AlfalfaGEDB | Msa1087250

M. sativa cultivar zhongmu-4 / Msa1087250

KEGG: K13429
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087250	Q6UD73.1	81.026	643	66	3	12	621	1	620	0.0	1051

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087250	sp\|Q6UD73\|LYK3_MEDTR	81.026	643	66	3	12	621	1	620	0.0	1051

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087250	A0A396HVJ5	81.026	643	66	3	12	621	1	620	0.0	1051

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087250	MtrunA17_Chr5g0439631	81.026	643	66	3	12	621	1	620	0.0	1051
Msa1087250	MtrunA17_Chr5g0439701	80.560	643	61	5	12	621	1	612	0.0	1009
Msa1087250	MtrunA17_Chr3g0119241	55.399	639	220	7	18	621	13	621	0.0	655
Msa1087250	MtrunA17_Chr5g0439561	52.381	651	240	9	11	621	18	638	0.0	633
Msa1087250	MtrunA17_Chr2g0289131	53.395	648	220	11	18	621	7	616	0.0	613
Msa1087250	MtrunA17_Chr5g0439571	49.537	648	239	11	8	621	35	628	0.0	546
Msa1087250	MtrunA17_Chr5g0439601	49.275	621	227	13	33	602	24	607	0.0	540
Msa1087250	MtrunA17_Chr5g0439801	47.727	616	196	11	33	602	21	556	5.35e-177	514
Msa1087250	MtrunA17_Chr5g0439621	50.215	466	152	8	185	602	301	734	1.56e-132	406
Msa1087250	MtrunA17_Chr5g0439621	43.866	269	128	4	33	300	49	295	2.33e-64	225

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087250	AT3G21630.1	50.078	645	259	11	12	621	1	617	0.0	588
Msa1087250	AT1G51940.1	40.864	301	133	6	338	593	323	623	4.27e-67	231
Msa1087250	AT3G24540.1	39.865	296	140	5	261	551	121	383	3.80e-60	208
Msa1087250	AT3G23750.1	42.333	300	134	5	336	596	558	857	7.46e-60	216
Msa1087250	AT3G24550.1	42.268	291	131	7	339	593	264	553	1.37e-59	211
Msa1087250	AT5G02800.1	41.980	293	131	9	344	598	61	352	2.14e-59	203
Msa1087250	AT1G70460.1	43.548	248	135	3	309	551	306	553	2.68e-59	211
Msa1087250	AT1G56720.3	40.972	288	157	7	344	620	167	452	3.28e-59	206
Msa1087250	AT1G56720.1	40.972	288	157	7	344	620	167	452	3.28e-59	206
Msa1087250	AT1G56720.2	40.972	288	157	7	344	620	167	452	3.28e-59	206

