Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087280 | KEH28325.1 | 96.154 | 130 | 5 | 0 | 1 | 130 | 196 | 325 | 5.93e-87 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087280 | sp|Q6UD73|LYK3_MEDTR | 62.687 | 134 | 43 | 4 | 1 | 130 | 484 | 614 | 2.49e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087280 | A0A072UR41 | 96.154 | 130 | 5 | 0 | 1 | 130 | 196 | 325 | 2.83e-87 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087280 | MtrunA17_Chr5g0439571 | 96.154 | 130 | 5 | 0 | 1 | 130 | 493 | 622 | 1.67e-87 | 266 |
| Msa1087280 | MtrunA17_Chr5g0439561 | 69.173 | 133 | 35 | 3 | 1 | 130 | 503 | 632 | 9.98e-54 | 178 |
| Msa1087280 | MtrunA17_Chr3g0119241 | 64.925 | 134 | 40 | 4 | 1 | 130 | 485 | 615 | 1.98e-49 | 166 |
| Msa1087280 | MtrunA17_Chr2g0289131 | 64.179 | 134 | 41 | 4 | 1 | 130 | 480 | 610 | 5.47e-49 | 165 |
| Msa1087280 | MtrunA17_Chr5g0439631 | 62.687 | 134 | 43 | 4 | 1 | 130 | 484 | 614 | 1.83e-45 | 155 |
| Msa1087280 | MtrunA17_Chr5g0439801 | 57.353 | 136 | 42 | 3 | 1 | 122 | 428 | 561 | 1.51e-41 | 144 |
| Msa1087280 | MtrunA17_Chr5g0439621 | 59.091 | 132 | 37 | 2 | 1 | 117 | 605 | 734 | 1.92e-41 | 145 |
| Msa1087280 | MtrunA17_Chr5g0439601 | 57.463 | 134 | 38 | 3 | 1 | 117 | 476 | 607 | 2.62e-39 | 139 |
| Msa1087280 | MtrunA17_Chr5g0439591 | 54.412 | 136 | 43 | 3 | 1 | 119 | 234 | 367 | 1.33e-38 | 133 |
| Msa1087280 | MtrunA17_Chr5g0439701 | 56.716 | 134 | 51 | 4 | 1 | 130 | 476 | 606 | 1.35e-38 | 137 |
| Msa1087280 | MtrunA17_Chr5g0413071 | 37.097 | 124 | 73 | 3 | 1 | 121 | 477 | 598 | 3.30e-20 | 85.1 |
| Msa1087280 | MtrunA17_Chr8g0340721 | 34.127 | 126 | 74 | 3 | 1 | 118 | 525 | 649 | 6.99e-17 | 75.9 |
| Msa1087280 | MtrunA17_Chr5g0439334 | 34.959 | 123 | 73 | 4 | 1 | 119 | 523 | 642 | 7.94e-16 | 72.8 |
| Msa1087280 | MtrunA17_Chr3g0119351 | 38.136 | 118 | 66 | 5 | 1 | 115 | 545 | 658 | 1.30e-14 | 69.3 |
| Msa1087280 | MtrunA17_Chr4g0064201 | 39.024 | 123 | 68 | 5 | 3 | 124 | 289 | 405 | 2.98e-14 | 68.2 |
| Msa1087280 | MtrunA17_Chr4g0031601 | 41.121 | 107 | 57 | 4 | 3 | 108 | 273 | 374 | 3.33e-14 | 67.8 |
| Msa1087280 | MtrunA17_Chr2g0326901 | 37.500 | 112 | 66 | 2 | 3 | 114 | 402 | 509 | 4.37e-14 | 67.8 |
| Msa1087280 | MtrunA17_Chr5g0416011 | 38.710 | 124 | 67 | 5 | 3 | 124 | 315 | 431 | 6.65e-14 | 67.0 |
| Msa1087280 | MtrunA17_Chr7g0216551 | 37.097 | 124 | 69 | 5 | 3 | 124 | 303 | 419 | 1.43e-13 | 66.2 |
| Msa1087280 | MtrunA17_Chr5g0399981 | 34.188 | 117 | 51 | 4 | 3 | 108 | 243 | 344 | 1.44e-13 | 65.9 |
| Msa1087280 | MtrunA17_Chr4g0069061 | 37.273 | 110 | 63 | 4 | 3 | 111 | 87 | 191 | 6.42e-13 | 62.8 |
| Msa1087280 | MtrunA17_Chr8g0377951 | 38.136 | 118 | 66 | 4 | 1 | 116 | 741 | 853 | 7.79e-13 | 64.3 |
| Msa1087280 | MtrunA17_Chr8g0380441 | 34.211 | 114 | 71 | 2 | 3 | 116 | 249 | 358 | 7.95e-13 | 63.9 |
| Msa1087280 | MtrunA17_Chr5g0403371 | 36.364 | 99 | 62 | 1 | 14 | 111 | 466 | 564 | 1.08e-12 | 63.5 |
| Msa1087280 | MtrunA17_Chr2g0281501 | 29.907 | 107 | 70 | 2 | 3 | 109 | 609 | 710 | 1.28e-12 | 63.5 |
| Msa1087280 | MtrunA17_Chr5g0448661 | 36.634 | 101 | 61 | 2 | 15 | 115 | 292 | 389 | 1.35e-12 | 63.2 |
| Msa1087280 | MtrunA17_Chr3g0125281 | 39.640 | 111 | 57 | 5 | 1 | 109 | 577 | 679 | 2.24e-12 | 62.8 |
| Msa1087280 | MtrunA17_Chr8g0341121 | 35.398 | 113 | 57 | 4 | 1 | 108 | 26 | 127 | 2.87e-12 | 60.5 |
| Msa1087280 | MtrunA17_Chr7g0233091 | 34.921 | 126 | 68 | 4 | 1 | 118 | 716 | 835 | 3.06e-12 | 62.4 |
