AlfalfaGEDB | Msa1088730

M. sativa cultivar zhongmu-4 / Msa1088730

KEGG: -
GO: -
PFAM: PF02721.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088730	XP_013445477.2	92.749	593	41	2	1	592	1	592	0.0	1106

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088730	sp\|B5X561\|SHA_ARATH	42.445	589	257	9	1	583	1	513	1.49e-134	426

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088730	A0A396GKW5	92.749	593	41	2	1	592	1	592	0.0	1106

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TFs/TRs:

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Gene ID	Type	Classification
Msa1088730	TF	STAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088730	MtrunA17_Chr8g0359041	92.749	593	41	2	1	592	1	592	0.0	1106
Msa1088730	MtrunA17_Chr1g0167871	62.076	501	175	6	569	1065	197	686	0.0	625
Msa1088730	MtrunA17_Chr2g0304851	77.344	384	68	1	571	954	1	365	0.0	623
Msa1088730	MtrunA17_Chr5g0393521	52.941	323	121	5	821	1141	1	294	7.67e-106	334
Msa1088730	MtrunA17_Chr7g0231491	65.652	230	76	1	569	795	26	255	1.29e-97	310
Msa1088730	MtrunA17_Chr7g0223511	66.514	218	47	3	566	783	19	210	4.57e-89	286
Msa1088730	MtrunA17_Chr5g0393531	62.896	221	72	2	576	796	2	212	1.16e-87	281
Msa1088730	MtrunA17_Chr8g0347361	72.000	175	43	2	566	740	6	174	1.57e-78	256
Msa1088730	MtrunA17_Chr5g0420451	60.952	210	65	3	576	783	3	197	1.17e-77	254
Msa1088730	MtrunA17_Chr5g0417421	61.905	189	64	3	860	1047	108	289	2.59e-73	245

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088730	AT1G17040.3	42.445	589	257	9	1	583	1	513	7.77e-136	426
Msa1088730	AT1G17040.1	42.445	589	257	9	1	583	1	513	1.51e-135	426
Msa1088730	AT1G78540.3	42.687	588	284	11	1	583	1	540	3.76e-135	425
Msa1088730	AT1G78540.1	43.080	578	276	11	1	573	1	530	8.97e-135	425
Msa1088730	AT1G78540.2	42.687	588	284	11	1	583	1	540	1.83e-134	425
Msa1088730	AT1G17040.2	41.903	599	256	10	1	583	1	523	2.41e-132	418
Msa1088730	AT2G05642.1	23.720	586	338	24	593	1141	19	532	2.79e-19	93.6
Msa1088730	AT1G52950.1	22.967	418	284	14	583	978	8	409	1.07e-15	82.4

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Find 278 sgRNAs with CRISPR-Local