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Find 115 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATGTATATGCTTT+TGG	0.283301	7_2:-87959727	Msa1087250:CDS
AAAATTGGTCAAGGTGGATT+TGG	0.269763	7_2:-87961084	Msa1087250:CDS
AAATGGAAGCATAACTTGGT+AGG	0.562694	7_2:+87962889	None:intergenic
AAATTTGGTTCTATATTAGC+AGG	0.456919	7_2:-87961593	Msa1087250:CDS
AACCAGATTTCAAAAGATTA+TGG	0.166485	7_2:-87962521	Msa1087250:CDS
AACTTGGGTCAATATTTACA+TGG	0.530800	7_2:-87960432	Msa1087250:CDS
AAGAATGCTGTCCTGAAAAC+AGG	0.487873	7_2:-87959676	Msa1087250:CDS
AAGGCCAGCAGCACTACCAG+TGG	0.690070	7_2:+87961188	None:intergenic
AATCAGTCTAATCTTGATGA+AGG	0.452179	7_2:-87962446	Msa1087250:CDS
ACAAACAAATCATACTCTGG+TGG	0.654465	7_2:+87959984	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACTGTCAATTGTTCTTGT+GGG	-	chr7_2:87959434-87959453	Msa1087250:intron	30.0%
AATCAGTCTAATCTTGATGA+AGG	-	chr7_2:87959535-87959554	Msa1087250:intron	30.0%
ATCAGTCTAATCTTGATGAA+GGG	-	chr7_2:87959536-87959555	Msa1087250:intron	30.0%
TTGATACAGAGTTACAATTC+TGG	-	chr7_2:87959559-87959578	Msa1087250:intron	30.0%
ATAAATTATTCTGCCAACTG+CGG	-	chr7_2:87959719-87959738	Msa1087250:CDS	30.0%
ACCTATAATCTAAGTCACAA+CGG	+	chr7_2:87959776-87959795	None:intergenic	30.0%
TATATTAGCAGGTCTTTCTA+AGG	-	chr7_2:87960399-87960418	Msa1087250:intron	30.0%
ATATTAGCAGGTCTTTCTAA+GGG	-	chr7_2:87960400-87960419	Msa1087250:intron	30.0%
TAAACTTCCACAAACTTCTA+GGG	-	chr7_2:87960522-87960541	Msa1087250:intron	30.0%
GGAACAAGTACTTATAAGAT+AGG	+	chr7_2:87960620-87960639	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	87958956	87963047	87958956	ID=Msa1087250;Name=Msa1087250
chr7_2	mRNA	87958956	87963047	87958956	ID=Msa1087250-mRNA-1;Parent=Msa1087250;Name=Msa1087250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.5\|0.27\|0.90\|0.9\|0.90\|11\|0\|621
chr7_2	exon	87962375	87963047	87962375	ID=Msa1087250-mRNA-1:exon:24053;Parent=Msa1087250-mRNA-1
chr7_2	exon	87961839	87961872	87961839	ID=Msa1087250-mRNA-1:exon:24052;Parent=Msa1087250-mRNA-1
chr7_2	exon	87961709	87961713	87961709	ID=Msa1087250-mRNA-1:exon:24051;Parent=Msa1087250-mRNA-1
chr7_2	exon	87961441	87961659	87961441	ID=Msa1087250-mRNA-1:exon:24050;Parent=Msa1087250-mRNA-1
chr7_2	exon	87961053	87961255	87961053	ID=Msa1087250-mRNA-1:exon:24049;Parent=Msa1087250-mRNA-1
chr7_2	exon	87960791	87960880	87960791	ID=Msa1087250-mRNA-1:exon:24048;Parent=Msa1087250-mRNA-1
chr7_2	exon	87960427	87960520	87960427	ID=Msa1087250-mRNA-1:exon:24047;Parent=Msa1087250-mRNA-1
chr7_2	exon	87960190	87960341	87960190	ID=Msa1087250-mRNA-1:exon:24046;Parent=Msa1087250-mRNA-1
chr7_2	exon	87959999	87960090	87959999	ID=Msa1087250-mRNA-1:exon:24045;Parent=Msa1087250-mRNA-1
chr7_2	exon	87959639	87959777	87959639	ID=Msa1087250-mRNA-1:exon:24044;Parent=Msa1087250-mRNA-1
chr7_2	exon	87958956	87959120	87958956	ID=Msa1087250-mRNA-1:exon:24043;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87962375	87963047	87962375	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87961839	87961872	87961839	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87961709	87961713	87961709	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87961441	87961659	87961441	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87961053	87961255	87961053	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87960791	87960880	87960791	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87960427	87960520	87960427	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87960190	87960341	87960190	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87959999	87960090	87959999	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87959639	87959777	87959639	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1
chr7_2	CDS	87958956	87959120	87958956	ID=Msa1087250-mRNA-1:cds;Parent=Msa1087250-mRNA-1