| Msa1087280 | MtrunA17_Chr7g0251771 | 36.036 | 111 | 66 | 2 | 3 | 113 | 224 | 329 | 3.10e-12 | 62.4 |
| Msa1087280 | MtrunA17_Chr7g0225871 | 33.043 | 115 | 72 | 3 | 1 | 111 | 232 | 345 | 3.42e-12 | 62.0 |
| Msa1087280 | MtrunA17_Chr3g0125631 | 34.821 | 112 | 61 | 4 | 1 | 108 | 240 | 343 | 3.70e-12 | 62.0 |
| Msa1087280 | MtrunA17_Chr8g0362661 | 36.290 | 124 | 70 | 5 | 3 | 124 | 313 | 429 | 4.79e-12 | 61.6 |
| Msa1087280 | MtrunA17_Chr8g0341881 | 37.037 | 108 | 63 | 2 | 1 | 108 | 573 | 675 | 5.66e-12 | 61.6 |
| Msa1087280 | MtrunA17_Chr4g0048951 | 36.937 | 111 | 61 | 4 | 1 | 111 | 283 | 384 | 6.99e-12 | 61.2 |
| Msa1087280 | MtrunA17_Chr8g0340931 | 35.354 | 99 | 57 | 2 | 11 | 108 | 743 | 835 | 8.38e-12 | 61.2 |
| Msa1087280 | MtrunA17_Chr8g0389251 | 34.259 | 108 | 66 | 2 | 1 | 108 | 572 | 674 | 8.82e-12 | 61.2 |
| Msa1087280 | MtrunA17_Chr5g0403381 | 30.000 | 120 | 82 | 2 | 1 | 120 | 520 | 637 | 1.27e-11 | 60.5 |
| Msa1087280 | MtrunA17_Chr8g0359641 | 34.483 | 116 | 71 | 3 | 1 | 116 | 836 | 946 | 3.13e-11 | 59.7 |
| Msa1087280 | MtrunA17_Chr2g0299301 | 33.333 | 123 | 65 | 3 | 15 | 124 | 1243 | 1361 | 3.24e-11 | 59.7 |
| Msa1087280 | MtrunA17_Chr2g0315151 | 37.963 | 108 | 62 | 4 | 1 | 108 | 835 | 937 | 5.13e-11 | 58.9 |
| Msa1087280 | MtrunA17_Chr7g0263591 | 35.238 | 105 | 64 | 2 | 1 | 105 | 773 | 873 | 5.29e-11 | 58.9 |
| Msa1087280 | MtrunA17_Chr4g0023111 | 32.203 | 118 | 67 | 4 | 1 | 114 | 884 | 992 | 6.53e-11 | 58.5 |
| Msa1087280 | MtrunA17_Chr2g0330471 | 35.185 | 108 | 65 | 2 | 1 | 108 | 575 | 677 | 6.80e-11 | 58.5 |
| Msa1087280 | MtrunA17_Chr7g0221191 | 34.234 | 111 | 72 | 1 | 1 | 111 | 562 | 671 | 7.63e-11 | 58.5 |
| Msa1087280 | MtrunA17_Chr8g0359581 | 36.111 | 108 | 55 | 5 | 1 | 108 | 83 | 176 | 8.39e-11 | 56.6 |
| Msa1087280 | MtrunA17_Chr7g0262521 | 32.039 | 103 | 67 | 1 | 15 | 117 | 529 | 628 | 9.61e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087280 | AT3G21630.1 | 57.143 | 126 | 48 | 3 | 1 | 123 | 483 | 605 | 7.09e-38 | 135 |
| Msa1087280 | AT1G51940.1 | 35.714 | 126 | 72 | 3 | 1 | 118 | 509 | 633 | 2.81e-17 | 77.0 |
| Msa1087280 | AT2G33580.1 | 35.772 | 123 | 72 | 3 | 1 | 118 | 530 | 650 | 2.89e-15 | 71.6 |
| Msa1087280 | AT2G28250.2 | 38.053 | 113 | 68 | 2 | 3 | 115 | 389 | 499 | 9.40e-14 | 67.0 |
| Msa1087280 | AT2G28250.5 | 38.053 | 113 | 68 | 2 | 3 | 115 | 389 | 499 | 9.40e-14 | 67.0 |
| Msa1087280 | AT2G28250.4 | 38.053 | 113 | 68 | 2 | 3 | 115 | 389 | 499 | 9.40e-14 | 67.0 |
| Msa1087280 | AT2G28250.1 | 38.053 | 113 | 68 | 2 | 3 | 115 | 389 | 499 | 9.40e-14 | 67.0 |
| Msa1087280 | AT2G28250.6 | 38.053 | 113 | 68 | 2 | 3 | 115 | 389 | 499 | 9.40e-14 | 67.0 |
| Msa1087280 | AT2G28250.3 | 38.053 | 113 | 68 | 2 | 3 | 115 | 389 | 499 | 9.40e-14 | 67.0 |
| Msa1087280 | AT5G11410.2 | 33.636 | 110 | 65 | 4 | 1 | 108 | 135 | 238 | 4.61e-13 | 64.3 |
| Msa1087280 | AT5G11410.1 | 33.636 | 110 | 65 | 4 | 1 | 108 | 225 | 328 | 1.12e-12 | 63.9 |
| Msa1087280 | AT5G38560.1 | 37.500 | 120 | 72 | 3 | 1 | 119 | 508 | 625 | 1.66e-12 | 63.5 |
| Msa1087280 | AT1G07570.4 | 34.821 | 112 | 67 | 3 | 3 | 113 | 133 | 239 | 4.95e-12 | 61.6 |
| Msa1087280 | AT5G15080.1 | 34.146 | 123 | 74 | 4 | 3 | 124 | 321 | 437 | 6.62e-12 | 61.6 |
| Msa1087280 | AT5G56460.1 | 33.913 | 115 | 72 | 2 | 3 | 117 | 255 | 365 | 7.98e-12 | 61.6 |
| Msa1087280 | AT3G13690.2 | 35.185 | 108 | 65 | 2 | 1 | 108 | 579 | 681 | 8.53e-12 | 61.6 |
| Msa1087280 | AT3G13690.1 | 35.185 | 108 | 65 | 2 | 1 | 108 | 579 | 681 | 8.53e-12 | 61.6 |
