Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090270 | XP_039687124.1 | 79.740 | 385 | 46 | 6 | 40 | 411 | 4 | 369 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090270 | sp|Q6NQK2|NAC8_ARATH | 46.341 | 451 | 180 | 14 | 11 | 411 | 5 | 443 | 1.48e-116 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090270 | A0A896WDF1 | 73.086 | 405 | 91 | 7 | 10 | 411 | 1 | 390 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1090270 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090270 | MtrunA17_Chr1g0198751 | 61.996 | 471 | 108 | 5 | 10 | 411 | 6 | 474 | 0.0 | 568 |
| Msa1090270 | MtrunA17_Chr1g0198741 | 82.215 | 298 | 33 | 4 | 118 | 411 | 8 | 289 | 1.41e-175 | 491 |
| Msa1090270 | MtrunA17_Chr5g0422431 | 57.306 | 438 | 141 | 8 | 10 | 407 | 4 | 435 | 1.28e-162 | 464 |
| Msa1090270 | MtrunA17_Chr7g0227071 | 53.271 | 214 | 98 | 1 | 12 | 223 | 5 | 218 | 1.43e-77 | 248 |
| Msa1090270 | MtrunA17_Chr2g0282871 | 54.762 | 210 | 92 | 2 | 36 | 242 | 25 | 234 | 4.21e-71 | 226 |
| Msa1090270 | MtrunA17_Chr4g0046431 | 45.878 | 279 | 131 | 8 | 20 | 281 | 19 | 294 | 2.77e-69 | 221 |
| Msa1090270 | MtrunA17_Chr8g0389661 | 50.667 | 225 | 101 | 4 | 40 | 256 | 27 | 249 | 6.45e-68 | 223 |
| Msa1090270 | MtrunA17_Chr4g0040541 | 55.080 | 187 | 79 | 2 | 41 | 222 | 24 | 210 | 4.31e-65 | 209 |
| Msa1090270 | MtrunA17_Chr8g0367761 | 52.195 | 205 | 90 | 4 | 20 | 216 | 19 | 223 | 1.55e-64 | 207 |
| Msa1090270 | MtrunA17_Chr2g0324961 | 55.914 | 186 | 78 | 2 | 41 | 222 | 25 | 210 | 3.08e-60 | 197 |
| Msa1090270 | MtrunA17_Chr6g0484441 | 33.520 | 179 | 88 | 10 | 62 | 232 | 5 | 160 | 1.95e-15 | 77.0 |
| Msa1090270 | MtrunA17_Chr2g0318101 | 35.333 | 150 | 71 | 9 | 60 | 202 | 13 | 143 | 1.21e-12 | 68.6 |
| Msa1090270 | MtrunA17_Chr1g0147421 | 31.765 | 170 | 93 | 9 | 62 | 224 | 27 | 180 | 1.65e-11 | 65.5 |
| Msa1090270 | MtrunA17_Chr8g0359921 | 34.752 | 141 | 76 | 6 | 62 | 201 | 14 | 139 | 2.03e-11 | 64.7 |
| Msa1090270 | MtrunA17_Chr3g0124761 | 35.417 | 144 | 72 | 8 | 62 | 202 | 7 | 132 | 6.03e-11 | 63.2 |
| Msa1090270 | MtrunA17_Chr4g0018391 | 24.906 | 265 | 164 | 11 | 62 | 318 | 7 | 244 | 6.20e-11 | 63.5 |
| Msa1090270 | MtrunA17_Chr3g0139331 | 30.675 | 163 | 91 | 9 | 62 | 218 | 11 | 157 | 7.50e-11 | 63.2 |
| Msa1090270 | MtrunA17_Chr7g0217711 | 32.468 | 154 | 86 | 7 | 50 | 201 | 7 | 144 | 9.45e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090270 | AT1G25580.1 | 46.341 | 451 | 180 | 14 | 11 | 411 | 5 | 443 | 1.51e-117 | 350 |
| Msa1090270 | AT3G01600.1 | 51.339 | 224 | 104 | 3 | 11 | 232 | 4 | 224 | 3.06e-72 | 231 |
