | + | chr7_2:84313930-84313949 | None:intergenic | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr7_2:84313968-84313987 | Msa1084040:intron | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr7_2:84313969-84313988 | Msa1084040:intron | 45.0% | |
| TGATCCCACTTAGTGGGATA+TGG | - | chr7_2:84313975-84313994 | Msa1084040:intron | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | + | chr7_2:84313982-84314001 | None:intergenic | 45.0% | |
| !! | ACAAATCTTGGTGCTAGTGG+AGG | + | chr7_2:84314103-84314122 | None:intergenic | 45.0% |
| CTCTCATCAGTACAGCTGAA+CGG | + | chr7_2:84314131-84314150 | None:intergenic | 45.0% | |
| !! | TCAAGTACCTGTTGGCTTAG+TGG | + | chr7_2:84314193-84314212 | None:intergenic | 45.0% |
| !! | TTCTTTTGTTGGGGAGGTGT+TGG | - | chr7_2:84314324-84314343 | Msa1084040:intron | 45.0% |
| !!! | TCTTTTGTTGGGGAGGTGTT+GGG | - | chr7_2:84314325-84314344 | Msa1084040:intron | 45.0% |
| CTGACAAGTCCACAGGTATT+TGG | + | chr7_2:84314447-84314466 | None:intergenic | 45.0% | |
| AATACCTGTGGACTTGTCAG+TGG | - | chr7_2:84314447-84314466 | Msa1084040:intron | 45.0% | |
| ATACCTGTGGACTTGTCAGT+GGG | - | chr7_2:84314448-84314467 | Msa1084040:intron | 45.0% | |
| GGCCTTGCCCACATATAATT+TGG | + | chr7_2:84314529-84314548 | None:intergenic | 45.0% | |
| CCAAATTCCTGTGGACTTGT+CGG | - | chr7_2:84314913-84314932 | Msa1084040:intron | 45.0% | |
| !! | ATCACTCGCTTGGTCTTTTC+GGG | + | chr7_2:84315016-84315035 | None:intergenic | 45.0% |
| !! | GATCACTCGCTTGGTCTTTT+CGG | + | chr7_2:84315017-84315036 | None:intergenic | 45.0% |
| ATGGTGAAAGATCACTCGCT+TGG | + | chr7_2:84315026-84315045 | None:intergenic | 45.0% | |
| AGCGAGTGATCTTTCACCAT+TGG | - | chr7_2:84315026-84315045 | Msa1084040:intron | 45.0% | |
| CTTTGTGAATGCTCTGCCAA+TGG | + | chr7_2:84315045-84315064 | None:intergenic | 45.0% | |
| ! | GCAGAGCATTCACAAAGCTT+TGG | - | chr7_2:84315048-84315067 | Msa1084040:intron | 45.0% |
| ACCTTGCCAAGGATCCTATA+TGG | - | chr7_2:84315299-84315318 | Msa1084040:intron | 45.0% | |
| TCCATATAGGATCCTTGGCA+AGG | + | chr7_2:84315303-84315322 | None:intergenic | 45.0% | |
| GAAGGACTCAGCAAACTACT+TGG | - | chr7_2:84315416-84315435 | Msa1084040:intron | 45.0% | |
| ! | AATTGCCGTCACTTTGCTCA+TGG | - | chr7_2:84315514-84315533 | Msa1084040:intron | 45.0% |
| TGGGCACACTCTAATTGTCT+AGG | + | chr7_2:84315738-84315757 | None:intergenic | 45.0% | |
| CTGGAATCAGTTGGGACATT+AGG | + | chr7_2:84315764-84315783 | None:intergenic | 45.0% | |
| ATGGGATGAGAAGAGAGGAA+GGG | + | chr7_2:84315791-84315810 | None:intergenic | 45.0% | |
| TATGGATGGGATGAGAAGAG+AGG | + | chr7_2:84315796-84315815 | None:intergenic | 45.0% | |