| Msa1087280 | AT3G13690.3 | 35.185 | 108 | 65 | 2 | 1 | 108 | 579 | 681 | 8.53e-12 | 61.6 |
| Msa1087280 | AT1G55200.3 | 37.143 | 105 | 61 | 2 | 1 | 105 | 547 | 646 | 1.28e-11 | 60.8 |
| Msa1087280 | AT1G55200.4 | 37.143 | 105 | 61 | 2 | 1 | 105 | 547 | 646 | 1.28e-11 | 60.8 |
| Msa1087280 | AT1G55200.1 | 37.143 | 105 | 61 | 2 | 1 | 105 | 547 | 646 | 1.28e-11 | 60.8 |
| Msa1087280 | AT1G55200.2 | 37.143 | 105 | 61 | 2 | 1 | 105 | 547 | 646 | 1.28e-11 | 60.8 |
| Msa1087280 | AT1G07570.1 | 34.821 | 112 | 67 | 3 | 3 | 113 | 249 | 355 | 1.47e-11 | 60.8 |
| Msa1087280 | AT1G07570.5 | 34.821 | 112 | 67 | 3 | 3 | 113 | 249 | 355 | 1.47e-11 | 60.8 |
| Msa1087280 | AT1G07570.2 | 34.821 | 112 | 67 | 3 | 3 | 113 | 249 | 355 | 1.47e-11 | 60.8 |
| Msa1087280 | AT1G07570.3 | 34.821 | 112 | 67 | 3 | 3 | 113 | 260 | 366 | 1.72e-11 | 60.5 |
| Msa1087280 | AT4G29990.1 | 35.185 | 108 | 64 | 3 | 1 | 108 | 741 | 842 | 1.89e-11 | 60.5 |
| Msa1087280 | AT1G17910.1 | 32.500 | 120 | 73 | 3 | 3 | 120 | 624 | 737 | 2.33e-11 | 60.5 |
| Msa1087280 | AT2G01820.1 | 35.652 | 115 | 67 | 5 | 1 | 112 | 757 | 867 | 4.30e-11 | 59.7 |
| Msa1087280 | AT1G72180.1 | 33.945 | 109 | 66 | 4 | 1 | 108 | 855 | 958 | 4.35e-11 | 59.7 |
| Msa1087280 | AT1G79670.2 | 33.051 | 118 | 72 | 3 | 1 | 117 | 552 | 663 | 8.38e-11 | 58.5 |
| Msa1087280 | AT4G23290.2 | 35.345 | 116 | 67 | 5 | 1 | 114 | 532 | 641 | 9.75e-11 | 58.5 |
| Msa1087280 | AT1G53420.1 | 34.862 | 109 | 64 | 3 | 1 | 108 | 793 | 895 | 9.78e-11 | 58.5 |
| Msa1087280 | AT1G79670.1 | 33.051 | 118 | 72 | 3 | 1 | 117 | 589 | 700 | 9.84e-11 | 58.5 |
Find 43 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCGCAGGTTGCGGATTT+TGG | 0.124929 | 7_2:-88008651 | Msa1087280:intron |
| AATGATGGTCCTCAAATAAA+AGG | 0.269847 | 7_2:-88008330 | Msa1087280:CDS |
| GACATTAAATTTACAAAAGC+TGG | 0.284983 | 7_2:+88007786 | None:intergenic |
| TTGAGGACCATCATTGATTA+CGG | 0.371572 | 7_2:+88008338 | None:intergenic |
| AAAGTAGATGTCTACGCCTT+TGG | 0.441237 | 7_2:-88008396 | Msa1087280:CDS |
| ACCACAATCGATCTCATACT+TGG | 0.441882 | 7_2:+88007870 | None:intergenic |
| TGGCAGTTTGATGAAGTGTT+TGG | 0.445538 | 7_2:-88008114 | Msa1087280:intron |
| ATATCGCGATGGATATATAC+AGG | 0.447121 | 7_2:+88008802 | None:intergenic |
| ATTTCCAACATCAGCAAGCT+TGG | 0.458175 | 7_2:+88008623 | None:intergenic |
| ATTATTTACTTAATTTAATG+AGG | 0.462544 | 7_2:+88008905 | None:intergenic |
| AAGTTTCCGTCGATGCATAA+AGG | 0.462853 | 7_2:-88007643 | Msa1087280:three_prime_UTR |
| CTCAATTGATTCAGTTTGCA+AGG | 0.482142 | 7_2:-88008028 | Msa1087280:intron |
| TATGAGCAAGATCCAATAGA+AGG | 0.483904 | 7_2:-88008090 | Msa1087280:CDS |
| ATGAATATATTCAAGACCTC+TGG | 0.490703 | 7_2:+88008837 | None:intergenic |
| ATAGTTGCGGAGGGTACATT+CGG | 0.498489 | 7_2:-88008585 | Msa1087280:five_prime_UTR |
| CTCATACTTGGACGTAGTTG+TGG | 0.503398 | 7_2:+88007882 | None:intergenic |
| TTATCCAAGCTTGCTGATGT+TGG | 0.510167 | 7_2:-88008627 | Msa1087280:five_prime_UTR |
| ATTAAGTAAATAATTAAGAC+GGG | 0.510727 | 7_2:-88008896 | Msa1087280:five_prime_UTR |
| AAGGCGTAGACATCTACTTT+CGG | 0.511570 | 7_2:+88008399 | None:intergenic |
| TACAAGGCTGCAAATTGCGC+TGG | 0.518286 | 7_2:-88008866 | Msa1087280:five_prime_UTR |
| AATAAAAGGCCTTGTGGCTG+TGG | 0.519442 | 7_2:-88008316 | Msa1087280:intron |
| AATTAAGTAAATAATTAAGA+CGG | 0.523190 | 7_2:-88008897 | Msa1087280:five_prime_UTR |
| TAACTTCTACAACTGAGGAT+TGG | 0.531612 | 7_2:-88007833 | Msa1087280:CDS |
| GACACTAACTTCTACAACTG+AGG | 0.551851 | 7_2:-88007838 | Msa1087280:CDS |
| AATCTGGTGGATCCTAGACT+TGG | 0.553916 | 7_2:-88008060 | Msa1087280:CDS |
| GAGTAGTTATCTCCAAGTCT+AGG | 0.555786 | 7_2:+88008048 | None:intergenic |
| AACTTCATCAACTATAGTTG+CGG | 0.559590 | 7_2:-88008598 | Msa1087280:five_prime_UTR |
| TTCATCAACTATAGTTGCGG+AGG | 0.564758 | 7_2:-88008595 | Msa1087280:five_prime_UTR |
| TGTTGACCTTTATGCATCGA+CGG | 0.574536 | 7_2:+88007637 | None:intergenic |
| AAAGCAGCCGTAATCAATGA+TGG | 0.575107 | 7_2:-88008345 | Msa1087280:CDS |
| TAAGACGGGCGTTACATACA+AGG | 0.579706 | 7_2:-88008882 | Msa1087280:five_prime_UTR |
| TCCAAGTATGAGATCGATTG+TGG | 0.583817 | 7_2:-88007871 | Msa1087280:CDS |
| TTCAGCTTAAGTGTTCAACT+AGG | 0.584277 | 7_2:+88007697 | None:intergenic |
| AGCAAAAGCATGTACAATGA+GGG | 0.589628 | 7_2:-88007907 | Msa1087280:CDS |
| TAGCAAAAGCATGTACAATG+AGG | 0.600715 | 7_2:-88007908 | Msa1087280:CDS |
| TCCTCAAATAAAAGGCCTTG+TGG | 0.641440 | 7_2:-88008322 | Msa1087280:CDS |
| CTTATTTACAGATACGCATG+TGG | 0.646342 | 7_2:-88008438 | Msa1087280:intron |
| GAGAATTGATCATACTCTGG+TGG | 0.650261 | 7_2:+88008555 | None:intergenic |
| TTCGTACAGAACAACACCAA+AGG | 0.661515 | 7_2:+88008380 | None:intergenic |
| GAGCAGTAGATATCACATTG+AGG | 0.662717 | 7_2:-88007581 | Msa1087280:three_prime_UTR |
| TCATCAACTATAGTTGCGGA+GGG | 0.663647 | 7_2:-88008594 | Msa1087280:five_prime_UTR |
| ATTGCGCTGGATTCAGCCAG+AGG | 0.663685 | 7_2:-88008853 | Msa1087280:five_prime_UTR |
| GGAGAATCACCACAGCCACA+AGG | 0.669110 | 7_2:+88008307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTACTTAATTTAATG+AGG | + | chr7_2:88007579-88007598 | None:intergenic | 10.0% |
| !! | AATTAAGTAAATAATTAAGA+CGG | - | chr7_2:88007584-88007603 | Msa1087280:three_prime_UTR | 10.0% |
| !! | TATCTTTATGTAAAATTATT+AGG | + | chr7_2:88008221-88008240 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTGTTAATTTATT+TGG | - | chr7_2:88008347-88008366 | Msa1087280:CDS | 10.0% |
| !! | ATTATTTACTTAATTTAATG+AGG | + | chr7_2:88007579-88007598 | None:intergenic | 10.0% |
| !! | AATTAAGTAAATAATTAAGA+CGG | - | chr7_2:88007584-88007603 | Msa1087280:three_prime_UTR | 10.0% |
| !! | TATCTTTATGTAAAATTATT+AGG | + | chr7_2:88008221-88008240 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTGTTAATTTATT+TGG | - | chr7_2:88008347-88008366 | Msa1087280:CDS | 10.0% |
| !! | ATTAAGTAAATAATTAAGAC+GGG | - | chr7_2:88007585-88007604 | Msa1087280:three_prime_UTR | 15.0% |
| !! | TAGTAATATAAATAGTGATT+TGG | + | chr7_2:88008268-88008287 | None:intergenic | 15.0% |
| !! | AAATCACTATTTATATTACT+AGG | - | chr7_2:88008267-88008286 | Msa1087280:intron | 15.0% |
| !!! | AACATTTTCAACATTAATAA+AGG | - | chr7_2:88008514-88008533 | Msa1087280:intron | 15.0% |
| !! | ATTAAGTAAATAATTAAGAC+GGG | - | chr7_2:88007585-88007604 | Msa1087280:three_prime_UTR | 15.0% |
| !! | TAGTAATATAAATAGTGATT+TGG | + | chr7_2:88008268-88008287 | None:intergenic | 15.0% |
| !! | AAATCACTATTTATATTACT+AGG | - | chr7_2:88008267-88008286 | Msa1087280:intron | 15.0% |
| !!! | AACATTTTCAACATTAATAA+AGG | - | chr7_2:88008514-88008533 | Msa1087280:intron | 15.0% |
| !!! | TTTTTTACTGTTTTTCTTAC+TGG | - | chr7_2:88007775-88007794 | Msa1087280:intron | 20.0% |
| !!! | TTTTTACTGTTTTTCTTACT+GGG | - | chr7_2:88007776-88007795 | Msa1087280:intron | 20.0% |
| !! | TTCTCAAATTCTATATCTTA+AGG | + | chr7_2:88007977-88007996 | None:intergenic | 20.0% |
| !! | AACAAAAAAACTTAACAAGT+AGG | + | chr7_2:88008339-88008358 | None:intergenic | 20.0% |