| Msa1090270 | AT5G14490.2 | 52.113 | 213 | 99 | 2 | 11 | 221 | 4 | 215 | 1.95e-70 | 223 |
| Msa1090270 | AT5G14490.4 | 52.113 | 213 | 99 | 2 | 11 | 221 | 4 | 215 | 3.28e-70 | 225 |
| Msa1090270 | AT5G14490.1 | 52.113 | 213 | 99 | 2 | 11 | 221 | 7 | 218 | 3.98e-70 | 225 |
| Msa1090270 | AT5G14490.3 | 52.113 | 213 | 99 | 2 | 11 | 221 | 7 | 218 | 8.03e-70 | 224 |
| Msa1090270 | AT4G29230.3 | 56.250 | 192 | 73 | 3 | 40 | 222 | 28 | 217 | 1.47e-69 | 226 |
| Msa1090270 | AT4G29230.1 | 56.250 | 192 | 73 | 3 | 40 | 222 | 28 | 217 | 5.92e-69 | 226 |
| Msa1090270 | AT4G29230.2 | 55.729 | 192 | 73 | 3 | 40 | 222 | 28 | 216 | 4.71e-68 | 224 |
| Msa1090270 | AT1G28470.1 | 50.679 | 221 | 98 | 3 | 13 | 227 | 28 | 243 | 5.92e-67 | 216 |
| Msa1090270 | AT5G56620.3 | 52.308 | 195 | 80 | 3 | 40 | 222 | 22 | 215 | 2.30e-64 | 212 |
| Msa1090270 | AT5G56620.2 | 52.308 | 195 | 80 | 3 | 40 | 222 | 22 | 215 | 2.55e-64 | 211 |
| Msa1090270 | AT5G56620.1 | 52.308 | 195 | 80 | 3 | 40 | 222 | 22 | 215 | 4.46e-64 | 210 |
| Msa1090270 | AT4G28500.1 | 49.776 | 223 | 98 | 5 | 11 | 222 | 2 | 221 | 9.97e-64 | 207 |
| Msa1090270 | AT3G18400.1 | 32.738 | 168 | 92 | 7 | 62 | 224 | 5 | 156 | 1.41e-13 | 71.6 |
| Msa1090270 | AT5G18270.2 | 30.041 | 243 | 121 | 14 | 54 | 275 | 13 | 227 | 2.29e-13 | 71.2 |
| Msa1090270 | AT5G18270.1 | 30.041 | 243 | 121 | 14 | 54 | 275 | 13 | 227 | 3.10e-13 | 70.9 |
| Msa1090270 | AT5G39610.1 | 33.721 | 172 | 86 | 7 | 47 | 217 | 10 | 154 | 1.49e-12 | 68.2 |
| Msa1090270 | AT5G53950.1 | 31.019 | 216 | 121 | 10 | 62 | 267 | 17 | 214 | 2.08e-12 | 68.6 |
| Msa1090270 | AT1G01720.1 | 36.111 | 144 | 71 | 8 | 62 | 202 | 7 | 132 | 4.26e-12 | 67.0 |
| Msa1090270 | AT3G04420.2 | 31.056 | 161 | 94 | 7 | 63 | 220 | 4 | 150 | 2.25e-11 | 64.7 |
| Msa1090270 | AT1G02230.1 | 31.361 | 169 | 92 | 8 | 63 | 224 | 4 | 155 | 2.65e-11 | 65.1 |
| Msa1090270 | AT1G02220.1 | 29.375 | 160 | 93 | 6 | 63 | 219 | 4 | 146 | 3.88e-11 | 64.7 |
| Msa1090270 | AT3G12910.1 | 30.864 | 162 | 91 | 8 | 51 | 206 | 9 | 155 | 4.04e-11 | 63.9 |
| Msa1090270 | AT3G04420.1 | 31.056 | 161 | 94 | 7 | 63 | 220 | 4 | 150 | 7.87e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTCTTGGTCTACAAAAT+TGG | 0.165705 | 7_3:-4069913 | None:intergenic |
| TGCCAGTGTGGTCAAGATTT+TGG | 0.220058 | 7_3:-4070699 | None:intergenic |
| TATGGTGAGTTTCTTGTTCT+TGG | 0.221376 | 7_3:-4069926 | None:intergenic |
| ATAGTTGCTTCCGCGGTTTC+AGG | 0.226841 | 7_3:-4069831 | None:intergenic |
| TCCACAACATGTTGACAATT+AGG | 0.244707 | 7_3:-4066969 | None:intergenic |
| AGGTCCAGTGGTCGCAAAAT+TGG | 0.270772 | 7_3:-4069877 | None:intergenic |
| ATTTATCACTACTCTTAAAA+TGG | 0.271764 | 7_3:+4069329 | Msa1090270:CDS |