Gene Sequence

>Msa1087250

AGCCATTTAAATTTTCTGTCTCTTATTGACTCAATGAAACTAAAATATGGCTTACTACTGTTGTTTATATTTCTGGAATGTGTTTTTTTCAAAGTAGATTCCAAGTGTGTAAAGGGGTGTGATGTAGCCTTAGCTTCCTACCAAGTTATGCTTCCATTTATGTACGAAAACATAACAAGTTTTATGCAATCAAAGATTGTGTCAGTGTCCAATTTTTCCAATGTTATAATAAGCTACAATAAAGACAAAGTATCCAAAAATGGCAATCTTTTTGCCTTTTATAGGGTCAACATTCCATTCCCATGTGAATGTATTGGAGGTGAGTTTCTGGGACATGTGTTTGAATATACAGCAAAAGAAGGAGATACTTATGATTTGATTGCCAATTCTTATTATGCAAGTTTGACTACAGTTGAGTTTTTGAAAAAGTTCAATAGTTATGATCCAGATCATATACCTGCTAAGGCTAAGGTTAATGTAACTGTCAATTGTTCTTGTGGGAACAACCAGATTTCAAAAGATTATGGGTTGTTTATTACCTATCCACTCAGGACTGATGATACTCTTCAGAAGATTGCAAATCAGTCTAATCTTGATGAAGGGTTGATACAGAGTTACAATTCTGGTGTCAATTTCAGCAAAGGAAGTGGGATAGTGTTCATTCCAGGAAGAGATCAAAATGGACATTATTTTCCTTTGTATCCTAGAACAGATATGAGAATTAATGGACAAAAGGTCAATGCTTCCTGTGATCTTAAATTTGGTTCTATATTAGCAGGTCTTTCTAAGGGTTCAGCTGTTGGTATAGCTATGGCAGGAATATCTGGGCTTCTATTATTTGTTATCTATATATATGCCAAATACTTCCAAAAGAAGGAAGAAGAGAAAACTAAACTTCCACAAACTTCTAGGGCATTTTCAACTCAAGATGCCGCAGGTAGTGCAGAATATGAAACTTCAGGATCTAGTGGGCATGCCACTGGTAGTGCTGCTGGCCTTACAGGTATTATGGTGGCAAAGTCGACAGAGTTTTCATATCAAGAATTAGCCAAGGCTACAAATAATTTCAGCTTGGATAATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTACTATGCAGAACTTAGAGGCGAGAAAACAGCAATTAAGAAGATGGATGTACAAGCATCGTCAGAATTTCTTTGTGAGTTGAAGGTCTTAACGCATGTTCATCACTTGAATCTGGTGCGGTTGATTGGATATTGCGTTGAAGGATCACTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTACATGGTATAGGTACAGAACCATTACCATGGTCTAGTAGAGTGCAGATTGCTCTAGATTCAGCCAGAGGCCTTGAATACATTCATGAACACACTGTGCCTGTTTATATCCATCGCGACGTAAAATCGGCAAATATATTGATAGACAAAAATTTGCGTGGAAAGGTTGCTGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCGACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGATGTTTCTCCAAAAATAGATGTATATGCTTTTGGCGTTGTTCTTTATGAACTTATTACTGCAAAGAATGCTGTCCTGAAAACAGGTGAATCTGTTGCTGAATCAAAGGGTCTTGTACAATTGATGGCTCAACTTGGGAGAGCATGTACGAGAGACAATCCGCTACTACGCCCAAGCATGAGATCTATAGTTGTTGCTCTTATGACACTCTCATCACCAACTGAAGATTGTGATGATGACTCTTCATATGAAAATCAATCTCTCATAAATCTGTTGTCAACTAGATGA

Protein sequence

>Msa1087250

SHLNFLSLIDSMKLKYGLLLLFIFLECVFFKVDSKCVKGCDVALASYQVMLPFMYENITSFMQSKIVSVSNFSNVIISYNKDKVSKNGNLFAFYRVNIPFPCECIGGEFLGHVFEYTAKEGDTYDLIANSYYASLTTVEFLKKFNSYDPDHIPAKAKVNVTVNCSCGNNQISKDYGLFITYPLRTDDTLQKIANQSNLDEGLIQSYNSGVNFSKGSGIVFIPGRDQNGHYFPLYPRTDMRINGQKVNASCDLKFGSILAGLSKGSAVGIAMAGISGLLLFVIYIYAKYFQKKEEEKTKLPQTSRAFSTQDAAGSAEYETSGSSGHATGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFGAVYYAELRGEKTAIKKMDVQASSEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGTEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELITAKNAVLKTGESVAESKGLVQLMAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDDDSSYENQSLINLLSTR*