Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085360 | KEH21040.1 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 5.62e-151 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085360 | sp|Q500W4|PLI2C_ARATH | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.73e-78 | 236 |
| Msa1085360 | sp|Q500W4|PLI2C_ARATH | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.33e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085360 | A0A072U5A9 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 2.68e-151 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1085360 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085360 | MtrunA17_Chr8g0386501 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 5.17e-155 | 427 |
| Msa1085360 | MtrunA17_Chr3g0113051 | 60.656 | 183 | 64 | 1 | 1 | 175 | 1 | 183 | 2.74e-76 | 228 |
| Msa1085360 | MtrunA17_Chr8g0349391 | 59.538 | 173 | 68 | 1 | 1 | 171 | 1 | 173 | 8.41e-74 | 222 |
| Msa1085360 | MtrunA17_Chr7g0247111 | 53.302 | 212 | 95 | 2 | 1 | 208 | 1 | 212 | 8.41e-73 | 219 |
| Msa1085360 | MtrunA17_Chr1g0152431 | 55.367 | 177 | 67 | 4 | 1 | 167 | 1 | 175 | 1.68e-61 | 190 |
| Msa1085360 | MtrunA17_Chr4g0059371 | 52.000 | 175 | 77 | 2 | 2 | 169 | 3 | 177 | 4.95e-61 | 188 |
| Msa1085360 | MtrunA17_Chr4g0059371 | 50.704 | 71 | 35 | 0 | 93 | 163 | 2 | 72 | 3.28e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085360 | AT3G61230.1 | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.77e-79 | 236 |
| Msa1085360 | AT3G61230.1 | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.35e-21 | 89.0 |
| Msa1085360 | AT2G45800.1 | 56.250 | 208 | 85 | 3 | 1 | 202 | 1 | 208 | 1.80e-77 | 232 |
| Msa1085360 | AT2G39900.1 | 61.538 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 4.22e-77 | 230 |
| Msa1085360 | AT3G55770.3 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1085360 | AT3G55770.5 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1085360 | AT3G55770.2 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1085360 | AT3G55770.1 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa1085360 | AT1G01780.1 | 53.659 | 205 | 88 | 2 | 1 | 203 | 1 | 200 | 3.38e-74 | 223 |
| Msa1085360 | AT3G55770.7 | 48.927 | 233 | 79 | 2 | 1 | 193 | 1 | 233 | 5.59e-68 | 208 |
| Msa1085360 | AT1G10200.1 | 54.802 | 177 | 68 | 4 | 1 | 167 | 1 | 175 | 1.68e-61 | 190 |
| Msa1085360 | AT2G45800.2 | 54.217 | 166 | 70 | 3 | 43 | 202 | 12 | 177 | 3.71e-53 | 169 |
| Msa1085360 | AT2G45800.2 | 48.438 | 64 | 33 | 0 | 3 | 66 | 68 | 131 | 5.50e-15 | 70.9 |
| Msa1085360 | AT3G55770.4 | 53.906 | 128 | 53 | 1 | 1 | 122 | 1 | 128 | 4.31e-42 | 139 |
| Msa1085360 | AT3G55770.4 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 3.04e-23 | 91.3 |
| Msa1085360 | AT3G55770.6 | 54.098 | 122 | 50 | 1 | 1 | 116 | 1 | 122 | 4.15e-39 | 131 |
| Msa1085360 | AT3G55770.6 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.28e-23 | 91.3 |
| Msa1085360 | AT1G10200.2 | 51.145 | 131 | 54 | 3 | 46 | 167 | 4 | 133 | 1.36e-37 | 128 |
| Msa1085360 | AT1G10200.2 | 45.455 | 66 | 36 | 0 | 3 | 68 | 61 | 126 | 7.70e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | 7_2:+86013385 | Msa1085360:CDS |
| ATTACCCGTCTGGGGTTTCT+TGG | 0.257758 | 7_2:-86012628 | None:intergenic |
| AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | 7_2:+86012917 | Msa1085360:CDS |
| TTTACCACAAGTCATGCTTT+AGG | 0.384207 | 7_2:+86013332 | Msa1085360:CDS |
| CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | 7_2:-86012000 | None:intergenic |
| AAAGGATCTTATTACCCGTC+TGG | 0.392398 | 7_2:-86012638 | None:intergenic |
| ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | 7_2:-86011999 | None:intergenic |
| TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | 7_2:-86013541 | None:intergenic |
| TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | 7_2:+86013433 | Msa1085360:CDS |
| AAGGATCTTATTACCCGTCT+GGG | 0.445643 | 7_2:-86012637 | None:intergenic |
| ACCCGTCTGGGGTTTCTTGG+AGG | 0.447284 | 7_2:-86012625 | None:intergenic |
| AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | 7_2:-86012910 | None:intergenic |
| GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | 7_2:-86012902 | None:intergenic |
| AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | 7_2:+86012769 | Msa1085360:intron |
| AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | 7_2:+86012918 | Msa1085360:CDS |
| TCAATAACCATGTCTTTCAC+TGG | 0.477166 | 7_2:+86011974 | None:intergenic |
| CAAGAAAACTGTATATCCAT+TGG | 0.479463 | 7_2:+86012964 | Msa1085360:CDS |
| AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | 7_2:-86012911 | None:intergenic |
| AACTGTATATCCATTGGAAA+AGG | 0.494668 | 7_2:+86012970 | Msa1085360:CDS |
| TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | 7_2:-86013382 | None:intergenic |
| CTGGGGTTTCTTGGAGGCGA+AGG | 0.523891 | 7_2:-86012619 | None:intergenic |
| CTTAAACAACTGAGAAAAGT+GGG | 0.527258 | 7_2:-86013425 | None:intergenic |
| GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | 7_2:-86013389 | None:intergenic |
| GTTGATACGTTATCTGCTGA+TGG | 0.547689 | 7_2:+86012040 | Msa1085360:CDS |
| AGAATACACACCAGTTCACT+AGG | 0.547764 | 7_2:-86012779 | None:intergenic |
| CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | 7_2:-86013426 | None:intergenic |
| TCATGCTTTAGGTGCACACA+TGG | 0.562402 | 7_2:+86013343 | Msa1085360:CDS |
| TACACCTCTTGTGTAACAGC+AGG | 0.567186 | 7_2:-86013583 | None:intergenic |
| CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | 7_2:-86013381 | None:intergenic |
| TTGTGATAAAACTGTTCACT+TGG | 0.580761 | 7_2:+86012018 | Msa1085360:CDS |
| GCCTCCAAGAAACCCCAGAC+GGG | 0.596184 | 7_2:+86012624 | Msa1085360:CDS |
| TGATCCTGCTGTTACACAAG+AGG | 0.603788 | 7_2:+86013579 | Msa1085360:CDS |
| AGACACAGAGACAGAGACAA+AGG | 0.606794 | 7_2:+86013549 | Msa1085360:CDS |
| CGCCTCCAAGAAACCCCAGA+CGG | 0.608247 | 7_2:+86012623 | Msa1085360:CDS |
| AGTAACTATCAATCAATCGA+AGG | 0.610154 | 7_2:+86012552 | Msa1085360:CDS |
| TTCAGATGTAATCAATGCAA+TGG | 0.611041 | 7_2:+86012085 | Msa1085360:CDS |
| CGTATGTATATACCGCGAGA+AGG | 0.635292 | 7_2:-86012108 | None:intergenic |
| TTATGACAGTTGACAGTGGA+AGG | 0.635630 | 7_2:+86013304 | Msa1085360:intron |
| AGGATCTTATTACCCGTCTG+GGG | 0.640198 | 7_2:-86012636 | None:intergenic |
| GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | 7_2:-86012909 | None:intergenic |
| TGGAACCCAACAGAAATGCA+AGG | 0.666590 | 7_2:+86011994 | Msa1085360:CDS |
| TGCTTTAGGTGCACACATGG+AGG | 0.676247 | 7_2:+86013346 | Msa1085360:CDS |
| CTGTTTATGACAGTTGACAG+TGG | 0.680767 | 7_2:+86013300 | Msa1085360:intron |
| TTAAACAACTGAGAAAAGTG+GGG | 0.688189 | 7_2:-86013424 | None:intergenic |
| TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | 7_2:-86011981 | None:intergenic |
| TCAATGCAATGGCCTTCTCG+CGG | 0.702963 | 7_2:+86012096 | Msa1085360:CDS |
| TGCACCTAAAGCATGACTTG+TGG | 0.763367 | 7_2:-86013336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATCAAAGA+TGG | + | chr7_2:86012195-86012214 | Msa1085360:intron | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | + | chr7_2:86012196-86012215 | Msa1085360:intron | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | + | chr7_2:86012335-86012354 | Msa1085360:intron | 10.0% |
| !! | AAATTCCTATTATTATAATT+TGG | - | chr7_2:86012689-86012708 | None:intergenic | 10.0% |
| !! | ATATATATATATATCAAAGA+TGG | + | chr7_2:86012195-86012214 | Msa1085360:intron | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | + | chr7_2:86012196-86012215 | Msa1085360:intron | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | + | chr7_2:86012335-86012354 | Msa1085360:intron | 10.0% |
| !! | AAATTCCTATTATTATAATT+TGG | - | chr7_2:86012689-86012708 | None:intergenic | 10.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | - | chr7_2:86012468-86012487 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | + | chr7_2:86012509-86012528 | Msa1085360:intron | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | + | chr7_2:86012681-86012700 | Msa1085360:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | - | chr7_2:86013085-86013104 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | - | chr7_2:86013086-86013105 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | - | chr7_2:86012468-86012487 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | + | chr7_2:86012509-86012528 | Msa1085360:intron | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | + | chr7_2:86012681-86012700 | Msa1085360:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | - | chr7_2:86013085-86013104 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | - | chr7_2:86013086-86013105 | None:intergenic | 15.0% |
| !! | TATATATAGAACATAAACGA+GGG | - | chr7_2:86012182-86012201 | None:intergenic | 20.0% |