| CCAGCAGCAGCAAGCCATAT+TGG | 0.276087 | 7_3:+4069785 | Msa1090270:CDS |
| TCGAACCAAGAAAATGTTTC+CGG | 0.290852 | 7_3:-4070553 | None:intergenic |
| TGACATGCCACTGAATCTAT+TGG | 0.299354 | 7_3:+4070522 | Msa1090270:CDS |
| CATCTGATCAAGAGATAATA+TGG | 0.323541 | 7_3:+4069250 | Msa1090270:CDS |
| TCTTCTAACTGAGGAAGATT+TGG | 0.326168 | 7_3:-4070406 | None:intergenic |
| GGATCAAATTTAACACCTTT+AGG | 0.328542 | 7_3:-4069228 | None:intergenic |
| CCACAACATGTTGACAATTA+GGG | 0.332418 | 7_3:-4066968 | None:intergenic |
| ATGTCTTTCTTTAACTGCTC+TGG | 0.340220 | 7_3:-4070667 | None:intergenic |
| GAATCTATTGGATTCACTTC+CGG | 0.358496 | 7_3:+4070534 | Msa1090270:CDS |
| TGTTCTTGGTCTACAAAATT+GGG | 0.368626 | 7_3:-4069912 | None:intergenic |
| GTACACTTGCAACCGCTATA+AGG | 0.374099 | 7_3:+4066889 | Msa1090270:CDS |
| CAGCAGCAGCAAGCCATATT+GGG | 0.389779 | 7_3:+4069786 | Msa1090270:CDS |
| TATAAGCTTTCACTGCTCTA+TGG | 0.392319 | 7_3:-4069512 | None:intergenic |
| CTTTATATGTTTCCAGAGAA+TGG | 0.394253 | 7_3:+4069663 | Msa1090270:CDS |
| TGAACTCCGTTCAAGAAGAT+AGG | 0.395219 | 7_3:-4069615 | None:intergenic |
| GGTTACAAACCTCTGCAAAA+TGG | 0.397380 | 7_3:-4066372 | None:intergenic |
| CCAATATGGCTTGCTGCTGC+TGG | 0.415718 | 7_3:-4069785 | None:intergenic |
| GGTCCAGTGGTCGCAAAATT+GGG | 0.423971 | 7_3:-4069876 | None:intergenic |
| ACCGCTATAAGGTGTGCATC+TGG | 0.428125 | 7_3:+4066900 | Msa1090270:CDS |
| TATGTCCGCTGGCACAAGAC+TGG | 0.431620 | 7_3:+4069582 | Msa1090270:CDS |
| GCAGTGAAAGCTTATAGTAC+TGG | 0.438200 | 7_3:+4069519 | Msa1090270:CDS |
| CGACATTCGATTAAGTCAAC+TGG | 0.441693 | 7_3:+4070747 | Msa1090270:CDS |
| AAAGTTCTACCTGAGGAATA+TGG | 0.448471 | 7_3:-4069944 | None:intergenic |
| AGAATGGCTACTTAATAGTC+AGG | 0.475425 | 7_3:+4070426 | Msa1090270:CDS |
| TTAACACCTTTAGGAAGTCC+AGG | 0.482399 | 7_3:-4069219 | None:intergenic |
| GCCAGTCTCCGAAAAGGCAC+AGG | 0.483606 | 7_3:+4070590 | Msa1090270:CDS |
| AATATAGGTGTTTCACAAGA+TGG | 0.488029 | 7_3:+4069471 | Msa1090270:intron |
| CAGAAGAGGATGAGAGGGAA+GGG | 0.488806 | 7_3:+4069736 | Msa1090270:CDS |
| GTTATGCATCAGTATCATCT+TGG | 0.493181 | 7_3:+4069711 | Msa1090270:CDS |
| CTTTCGACATATGATCATCT+AGG | 0.495768 | 7_3:+4070643 | Msa1090270:CDS |
| TAGAAACTCAATTTCATGTA+GGG | 0.504338 | 7_3:+4070488 | Msa1090270:CDS |
| ACTCATCCTCAGCATTTGCC+AGG | 0.505505 | 7_3:+4069369 | Msa1090270:CDS |
| TTCAAAGCCAGTCTCCGAAA+AGG | 0.507580 | 7_3:+4070584 | Msa1090270:CDS |
| TTTCCAGAGAATGGAGGAAA+AGG | 0.510158 | 7_3:+4069672 | Msa1090270:CDS |
| ACTACTCTTAAAATGGATGA+TGG | 0.510952 | 7_3:+4069336 | Msa1090270:CDS |