Find 1050 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACTTCATCAAAGA+GGG	0.616443	7_3:-2085269	Msa1088730:CDS
AAACAGCCTTGTAACCAGTT+GGG	0.560474	7_3:+2087612	None:intergenic
AAACAGTGAGAACATCATCA+AGG	0.614693	7_3:+2085174	None:intergenic
AAACCAACCCACTGATGAAG+AGG	0.534477	7_3:-2094365	Msa1088730:CDS
AAACCTCTTCATCAGTGGGT+TGG	0.490109	7_3:+2094362	None:intergenic
AAACCTGTATCATGTTACTG+CGG	0.742791	7_3:+2086099	None:intergenic
AAAGGATAATCTCCTAATTT+TGG	0.151104	7_3:+2094558	None:intergenic
AAAGTTAGACAATGTGTATG+TGG	0.612301	7_3:+2087565	None:intergenic
AAAGTTCATTAAGTTTAACA+AGG	0.620574	7_3:-2087052	Msa1088730:CDS
AAATGGACTGTTGTTAAGGA+TGG	0.564477	7_3:-2087785	Msa1088730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAATGAGAAAGAACGAA+GGG	-	chr7_3:2085134-2085153	Msa1088730:three_prime_UTR	30.0%
TAAGCTGAAGGATTTATGTT+TGG	-	chr7_3:2085162-2085181	Msa1088730:three_prime_UTR	30.0%
ATGATTAACCTGATGAAGAA+TGG	+	chr7_3:2085263-2085282	None:intergenic	30.0%
ACTTGAGAACTATGTATGAA+TGG	+	chr7_3:2085599-2085618	None:intergenic	30.0%
CTTGGGTATTATAAGTGTTA+TGG	-	chr7_3:2085876-2085895	Msa1088730:CDS	30.0%
TATAAGTGTTATGGGATGTT+CGG	-	chr7_3:2085885-2085904	Msa1088730:CDS	30.0%
CCCTTAAAATCTAGCTATAA+TGG	+	chr7_3:2085939-2085958	None:intergenic	30.0%
AAACATGCAAACAGAAAAAG+GGG	+	chr7_3:2086180-2086199	None:intergenic	30.0%
AGTATACCAATTTAGCATTG+TGG	-	chr7_3:2086405-2086424	Msa1088730:CDS	30.0%
AGTAAACCACAATGCTAAAT+TGG	+	chr7_3:2086414-2086433	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	2084968	2099924	2084968	ID=Msa1088730;Name=Msa1088730
chr7_3	mRNA	2084968	2099924	2084968	ID=Msa1088730-mRNA-1;Parent=Msa1088730;Name=Msa1088730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=156\|1\|1\|1\|1\|1\|20\|272\|1141
chr7_3	exon	2084968	2085533	2084968	ID=Msa1088730-mRNA-1:exon:851;Parent=Msa1088730-mRNA-1
chr7_3	exon	2085641	2085742	2085641	ID=Msa1088730-mRNA-1:exon:850;Parent=Msa1088730-mRNA-1
chr7_3	exon	2085857	2086027	2085857	ID=Msa1088730-mRNA-1:exon:849;Parent=Msa1088730-mRNA-1
chr7_3	exon	2086103	2086223	2086103	ID=Msa1088730-mRNA-1:exon:848;Parent=Msa1088730-mRNA-1
chr7_3	exon	2086322	2086479	2086322	ID=Msa1088730-mRNA-1:exon:847;Parent=Msa1088730-mRNA-1
chr7_3	exon	2086572	2086713	2086572	ID=Msa1088730-mRNA-1:exon:846;Parent=Msa1088730-mRNA-1
chr7_3	exon	2086805	2086895	2086805	ID=Msa1088730-mRNA-1:exon:845;Parent=Msa1088730-mRNA-1
chr7_3	exon	2086992	2087116	2086992	ID=Msa1088730-mRNA-1:exon:844;Parent=Msa1088730-mRNA-1
chr7_3	exon	2087201	2087294	2087201	ID=Msa1088730-mRNA-1:exon:843;Parent=Msa1088730-mRNA-1
chr7_3	exon	2087390	2087657	2087390	ID=Msa1088730-mRNA-1:exon:842;Parent=Msa1088730-mRNA-1
chr7_3	exon	2087748	2087906	2087748	ID=Msa1088730-mRNA-1:exon:841;Parent=Msa1088730-mRNA-1
chr7_3	exon	2089204	2089366	2089204	ID=Msa1088730-mRNA-1:exon:840;Parent=Msa1088730-mRNA-1
chr7_3	exon	2091879	2092165	2091879	ID=Msa1088730-mRNA-1:exon:839;Parent=Msa1088730-mRNA-1
chr7_3	exon	2094260	2094628	2094260	ID=Msa1088730-mRNA-1:exon:838;Parent=Msa1088730-mRNA-1
chr7_3	exon	2096173	2096337	2096173	ID=Msa1088730-mRNA-1:exon:837;Parent=Msa1088730-mRNA-1
chr7_3	exon	2096441	2096518	2096441	ID=Msa1088730-mRNA-1:exon:836;Parent=Msa1088730-mRNA-1
chr7_3	exon	2097004	2097093	2097004	ID=Msa1088730-mRNA-1:exon:835;Parent=Msa1088730-mRNA-1
chr7_3	exon	2097234	2097443	2097234	ID=Msa1088730-mRNA-1:exon:834;Parent=Msa1088730-mRNA-1
chr7_3	exon	2098123	2098311	2098123	ID=Msa1088730-mRNA-1:exon:833;Parent=Msa1088730-mRNA-1
chr7_3	exon	2099619	2099924	2099619	ID=Msa1088730-mRNA-1:exon:832;Parent=Msa1088730-mRNA-1
chr7_3	five_prime_UTR	2099769	2099924	2099769	ID=Msa1088730-mRNA-1:five_prime_utr;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2099619	2099768	2099619	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2098123	2098311	2098123	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2097234	2097443	2097234	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2097004	2097093	2097004	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2096441	2096518	2096441	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2096173	2096337	2096173	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2094260	2094628	2094260	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2091879	2092165	2091879	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2089204	2089366	2089204	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2087748	2087906	2087748	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2087390	2087657	2087390	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2087201	2087294	2087201	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2086992	2087116	2086992	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2086805	2086895	2086805	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2086572	2086713	2086572	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2086322	2086479	2086322	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2086103	2086223	2086103	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2085857	2086027	2085857	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2085641	2085742	2085641	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	CDS	2085240	2085533	2085240	ID=Msa1088730-mRNA-1:cds;Parent=Msa1088730-mRNA-1
chr7_3	three_prime_UTR	2084968	2085239	2084968	ID=Msa1088730-mRNA-1:three_prime_utr;Parent=Msa1088730-mRNA-1

Gene Sequence

>Msa1088730

ATGGGTAATGATGAAATGAGAAAGAACGAAGGGTACTGTAAGCTGAAGGATTTATGTTTGGATTTTGTTGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATCTCACTAAATCAACCACATTCCCTACCACCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGCTCCTTTTCTCGTTATCAACAATAATAAGAGAATCAATGTTTTGCCAGTTCTTTACTTACATGAAGAAGCTCCTGTTACTTGCATGGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAATTATATTCGGCTTCACATTAATGGGGAGATTGTAGGAGAAAAGTCACTGTCTTCCTTATTACATAAGGAATCCAATTCAAGTAATTTGAAGGAAATACATTTGGCCAACCTTTGTGGAGACAGTAGTGGTGTGCAGGGTTACGTGTACAATTATGAAGGATTCGATACTGTTTCTTCTATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCATCCATATCTGAGGTTGAAGAAGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGTAAAGCATCTTGTCGCAGGAATGTCTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAGCCTGTTGATATGGAGAATGAGGTTTTTGCTTCACTTGTGTATGCTGACACGGGGGCTCCAGTCGAGAATACAACTGATGACGAAGCACCCCTTTTGTCTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGGCCTAGTAAATTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAGCAGGTTGTTCCTCATCAGATTTTGTGTTCCAAAATTAGGAGATTATCCTTTCCTTCAGACAAACACCCGTCCGATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACGCTGGTGTGGAAAAAGTCAACTTATGCTCTTGAAAGACTCAATTTGTCGCAATCTTCAGCAATTGATGATGTGTCATTGGAAAGTATGAATTCTGGCCACGAAGAAAAAACCAACCCACTGATGAAGAGGTTTAGAGTTGGACTTGACAAGATATCTGTATCAGTTAAGGCCAACCCCACCATAAAGCAATCTGGGGTAGAATGTAATAATTCTCATGTATGGACTGCTAATCAGGTTGAGAATGGGTTTCCAAAAAGCTTGGATGGCCGATCTCTTAACTTTGAAGAAGCAGATGTCTCTCCATCTGAATCATCAGAGAGTACAGGGGAGAGAAATTCACCTTCAAATAGCATGGAAAGTAGAAGATATCAAATATCGGATATGACCATTTTCAAATACTGTCTGGCAGGCTTGGCTGAGAGATCTCAAATGCTTAAAGAAATTGCCATCTCTGCTTCAGACAAAGAAATTTCAGAGTTGGCTCATCATGTTTCACACTTTTCAGGATGTTCCCACCACAGAAACCAAATATTAATTTCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGCTGGCAATGTCTCCAAACAACCACCCCATTCCTTGGAAGAGCGCAGTGTATGAGGTTGAAGAGCAATTCATGAAGATTGCTTCTTGTGGGTCAAGATCTCTCTCTCATCAGGGCGCCAAAATGGAAAGACCAAAAGTAAGACCCGTCGAGTTCATTGCTGCAATCACAAACAAGAAAGATTTCTGGAAACTAGCTGTTCGGGTTAAGGACAAATGGACTGTTGTTAAGGATGGCAAGGAGCATTTAGAGTTGATCATAGTTGATGCCAAGGGAAATGACATTCAACTTGTTATCCCAACTGGTTACAAGGCTGTTTGTGACAAAGTCCTTCTAGAAAACACCACATACACATTGTCTAACTTTCAAGTACAAAAGAATGATGATGCATTCAAAGCCTCTGATCACAAGTATAAATTGATATGGACTGGTGGAACTAATGCTGATAATGTCAATGTCCACGACATCCCTAACCCTAGCATTAAGTTCAAGCCATTTTCTGAGATTGTGTCGGGAAAATGGCGTGCTGATCTCTTAGTTCATGTTATTGGAATTGTACATGAAATGCGCTACTGTCAGCTGAATGAAGGAACTGGGAAAAAGCTACAAGTTAACTTTGGTTTGAAAGACTTGAGTGACATTTCTGTAAACTGCACTTTATGGGAGGACTATGCTGCAAAGTTCATTAAGTTTAACAAGGATAGGAAGGAAGGTGGTCCTGTCATAGTTATGCTTAACTACTGCAAGATCAAAGAAGAAGGGCGGTTCCCATTAAGTGTATCAAATACTTACTCATTCACTAAGTTGTCCATCAATGAGAACATCCCTGAGATCAATCTCTTCAGGGAAAGTTTACCTAAAGATGAGCAGCTGATGTCATCTAGCCAGATCCAGTGTTCACAGTCTTATGGAAATACCCAAGTTGCTACTGAAGACGACCTTCTATCTAATTCCCAGATTCTGCCCCTGTCTCAGGTTATCCAGCTTGACGTGATAAGTTATTGTGTGACAGTTGCTAAGATTGAGAAAGTGAACTCGACCAAAAATGGTTGGTACTACTTTGCTTGTCACAAGTGTCCAAAGATTGCTAAAGGGGACAAACCTCCTTACACATGTGACGATGGGCATAACACTGAGACCGAGATTGTCAGGTACAAGCTTGAGATGGATGTATCCTATGACATGGACAGAACTGTTTTTGTCGTCTGGGACCGCGAGGTGACTCAGATGTTAGGGATATCTGCTGCCCAACTCCGCAGTAACATGATACAGGTTGGTATTACCAATCGCTTTGAATTTCCGACCATAATGGATGACTTGGCTGAAAAAACTATGGTCTTTAAGGTCAAATGGCAACCAAGGTGGAAATCATGCTCTGTTGTATGTTACAAAGAAGGAGAAGCTTTCACTGACCGAGTTAGGGCTAAGTTCCCCAACCTTGTGGAGGAGGCTGAACCAGAGATTGAGAATTTAGGTGCTGATGTGATGATGGACAACACAAATCCTAATCCAGCCGCTTCTAATGAAGATGTTACCATTTCAACTCACGACCTCTCTGCATCTTCTGAATATGACCCTGATGGTTTGACCCAGATTACACCAATCAGTGGCTTAAAGAATGCTGGACAACCCATGAGTTGCGAGAGTCTTTCTCAACTCACACCAGGTTCTTTCAATTCTGTTGCTGAAAAAGCAAATGCTCGTCCTACTGTTGAAATTACTCCTCATAAGATGGCTGCAACTGATGATTTTTGCAATGCTGGTGGCCATAATGAGATCACACCTGCAAAACAGACTTCATCAAAGAGGGTGAAGCTTATCAAACAAGAGAAAAAGTGA

Protein sequence

>Msa1088730

MGNDEMRKNEGYCKLKDLCLDFVEYDGTFSFCFWIYLTKSTTFPTTILHQIHSDISESAPFLVINNNKRINVLPVLYLHEEAPVTCMGPWTEVPHVTVDFEFPLEKWVHVGCEVCPNYIRLHINGEIVGEKSLSSLLHKESNSSNLKEIHLANLCGDSSGVQGYVYNYEGFDTVSSIKDHHLKDPPLKLSIDESSISEVEEESDGVWGIVGGKASCRRNVSLDVVLSDAFGQPVDMENEVFASLVYADTGAPVENTTDDEAPLLSSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDSRLFLIRFCVPKLGDYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALERLNLSQSSAIDDVSLESMNSGHEEKTNPLMKRFRVGLDKISVSVKANPTIKQSGVECNNSHVWTANQVENGFPKSLDGRSLNFEEADVSPSESSESTGERNSPSNSMESRRYQISDMTIFKYCLAGLAERSQMLKEIAISASDKEISELAHHVSHFSGCSHHRNQILISKRLIEDGTNLWLAMSPNNHPIPWKSAVYEVEEQFMKIASCGSRSLSHQGAKMERPKVRPVEFIAAITNKKDFWKLAVRVKDKWTVVKDGKEHLELIIVDAKGNDIQLVIPTGYKAVCDKVLLENTTYTLSNFQVQKNDDAFKASDHKYKLIWTGGTNADNVNVHDIPNPSIKFKPFSEIVSGKWRADLLVHVIGIVHEMRYCQLNEGTGKKLQVNFGLKDLSDISVNCTLWEDYAAKFIKFNKDRKEGGPVIVMLNYCKIKEEGRFPLSVSNTYSFTKLSINENIPEINLFRESLPKDEQLMSSSQIQCSQSYGNTQVATEDDLLSNSQILPLSQVIQLDVISYCVTVAKIEKVNSTKNGWYYFACHKCPKIAKGDKPPYTCDDGHNTETEIVRYKLEMDVSYDMDRTVFVVWDREVTQMLGISAAQLRSNMIQVGITNRFEFPTIMDDLAEKTMVFKVKWQPRWKSCSVVCYKEGEAFTDRVRAKFPNLVEEAEPEIENLGADVMMDNTNPNPAASNEDVTISTHDLSASSEYDPDGLTQITPISGLKNAGQPMSCESLSQLTPGSFNSVAEKANARPTVEITPHKMAATDDFCNAGGHNEITPAKQTSSKRVKLIKQEKK*