| !! | ATATATATAGAACATAAACG+AGG | - | chr7_2:86012183-86012202 | None:intergenic | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | + | chr7_2:86012249-86012268 | Msa1085360:intron | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | + | chr7_2:86012250-86012269 | Msa1085360:intron | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | + | chr7_2:86012982-86013001 | Msa1085360:intron | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | - | chr7_2:86013029-86013048 | None:intergenic | 20.0% |
| !! | TATATATAGAACATAAACGA+GGG | - | chr7_2:86012182-86012201 | None:intergenic | 20.0% |
| !! | ATATATATAGAACATAAACG+AGG | - | chr7_2:86012183-86012202 | None:intergenic | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | + | chr7_2:86012249-86012268 | Msa1085360:intron | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | + | chr7_2:86012250-86012269 | Msa1085360:intron | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | + | chr7_2:86012982-86013001 | Msa1085360:intron | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | - | chr7_2:86013029-86013048 | None:intergenic | 20.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | + | chr7_2:86012128-86012147 | Msa1085360:intron | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | + | chr7_2:86012155-86012174 | Msa1085360:intron | 25.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | - | chr7_2:86012159-86012178 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | - | chr7_2:86012983-86013002 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | + | chr7_2:86012981-86013000 | Msa1085360:intron | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | + | chr7_2:86013042-86013061 | Msa1085360:intron | 25.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | + | chr7_2:86012128-86012147 | Msa1085360:intron | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | + | chr7_2:86012155-86012174 | Msa1085360:intron | 25.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | - | chr7_2:86012159-86012178 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | - | chr7_2:86012983-86013002 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | + | chr7_2:86012981-86013000 | Msa1085360:intron | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | + | chr7_2:86013042-86013061 | Msa1085360:intron | 25.0% |
| TTGTGATAAAACTGTTCACT+TGG | + | chr7_2:86012018-86012037 | Msa1085360:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | + | chr7_2:86012085-86012104 | Msa1085360:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | + | chr7_2:86012396-86012415 | Msa1085360:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | + | chr7_2:86012397-86012416 | Msa1085360:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | + | chr7_2:86012425-86012444 | Msa1085360:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | - | chr7_2:86012451-86012470 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | + | chr7_2:86012552-86012571 | Msa1085360:CDS | 30.0% | |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | + | chr7_2:86012701-86012720 | Msa1085360:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | + | chr7_2:86012702-86012721 | Msa1085360:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | + | chr7_2:86012703-86012722 | Msa1085360:intron | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | + | chr7_2:86012752-86012771 | Msa1085360:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | + | chr7_2:86012886-86012905 | Msa1085360:intron | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | + | chr7_2:86012964-86012983 | Msa1085360:CDS | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | + | chr7_2:86012970-86012989 | Msa1085360:CDS | 30.0% | |
| TATATATACTCCAACAATGC+TGG | + | chr7_2:86013098-86013117 | Msa1085360:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | + | chr7_2:86013227-86013246 | Msa1085360:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | - | chr7_2:86013427-86013446 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | - | chr7_2:86013428-86013447 | None:intergenic | 30.0% | |
| TTGTGATAAAACTGTTCACT+TGG | + | chr7_2:86012018-86012037 | Msa1085360:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | + | chr7_2:86012085-86012104 | Msa1085360:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | + | chr7_2:86012396-86012415 | Msa1085360:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | + | chr7_2:86012397-86012416 | Msa1085360:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | + | chr7_2:86012425-86012444 | Msa1085360:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | - | chr7_2:86012451-86012470 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | + | chr7_2:86012552-86012571 | Msa1085360:CDS | 30.0% | |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | + | chr7_2:86012701-86012720 | Msa1085360:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | + | chr7_2:86012702-86012721 | Msa1085360:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | + | chr7_2:86012703-86012722 | Msa1085360:intron | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | + | chr7_2:86012752-86012771 | Msa1085360:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | + | chr7_2:86012886-86012905 | Msa1085360:intron | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | + | chr7_2:86012964-86012983 | Msa1085360:CDS | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | + | chr7_2:86012970-86012989 | Msa1085360:CDS | 30.0% | |
| TATATATACTCCAACAATGC+TGG | + | chr7_2:86013098-86013117 | Msa1085360:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | + | chr7_2:86013227-86013246 | Msa1085360:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | - | chr7_2:86013427-86013446 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | - | chr7_2:86013428-86013447 | None:intergenic | 30.0% | |
| ATGGGTCAAATTGCATCTAA+AGG | + | chr7_2:86012214-86012233 | Msa1085360:intron | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | + | chr7_2:86012370-86012389 | Msa1085360:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | + | chr7_2:86012885-86012904 | Msa1085360:intron | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | - | chr7_2:86012913-86012932 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | - | chr7_2:86012914-86012933 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | + | chr7_2:86012917-86012936 | Msa1085360:CDS | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | + | chr7_2:86012918-86012937 | Msa1085360:CDS | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | - | chr7_2:86013159-86013178 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | + | chr7_2:86013158-86013177 | Msa1085360:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | - | chr7_2:86013174-86013193 | None:intergenic | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | - | chr7_2:86013180-86013199 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | + | chr7_2:86013332-86013351 | Msa1085360:CDS | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | - | chr7_2:86013429-86013448 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | + | chr7_2:86013426-86013445 | Msa1085360:CDS | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | + | chr7_2:86013433-86013452 | Msa1085360:CDS | 35.0% |
| ATGGGTCAAATTGCATCTAA+AGG | + | chr7_2:86012214-86012233 | Msa1085360:intron | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | + | chr7_2:86012370-86012389 | Msa1085360:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | + | chr7_2:86012885-86012904 | Msa1085360:intron | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | - | chr7_2:86012913-86012932 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | - | chr7_2:86012914-86012933 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | + | chr7_2:86012917-86012936 | Msa1085360:CDS | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | + | chr7_2:86012918-86012937 | Msa1085360:CDS | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | - | chr7_2:86013159-86013178 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | + | chr7_2:86013158-86013177 | Msa1085360:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | - | chr7_2:86013174-86013193 | None:intergenic | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | - | chr7_2:86013180-86013199 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | + | chr7_2:86013332-86013351 | Msa1085360:CDS | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | - | chr7_2:86013429-86013448 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | + | chr7_2:86013426-86013445 | Msa1085360:CDS | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | + | chr7_2:86013433-86013452 | Msa1085360:CDS | 35.0% |
| ACAAGCCTTGCATTTCTGTT+GGG | - | chr7_2:86012002-86012021 | None:intergenic | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | + | chr7_2:86012040-86012059 | Msa1085360:CDS | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | - | chr7_2:86012640-86012659 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | - | chr7_2:86012641-86012660 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | - | chr7_2:86012782-86012801 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | - | chr7_2:86012912-86012931 | None:intergenic | 40.0% |
| TACTCCAACAATGCTGGATT+TGG | + | chr7_2:86013104-86013123 | Msa1085360:intron | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | - | chr7_2:86013173-86013192 | None:intergenic | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | + | chr7_2:86013176-86013195 | Msa1085360:intron | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | + | chr7_2:86013300-86013319 | Msa1085360:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | + | chr7_2:86013304-86013323 | Msa1085360:intron | 40.0% | |
| ACAAGCCTTGCATTTCTGTT+GGG | - | chr7_2:86012002-86012021 | None:intergenic | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | + | chr7_2:86012040-86012059 | Msa1085360:CDS | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | - | chr7_2:86012640-86012659 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | - | chr7_2:86012641-86012660 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | - | chr7_2:86012782-86012801 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | - | chr7_2:86012912-86012931 | None:intergenic | 40.0% |
| TACTCCAACAATGCTGGATT+TGG | + | chr7_2:86013104-86013123 | Msa1085360:intron | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | - | chr7_2:86013173-86013192 | None:intergenic | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | + | chr7_2:86013176-86013195 | Msa1085360:intron | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | + | chr7_2:86013300-86013319 | Msa1085360:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | + | chr7_2:86013304-86013323 | Msa1085360:intron | 40.0% | |
| TGGAACCCAACAGAAATGCA+AGG | + | chr7_2:86011994-86012013 | Msa1085360:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | - | chr7_2:86012003-86012022 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | - | chr7_2:86012111-86012130 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | - | chr7_2:86012639-86012658 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | + | chr7_2:86013058-86013077 | Msa1085360:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | + | chr7_2:86013059-86013078 | Msa1085360:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | - | chr7_2:86013069-86013088 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | - | chr7_2:86013111-86013130 | None:intergenic | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | - | chr7_2:86013339-86013358 | None:intergenic | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | + | chr7_2:86013343-86013362 | Msa1085360:CDS | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | - | chr7_2:86013384-86013403 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | - | chr7_2:86013385-86013404 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | + | chr7_2:86013385-86013404 | Msa1085360:CDS | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | - | chr7_2:86013392-86013411 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | + | chr7_2:86013549-86013568 | Msa1085360:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | + | chr7_2:86013579-86013598 | Msa1085360:CDS | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | - | chr7_2:86013586-86013605 | None:intergenic | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | + | chr7_2:86011994-86012013 | Msa1085360:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | - | chr7_2:86012003-86012022 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | - | chr7_2:86012111-86012130 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | - | chr7_2:86012639-86012658 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | + | chr7_2:86013058-86013077 | Msa1085360:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | + | chr7_2:86013059-86013078 | Msa1085360:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | - | chr7_2:86013069-86013088 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | - | chr7_2:86013111-86013130 | None:intergenic | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | - | chr7_2:86013339-86013358 | None:intergenic | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | + | chr7_2:86013343-86013362 | Msa1085360:CDS | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | - | chr7_2:86013384-86013403 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | - | chr7_2:86013385-86013404 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | + | chr7_2:86013385-86013404 | Msa1085360:CDS | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | - | chr7_2:86013392-86013411 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | + | chr7_2:86013549-86013568 | Msa1085360:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | + | chr7_2:86013579-86013598 | Msa1085360:CDS | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | - | chr7_2:86013586-86013605 | None:intergenic | 45.0% | |
| !! | AAGTATATAAAAAAAAAAAA+AGG | - | chr7_2:86012659-86012678 | None:intergenic | 5.0% |
| !! | AAGTATATAAAAAAAAAAAA+AGG | - | chr7_2:86012659-86012678 | None:intergenic | 5.0% |
| TCAATGCAATGGCCTTCTCG+CGG | + | chr7_2:86012096-86012115 | Msa1085360:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | + | chr7_2:86012593-86012612 | Msa1085360:CDS | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | - | chr7_2:86012631-86012650 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | + | chr7_2:86012769-86012788 | Msa1085360:intron | 50.0% | |
| ! | TGCTTTAGGTGCACACATGG+AGG | + | chr7_2:86013346-86013365 | Msa1085360:CDS | 50.0% |
| TCTGTCTCTGTGTCTGATGC+TGG | - | chr7_2:86013544-86013563 | None:intergenic | 50.0% | |
| TCAATGCAATGGCCTTCTCG+CGG | + | chr7_2:86012096-86012115 | Msa1085360:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | + | chr7_2:86012593-86012612 | Msa1085360:CDS | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | - | chr7_2:86012631-86012650 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | + | chr7_2:86012769-86012788 | Msa1085360:intron | 50.0% | |
| ! | TGCTTTAGGTGCACACATGG+AGG | + | chr7_2:86013346-86013365 | Msa1085360:CDS | 50.0% |
| TCTGTCTCTGTGTCTGATGC+TGG | - | chr7_2:86013544-86013563 | None:intergenic | 50.0% | |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | - | chr7_2:86012905-86012924 | None:intergenic | 55.0% |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | - | chr7_2:86012905-86012924 | None:intergenic | 55.0% |
| CTGGGGTTTCTTGGAGGCGA+AGG | - | chr7_2:86012622-86012641 | None:intergenic | 60.0% | |
| CGCCTCCAAGAAACCCCAGA+CGG | + | chr7_2:86012623-86012642 | Msa1085360:CDS | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | + | chr7_2:86012624-86012643 | Msa1085360:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | - | chr7_2:86012628-86012647 | None:intergenic | 60.0% |
| CTGGGGTTTCTTGGAGGCGA+AGG | - | chr7_2:86012622-86012641 | None:intergenic | 60.0% | |
| CGCCTCCAAGAAACCCCAGA+CGG | + | chr7_2:86012623-86012642 | Msa1085360:CDS | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | + | chr7_2:86012624-86012643 | Msa1085360:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | - | chr7_2:86012628-86012647 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 86011983 | 86013606 | 86011983 | ID=Msa1085360;Name=Msa1085360 |
| chr7_2 | mRNA | 86011983 | 86013606 | 86011983 | ID=Msa1085360-mRNA-1;Parent=Msa1085360;Name=Msa1085360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|211 |
| chr7_2 | exon | 86011983 | 86012117 | 86011983 | ID=Msa1085360-mRNA-1:exon:23265;Parent=Msa1085360-mRNA-1 |
| chr7_2 | exon | 86012549 | 86012645 | 86012549 | ID=Msa1085360-mRNA-1:exon:23266;Parent=Msa1085360-mRNA-1 |
| chr7_2 | exon | 86012771 | 86012790 | 86012771 | ID=Msa1085360-mRNA-1:exon:23267;Parent=Msa1085360-mRNA-1 |
| chr7_2 | exon | 86012902 | 86012991 | 86012902 | ID=Msa1085360-mRNA-1:exon:23268;Parent=Msa1085360-mRNA-1 |
| chr7_2 | exon | 86013313 | 86013606 | 86013313 | ID=Msa1085360-mRNA-1:exon:23269;Parent=Msa1085360-mRNA-1 |
| chr7_2 | CDS | 86011983 | 86012117 | 86011983 | ID=Msa1085360-mRNA-1:cds;Parent=Msa1085360-mRNA-1 |
| chr7_2 | CDS | 86012549 | 86012645 | 86012549 | ID=Msa1085360-mRNA-1:cds;Parent=Msa1085360-mRNA-1 |
| chr7_2 | CDS | 86012771 | 86012790 | 86012771 | ID=Msa1085360-mRNA-1:cds;Parent=Msa1085360-mRNA-1 |
| chr7_2 | CDS | 86012902 | 86012991 | 86012902 | ID=Msa1085360-mRNA-1:cds;Parent=Msa1085360-mRNA-1 |
| chr7_2 | CDS | 86013313 | 86013606 | 86013313 | ID=Msa1085360-mRNA-1:cds;Parent=Msa1085360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