| ACAAAATTGGGACTGATAAG+AGG | 0.512652 | 7_3:-4069900 | None:intergenic |
| GTGATAAATGCATCGATGAA+AGG | 0.516322 | 7_3:-4069315 | None:intergenic |
| AAGAGTTTGCTTATGTCCGC+TGG | 0.517104 | 7_3:+4069571 | Msa1090270:CDS |
| TGATAAATGCATCGATGAAA+GGG | 0.518562 | 7_3:-4069314 | None:intergenic |
| ACAGAAGAGGATGAGAGGGA+AGG | 0.522455 | 7_3:+4069735 | Msa1090270:CDS |
| CGAAAGCGGCGAAGAATATG+TGG | 0.522848 | 7_3:+4069546 | Msa1090270:CDS |
| TAGCGGTTGCAAGTGTACTT+TGG | 0.525421 | 7_3:-4066884 | None:intergenic |
| TTCTTGAACGGAGTTCAGAA+AGG | 0.529603 | 7_3:+4069621 | Msa1090270:CDS |
| ATCTTCCTCAGTTAGAAGAA+TGG | 0.529692 | 7_3:+4070410 | Msa1090270:CDS |
| CAATTAGGGCACGCTCTGGT+AGG | 0.534555 | 7_3:-4066954 | None:intergenic |
| CATATTATCTCTTGATCAGA+TGG | 0.535616 | 7_3:-4069249 | None:intergenic |
| TGGCACTTGCTTGCAAAAGT+TGG | 0.539348 | 7_3:+4069270 | Msa1090270:CDS |
| TCTTTCCAGTCTTGTGCCAG+CGG | 0.546974 | 7_3:-4069587 | None:intergenic |
| TTGACAATTAGGGCACGCTC+TGG | 0.548349 | 7_3:-4066958 | None:intergenic |
| GAGTGGCCTGGACTTCCTAA+AGG | 0.554416 | 7_3:+4069213 | Msa1090270:CDS |
| ATGCAGACCATCGTGGTTGG+TGG | 0.556083 | 7_3:+4066860 | Msa1090270:intron |
| GTAGAAACTCAATTTCATGT+AGG | 0.560253 | 7_3:+4070487 | Msa1090270:CDS |
| TGGAACAGAAGAGGATGAGA+GGG | 0.560783 | 7_3:+4069731 | Msa1090270:CDS |
| TCACAGGAGCTATATCGACT+AGG | 0.561856 | 7_3:+4070880 | Msa1090270:CDS |
| CCCTAATTGTCAACATGTTG+TGG | 0.563512 | 7_3:+4066968 | Msa1090270:CDS |
| AGAAACTCACCATATTCCTC+AGG | 0.572055 | 7_3:+4069935 | Msa1090270:CDS |
| TTGCTTGCAAAAGTTGGTGA+AGG | 0.575602 | 7_3:+4069276 | Msa1090270:CDS |
| TAGGTAACACAAGAGTGGCC+TGG | 0.577846 | 7_3:+4069201 | Msa1090270:intron |
| CACAGGAGCTATATCGACTA+GGG | 0.578105 | 7_3:+4070881 | Msa1090270:CDS |
| ATAGTCAGGATGACTGTGAA+GGG | 0.580319 | 7_3:+4070440 | Msa1090270:CDS |
| ACTAAACCTATCTTCTTGAA+CGG | 0.586510 | 7_3:+4069609 | Msa1090270:CDS |
| TGATCATATGTCGAAAGACT+AGG | 0.588679 | 7_3:-4070637 | None:intergenic |
| CTTATAGGAATTCAGCTCAC+AGG | 0.592344 | 7_3:+4070864 | Msa1090270:intron |
| TTGGAACAGAAGAGGATGAG+AGG | 0.602637 | 7_3:+4069730 | Msa1090270:CDS |
| AATAGTCAGGATGACTGTGA+AGG | 0.603938 | 7_3:+4070439 | Msa1090270:CDS |
| TGAAATTGAGTTTCTACCGT+CGG | 0.610371 | 7_3:-4070481 | None:intergenic |
| CAGTTGACTTAATCGAATGT+CGG | 0.615405 | 7_3:-4070746 | None:intergenic |
| AATGCATCGATGAAAGGGTG+AGG | 0.617026 | 7_3:-4069309 | None:intergenic |
| GTATCATCTTGGAACAGAAG+AGG | 0.624650 | 7_3:+4069722 | Msa1090270:CDS |
| AGTAGCCATTCTTCTAACTG+AGG | 0.625387 | 7_3:-4070415 | None:intergenic |
| CCAGTCTCCGAAAAGGCACA+GGG | 0.626166 | 7_3:+4070591 | Msa1090270:CDS |
