Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087450 | KEH17998.1 | 82.653 | 196 | 34 | 0 | 1 | 196 | 1 | 196 | 1.43e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087450 | sp|Q9SCS4|LBD28_ARATH | 28.696 | 115 | 81 | 1 | 1 | 114 | 3 | 117 | 3.69e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087450 | A0A072TMD2 | 82.653 | 196 | 34 | 0 | 1 | 196 | 1 | 196 | 6.84e-117 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1087450 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087450 | MtrunA17_Chr8g0337271 | 82.653 | 196 | 34 | 0 | 1 | 196 | 1 | 196 | 1.32e-120 | 339 |
| Msa1087450 | MtrunA17_Chr8g0358731 | 34.328 | 201 | 95 | 6 | 1 | 199 | 1 | 166 | 3.56e-26 | 99.0 |
| Msa1087450 | MtrunA17_Chr6g0452691 | 27.211 | 147 | 100 | 2 | 10 | 149 | 9 | 155 | 3.90e-12 | 62.4 |
| Msa1087450 | MtrunA17_Chr5g0439111 | 27.660 | 141 | 96 | 4 | 10 | 148 | 9 | 145 | 1.21e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087450 | AT3G50510.1 | 28.696 | 115 | 81 | 1 | 1 | 114 | 3 | 117 | 3.75e-14 | 68.2 |
| Msa1087450 | AT3G50510.2 | 28.696 | 115 | 81 | 1 | 1 | 114 | 3 | 117 | 3.75e-14 | 68.2 |
| Msa1087450 | AT2G19820.1 | 31.183 | 93 | 63 | 1 | 5 | 96 | 7 | 99 | 7.96e-13 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCAAGGATGTGCTTATT+TGG | 0.063042 | 7_3:-198400 | None:intergenic |
| TCAGTGTGTTATTCAAATTT+TGG | 0.145999 | 7_3:+198235 | Msa1087450:CDS |
| CTGACTTAAACTTGAGTATA+TGG | 0.197296 | 7_3:+198516 | Msa1087450:CDS |
| CAAATTCCCCATCTTACTTT+GGG | 0.270367 | 7_3:-199006 | None:intergenic |
| CATGACACTGATTGTGAATT+TGG | 0.306396 | 7_3:+198179 | Msa1087450:CDS |
| ATCCAAGGATGTGCTTATTT+GGG | 0.326625 | 7_3:-198399 | None:intergenic |
| TCAAATTCCCCATCTTACTT+TGG | 0.356414 | 7_3:-199007 | None:intergenic |
| TCTTGGACACCAATTGGAGC+TGG | 0.391570 | 7_3:+198373 | Msa1087450:CDS |
| AAAGTCTTCATCCTCATTAC+TGG | 0.397078 | 7_3:-198981 | None:intergenic |
| TTCATCAGCCACCATTCCCT+TGG | 0.409411 | 7_3:-198924 | None:intergenic |
| TGTCCAAGAAAACCCCGATC+TGG | 0.424943 | 7_3:-198359 | None:intergenic |
| TTTGGGCACCCAGCTCCAAT+TGG | 0.428496 | 7_3:-198382 | None:intergenic |
| TTAATTGCATAATTCTCATC+AGG | 0.430232 | 7_3:-198268 | None:intergenic |
| GGGAATGGTGGCTGATGAAA+AGG | 0.430935 | 7_3:+198928 | Msa1087450:CDS |
| TGACTTAAACTTGAGTATAT+GGG | 0.443514 | 7_3:+198517 | Msa1087450:CDS |
| CTTGGACACCAATTGGAGCT+GGG | 0.456606 | 7_3:+198374 | Msa1087450:CDS |
| TTGGCGAAGTAACCCAGATC+GGG | 0.470404 | 7_3:+198346 | Msa1087450:CDS |
| TGCCCAAATAAGCACATCCT+TGG | 0.475102 | 7_3:+198397 | Msa1087450:CDS |
| AGCAATTTCAATTTCATCCA+AGG | 0.478006 | 7_3:-198414 | None:intergenic |
| CATATACTCAAGTTTAAGTC+AGG | 0.479889 | 7_3:-198515 | None:intergenic |
| TCTCCTCTTTCACAAGTACA+TGG | 0.497829 | 7_3:-198766 | None:intergenic |
| TCCTTCTGTGAGAAGCGAAT+CGG | 0.511515 | 7_3:-198318 | None:intergenic |
| TACTGAACACATGGGTGACA+TGG | 0.514848 | 7_3:+198714 | Msa1087450:CDS |
| GCCGATTCGCTTCTCACAGA+AGG | 0.517177 | 7_3:+198317 | Msa1087450:CDS |
| ATTCCATGTACTTGTGAAAG+AGG | 0.523001 | 7_3:+198763 | Msa1087450:CDS |
| TGTACACAGTAATGCATCCA+AGG | 0.526625 | 7_3:+198907 | Msa1087450:intron |
| GTCCAAGAAAACCCCGATCT+GGG | 0.526848 | 7_3:-198358 | None:intergenic |
| CTGAAAGTCAGCATGCCTAC+TGG | 0.528158 | 7_3:-198216 | None:intergenic |
| TGTGCCGACATATGAGAAGA+AGG | 0.531308 | 7_3:+198156 | Msa1087450:CDS |
| GTGGCTGATGAAAAGGGAAA+AGG | 0.537842 | 7_3:+198935 | Msa1087450:CDS |
| CTTGGCGAAGTAACCCAGAT+CGG | 0.540526 | 7_3:+198345 | Msa1087450:CDS |
| CATGCCTTCTTCTCATATGT+CGG | 0.541385 | 7_3:-198160 | None:intergenic |
| GTCTTCATCCTCATTACTGG+TGG | 0.547436 | 7_3:-198978 | None:intergenic |
| GCAACAATTTGTCTTTGATG+TGG | 0.547669 | 7_3:-198296 | None:intergenic |
| TTCTCACAGAAGGAGAAGCT+TGG | 0.549947 | 7_3:+198327 | Msa1087450:CDS |
| GTGCAAGAAGGCATGGAAGA+AGG | 0.556829 | 7_3:-198485 | None:intergenic |
| AAATTCCCCATCTTACTTTG+GGG | 0.573119 | 7_3:-199005 | None:intergenic |
| CAGTAATGCATCCAAGGGAA+TGG | 0.575632 | 7_3:+198913 | Msa1087450:intron |
| AATTTGAGTGCAAGAAGGCA+TGG | 0.581783 | 7_3:-198492 | None:intergenic |
| AAATGCATCAGAGAAATACA+AGG | 0.593981 | 7_3:+198117 | None:intergenic |
| TAATGCATCCAAGGGAATGG+TGG | 0.611462 | 7_3:+198916 | Msa1087450:CDS |
| ACAAGGACCCACCAGTAATG+AGG | 0.613595 | 7_3:+198970 | Msa1087450:CDS |
| CTTGTGAAAGAGGAGAATCA+AGG | 0.617523 | 7_3:+198773 | Msa1087450:CDS |
| GGAATGGTGGCTGATGAAAA+GGG | 0.618900 | 7_3:+198929 | Msa1087450:CDS |
| CATGGGTGACATGGACATCA+CGG | 0.621521 | 7_3:+198723 | Msa1087450:CDS |
| TCAGGAATTTGAGTGCAAGA+AGG | 0.621914 | 7_3:-198497 | None:intergenic |
| TTAATAGAGTACTGAACACA+TGG | 0.626411 | 7_3:+198705 | Msa1087450:intron |
| GTACACAGTAATGCATCCAA+GGG | 0.631300 | 7_3:+198908 | Msa1087450:intron |
| TCTTCATCCTCATTACTGGT+GGG | 0.637097 | 7_3:-198977 | None:intergenic |
| AAAGGAATTCTTAATGAACA+AGG | 0.657272 | 7_3:+198953 | Msa1087450:CDS |
| TGGCGAAGTAACCCAGATCG+GGG | 0.667644 | 7_3:+198347 | Msa1087450:CDS |
| ATCACGGAACAAGACATGCA+AGG | 0.684891 | 7_3:+198739 | Msa1087450:CDS |
| AATGCATCAGAGAAATACAA+GGG | 0.687321 | 7_3:+198118 | None:intergenic |
| TAATAGAGTACTGAACACAT+GGG | 0.740993 | 7_3:+198706 | Msa1087450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAGAATGATAGATTT+TGG | - | chr7_3:198661-198680 | None:intergenic | 20.0% |
| !!! | TTGAAAAGAATGATAGATTT+TGG | - | chr7_3:198661-198680 | None:intergenic | 20.0% |
| !!! | TCAGTGTGTTATTCAAATTT+TGG | + | chr7_3:198235-198254 | Msa1087450:CDS | 25.0% |
| !!! | CAGTGTGTTATTCAAATTTT+GGG | + | chr7_3:198236-198255 | Msa1087450:CDS | 25.0% |
| !!! | AGTGTGTTATTCAAATTTTG+GGG | + | chr7_3:198237-198256 | Msa1087450:CDS | 25.0% |
| ! | TTAATTGCATAATTCTCATC+AGG | - | chr7_3:198271-198290 | None:intergenic | 25.0% |
| ! | TGACTTAAACTTGAGTATAT+GGG | + | chr7_3:198517-198536 | Msa1087450:CDS | 25.0% |
| ! | AAAGGAATTCTTAATGAACA+AGG | + | chr7_3:198953-198972 | Msa1087450:CDS | 25.0% |
| !!! | TCAGTGTGTTATTCAAATTT+TGG | + | chr7_3:198235-198254 | Msa1087450:CDS | 25.0% |
| !!! | CAGTGTGTTATTCAAATTTT+GGG | + | chr7_3:198236-198255 | Msa1087450:CDS | 25.0% |
| !!! | AGTGTGTTATTCAAATTTTG+GGG | + | chr7_3:198237-198256 | Msa1087450:CDS | 25.0% |
| ! | TTAATTGCATAATTCTCATC+AGG | - | chr7_3:198271-198290 | None:intergenic | 25.0% |
| ! | TGACTTAAACTTGAGTATAT+GGG | + | chr7_3:198517-198536 | Msa1087450:CDS | 25.0% |
| ! | AAAGGAATTCTTAATGAACA+AGG | + | chr7_3:198953-198972 | Msa1087450:CDS | 25.0% |
| AGCAATTTCAATTTCATCCA+AGG | - | chr7_3:198417-198436 | None:intergenic | 30.0% | |
| CATATACTCAAGTTTAAGTC+AGG | - | chr7_3:198518-198537 | None:intergenic | 30.0% | |
| CTGACTTAAACTTGAGTATA+TGG | + | chr7_3:198516-198535 | Msa1087450:CDS | 30.0% | |
| ATGTGTTCAGTACTCTATTA+AGG | - | chr7_3:198706-198725 | None:intergenic | 30.0% | |
| !! | TTAATAGAGTACTGAACACA+TGG | + | chr7_3:198705-198724 | Msa1087450:intron | 30.0% |
| !! | TAATAGAGTACTGAACACAT+GGG | + | chr7_3:198706-198725 | Msa1087450:intron | 30.0% |
| AGCAATTTCAATTTCATCCA+AGG | - | chr7_3:198417-198436 | None:intergenic | 30.0% | |
| CATATACTCAAGTTTAAGTC+AGG | - | chr7_3:198518-198537 | None:intergenic | 30.0% | |
| CTGACTTAAACTTGAGTATA+TGG | + | chr7_3:198516-198535 | Msa1087450:CDS | 30.0% | |
| ATGTGTTCAGTACTCTATTA+AGG | - | chr7_3:198706-198725 | None:intergenic | 30.0% | |
| !! | TTAATAGAGTACTGAACACA+TGG | + | chr7_3:198705-198724 | Msa1087450:intron | 30.0% |
| !! | TAATAGAGTACTGAACACAT+GGG | + | chr7_3:198706-198725 | Msa1087450:intron | 30.0% |
| ! | CATGACACTGATTGTGAATT+TGG | + | chr7_3:198179-198198 | Msa1087450:CDS | 35.0% |
| GCAACAATTTGTCTTTGATG+TGG | - | chr7_3:198299-198318 | None:intergenic | 35.0% | |
| ATCCAAGGATGTGCTTATTT+GGG | - | chr7_3:198402-198421 | None:intergenic | 35.0% | |
| ATTCCATGTACTTGTGAAAG+AGG | + | chr7_3:198763-198782 | Msa1087450:CDS | 35.0% | |
| AAAGTCTTCATCCTCATTAC+TGG | - | chr7_3:198984-199003 | None:intergenic | 35.0% | |
| ! | CATGACACTGATTGTGAATT+TGG | + | chr7_3:198179-198198 | Msa1087450:CDS | 35.0% |
| GCAACAATTTGTCTTTGATG+TGG | - | chr7_3:198299-198318 | None:intergenic | 35.0% | |
| ATCCAAGGATGTGCTTATTT+GGG | - | chr7_3:198402-198421 | None:intergenic | 35.0% | |
| ATTCCATGTACTTGTGAAAG+AGG | + | chr7_3:198763-198782 | Msa1087450:CDS | 35.0% | |
| AAAGTCTTCATCCTCATTAC+TGG | - | chr7_3:198984-199003 | None:intergenic | 35.0% | |
| CATGCCTTCTTCTCATATGT+CGG | - | chr7_3:198163-198182 | None:intergenic | 40.0% | |
| ! | GTCAATACTTTTCGACCAGT+AGG | + | chr7_3:198201-198220 | Msa1087450:CDS | 40.0% |
| CATCCAAGGATGTGCTTATT+TGG | - | chr7_3:198403-198422 | None:intergenic | 40.0% | |
| AATTTGAGTGCAAGAAGGCA+TGG | - | chr7_3:198495-198514 | None:intergenic | 40.0% | |
| TCAGGAATTTGAGTGCAAGA+AGG | - | chr7_3:198500-198519 | None:intergenic | 40.0% | |
| TCTCCTCTTTCACAAGTACA+TGG | - | chr7_3:198769-198788 | None:intergenic | 40.0% | |
| CTTGTGAAAGAGGAGAATCA+AGG | + | chr7_3:198773-198792 | Msa1087450:CDS | 40.0% | |
| TGTACACAGTAATGCATCCA+AGG | + | chr7_3:198907-198926 | Msa1087450:intron | 40.0% | |
| GTACACAGTAATGCATCCAA+GGG | + | chr7_3:198908-198927 | Msa1087450:intron | 40.0% | |
| TCTTCATCCTCATTACTGGT+GGG | - | chr7_3:198980-198999 | None:intergenic | 40.0% | |
| CATGCCTTCTTCTCATATGT+CGG | - | chr7_3:198163-198182 | None:intergenic | 40.0% | |
| ! | GTCAATACTTTTCGACCAGT+AGG | + | chr7_3:198201-198220 | Msa1087450:CDS | 40.0% |
| CATCCAAGGATGTGCTTATT+TGG | - | chr7_3:198403-198422 | None:intergenic | 40.0% | |
| AATTTGAGTGCAAGAAGGCA+TGG | - | chr7_3:198495-198514 | None:intergenic | 40.0% | |
| TCAGGAATTTGAGTGCAAGA+AGG | - | chr7_3:198500-198519 | None:intergenic | 40.0% | |
| TCTCCTCTTTCACAAGTACA+TGG | - | chr7_3:198769-198788 | None:intergenic | 40.0% | |
| CTTGTGAAAGAGGAGAATCA+AGG | + | chr7_3:198773-198792 | Msa1087450:CDS | 40.0% | |
| TGTACACAGTAATGCATCCA+AGG | + | chr7_3:198907-198926 | Msa1087450:intron | 40.0% | |
| GTACACAGTAATGCATCCAA+GGG | + | chr7_3:198908-198927 | Msa1087450:intron | 40.0% | |
| TCTTCATCCTCATTACTGGT+GGG | - | chr7_3:198980-198999 | None:intergenic | 40.0% | |
| ! | TGTGCCGACATATGAGAAGA+AGG | + | chr7_3:198156-198175 | Msa1087450:CDS | 45.0% |
| TCCTTCTGTGAGAAGCGAAT+CGG | - | chr7_3:198321-198340 | None:intergenic | 45.0% | |
| TTCTCACAGAAGGAGAAGCT+TGG | + | chr7_3:198327-198346 | Msa1087450:CDS | 45.0% | |
| ! | GGGTTTTCTTGGACACCAAT+TGG | + | chr7_3:198367-198386 | Msa1087450:CDS | 45.0% |
| TGCCCAAATAAGCACATCCT+TGG | + | chr7_3:198397-198416 | Msa1087450:CDS | 45.0% | |
| TACTGAACACATGGGTGACA+TGG | + | chr7_3:198714-198733 | Msa1087450:CDS | 45.0% | |
| ATCACGGAACAAGACATGCA+AGG | + | chr7_3:198739-198758 | Msa1087450:CDS | 45.0% | |
| CAGTAATGCATCCAAGGGAA+TGG | + | chr7_3:198913-198932 | Msa1087450:intron | 45.0% | |
| TAATGCATCCAAGGGAATGG+TGG | + | chr7_3:198916-198935 | Msa1087450:CDS | 45.0% | |
| GGAATGGTGGCTGATGAAAA+GGG | + | chr7_3:198929-198948 | Msa1087450:CDS | 45.0% | |
| GTGGCTGATGAAAAGGGAAA+AGG | + | chr7_3:198935-198954 | Msa1087450:CDS | 45.0% | |
| GTCTTCATCCTCATTACTGG+TGG | - | chr7_3:198981-199000 | None:intergenic | 45.0% | |
| ! | TGTGCCGACATATGAGAAGA+AGG | + | chr7_3:198156-198175 | Msa1087450:CDS | 45.0% |
| TCCTTCTGTGAGAAGCGAAT+CGG | - | chr7_3:198321-198340 | None:intergenic | 45.0% | |
| TTCTCACAGAAGGAGAAGCT+TGG | + | chr7_3:198327-198346 | Msa1087450:CDS | 45.0% | |
| ! | GGGTTTTCTTGGACACCAAT+TGG | + | chr7_3:198367-198386 | Msa1087450:CDS | 45.0% |
| TGCCCAAATAAGCACATCCT+TGG | + | chr7_3:198397-198416 | Msa1087450:CDS | 45.0% | |
| TACTGAACACATGGGTGACA+TGG | + | chr7_3:198714-198733 | Msa1087450:CDS | 45.0% | |
| ATCACGGAACAAGACATGCA+AGG | + | chr7_3:198739-198758 | Msa1087450:CDS | 45.0% | |
| CAGTAATGCATCCAAGGGAA+TGG | + | chr7_3:198913-198932 | Msa1087450:intron | 45.0% | |
| TAATGCATCCAAGGGAATGG+TGG | + | chr7_3:198916-198935 | Msa1087450:CDS | 45.0% | |
| GGAATGGTGGCTGATGAAAA+GGG | + | chr7_3:198929-198948 | Msa1087450:CDS | 45.0% | |
| GTGGCTGATGAAAAGGGAAA+AGG | + | chr7_3:198935-198954 | Msa1087450:CDS | 45.0% | |
| GTCTTCATCCTCATTACTGG+TGG | - | chr7_3:198981-199000 | None:intergenic | 45.0% | |
| CTGAAAGTCAGCATGCCTAC+TGG | - | chr7_3:198219-198238 | None:intergenic | 50.0% | |
| CTTGGCGAAGTAACCCAGAT+CGG | + | chr7_3:198345-198364 | Msa1087450:CDS | 50.0% | |
| TTGGCGAAGTAACCCAGATC+GGG | + | chr7_3:198346-198365 | Msa1087450:CDS | 50.0% | |
| ! | AACCCAGATCGGGGTTTTCT+TGG | + | chr7_3:198356-198375 | Msa1087450:CDS | 50.0% |
| GTCCAAGAAAACCCCGATCT+GGG | - | chr7_3:198361-198380 | None:intergenic | 50.0% | |
| TGTCCAAGAAAACCCCGATC+TGG | - | chr7_3:198362-198381 | None:intergenic | 50.0% | |
| TCTTGGACACCAATTGGAGC+TGG | + | chr7_3:198373-198392 | Msa1087450:CDS | 50.0% | |
| CTTGGACACCAATTGGAGCT+GGG | + | chr7_3:198374-198393 | Msa1087450:CDS | 50.0% | |
| ! | GTGCAAGAAGGCATGGAAGA+AGG | - | chr7_3:198488-198507 | None:intergenic | 50.0% |
| CATGGGTGACATGGACATCA+CGG | + | chr7_3:198723-198742 | Msa1087450:CDS | 50.0% | |
| TTCATCAGCCACCATTCCCT+TGG | - | chr7_3:198927-198946 | None:intergenic | 50.0% | |
| GGGAATGGTGGCTGATGAAA+AGG | + | chr7_3:198928-198947 | Msa1087450:CDS | 50.0% | |
| ACAAGGACCCACCAGTAATG+AGG | + | chr7_3:198970-198989 | Msa1087450:CDS | 50.0% | |
| CTGAAAGTCAGCATGCCTAC+TGG | - | chr7_3:198219-198238 | None:intergenic | 50.0% | |
| CTTGGCGAAGTAACCCAGAT+CGG | + | chr7_3:198345-198364 | Msa1087450:CDS | 50.0% | |
| TTGGCGAAGTAACCCAGATC+GGG | + | chr7_3:198346-198365 | Msa1087450:CDS | 50.0% | |
| ! | AACCCAGATCGGGGTTTTCT+TGG | + | chr7_3:198356-198375 | Msa1087450:CDS | 50.0% |
| GTCCAAGAAAACCCCGATCT+GGG | - | chr7_3:198361-198380 | None:intergenic | 50.0% | |
| TGTCCAAGAAAACCCCGATC+TGG | - | chr7_3:198362-198381 | None:intergenic | 50.0% | |
| TCTTGGACACCAATTGGAGC+TGG | + | chr7_3:198373-198392 | Msa1087450:CDS | 50.0% | |
| CTTGGACACCAATTGGAGCT+GGG | + | chr7_3:198374-198393 | Msa1087450:CDS | 50.0% | |
| ! | GTGCAAGAAGGCATGGAAGA+AGG | - | chr7_3:198488-198507 | None:intergenic | 50.0% |
| CATGGGTGACATGGACATCA+CGG | + | chr7_3:198723-198742 | Msa1087450:CDS | 50.0% | |
| TTCATCAGCCACCATTCCCT+TGG | - | chr7_3:198927-198946 | None:intergenic | 50.0% | |
| GGGAATGGTGGCTGATGAAA+AGG | + | chr7_3:198928-198947 | Msa1087450:CDS | 50.0% | |
| ACAAGGACCCACCAGTAATG+AGG | + | chr7_3:198970-198989 | Msa1087450:CDS | 50.0% | |
| !! | GCCGATTCGCTTCTCACAGA+AGG | + | chr7_3:198317-198336 | Msa1087450:CDS | 55.0% |
| TGGCGAAGTAACCCAGATCG+GGG | + | chr7_3:198347-198366 | Msa1087450:CDS | 55.0% | |
| TTTGGGCACCCAGCTCCAAT+TGG | - | chr7_3:198385-198404 | None:intergenic | 55.0% | |
| !! | GCCGATTCGCTTCTCACAGA+AGG | + | chr7_3:198317-198336 | Msa1087450:CDS | 55.0% |
| TGGCGAAGTAACCCAGATCG+GGG | + | chr7_3:198347-198366 | Msa1087450:CDS | 55.0% | |
| TTTGGGCACCCAGCTCCAAT+TGG | - | chr7_3:198385-198404 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 198119 | 199015 | 198119 | ID=Msa1087450;Name=Msa1087450 |
| chr7_3 | mRNA | 198119 | 199015 | 198119 | ID=Msa1087450-mRNA-1;Parent=Msa1087450;Name=Msa1087450-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|200 |
| chr7_3 | exon | 198119 | 198538 | 198119 | ID=Msa1087450-mRNA-1:exon:79;Parent=Msa1087450-mRNA-1 |
| chr7_3 | exon | 198712 | 198794 | 198712 | ID=Msa1087450-mRNA-1:exon:80;Parent=Msa1087450-mRNA-1 |
| chr7_3 | exon | 198916 | 199015 | 198916 | ID=Msa1087450-mRNA-1:exon:81;Parent=Msa1087450-mRNA-1 |
| chr7_3 | CDS | 198119 | 198538 | 198119 | ID=Msa1087450-mRNA-1:cds;Parent=Msa1087450-mRNA-1 |
| chr7_3 | CDS | 198712 | 198794 | 198712 | ID=Msa1087450-mRNA-1:cds;Parent=Msa1087450-mRNA-1 |
| chr7_3 | CDS | 198916 | 199015 | 198916 | ID=Msa1087450-mRNA-1:cds;Parent=Msa1087450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