| !!! | AGATTTTTTATACCTTCTAT+TGG | + | chr7_2:88008406-88008425 | None:intergenic | 20.0% |
| !!! | AATAGAAGGTATAAAAAATC+TGG | - | chr7_2:88008405-88008424 | Msa1087280:CDS | 20.0% |
| !! | TTTCAACATTAATAAAGGTT+TGG | - | chr7_2:88008519-88008538 | Msa1087280:intron | 20.0% |
| !!! | TTTTTTACTGTTTTTCTTAC+TGG | - | chr7_2:88007775-88007794 | Msa1087280:intron | 20.0% |
| !!! | TTTTTACTGTTTTTCTTACT+GGG | - | chr7_2:88007776-88007795 | Msa1087280:intron | 20.0% |
| !! | TTCTCAAATTCTATATCTTA+AGG | + | chr7_2:88007977-88007996 | None:intergenic | 20.0% |
| !! | AACAAAAAAACTTAACAAGT+AGG | + | chr7_2:88008339-88008358 | None:intergenic | 20.0% |
| !!! | AGATTTTTTATACCTTCTAT+TGG | + | chr7_2:88008406-88008425 | None:intergenic | 20.0% |
| !!! | AATAGAAGGTATAAAAAATC+TGG | - | chr7_2:88008405-88008424 | Msa1087280:CDS | 20.0% |
| !! | TTTCAACATTAATAAAGGTT+TGG | - | chr7_2:88008519-88008538 | Msa1087280:intron | 20.0% |
| !! | TCTCCTTTATTCTTTTCAAT+TGG | - | chr7_2:88008192-88008211 | Msa1087280:intron | 25.0% |
| ! | ATGCCAATTGAAAAGAATAA+AGG | + | chr7_2:88008198-88008217 | None:intergenic | 25.0% |
| ! | AAAAACTTAACAAGTAGGAA+AGG | + | chr7_2:88008334-88008353 | None:intergenic | 25.0% |
| ! | AATAAAATTCCTTACACAAC+TGG | + | chr7_2:88008481-88008500 | None:intergenic | 25.0% |
| ! | GACATTAAATTTACAAAAGC+TGG | + | chr7_2:88008698-88008717 | None:intergenic | 25.0% |
| !! | GCTTTTGTAAATTTAATGTC+TGG | - | chr7_2:88008698-88008717 | Msa1087280:intron | 25.0% |
| !! | TCTCCTTTATTCTTTTCAAT+TGG | - | chr7_2:88008192-88008211 | Msa1087280:intron | 25.0% |
| ! | ATGCCAATTGAAAAGAATAA+AGG | + | chr7_2:88008198-88008217 | None:intergenic | 25.0% |
| ! | AAAAACTTAACAAGTAGGAA+AGG | + | chr7_2:88008334-88008353 | None:intergenic | 25.0% |
| ! | AATAAAATTCCTTACACAAC+TGG | + | chr7_2:88008481-88008500 | None:intergenic | 25.0% |
| ! | GACATTAAATTTACAAAAGC+TGG | + | chr7_2:88008698-88008717 | None:intergenic | 25.0% |
| !! | GCTTTTGTAAATTTAATGTC+TGG | - | chr7_2:88008698-88008717 | Msa1087280:intron | 25.0% |
| ATGAATATATTCAAGACCTC+TGG | + | chr7_2:88007647-88007666 | None:intergenic | 30.0% | |
| ! | TTTCTGATTTTATATCGCGA+TGG | + | chr7_2:88007693-88007712 | None:intergenic | 30.0% |
| AACTTCATCAACTATAGTTG+CGG | - | chr7_2:88007883-88007902 | Msa1087280:CDS | 30.0% | |
| AAAGAGAATTGATCATACTC+TGG | + | chr7_2:88007932-88007951 | None:intergenic | 30.0% | |
| TCAATTCTCTTTCTCTTCAA+TGG | - | chr7_2:88007940-88007959 | Msa1087280:intron | 30.0% | |
| CGTATCTGTAAATAAGGAAA+TGG | + | chr7_2:88008039-88008058 | None:intergenic | 30.0% | |
| AATGATGGTCCTCAAATAAA+AGG | - | chr7_2:88008151-88008170 | Msa1087280:intron | 30.0% | |
| ! | AGAAGGTATAAAAAATCTGG+TGG | - | chr7_2:88008408-88008427 | Msa1087280:CDS | 30.0% |
| ATCTGCACAGTTGAAAAAAA+TGG | + | chr7_2:88008545-88008564 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCAACTGTGCAGA+TGG | - | chr7_2:88008544-88008563 | Msa1087280:intron | 30.0% |
| ATGAATATATTCAAGACCTC+TGG | + | chr7_2:88007647-88007666 | None:intergenic | 30.0% | |
| ! | TTTCTGATTTTATATCGCGA+TGG | + | chr7_2:88007693-88007712 | None:intergenic | 30.0% |
| AACTTCATCAACTATAGTTG+CGG | - | chr7_2:88007883-88007902 | Msa1087280:CDS | 30.0% | |
| AAAGAGAATTGATCATACTC+TGG | + | chr7_2:88007932-88007951 | None:intergenic | 30.0% | |
| TCAATTCTCTTTCTCTTCAA+TGG | - | chr7_2:88007940-88007959 | Msa1087280:intron | 30.0% | |
| CGTATCTGTAAATAAGGAAA+TGG | + | chr7_2:88008039-88008058 | None:intergenic | 30.0% | |
| AATGATGGTCCTCAAATAAA+AGG | - | chr7_2:88008151-88008170 | Msa1087280:intron | 30.0% | |
| ! | AGAAGGTATAAAAAATCTGG+TGG | - | chr7_2:88008408-88008427 | Msa1087280:CDS | 30.0% |
| ATCTGCACAGTTGAAAAAAA+TGG | + | chr7_2:88008545-88008564 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCAACTGTGCAGA+TGG | - | chr7_2:88008544-88008563 | Msa1087280:intron | 30.0% |
| ATATCGCGATGGATATATAC+AGG | + | chr7_2:88007682-88007701 | None:intergenic | 35.0% | |
| ! | AGACAAAAGCTTTTGTGCAA+AGG | - | chr7_2:88007723-88007742 | Msa1087280:intron | 35.0% |
| CACATGCGTATCTGTAAATA+AGG | + | chr7_2:88008045-88008064 | None:intergenic | 35.0% | |
| CTTATTTACAGATACGCATG+TGG | - | chr7_2:88008043-88008062 | Msa1087280:CDS | 35.0% | |
| ! | TTGAGGACCATCATTGATTA+CGG | + | chr7_2:88008146-88008165 | None:intergenic | 35.0% |
| TATGAGCAAGATCCAATAGA+AGG | - | chr7_2:88008391-88008410 | Msa1087280:CDS | 35.0% | |
| ! | CTCAATTGATTCAGTTTGCA+AGG | - | chr7_2:88008453-88008472 | Msa1087280:intron | 35.0% |
| ! | TAGCAAAAGCATGTACAATG+AGG | - | chr7_2:88008573-88008592 | Msa1087280:exon | 35.0% |
| ! | AGCAAAAGCATGTACAATGA+GGG | - | chr7_2:88008574-88008593 | Msa1087280:exon | 35.0% |
| TAACTTCTACAACTGAGGAT+TGG | - | chr7_2:88008648-88008667 | Msa1087280:intron | 35.0% | |
| TGTTCAACTAGGAATGTGTA+AGG | + | chr7_2:88008776-88008795 | None:intergenic | 35.0% | |
| TTCAGCTTAAGTGTTCAACT+AGG | + | chr7_2:88008787-88008806 | None:intergenic | 35.0% | |
| ATATCGCGATGGATATATAC+AGG | + | chr7_2:88007682-88007701 | None:intergenic | 35.0% | |
| ! | AGACAAAAGCTTTTGTGCAA+AGG | - | chr7_2:88007723-88007742 | Msa1087280:intron | 35.0% |
| CACATGCGTATCTGTAAATA+AGG | + | chr7_2:88008045-88008064 | None:intergenic | 35.0% | |
| CTTATTTACAGATACGCATG+TGG | - | chr7_2:88008043-88008062 | Msa1087280:CDS | 35.0% | |
| ! | TTGAGGACCATCATTGATTA+CGG | + | chr7_2:88008146-88008165 | None:intergenic | 35.0% |
| TATGAGCAAGATCCAATAGA+AGG | - | chr7_2:88008391-88008410 | Msa1087280:CDS | 35.0% | |
| ! | CTCAATTGATTCAGTTTGCA+AGG | - | chr7_2:88008453-88008472 | Msa1087280:intron | 35.0% |
| ! | TAGCAAAAGCATGTACAATG+AGG | - | chr7_2:88008573-88008592 | Msa1087280:exon | 35.0% |
| ! | AGCAAAAGCATGTACAATGA+GGG | - | chr7_2:88008574-88008593 | Msa1087280:exon | 35.0% |
| TAACTTCTACAACTGAGGAT+TGG | - | chr7_2:88008648-88008667 | Msa1087280:intron | 35.0% | |
| TGTTCAACTAGGAATGTGTA+AGG | + | chr7_2:88008776-88008795 | None:intergenic | 35.0% | |
| TTCAGCTTAAGTGTTCAACT+AGG | + | chr7_2:88008787-88008806 | None:intergenic | 35.0% | |
| !! | TTATCCAAGCTTGCTGATGT+TGG | - | chr7_2:88007854-88007873 | Msa1087280:CDS | 40.0% |
| ATTTCCAACATCAGCAAGCT+TGG | + | chr7_2:88007861-88007880 | None:intergenic | 40.0% | |
| TTCATCAACTATAGTTGCGG+AGG | - | chr7_2:88007886-88007905 | Msa1087280:CDS | 40.0% | |
| TCATCAACTATAGTTGCGGA+GGG | - | chr7_2:88007887-88007906 | Msa1087280:CDS | 40.0% | |
| GAGAATTGATCATACTCTGG+TGG | + | chr7_2:88007929-88007948 | None:intergenic | 40.0% | |
| AAGGCGTAGACATCTACTTT+CGG | + | chr7_2:88008085-88008104 | None:intergenic | 40.0% | |
| AAAGTAGATGTCTACGCCTT+TGG | - | chr7_2:88008085-88008104 | Msa1087280:CDS | 40.0% | |
| TTCGTACAGAACAACACCAA+AGG | + | chr7_2:88008104-88008123 | None:intergenic | 40.0% | |
| AAAGCAGCCGTAATCAATGA+TGG | - | chr7_2:88008136-88008155 | Msa1087280:intron | 40.0% | |
| TCCTCAAATAAAAGGCCTTG+TGG | - | chr7_2:88008159-88008178 | Msa1087280:intron | 40.0% | |
| ! | TGGCAGTTTGATGAAGTGTT+TGG | - | chr7_2:88008367-88008386 | Msa1087280:CDS | 40.0% |
| GAGTAGTTATCTCCAAGTCT+AGG | + | chr7_2:88008436-88008455 | None:intergenic | 40.0% | |
| TCCAAGTATGAGATCGATTG+TGG | - | chr7_2:88008610-88008629 | Msa1087280:five_prime_UTR | 40.0% | |
| ACCACAATCGATCTCATACT+TGG | + | chr7_2:88008614-88008633 | None:intergenic | 40.0% | |
| GACACTAACTTCTACAACTG+AGG | - | chr7_2:88008643-88008662 | Msa1087280:five_prime_UTR | 40.0% | |
| AAGTTTCCGTCGATGCATAA+AGG | - | chr7_2:88008838-88008857 | Msa1087280:five_prime_UTR | 40.0% | |
| TGTTGACCTTTATGCATCGA+CGG | + | chr7_2:88008847-88008866 | None:intergenic | 40.0% | |
| GAGCAGTAGATATCACATTG+AGG | - | chr7_2:88008900-88008919 | Msa1087280:five_prime_UTR | 40.0% | |
| !! | TTATCCAAGCTTGCTGATGT+TGG | - | chr7_2:88007854-88007873 | Msa1087280:CDS | 40.0% |
| ATTTCCAACATCAGCAAGCT+TGG | + | chr7_2:88007861-88007880 | None:intergenic | 40.0% | |
| TTCATCAACTATAGTTGCGG+AGG | - | chr7_2:88007886-88007905 | Msa1087280:CDS | 40.0% | |
| TCATCAACTATAGTTGCGGA+GGG | - | chr7_2:88007887-88007906 | Msa1087280:CDS | 40.0% | |
| GAGAATTGATCATACTCTGG+TGG | + | chr7_2:88007929-88007948 | None:intergenic | 40.0% | |
| AAGGCGTAGACATCTACTTT+CGG | + | chr7_2:88008085-88008104 | None:intergenic | 40.0% | |
| AAAGTAGATGTCTACGCCTT+TGG | - | chr7_2:88008085-88008104 | Msa1087280:CDS | 40.0% | |
| TTCGTACAGAACAACACCAA+AGG | + | chr7_2:88008104-88008123 | None:intergenic | 40.0% | |
| AAAGCAGCCGTAATCAATGA+TGG | - | chr7_2:88008136-88008155 | Msa1087280:intron | 40.0% | |
| TCCTCAAATAAAAGGCCTTG+TGG | - | chr7_2:88008159-88008178 | Msa1087280:intron | 40.0% | |
| ! | TGGCAGTTTGATGAAGTGTT+TGG | - | chr7_2:88008367-88008386 | Msa1087280:CDS | 40.0% |
| GAGTAGTTATCTCCAAGTCT+AGG | + | chr7_2:88008436-88008455 | None:intergenic | 40.0% | |
| TCCAAGTATGAGATCGATTG+TGG | - | chr7_2:88008610-88008629 | Msa1087280:five_prime_UTR | 40.0% | |
| ACCACAATCGATCTCATACT+TGG | + | chr7_2:88008614-88008633 | None:intergenic | 40.0% | |
| GACACTAACTTCTACAACTG+AGG | - | chr7_2:88008643-88008662 | Msa1087280:five_prime_UTR | 40.0% | |
| AAGTTTCCGTCGATGCATAA+AGG | - | chr7_2:88008838-88008857 | Msa1087280:five_prime_UTR | 40.0% | |
| TGTTGACCTTTATGCATCGA+CGG | + | chr7_2:88008847-88008866 | None:intergenic | 40.0% | |
| GAGCAGTAGATATCACATTG+AGG | - | chr7_2:88008900-88008919 | Msa1087280:five_prime_UTR | 40.0% | |
| TAAGACGGGCGTTACATACA+AGG | - | chr7_2:88007599-88007618 | Msa1087280:three_prime_UTR | 45.0% | |
| ! | CATTATTCCTTTTGCACCGC+AGG | - | chr7_2:88007817-88007836 | Msa1087280:CDS | 45.0% |
| AATCCAAAATCCGCAACCTG+CGG | + | chr7_2:88007836-88007855 | None:intergenic | 45.0% | |
| ! | ATAGTTGCGGAGGGTACATT+CGG | - | chr7_2:88007896-88007915 | Msa1087280:CDS | 45.0% |
| !! | GCCACAAGGCCTTTTATTTG+AGG | + | chr7_2:88008163-88008182 | None:intergenic | 45.0% |
| ! | AATAAAAGGCCTTGTGGCTG+TGG | - | chr7_2:88008165-88008184 | Msa1087280:intron | 45.0% |
| ! | AATCTGGTGGATCCTAGACT+TGG | - | chr7_2:88008421-88008440 | Msa1087280:CDS | 45.0% |
| ! | TGCAAGGTACCAGTTGTGTA+AGG | - | chr7_2:88008469-88008488 | Msa1087280:intron | 45.0% |
| CTCATACTTGGACGTAGTTG+TGG | + | chr7_2:88008602-88008621 | None:intergenic | 45.0% | |
| TAAGACGGGCGTTACATACA+AGG | - | chr7_2:88007599-88007618 | Msa1087280:three_prime_UTR | 45.0% | |
| ! | CATTATTCCTTTTGCACCGC+AGG | - | chr7_2:88007817-88007836 | Msa1087280:CDS | 45.0% |
| AATCCAAAATCCGCAACCTG+CGG | + | chr7_2:88007836-88007855 | None:intergenic | 45.0% | |
| ! | ATAGTTGCGGAGGGTACATT+CGG | - | chr7_2:88007896-88007915 | Msa1087280:CDS | 45.0% |