| AGCTGAATGGTGCAGATTCA+AGG | + | chr7_2:84316041-84316060 | None:intergenic | 45.0% | |
| GAAGGCTGTCTTAAGCTGAA+TGG | + | chr7_2:84316054-84316073 | None:intergenic | 45.0% | |
| GATGAATGCAGGTTCAGGAA+CGG | - | chr7_2:84316231-84316250 | Msa1084040:five_prime_UTR | 45.0% | |
| CTGAAGAAACGGAAAGACCT+AGG | - | chr7_2:84316263-84316282 | Msa1084040:five_prime_UTR | 45.0% | |
| CTTGCTCTGTAAAGCTTCCT+AGG | + | chr7_2:84316283-84316302 | None:intergenic | 45.0% | |
| CTAGGAAGCTTTACAGAGCA+AGG | - | chr7_2:84316281-84316300 | Msa1084040:five_prime_UTR | 45.0% | |
| ATTCGGTTGAATTAGGCCGC+TGG | - | chr7_2:84313553-84313572 | Msa1084040:intron | 50.0% | |
| TTCGGTTGAATTAGGCCGCT+GGG | - | chr7_2:84313554-84313573 | Msa1084040:intron | 50.0% | |
| GAATGTGTTGTCAACCCCAG+CGG | + | chr7_2:84313572-84313591 | None:intergenic | 50.0% | |
| TTCAATGGCTTCCTCTGCAC+TGG | + | chr7_2:84313775-84313794 | None:intergenic | 50.0% | |
| AGTAGACCTTGAATCCCGCT+TGG | - | chr7_2:84313810-84313829 | Msa1084040:intron | 50.0% | |
| GTAGACCTTGAATCCCGCTT+GGG | - | chr7_2:84313811-84313830 | Msa1084040:intron | 50.0% | |
| ATCCCGCTTGGGAAAAACTC+AGG | - | chr7_2:84313822-84313841 | Msa1084040:intron | 50.0% | |
| CAGGGCCTAAGTGAATGTCA+AGG | - | chr7_2:84313932-84313951 | Msa1084040:intron | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | + | chr7_2:84313983-84314002 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | - | chr7_2:84313980-84313999 | Msa1084040:intron | 50.0% | |
| !! | TGTTGGCTTAGTGGTGCAAC+CGG | + | chr7_2:84314184-84314203 | None:intergenic | 50.0% |
| CCGACAAGTCCACAGGAATT+TGG | + | chr7_2:84314916-84314935 | None:intergenic | 50.0% | |
| AATTCCTGTGGACTTGTCGG+TGG | - | chr7_2:84314916-84314935 | Msa1084040:intron | 50.0% | |
| ATTCCTGTGGACTTGTCGGT+GGG | - | chr7_2:84314917-84314936 | Msa1084040:intron | 50.0% | |
| AGTTTGTGAGTGCGTGGTGA+AGG | - | chr7_2:84315398-84315417 | Msa1084040:intron | 50.0% | |
| ! | TTCCACAGATCAGAGAGCGT+TGG | - | chr7_2:84315551-84315570 | Msa1084040:intron | 50.0% |
| !! | TCCACAGATCAGAGAGCGTT+GGG | - | chr7_2:84315552-84315571 | Msa1084040:intron | 50.0% |
| CAGTTGGGACATTAGGGACT+GGG | + | chr7_2:84315757-84315776 | None:intergenic | 50.0% | |
| TCAGTTGGGACATTAGGGAC+TGG | + | chr7_2:84315758-84315777 | None:intergenic | 50.0% | |
| AGGGTAGGCTGGAATCAGTT+GGG | + | chr7_2:84315772-84315791 | None:intergenic | 50.0% | |
| AAGGGTAGGCTGGAATCAGT+TGG | + | chr7_2:84315773-84315792 | None:intergenic | 50.0% | |
| GATGAGAAGAGAGGAAGGGT+AGG | + | chr7_2:84315787-84315806 | None:intergenic | 50.0% | |
| GATGGGATGAGAAGAGAGGA+AGG | + | chr7_2:84315792-84315811 | None:intergenic | 50.0% | |
| ! | GAGGGAGAGAGCATATGGAT+GGG | + | chr7_2:84315809-84315828 | None:intergenic | 50.0% |
| ! | AGAGGGAGAGAGCATATGGA+TGG | + | chr7_2:84315810-84315829 | None:intergenic | 50.0% |
| ! | AGAGAGAGGGAGAGAGCATA+TGG | + | chr7_2:84315814-84315833 | None:intergenic | 50.0% |
| TAGAGTAGAGAGGACGTGTG+TGG | + | chr7_2:84315854-84315873 | None:intergenic | 50.0% | |
| TCCTCTCTACTCTAGCCTCT+AGG | - | chr7_2:84315860-84315879 | Msa1084040:intron | 50.0% | |
| TCCTAGAGGCTAGAGTAGAG+AGG | + | chr7_2:84315864-84315883 | None:intergenic | 50.0% | |
| TAAGATGAGGCCCAAGAGGA+GGG | + | chr7_2:84315957-84315976 | None:intergenic | 50.0% | |
| ATAAGATGAGGCCCAAGAGG+AGG | + | chr7_2:84315958-84315977 | None:intergenic | 50.0% | |
| CCTATAAGATGAGGCCCAAG+AGG | + | chr7_2:84315961-84315980 | None:intergenic | 50.0% | |
| CCTCTTGGGCCTCATCTTAT+AGG | - | chr7_2:84315958-84315977 | Msa1084040:intron | 50.0% | |
| TTCTTCTCTAGCCCTCCTCT+TGG | - | chr7_2:84315982-84316001 | Msa1084040:CDS | 50.0% | |
| TCTTCTCTAGCCCTCCTCTT+GGG | - | chr7_2:84315983-84316002 | Msa1084040:CDS | 50.0% | |
| TCGGTTGAATTAGGCCGCTG+GGG | - | chr7_2:84313555-84313574 | Msa1084040:intron | 55.0% | |
| AATGGCTTCCTCTGCACTGG+AGG | + | chr7_2:84313772-84313791 | None:intergenic | 55.0% | |
| GGTTGCACCACTAAGCCAAC+AGG | - | chr7_2:84314183-84314202 | Msa1084040:CDS | 55.0% | |
| !! | TGGGGAGGTGTTGGGACTTA+TGG | - | chr7_2:84314333-84314352 | Msa1084040:intron | 55.0% |
| !! | GGGGAGGTGTTGGGACTTAT+GGG | - | chr7_2:84314334-84314353 | Msa1084040:intron | 55.0% |
| GTACCCACTGACAAGTCCAC+AGG | + | chr7_2:84314454-84314473 | None:intergenic | 55.0% | |
| CTGCTCAGTTTGTGAGTGCG+TGG | - | chr7_2:84315392-84315411 | Msa1084040:intron | 55.0% | |
| AGAAGAGAGGAAGGGTAGGC+TGG | + | chr7_2:84315783-84315802 | None:intergenic | 55.0% | |
| TGCACTGTGGGAGAGAGAGA+GGG | + | chr7_2:84315827-84315846 | None:intergenic | 55.0% | |
| GGGTGTGACTCGTTTCCTAG+AGG | + | chr7_2:84315878-84315897 | None:intergenic | 55.0% | |
| AAGATGAGGCCCAAGAGGAG+GGG | + | chr7_2:84315956-84315975 | None:intergenic | 55.0% | |
| TGAGATGAGGCCCAAGAGGA+GGG | + | chr7_2:84315996-84316015 | None:intergenic | 55.0% | |
| ATGAGATGAGGCCCAAGAGG+AGG | + | chr7_2:84315997-84316016 | None:intergenic | 55.0% | |
| CCTATGAGATGAGGCCCAAG+AGG | + | chr7_2:84316000-84316019 | None:intergenic | 55.0% | |
| CCTCTTGGGCCTCATCTCAT+AGG | - | chr7_2:84315997-84316016 | Msa1084040:CDS | 55.0% | |
| TGCTCGTGAGCGTGAGAGAC+AGG | - | chr7_2:84313627-84313646 | Msa1084040:intron | 60.0% | |
| GTAGAGGTCCTCCAGTGCAG+AGG | - | chr7_2:84313761-84313780 | Msa1084040:intron | 60.0% | |
| GTACCCACCGACAAGTCCAC+AGG | + | chr7_2:84314923-84314942 | None:intergenic | 60.0% | |
| GCCCAACGCTCTCTGATCTG+TGG | + | chr7_2:84315556-84315575 | None:intergenic | 60.0% | |
| GTGCACTGTGGGAGAGAGAG+AGG | + | chr7_2:84315828-84315847 | None:intergenic | 60.0% | |
| GTGTGTGGCAGGTGCACTGT+GGG | + | chr7_2:84315839-84315858 | None:intergenic | 60.0% | |
| GTAGAGAGGACGTGTGTGGC+AGG | + | chr7_2:84315850-84315869 | None:intergenic | 60.0% | |
| CGTGTGTGGCAGGTGCACTG+TGG | + | chr7_2:84315840-84315859 | None:intergenic | 65.0% | |
| ATCTGGCGCACCCCTCCTCT+TGG | - | chr7_2:84315943-84315962 | Msa1084040:intron | 65.0% | |
| TCTGGCGCACCCCTCCTCTT+GGG | - | chr7_2:84315944-84315963 | Msa1084040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 84313322 | 84316313 | 84313322 | ID=Msa1084040;Name=Msa1084040 |
| chr7_2 | mRNA | 84313322 | 84316313 | 84313322 | ID=Msa1084040-mRNA-1;Parent=Msa1084040;Name=Msa1084040-mRNA-1;_AED=0.15;_eAED=0.15;_QI=122|1|0.85|1|1|1|7|0|149 |
| chr7_2 | exon | 84313322 | 84313393 | 84313322 | ID=Msa1084040-mRNA-1:exon:22507;Parent=Msa1084040-mRNA-1 |
| chr7_2 | exon | 84314024 | 84314076 | 84314024 | ID=Msa1084040-mRNA-1:exon:22506;Parent=Msa1084040-mRNA-1 |
| chr7_2 | exon | 84314176 | 84314254 | 84314176 | ID=Msa1084040-mRNA-1:exon:22505;Parent=Msa1084040-mRNA-1 |
| chr7_2 | exon | 84315431 | 84315463 | 84315431 | ID=Msa1084040-mRNA-1:exon:22504;Parent=Msa1084040-mRNA-1 |
| chr7_2 | exon | 84315792 | 84315874 | 84315792 | ID=Msa1084040-mRNA-1:exon:22503;Parent=Msa1084040-mRNA-1 |
| chr7_2 | exon | 84315962 | 84316067 | 84315962 | ID=Msa1084040-mRNA-1:exon:22502;Parent=Msa1084040-mRNA-1 |
| chr7_2 | exon | 84316168 | 84316313 | 84316168 | ID=Msa1084040-mRNA-1:exon:22501;Parent=Msa1084040-mRNA-1 |
| chr7_2 | five_prime_UTR | 84316192 | 84316313 | 84316192 | ID=Msa1084040-mRNA-1:five_prime_utr;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84316168 | 84316191 | 84316168 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84315962 | 84316067 | 84315962 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84315792 | 84315874 | 84315792 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84315431 | 84315463 | 84315431 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84314176 | 84314254 | 84314176 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84314024 | 84314076 | 84314024 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| chr7_2 | CDS | 84313322 | 84313393 | 84313322 | ID=Msa1084040-mRNA-1:cds;Parent=Msa1084040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
