Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089420 | XP_013450953.1 | 98.201 | 278 | 4 | 1 | 1 | 278 | 1 | 277 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089420 | sp|Q00466|HAT7_ARATH | 51.864 | 295 | 104 | 11 | 1 | 271 | 22 | 302 | 3.95e-81 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089420 | A0A072U5Q1 | 98.201 | 278 | 4 | 1 | 1 | 278 | 1 | 277 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1089420 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089420 | MtrunA17_Chr6g0453021 | 98.201 | 278 | 4 | 1 | 1 | 278 | 1 | 277 | 0.0 | 561 |
| Msa1089420 | MtrunA17_Chr7g0217111 | 59.247 | 292 | 77 | 10 | 1 | 270 | 1 | 272 | 1.77e-104 | 305 |
| Msa1089420 | MtrunA17_Chr8g0362151 | 50.831 | 301 | 98 | 9 | 1 | 273 | 1 | 279 | 2.05e-80 | 244 |
| Msa1089420 | MtrunA17_Chr5g0416391 | 53.725 | 255 | 76 | 6 | 49 | 273 | 38 | 280 | 1.96e-72 | 224 |
| Msa1089420 | MtrunA17_Chr5g0415941 | 44.215 | 242 | 93 | 10 | 42 | 260 | 39 | 261 | 3.31e-40 | 142 |
| Msa1089420 | MtrunA17_Chr3g0119291 | 46.465 | 198 | 91 | 5 | 83 | 266 | 42 | 238 | 1.67e-39 | 138 |
| Msa1089420 | MtrunA17_Chr8g0381741 | 60.748 | 107 | 41 | 1 | 87 | 192 | 43 | 149 | 3.71e-37 | 133 |
| Msa1089420 | MtrunA17_Chr6g0450991 | 64.000 | 100 | 36 | 0 | 93 | 192 | 63 | 162 | 1.31e-36 | 131 |
| Msa1089420 | MtrunA17_Chr3g0123691 | 54.032 | 124 | 48 | 1 | 78 | 192 | 32 | 155 | 5.52e-36 | 130 |
| Msa1089420 | MtrunA17_Chr8g0362751 | 68.750 | 96 | 30 | 0 | 97 | 192 | 89 | 184 | 8.87e-36 | 129 |
| Msa1089420 | MtrunA17_Chr4g0060031 | 57.143 | 112 | 48 | 0 | 81 | 192 | 79 | 190 | 1.17e-34 | 127 |
| Msa1089420 | MtrunA17_Chr3g0127511 | 49.219 | 128 | 50 | 3 | 99 | 217 | 40 | 161 | 2.17e-28 | 108 |
| Msa1089420 | MtrunA17_Chr7g0265521 | 55.435 | 92 | 41 | 0 | 96 | 187 | 62 | 153 | 3.66e-28 | 108 |
| Msa1089420 | MtrunA17_Chr1g0179581 | 60.494 | 81 | 32 | 0 | 96 | 176 | 27 | 107 | 1.44e-26 | 100 |
| Msa1089420 | MtrunA17_Chr8g0346251 | 53.488 | 86 | 40 | 0 | 104 | 189 | 48 | 133 | 1.80e-25 | 101 |
| Msa1089420 | MtrunA17_Chr4g0055851 | 46.154 | 104 | 55 | 1 | 81 | 184 | 105 | 207 | 3.01e-20 | 87.8 |
| Msa1089420 | MtrunA17_Chr5g0403701 | 51.579 | 95 | 46 | 0 | 97 | 191 | 53 | 147 | 8.41e-20 | 85.1 |
| Msa1089420 | MtrunA17_Chr5g0403691 | 51.064 | 94 | 46 | 0 | 97 | 190 | 53 | 146 | 2.25e-19 | 84.3 |
| Msa1089420 | MtrunA17_Chr2g0308611 | 42.276 | 123 | 48 | 2 | 84 | 190 | 171 | 286 | 8.53e-18 | 82.0 |
| Msa1089420 | MtrunA17_Chr5g0400781 | 46.154 | 104 | 49 | 1 | 87 | 190 | 113 | 209 | 1.80e-17 | 80.1 |
| Msa1089420 | MtrunA17_Chr5g0399491 | 46.000 | 100 | 53 | 1 | 85 | 184 | 125 | 223 | 2.25e-17 | 80.1 |
| Msa1089420 | MtrunA17_Chr7g0258831 | 39.726 | 146 | 77 | 3 | 45 | 190 | 112 | 246 | 2.32e-17 | 80.1 |
| Msa1089420 | MtrunA17_Chr1g0151971 | 50.000 | 94 | 40 | 1 | 97 | 190 | 130 | 216 | 7.64e-17 | 78.6 |
| Msa1089420 | MtrunA17_Chr4g0054421 | 45.192 | 104 | 49 | 2 | 87 | 190 | 118 | 213 | 1.10e-16 | 77.8 |
| Msa1089420 | MtrunA17_Chr4g0071411 | 47.253 | 91 | 41 | 1 | 100 | 190 | 91 | 174 | 1.13e-16 | 77.0 |
| Msa1089420 | MtrunA17_Chr8g0335131 | 48.864 | 88 | 45 | 0 | 97 | 184 | 146 | 233 | 1.29e-16 | 78.2 |
| Msa1089420 | MtrunA17_Chr1g0175651 | 44.348 | 115 | 51 | 3 | 76 | 190 | 139 | 240 | 1.59e-16 | 77.8 |
| Msa1089420 | MtrunA17_Chr4g0044091 | 50.000 | 88 | 44 | 0 | 97 | 184 | 65 | 152 | 5.37e-16 | 74.7 |
| Msa1089420 | MtrunA17_Chr3g0135331 | 38.136 | 118 | 58 | 2 | 97 | 199 | 145 | 262 | 9.05e-14 | 70.1 |