| !! | GCCACAAGGCCTTTTATTTG+AGG | + | chr7_2:88008163-88008182 | None:intergenic | 45.0% |
| ! | AATAAAAGGCCTTGTGGCTG+TGG | - | chr7_2:88008165-88008184 | Msa1087280:intron | 45.0% |
| ! | AATCTGGTGGATCCTAGACT+TGG | - | chr7_2:88008421-88008440 | Msa1087280:CDS | 45.0% |
| ! | TGCAAGGTACCAGTTGTGTA+AGG | - | chr7_2:88008469-88008488 | Msa1087280:intron | 45.0% |
| CTCATACTTGGACGTAGTTG+TGG | + | chr7_2:88008602-88008621 | None:intergenic | 45.0% | |
| TACAAGGCTGCAAATTGCGC+TGG | - | chr7_2:88007615-88007634 | Msa1087280:three_prime_UTR | 50.0% | |
| TACAAGGCTGCAAATTGCGC+TGG | - | chr7_2:88007615-88007634 | Msa1087280:three_prime_UTR | 50.0% | |
| ATTGCGCTGGATTCAGCCAG+AGG | - | chr7_2:88007628-88007647 | Msa1087280:three_prime_UTR | 55.0% | |
| ! | TCCTTTTGCACCGCAGGTTG+CGG | - | chr7_2:88007823-88007842 | Msa1087280:CDS | 55.0% |
| GGAGAATCACCACAGCCACA+AGG | + | chr7_2:88008177-88008196 | None:intergenic | 55.0% | |
| ATTGCGCTGGATTCAGCCAG+AGG | - | chr7_2:88007628-88007647 | Msa1087280:three_prime_UTR | 55.0% | |
| ! | TCCTTTTGCACCGCAGGTTG+CGG | - | chr7_2:88007823-88007842 | Msa1087280:CDS | 55.0% |
| GGAGAATCACCACAGCCACA+AGG | + | chr7_2:88008177-88008196 | None:intergenic | 55.0% | |
| TCCGCAACCTGCGGTGCAAA+AGG | + | chr7_2:88007827-88007846 | None:intergenic | 60.0% | |
| ! | GCACCGCAGGTTGCGGATTT+TGG | - | chr7_2:88007830-88007849 | Msa1087280:CDS | 60.0% |
| TCCGCAACCTGCGGTGCAAA+AGG | + | chr7_2:88007827-88007846 | None:intergenic | 60.0% | |
| ! | GCACCGCAGGTTGCGGATTT+TGG | - | chr7_2:88007830-88007849 | Msa1087280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 88007545 | 88008958 | 88007545 | ID=Msa1087280;Name=Msa1087280 |
| chr7_2 | mRNA | 88007545 | 88008958 | 88007545 | ID=Msa1087280-mRNA-1;Parent=Msa1087280;Name=Msa1087280-mRNA-1;_AED=0.10;_eAED=0.10;_QI=284|1|1|1|0.6|0.5|6|166|132 |
| chr7_2 | exon | 88007545 | 88007722 | 88007545 | ID=Msa1087280-mRNA-1:exon:24042;Parent=Msa1087280-mRNA-1 |
| chr7_2 | exon | 88007800 | 88007940 | 88007800 | ID=Msa1087280-mRNA-1:exon:24041;Parent=Msa1087280-mRNA-1 |
| chr7_2 | exon | 88008029 | 88008130 | 88008029 | ID=Msa1087280-mRNA-1:exon:24040;Parent=Msa1087280-mRNA-1 |
| chr7_2 | exon | 88008317 | 88008449 | 88008317 | ID=Msa1087280-mRNA-1:exon:24039;Parent=Msa1087280-mRNA-1 |
| chr7_2 | exon | 88008570 | 88008664 | 88008570 | ID=Msa1087280-mRNA-1:exon:24038;Parent=Msa1087280-mRNA-1 |
| chr7_2 | exon | 88008759 | 88008958 | 88008759 | ID=Msa1087280-mRNA-1:exon:24037;Parent=Msa1087280-mRNA-1 |
| chr7_2 | five_prime_UTR | 88008759 | 88008958 | 88008759 | ID=Msa1087280-mRNA-1:five_prime_utr;Parent=Msa1087280-mRNA-1 |
| chr7_2 | five_prime_UTR | 88008581 | 88008664 | 88008581 | ID=Msa1087280-mRNA-1:five_prime_utr;Parent=Msa1087280-mRNA-1 |
| chr7_2 | CDS | 88008570 | 88008580 | 88008570 | ID=Msa1087280-mRNA-1:cds;Parent=Msa1087280-mRNA-1 |
| chr7_2 | CDS | 88008317 | 88008449 | 88008317 | ID=Msa1087280-mRNA-1:cds;Parent=Msa1087280-mRNA-1 |
| chr7_2 | CDS | 88008029 | 88008130 | 88008029 | ID=Msa1087280-mRNA-1:cds;Parent=Msa1087280-mRNA-1 |
| chr7_2 | CDS | 88007800 | 88007940 | 88007800 | ID=Msa1087280-mRNA-1:cds;Parent=Msa1087280-mRNA-1 |
| chr7_2 | CDS | 88007711 | 88007722 | 88007711 | ID=Msa1087280-mRNA-1:cds;Parent=Msa1087280-mRNA-1 |
| chr7_2 | three_prime_UTR | 88007545 | 88007710 | 88007545 | ID=Msa1087280-mRNA-1:three_prime_utr;Parent=Msa1087280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