| Msa1089420 | MtrunA17_Chr2g0299031 | 43.182 | 88 | 50 | 0 | 97 | 184 | 82 | 169 | 2.33e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089420 | AT5G15150.1 | 51.864 | 295 | 104 | 11 | 1 | 271 | 22 | 302 | 4.02e-82 | 249 |
| Msa1089420 | AT3G01220.1 | 47.552 | 286 | 109 | 8 | 1 | 271 | 16 | 275 | 9.80e-78 | 238 |
| Msa1089420 | AT1G69780.1 | 46.580 | 307 | 112 | 10 | 1 | 275 | 7 | 293 | 2.96e-68 | 214 |
| Msa1089420 | AT1G26960.1 | 50.235 | 213 | 86 | 5 | 74 | 275 | 51 | 254 | 1.74e-58 | 187 |
| Msa1089420 | AT5G65310.1 | 53.846 | 143 | 55 | 2 | 81 | 212 | 52 | 194 | 2.92e-39 | 139 |
| Msa1089420 | AT5G65310.2 | 53.846 | 143 | 55 | 2 | 81 | 212 | 34 | 176 | 3.03e-39 | 139 |
| Msa1089420 | AT2G22430.1 | 64.078 | 103 | 37 | 0 | 90 | 192 | 55 | 157 | 1.47e-38 | 137 |
| Msa1089420 | AT4G40060.1 | 63.636 | 99 | 36 | 0 | 94 | 192 | 56 | 154 | 7.13e-38 | 135 |
| Msa1089420 | AT3G01470.1 | 62.000 | 100 | 38 | 0 | 93 | 192 | 64 | 163 | 2.28e-37 | 133 |
| Msa1089420 | AT2G46680.1 | 55.319 | 94 | 42 | 0 | 98 | 191 | 33 | 126 | 4.62e-29 | 111 |
| Msa1089420 | AT1G27045.1 | 35.814 | 215 | 98 | 6 | 9 | 217 | 12 | 192 | 2.22e-27 | 106 |
| Msa1089420 | AT3G61890.1 | 55.556 | 90 | 40 | 0 | 100 | 189 | 33 | 122 | 3.46e-27 | 105 |
| Msa1089420 | AT2G46680.2 | 54.545 | 88 | 40 | 0 | 98 | 185 | 33 | 120 | 1.83e-26 | 104 |
| Msa1089420 | AT1G27045.5 | 46.400 | 125 | 63 | 1 | 97 | 217 | 25 | 149 | 3.48e-26 | 102 |
| Msa1089420 | AT1G27045.3 | 46.400 | 125 | 63 | 1 | 97 | 217 | 25 | 149 | 3.48e-26 | 102 |
| Msa1089420 | AT1G27045.2 | 46.400 | 125 | 63 | 1 | 97 | 217 | 17 | 141 | 3.77e-26 | 101 |
| Msa1089420 | AT1G27045.4 | 37.297 | 185 | 80 | 5 | 9 | 191 | 12 | 162 | 1.73e-25 | 102 |
| Msa1089420 | AT5G03790.1 | 46.847 | 111 | 56 | 2 | 97 | 205 | 77 | 186 | 6.68e-24 | 97.1 |
| Msa1089420 | AT2G36610.1 | 44.348 | 115 | 53 | 3 | 96 | 199 | 70 | 184 | 3.00e-22 | 91.7 |
| Msa1089420 | AT2G18550.1 | 49.107 | 112 | 47 | 2 | 97 | 201 | 61 | 169 | 4.06e-22 | 92.0 |
| Msa1089420 | AT5G03790.2 | 49.462 | 93 | 40 | 1 | 97 | 189 | 77 | 162 | 4.26e-22 | 91.3 |
| Msa1089420 | AT4G36740.2 | 52.222 | 90 | 43 | 0 | 97 | 186 | 56 | 145 | 8.17e-21 | 88.6 |
| Msa1089420 | AT4G36740.1 | 52.222 | 90 | 43 | 0 | 97 | 186 | 55 | 144 | 8.26e-21 | 88.6 |
| Msa1089420 | AT5G66700.1 | 47.573 | 103 | 52 | 1 | 86 | 186 | 58 | 160 | 5.88e-20 | 86.7 |
| Msa1089420 | AT5G53980.1 | 46.000 | 100 | 54 | 0 | 88 | 187 | 2 | 101 | 9.31e-20 | 84.0 |
| Msa1089420 | AT2G01430.1 | 45.045 | 111 | 53 | 2 | 80 | 190 | 123 | 225 | 1.26e-18 | 84.0 |
| Msa1089420 | AT4G37790.1 | 47.115 | 104 | 46 | 2 | 87 | 190 | 118 | 212 | 8.98e-18 | 81.6 |
| Msa1089420 | AT2G22800.1 | 47.115 | 104 | 46 | 2 | 87 | 190 | 105 | 199 | 4.50e-17 | 79.3 |
| Msa1089420 | AT5G47370.1 | 41.322 | 121 | 56 | 2 | 81 | 190 | 103 | 219 | 4.67e-17 | 79.7 |
| Msa1089420 | AT4G17460.1 | 46.667 | 105 | 51 | 2 | 87 | 190 | 124 | 224 | 6.86e-17 | 79.0 |
| Msa1089420 | AT3G60390.1 | 41.322 | 121 | 69 | 2 | 64 | 184 | 131 | 249 | 8.09e-17 | 79.3 |
| Msa1089420 | AT5G06710.1 | 46.789 | 109 | 51 | 2 | 87 | 195 | 183 | 284 | 1.90e-16 | 78.6 |
| Msa1089420 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 97 | 184 | 163 | 250 | 2.34e-15 | 75.1 |
| Msa1089420 | AT4G16780.1 | 43.878 | 98 | 53 | 1 | 87 | 184 | 121 | 216 | 5.86e-15 | 73.6 |
| Msa1089420 | AT1G70920.1 | 48.864 | 88 | 45 | 0 | 97 | 184 | 69 | 156 | 2.83e-14 | 70.5 |
| Msa1089420 | AT1G70920.2 | 48.864 | 88 | 45 | 0 | 97 | 184 | 39 | 126 | 3.87e-14 | 69.3 |
| Msa1089420 | AT2G01430.2 | 48.571 | 70 | 35 | 1 | 80 | 149 | 123 | 191 | 2.16e-12 | 65.5 |
Find 77 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTTGCTCTTCTATTT+TGG | 0.086155 | 7_3:-2934404 | None:intergenic |
| CAAAATTATAAGTTAAATTT+TGG | 0.108889 | 7_3:+2936777 | Msa1089420:three_prime_UTR |
| ATTTGGATTCCGAATAATTT+AGG | 0.166244 | 7_3:+2936568 | Msa1089420:three_prime_UTR |
| TAAAATATTAGATTTGAATT+TGG | 0.167679 | 7_3:-2936457 | None:intergenic |
| GTTTGAATACAAGAGGAATT+TGG | 0.219660 | 7_3:+2936551 | Msa1089420:three_prime_UTR |
| AAAAGGGATTGCTTTGAAAA+TGG | 0.232266 | 7_3:+2935995 | Msa1089420:CDS |
| TCGATGAGCAGCAGAGTTTA+TGG | 0.262053 | 7_3:+2936203 | Msa1089420:CDS |
| TCAGCATTTGTTTGGATAAT+CGG | 0.267516 | 7_3:+2936496 | Msa1089420:three_prime_UTR |
| GGTATAGCTATAAAGCTATA+AGG | 0.274605 | 7_3:-2933561 | None:intergenic |
| AATAAAATTCAGCATTTGTT+TGG | 0.279943 | 7_3:+2936488 | Msa1089420:three_prime_UTR |
| ATGCAATTGGCTAAAGCTTT+GGG | 0.280624 | 7_3:+2934351 | Msa1089420:CDS |
| ATCCTTTCTTCGAGTCTTAA+CGG | 0.311677 | 7_3:-2936255 | None:intergenic |
| CCACCTCATCAACACTTTCA+AGG | 0.311971 | 7_3:+2933765 | Msa1089420:CDS |
| CTTGTAGGCTTAAGTGAATT+TGG | 0.316425 | 7_3:-2936106 | None:intergenic |
| TTTGGATTCCGAATAATTTA+GGG | 0.325047 | 7_3:+2936569 | Msa1089420:three_prime_UTR |
| AGCAGCAGAGTTTATGGCCT+TGG | 0.338430 | 7_3:+2936209 | Msa1089420:CDS |
| GAAGCAATTTGATTCTCTTA+AGG | 0.348897 | 7_3:+2934464 | Msa1089420:CDS |
| CAATTTATGTTTGTGTAGAT+TGG | 0.354618 | 7_3:+2936659 | Msa1089420:three_prime_UTR |
| ACAGATAGAGAGAGAGAATA+AGG | 0.356776 | 7_3:-2933323 | None:intergenic |
| GTGAACATCAATGAATATTT+CGG | 0.362591 | 7_3:+2936350 | Msa1089420:three_prime_UTR |
| TCTTCGAGTCTTAACGGAAT+TGG | 0.375678 | 7_3:-2936249 | None:intergenic |
| AATGCAATTGGCTAAAGCTT+TGG | 0.380110 | 7_3:+2934350 | Msa1089420:CDS |
| CTGATCTTGAAGAGCATTGA+AGG | 0.381692 | 7_3:-2936141 | None:intergenic |
| AACCTAGACAAGTAGCTATA+TGG | 0.403297 | 7_3:+2934379 | Msa1089420:CDS |
| AGGAGCTGTGTCATGCTTGT+AGG | 0.404646 | 7_3:-2936121 | None:intergenic |
| GTGAATTTGGTGTTCTAGAA+AGG | 0.404843 | 7_3:-2936093 | None:intergenic |
| GATGGTCATTCGTTCAAGAT+TGG | 0.422092 | 7_3:+2936429 | Msa1089420:three_prime_UTR |
| AGCTACAAACTCTAAAGAAA+AGG | 0.434526 | 7_3:+2935978 | Msa1089420:intron |
| TGAAGAAGGGTACTCACAAA+TGG | 0.439119 | 7_3:+2934239 | Msa1089420:CDS |
| TTCTTCTTCAACTTCTACCA+TGG | 0.441834 | 7_3:+2933638 | Msa1089420:exon |
| GTATAGCTATAAAGCTATAA+GGG | 0.453583 | 7_3:-2933560 | None:intergenic |
| TTCCGTTAAGACTCGAAGAA+AGG | 0.456253 | 7_3:+2936253 | Msa1089420:exon |
| TCGCATTCACTCACTCAATC+AGG | 0.467669 | 7_3:+2936401 | Msa1089420:three_prime_UTR |
| GGCTGATAATGACACACTTA+AGG | 0.472252 | 7_3:+2934485 | Msa1089420:CDS |
| TGTTGATGAGGTGGAAAGGA+AGG | 0.483232 | 7_3:-2933756 | None:intergenic |
| TTCAAATGTTTGAATACAAG+AGG | 0.487294 | 7_3:+2936544 | Msa1089420:three_prime_UTR |
| GCTACAAACTCTAAAGAAAA+GGG | 0.494292 | 7_3:+2935979 | Msa1089420:intron |
| GATCAATTATCAGATGAAGA+AGG | 0.500107 | 7_3:+2934225 | Msa1089420:CDS |
| ATGAGGTGGAAAGGAAGGAT+AGG | 0.501061 | 7_3:-2933751 | None:intergenic |
| TGCGAGCTATTTCTGACTGC+AGG | 0.513537 | 7_3:-2936383 | None:intergenic |
| CTCTATGCCTGAAAATGACA+TGG | 0.537665 | 7_3:-2934151 | None:intergenic |
| AACATTTGAAATATCGATGG+TGG | 0.540011 | 7_3:-2936531 | None:intergenic |
| GCTGGTACTGATATGATGAT+AGG | 0.541839 | 7_3:-2933380 | None:intergenic |
| GAAGAAGGGTACTCACAAAT+GGG | 0.542302 | 7_3:+2934240 | Msa1089420:CDS |
| GTGACAGAGTATTCAGAAAG+AGG | 0.542714 | 7_3:-2933407 | None:intergenic |
| AATGAAGGTTCTCGGAGCAA+TGG | 0.544253 | 7_3:+2936040 | Msa1089420:CDS |
| TAGTATATAGTATAATATAG+AGG | 0.546588 | 7_3:-2933498 | None:intergenic |
| TATTCAGAAAGAGGGATGGC+TGG | 0.547505 | 7_3:-2933398 | None:intergenic |
| ATCAATTATCAGATGAAGAA+GGG | 0.550627 | 7_3:+2934226 | Msa1089420:CDS |
| GAGTTTGGCTCTCACTCTCA+TGG | 0.565301 | 7_3:-2933429 | None:intergenic |
| GTCATTCGTTCAAGATTGGA+CGG | 0.566902 | 7_3:+2936433 | Msa1089420:three_prime_UTR |
| TGCAATTGGCTAAAGCTTTG+GGG | 0.570828 | 7_3:+2934352 | Msa1089420:CDS |
| TCAAACATTTGAAATATCGA+TGG | 0.574074 | 7_3:-2936534 | None:intergenic |
| AACCATATAGCTACTTGTCT+AGG | 0.577432 | 7_3:-2934381 | None:intergenic |
| AAGATGAAAGTATGAGAAGG+TGG | 0.578267 | 7_3:-2933666 | None:intergenic |
| TATTAGAATTATTCATGCAA+AGG | 0.590726 | 7_3:-2933582 | None:intergenic |
| TAGAGAGAGAGAATAAGGAG+AGG | 0.593214 | 7_3:-2933318 | None:intergenic |
| ATTGTAGGTAGTGGAAGTAA+TGG | 0.594104 | 7_3:+2934102 | Msa1089420:intron |
| AAATGGGTGAAAAGAAGAAG+AGG | 0.594234 | 7_3:+2934256 | Msa1089420:CDS |
| ATTTCTGACTGCAGGAGAGT+CGG | 0.595893 | 7_3:-2936375 | None:intergenic |
| TGAAAGATGAAAGTATGAGA+AGG | 0.596872 | 7_3:-2933669 | None:intergenic |
| GGAAGGATAGGAGTTAAGAG+AGG | 0.600687 | 7_3:-2933739 | None:intergenic |
| CCTTGAAAGTGTTGATGAGG+TGG | 0.603326 | 7_3:-2933765 | None:intergenic |
| AAACAACAAATTACATGCAG+AGG | 0.604512 | 7_3:+2934512 | Msa1089420:CDS |
| AATCTATTTGAGTCATGAAG+AGG | 0.607100 | 7_3:+2936699 | Msa1089420:three_prime_UTR |
| GTAGGTAGTGGAAGTAATGG+TGG | 0.615975 | 7_3:+2934105 | Msa1089420:intron |
| TGACAGAGTATTCAGAAAGA+GGG | 0.620131 | 7_3:-2933406 | None:intergenic |
| ATGAGAAGGTGGAAAAGCCA+TGG | 0.623402 | 7_3:-2933655 | None:intergenic |
| CTATTTGAGTCATGAAGAGG+TGG | 0.625626 | 7_3:+2936702 | Msa1089420:three_prime_UTR |
| TGACCTTGAAAGTGTTGATG+AGG | 0.642298 | 7_3:-2933768 | None:intergenic |
| TCACTCAATCAGGATATCGA+TGG | 0.645152 | 7_3:+2936411 | Msa1089420:three_prime_UTR |
| GGTTCCAAAATAGAAGAGCA+AGG | 0.645595 | 7_3:+2934400 | Msa1089420:CDS |
| AAAGTGTTGATGAGGTGGAA+AGG | 0.650161 | 7_3:-2933760 | None:intergenic |
| AGAGTATTCAGAAAGAGGGA+TGG | 0.662604 | 7_3:-2933402 | None:intergenic |
| AAGTGTGATGAATTAGTGCA+TGG | 0.667963 | 7_3:+2934195 | Msa1089420:CDS |
| TGTTGCTGATGATCAGTCCA+AGG | 0.684041 | 7_3:-2936226 | None:intergenic |
| TCCAAAATAGAAGAGCAAGG+TGG | 0.719995 | 7_3:+2934403 | Msa1089420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAATAAATTGTATTTTT+TGG | + | chr7_3:2934911-2934930 | Msa1089420:intron | 10.0% |
| !! | ATCAAAATAAAATAAAAGTT+TGG | - | chr7_3:2935181-2935200 | None:intergenic | 10.0% |
| !! | TAAAATATTAGATTTGAATT+TGG | - | chr7_3:2936460-2936479 | None:intergenic | 10.0% |
| !! | AAAAATAAAATAAAGTGTAA+GGG | - | chr7_3:2936756-2936775 | None:intergenic | 10.0% |
| !! | TAGTATATAGTATAATATAG+AGG | - | chr7_3:2933501-2933520 | None:intergenic | 15.0% |
| !! | TGATAATATAACAAATATTG+AGG | - | chr7_3:2933924-2933943 | None:intergenic | 15.0% |
| !!! | TGAAAAACTAATCTTAATTT+TGG | - | chr7_3:2934016-2934035 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTTTGTTATTGT+AGG | + | chr7_3:2934087-2934106 | Msa1089420:intron | 15.0% |
| !!! | ATTAGTCATTTTCAATAAAA+TGG | + | chr7_3:2934771-2934790 | Msa1089420:intron | 15.0% |
| !! | AAGAATAAAAAATTGGATAT+TGG | - | chr7_3:2934885-2934904 | None:intergenic | 15.0% |
| !!! | ATTGTATTTTTTGGAAATAA+AGG | + | chr7_3:2934920-2934939 | Msa1089420:intron | 15.0% |
| !! | TAATTTGAATTAGTTATAAG+AGG | + | chr7_3:2935240-2935259 | Msa1089420:intron | 15.0% |
| !!! | ATTTTTTAACCAAGTTAAAA+AGG | + | chr7_3:2936310-2936329 | Msa1089420:three_prime_UTR | 15.0% |
| !! | CAAAAATAAAATAAAGTGTA+AGG | - | chr7_3:2936757-2936776 | None:intergenic | 15.0% |
| !! | TATTAGAATTATTCATGCAA+AGG | - | chr7_3:2933585-2933604 | None:intergenic | 20.0% |
| !!! | AATCAAGAAAGAAATTTTAG+AGG | - | chr7_3:2934668-2934687 | None:intergenic | 20.0% |
| !! | AAAGAAGACTTTGATTAATT+TGG | + | chr7_3:2934719-2934738 | Msa1089420:intron | 20.0% |
| !! | CATCTTCAAGAATAAAAAAT+TGG | - | chr7_3:2934892-2934911 | None:intergenic | 20.0% |
| !! | GTTAATTACACATTCATTAT+TGG | - | chr7_3:2935126-2935145 | None:intergenic | 20.0% |
| !!! | TGATTTAAAGATTTTTGCAA+CGG | + | chr7_3:2935807-2935826 | Msa1089420:intron | 20.0% |
| !!! | GGTATTTTCCTATAATATAA+AGG | + | chr7_3:2935851-2935870 | Msa1089420:intron | 20.0% |
| !!! | AACCTTCATTTTCTTTTTTT+AGG | - | chr7_3:2936030-2936049 | None:intergenic | 20.0% |
| !! | AATAAAATTCAGCATTTGTT+TGG | + | chr7_3:2936488-2936507 | Msa1089420:three_prime_UTR | 20.0% |
| !! | AAAGAAAAAAGAAACTGATA+GGG | - | chr7_3:2936639-2936658 | None:intergenic | 20.0% |
| !! | GAATGATTTAAGAGAGTTTT+TGG | - | chr7_3:2933462-2933481 | None:intergenic | 25.0% |
| ! | GTATAGCTATAAAGCTATAA+GGG | - | chr7_3:2933563-2933582 | None:intergenic | 25.0% |
| ! | AGAAGAAAAAGAAAAGGATA+TGG | - | chr7_3:2933625-2933644 | None:intergenic | 25.0% |
| ! | AGTTGAAGAAGAAAAAGAAA+AGG | - | chr7_3:2933631-2933650 | None:intergenic | 25.0% |
| !! | TAACACACAAGAAAAAGTTT+TGG | - | chr7_3:2933796-2933815 | None:intergenic | 25.0% |
| !! | AAATATTGAGGTTTTCACAA+CGG | - | chr7_3:2933912-2933931 | None:intergenic | 25.0% |
| ! | ATCAATTATCAGATGAAGAA+GGG | + | chr7_3:2934226-2934245 | Msa1089420:CDS | 25.0% |
| !! | ACTTTGATTAATTTGGATCT+TGG | + | chr7_3:2934726-2934745 | Msa1089420:intron | 25.0% |
| !! | TTGGTGGTAAATTAATTAAC+TGG | + | chr7_3:2934745-2934764 | Msa1089420:intron | 25.0% |
| ! | TGGTGGTAAATTAATTAACT+GGG | + | chr7_3:2934746-2934765 | Msa1089420:intron | 25.0% |
| ! | GGAAAATATGAAAAACTATG+AGG | - | chr7_3:2934985-2935004 | None:intergenic | 25.0% |
| ! | AAATCAAAGTCTATATCAAG+GGG | - | chr7_3:2935007-2935026 | None:intergenic | 25.0% |
| ! | CAAATCAAAGTCTATATCAA+GGG | - | chr7_3:2935008-2935027 | None:intergenic | 25.0% |
| ! | TCAAATCAAAGTCTATATCA+AGG | - | chr7_3:2935009-2935028 | None:intergenic | 25.0% |
| ! | TAAATGATTAAAACCTTCAG+TGG | - | chr7_3:2935078-2935097 | None:intergenic | 25.0% |
| ! | ATTGAGCTTTCTTAGTAAAT+AGG | - | chr7_3:2935285-2935304 | None:intergenic | 25.0% |
| ! | ATTGTTAGTTGATCATTCAT+AGG | + | chr7_3:2935387-2935406 | Msa1089420:intron | 25.0% |
| !! | CATACCATGATTTTAAATTG+CGG | + | chr7_3:2935590-2935609 | Msa1089420:intron | 25.0% |
| !!! | AGTTCTAAGCATTTATATTG+CGG | + | chr7_3:2935623-2935642 | Msa1089420:intron | 25.0% |
| !! | GAGACCTCTAAAAAAAATTA+TGG | + | chr7_3:2935695-2935714 | Msa1089420:intron | 25.0% |
| ! | AGCCTAAAAAAAGAAAATGA+AGG | + | chr7_3:2936025-2936044 | Msa1089420:CDS | 25.0% |
| ! | AAAAAGAAAATGAAGGTTCT+CGG | + | chr7_3:2936032-2936051 | Msa1089420:CDS | 25.0% |
| !!! | GTAATTCATCCTTTTTAACT+TGG | - | chr7_3:2936322-2936341 | None:intergenic | 25.0% |
| ! | GTGAACATCAATGAATATTT+CGG | + | chr7_3:2936350-2936369 | Msa1089420:three_prime_UTR | 25.0% |
| !! | TCAAACATTTGAAATATCGA+TGG | - | chr7_3:2936537-2936556 | None:intergenic | 25.0% |
| ! | TTCAAATGTTTGAATACAAG+AGG | + | chr7_3:2936544-2936563 | Msa1089420:three_prime_UTR | 25.0% |
| ! | ATTTGGATTCCGAATAATTT+AGG | + | chr7_3:2936568-2936587 | Msa1089420:three_prime_UTR | 25.0% |
| ! | TTTGGATTCCGAATAATTTA+GGG | + | chr7_3:2936569-2936588 | Msa1089420:three_prime_UTR | 25.0% |
| !!! | CATTTTAGCCCTAAATTATT+CGG | - | chr7_3:2936580-2936599 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAAGAAACTGAT+AGG | - | chr7_3:2936640-2936659 | None:intergenic | 25.0% |
| ! | CAATTTATGTTTGTGTAGAT+TGG | + | chr7_3:2936659-2936678 | Msa1089420:three_prime_UTR | 25.0% |
| GGTATAGCTATAAAGCTATA+AGG | - | chr7_3:2933564-2933583 | None:intergenic | 30.0% | |
| ! | TGAAAGATGAAAGTATGAGA+AGG | - | chr7_3:2933672-2933691 | None:intergenic | 30.0% |
| AAAAGTTTGCAACGTAACTT+CGG | - | chr7_3:2933841-2933860 | None:intergenic | 30.0% | |
| !! | TTGTTTGTTATTGTAGGTAG+TGG | + | chr7_3:2934093-2934112 | Msa1089420:intron | 30.0% |
| GATCAATTATCAGATGAAGA+AGG | + | chr7_3:2934225-2934244 | Msa1089420:CDS | 30.0% | |
| GAAGCAATTTGATTCTCTTA+AGG | + | chr7_3:2934464-2934483 | Msa1089420:CDS | 30.0% | |
| AAACAACAAATTACATGCAG+AGG | + | chr7_3:2934512-2934531 | Msa1089420:CDS | 30.0% | |
| ! | TTGATTAATTTGGATCTTGG+TGG | + | chr7_3:2934729-2934748 | Msa1089420:intron | 30.0% |
| ! | AGAAGACTTTTCTTTCACTT+TGG | + | chr7_3:2934944-2934963 | Msa1089420:intron | 30.0% |
| AATCAAAGTCTATATCAAGG+GGG | - | chr7_3:2935006-2935025 | None:intergenic | 30.0% | |
| ATTTGATGTGTGTTTGTGAA+TGG | + | chr7_3:2935023-2935042 | Msa1089420:intron | 30.0% | |
| AAAAGTCATAAAGACCATGT+GGG | - | chr7_3:2935328-2935347 | None:intergenic | 30.0% | |
| AAAAAGTCATAAAGACCATG+TGG | - | chr7_3:2935329-2935348 | None:intergenic | 30.0% | |
| GAATGATCAACTAACAATCA+AGG | - | chr7_3:2935385-2935404 | None:intergenic | 30.0% | |
| CACTATTAAATTTGCAGTTC+TGG | - | chr7_3:2935433-2935452 | None:intergenic | 30.0% | |
| ATGTTGCTATGAAAAAGACA+AGG | + | chr7_3:2935497-2935516 | Msa1089420:intron | 30.0% | |
| TTTATATTGCGGTAAAATGC+TGG | + | chr7_3:2935634-2935653 | Msa1089420:intron | 30.0% | |
| !!! | GGTGCCATAATTTTTTTTAG+AGG | - | chr7_3:2935702-2935721 | None:intergenic | 30.0% |
| GTTGCAAGCCTTTATATTAT+AGG | - | chr7_3:2935862-2935881 | None:intergenic | 30.0% | |
| ! | AGCTACAAACTCTAAAGAAA+AGG | + | chr7_3:2935978-2935997 | Msa1089420:intron | 30.0% |
| ! | GCTACAAACTCTAAAGAAAA+GGG | + | chr7_3:2935979-2935998 | Msa1089420:intron | 30.0% |
| !! | AAAAGGGATTGCTTTGAAAA+TGG | + | chr7_3:2935995-2936014 | Msa1089420:CDS | 30.0% |
| TCAGCATTTGTTTGGATAAT+CGG | + | chr7_3:2936496-2936515 | Msa1089420:three_prime_UTR | 30.0% | |
| ! | AACATTTGAAATATCGATGG+TGG | - | chr7_3:2936534-2936553 | None:intergenic | 30.0% |
| GTTTGAATACAAGAGGAATT+TGG | + | chr7_3:2936551-2936570 | Msa1089420:three_prime_UTR | 30.0% | |
| AAGAAACTGATAGGGAAAAA+AGG | - | chr7_3:2936631-2936650 | None:intergenic | 30.0% | |
| AATCTATTTGAGTCATGAAG+AGG | + | chr7_3:2936699-2936718 | Msa1089420:three_prime_UTR | 30.0% | |
| ACAGATAGAGAGAGAGAATA+AGG | - | chr7_3:2933326-2933345 | None:intergenic | 35.0% | |
| ! | TGACAGAGTATTCAGAAAGA+GGG | - | chr7_3:2933409-2933428 | None:intergenic | 35.0% |
| !! | GTTTTTGGATCAGAAGAGTT+TGG | - | chr7_3:2933447-2933466 | None:intergenic | 35.0% |
| TTCTTCTTCAACTTCTACCA+TGG | + | chr7_3:2933638-2933657 | Msa1089420:exon | 35.0% | |
| ! | AAGATGAAAGTATGAGAAGG+TGG | - | chr7_3:2933669-2933688 | None:intergenic | 35.0% |
| ! | AATCGCAATTTTGAGCACAT+CGG | - | chr7_3:2933883-2933902 | None:intergenic | 35.0% |
| !! | ATTGTAGGTAGTGGAAGTAA+TGG | + | chr7_3:2934102-2934121 | Msa1089420:intron | 35.0% |
| !!! | AAGAGATCCATGTCATTTTC+AGG | + | chr7_3:2934144-2934163 | Msa1089420:CDS | 35.0% |
| AAGTGTGATGAATTAGTGCA+TGG | + | chr7_3:2934195-2934214 | Msa1089420:CDS | 35.0% | |
| AAATGGGTGAAAAGAAGAAG+AGG | + | chr7_3:2934256-2934275 | Msa1089420:CDS | 35.0% | |
| !!! | CTTGAGAAGAGTTTTGAGAT+TGG | + | chr7_3:2934303-2934322 | Msa1089420:CDS | 35.0% |
| ACCTGAGAGAAAAATGCAAT+TGG | + | chr7_3:2934338-2934357 | Msa1089420:CDS | 35.0% | |
| AATGCAATTGGCTAAAGCTT+TGG | + | chr7_3:2934350-2934369 | Msa1089420:CDS | 35.0% | |
| ATGCAATTGGCTAAAGCTTT+GGG | + | chr7_3:2934351-2934370 | Msa1089420:CDS | 35.0% | |
| AACCTAGACAAGTAGCTATA+TGG | + | chr7_3:2934379-2934398 | Msa1089420:CDS | 35.0% | |
| AACCATATAGCTACTTGTCT+AGG | - | chr7_3:2934384-2934403 | None:intergenic | 35.0% | |
| CACATTCATTATTGGAGACA+AGG | - | chr7_3:2935118-2935137 | None:intergenic | 35.0% | |
| GATTTAGTTATGATCCCACA+TGG | + | chr7_3:2935311-2935330 | Msa1089420:intron | 35.0% | |
| TTAGTACATAGTTGTCCACA+TGG | + | chr7_3:2935535-2935554 | Msa1089420:intron | 35.0% | |
| ! | GCAACCGCAATTTAAAATCA+TGG | - | chr7_3:2935597-2935616 | None:intergenic | 35.0% |
| TCAAATCGAGGTCAAAATTG+TGG | - | chr7_3:2935889-2935908 | None:intergenic | 35.0% | |
| ATGCATATGCTTTCAAATCG+AGG | - | chr7_3:2935901-2935920 | None:intergenic | 35.0% | |
| !! | GTGAATTTGGTGTTCTAGAA+AGG | - | chr7_3:2936096-2936115 | None:intergenic | 35.0% |
| CTTGTAGGCTTAAGTGAATT+TGG | - | chr7_3:2936109-2936128 | None:intergenic | 35.0% | |
| ATCCTTTCTTCGAGTCTTAA+CGG | - | chr7_3:2936258-2936277 | None:intergenic | 35.0% | |
| ! | AGGTACAGACAGCGATTTTT+AGG | - | chr7_3:2933363-2933382 | None:intergenic | 40.0% |
| !! | GCTGGTACTGATATGATGAT+AGG | - | chr7_3:2933383-2933402 | None:intergenic | 40.0% |
| ! | AGAGTATTCAGAAAGAGGGA+TGG | - | chr7_3:2933405-2933424 | None:intergenic | 40.0% |
| ! | GTGACAGAGTATTCAGAAAG+AGG | - | chr7_3:2933410-2933429 | None:intergenic | 40.0% |
| !! | AAAGTGTTGATGAGGTGGAA+AGG | - | chr7_3:2933763-2933782 | None:intergenic | 40.0% |
| !! | TGACCTTGAAAGTGTTGATG+AGG | - | chr7_3:2933771-2933790 | None:intergenic | 40.0% |
| CTCTATGCCTGAAAATGACA+TGG | - | chr7_3:2934154-2934173 | None:intergenic | 40.0% | |
| !! | TGAAGAAGGGTACTCACAAA+TGG | + | chr7_3:2934239-2934258 | Msa1089420:CDS | 40.0% |
| !! | GAAGAAGGGTACTCACAAAT+GGG | + | chr7_3:2934240-2934259 | Msa1089420:CDS | 40.0% |
| ! | GCCAATTGCATTTTTCTCTC+AGG | - | chr7_3:2934342-2934361 | None:intergenic | 40.0% |
| TGCAATTGGCTAAAGCTTTG+GGG | + | chr7_3:2934352-2934371 | Msa1089420:CDS | 40.0% | |
| GGTTCCAAAATAGAAGAGCA+AGG | + | chr7_3:2934400-2934419 | Msa1089420:CDS | 40.0% | |
| TCCAAAATAGAAGAGCAAGG+TGG | + | chr7_3:2934403-2934422 | Msa1089420:CDS | 40.0% | |
| ! | TCCACCTTGCTCTTCTATTT+TGG | - | chr7_3:2934407-2934426 | None:intergenic | 40.0% |
| ! | GGCTGATAATGACACACTTA+AGG | + | chr7_3:2934485-2934504 | Msa1089420:CDS | 40.0% |
| TGATTAAAACCTTCAGTGGC+AGG | - | chr7_3:2935074-2935093 | None:intergenic | 40.0% | |
| CACTTTCATATGCTTCCATG+TGG | - | chr7_3:2935553-2935572 | None:intergenic | 40.0% | |
| ! | CACATGGAAGCATATGAAAG+TGG | + | chr7_3:2935551-2935570 | Msa1089420:intron | 40.0% |
| CTCTCGTAACATTGCAATTG+CGG | - | chr7_3:2935678-2935697 | None:intergenic | 40.0% | |
| !! | CTGATCTTGAAGAGCATTGA+AGG | - | chr7_3:2936144-2936163 | None:intergenic | 40.0% |
| TCTTCGAGTCTTAACGGAAT+TGG | - | chr7_3:2936252-2936271 | None:intergenic | 40.0% | |
| TTCCGTTAAGACTCGAAGAA+AGG | + | chr7_3:2936253-2936272 | Msa1089420:exon | 40.0% | |
| TCACTCAATCAGGATATCGA+TGG | + | chr7_3:2936411-2936430 | Msa1089420:three_prime_UTR | 40.0% | |
| GATGGTCATTCGTTCAAGAT+TGG | + | chr7_3:2936429-2936448 | Msa1089420:three_prime_UTR | 40.0% | |
| GTCATTCGTTCAAGATTGGA+CGG | + | chr7_3:2936433-2936452 | Msa1089420:three_prime_UTR | 40.0% | |
| CTATTTGAGTCATGAAGAGG+TGG | + | chr7_3:2936702-2936721 | Msa1089420:three_prime_UTR | 40.0% | |
| TATTCAGAAAGAGGGATGGC+TGG | - | chr7_3:2933401-2933420 | None:intergenic | 45.0% | |
| ATGAGAAGGTGGAAAAGCCA+TGG | - | chr7_3:2933658-2933677 | None:intergenic | 45.0% | |
| GGAAGGATAGGAGTTAAGAG+AGG | - | chr7_3:2933742-2933761 | None:intergenic | 45.0% | |
| ATGAGGTGGAAAGGAAGGAT+AGG | - | chr7_3:2933754-2933773 | None:intergenic | 45.0% | |
| ! | TGTTGATGAGGTGGAAAGGA+AGG | - | chr7_3:2933759-2933778 | None:intergenic | 45.0% |
| !! | CCTTGAAAGTGTTGATGAGG+TGG | - | chr7_3:2933768-2933787 | None:intergenic | 45.0% |
| CCACCTCATCAACACTTTCA+AGG | + | chr7_3:2933765-2933784 | Msa1089420:CDS | 45.0% | |
| !! | GTAGGTAGTGGAAGTAATGG+TGG | + | chr7_3:2934105-2934124 | Msa1089420:intron | 45.0% |
| ! | ACAAGTTTTCCTGCCACTGA+AGG | + | chr7_3:2935062-2935081 | Msa1089420:intron | 45.0% |
| !! | AGTTCTGGATTCTGACACAC+TGG | - | chr7_3:2935418-2935437 | None:intergenic | 45.0% |
| AATTATGGCACCCGCAACTA+CGG | + | chr7_3:2935710-2935729 | Msa1089420:intron | 45.0% | |
| TTGTCCATAACCGTAGTTGC+GGG | - | chr7_3:2935723-2935742 | None:intergenic | 45.0% | |
| GTTGTCCATAACCGTAGTTG+CGG | - | chr7_3:2935724-2935743 | None:intergenic | 45.0% | |
| TATCCCAACTGCAATTGCGA+CGG | + | chr7_3:2935830-2935849 | Msa1089420:intron | 45.0% | |
| ATACCGTCGCAATTGCAGTT+GGG | - | chr7_3:2935836-2935855 | None:intergenic | 45.0% | |
| AATACCGTCGCAATTGCAGT+TGG | - | chr7_3:2935837-2935856 | None:intergenic | 45.0% | |
| AATGAAGGTTCTCGGAGCAA+TGG | + | chr7_3:2936040-2936059 | Msa1089420:CDS | 45.0% | |
| TCGATGAGCAGCAGAGTTTA+TGG | + | chr7_3:2936203-2936222 | Msa1089420:CDS | 45.0% | |
| TGTTGCTGATGATCAGTCCA+AGG | - | chr7_3:2936229-2936248 | None:intergenic | 45.0% | |
| ATTTCTGACTGCAGGAGAGT+CGG | - | chr7_3:2936378-2936397 | None:intergenic | 45.0% | |
| TCGCATTCACTCACTCAATC+AGG | + | chr7_3:2936401-2936420 | Msa1089420:three_prime_UTR | 45.0% | |
| !!! | TAAAAAATTTCATTTTAAAT+CGG | - | chr7_3:2936298-2936317 | None:intergenic | 5.0% |
| !! | GAGTTTGGCTCTCACTCTCA+TGG | - | chr7_3:2933432-2933451 | None:intergenic | 50.0% |
| GAGAGACGATGTCGTTGTCA+TGG | - | chr7_3:2933967-2933986 | None:intergenic | 50.0% | |
| AGGAGCTGTGTCATGCTTGT+AGG | - | chr7_3:2936124-2936143 | None:intergenic | 50.0% | |
| AGCAGCAGAGTTTATGGCCT+TGG | + | chr7_3:2936209-2936228 | Msa1089420:CDS | 50.0% | |
| !! | TGCGAGCTATTTCTGACTGC+AGG | - | chr7_3:2936386-2936405 | None:intergenic | 50.0% |
| GGCACCCGCAACTACGGTTA+TGG | + | chr7_3:2935716-2935735 | Msa1089420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2933321 | 2936798 | 2933321 | ID=Msa1089420;Name=Msa1089420 |
| chr7_3 | mRNA | 2933321 | 2936798 | 2933321 | ID=Msa1089420-mRNA-1;Parent=Msa1089420;Name=Msa1089420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=336|1|1|1|1|1|3|537|278 |
| chr7_3 | exon | 2933321 | 2933786 | 2933321 | ID=Msa1089420-mRNA-1:exon:1174;Parent=Msa1089420-mRNA-1 |
| chr7_3 | exon | 2934109 | 2934533 | 2934109 | ID=Msa1089420-mRNA-1:exon:1175;Parent=Msa1089420-mRNA-1 |
| chr7_3 | exon | 2935980 | 2936798 | 2935980 | ID=Msa1089420-mRNA-1:exon:1176;Parent=Msa1089420-mRNA-1 |
| chr7_3 | five_prime_UTR | 2933321 | 2933656 | 2933321 | ID=Msa1089420-mRNA-1:five_prime_utr;Parent=Msa1089420-mRNA-1 |
| chr7_3 | CDS | 2933657 | 2933786 | 2933657 | ID=Msa1089420-mRNA-1:cds;Parent=Msa1089420-mRNA-1 |
| chr7_3 | CDS | 2934109 | 2934533 | 2934109 | ID=Msa1089420-mRNA-1:cds;Parent=Msa1089420-mRNA-1 |
| chr7_3 | CDS | 2935980 | 2936261 | 2935980 | ID=Msa1089420-mRNA-1:cds;Parent=Msa1089420-mRNA-1 |
| chr7_3 | three_prime_UTR | 2936262 | 2936798 | 2936262 | ID=Msa1089420-mRNA-1:three_prime_utr;Parent=Msa1089420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