| ATTCGCAATAGTTGCTTCCG+CGG | 0.627295 | 7_3:-4069838 | None:intergenic |
| TCCAGATGCACACCTTATAG+CGG | 0.632029 | 7_3:-4066901 | None:intergenic |
| CAAGCTCTACATTGCCAGTG+TGG | 0.632863 | 7_3:-4070711 | None:intergenic |
| TATATGCAGACCATCGTGGT+TGG | 0.636765 | 7_3:+4066857 | Msa1090270:intron |
| TCAAGATGTTCCTGAAACCG+CGG | 0.637589 | 7_3:+4069821 | Msa1090270:CDS |
| AGTGAATCCAATAGATTCAG+TGG | 0.638302 | 7_3:-4070529 | None:intergenic |
| TACAAACCTCTGCAAAATGG+AGG | 0.639210 | 7_3:-4066369 | None:intergenic |
| AGAGCAGTTAAAGAAAGACA+TGG | 0.639913 | 7_3:+4070669 | Msa1090270:CDS |
| CATATGTCGAAAGACTAGGC+TGG | 0.640562 | 7_3:-4070633 | None:intergenic |
| GTTGTTAGGTAACACAAGAG+TGG | 0.643631 | 7_3:+4069196 | Msa1090270:intron |
| TATCCACCTGGCAAATGCTG+AGG | 0.644206 | 7_3:-4069375 | None:intergenic |
| ATAGTACTGGAAGTCGAAAG+CGG | 0.647551 | 7_3:+4069532 | Msa1090270:CDS |
| CTTATATATGCAGACCATCG+TGG | 0.659760 | 7_3:+4066853 | Msa1090270:intron |
| TCCGAAAATTGATCTACCGA+CGG | 0.660122 | 7_3:+4070465 | Msa1090270:CDS |
| TATATGTTTCCAGAGAATGG+AGG | 0.668040 | 7_3:+4069666 | Msa1090270:CDS |
| ACTGATAAGAGGAGGTCCAG+TGG | 0.673260 | 7_3:-4069889 | None:intergenic |
| TGCCAAAATCTTGACCACAC+TGG | 0.683464 | 7_3:+4070697 | Msa1090270:CDS |
| CTTTGGTCCACCAACCACGA+TGG | 0.684049 | 7_3:-4066867 | None:intergenic |
| AAATTGGGACTGATAAGAGG+AGG | 0.689769 | 7_3:-4069897 | None:intergenic |
| AGGAGCTATATCGACTAGGG+TGG | 0.690179 | 7_3:+4070884 | Msa1090270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAAATATTAATATT+AGG | + | chr7_3:4067591-4067610 | Msa1090270:intron | 0.0% |
| !! | AAATAAAAATATTAATATTA+GGG | + | chr7_3:4067592-4067611 | Msa1090270:intron | 0.0% |
| !! | ATTATAGAAAAATAATGTTA+GGG | - | chr7_3:4068688-4068707 | None:intergenic | 10.0% |
| !! | TATTATAGAAAAATAATGTT+AGG | - | chr7_3:4068689-4068708 | None:intergenic | 10.0% |
| !! | ATAAAATGAATTTAACATAA+TGG | - | chr7_3:4070799-4070818 | None:intergenic | 10.0% |
| !! | AACAAATCAAAGAAATTTAA+AGG | - | chr7_3:4067206-4067225 | None:intergenic | 15.0% |
| !!! | ACACAGATTTTTATTTATAT+AGG | - | chr7_3:4068631-4068650 | None:intergenic | 15.0% |
| !! | ATACAATAAGAAAATATTAG+TGG | - | chr7_3:4070020-4070039 | None:intergenic | 15.0% |
| !! | AAAAGAATGTCTAAAAATAA+TGG | - | chr7_3:4070109-4070128 | None:intergenic | 15.0% |
| !!! | GAGATTAATTTTAATAGTTT+TGG | + | chr7_3:4070316-4070335 | Msa1090270:intron | 15.0% |
| !!! | TGTTTTAAATCATATTTCAC+TGG | + | chr7_3:4067033-4067052 | Msa1090270:intron | 20.0% |
| !!! | TGTGATTTGTTAAATGAATA+TGG | - | chr7_3:4067138-4067157 | None:intergenic | 20.0% |
| !! | AGAATGTAGAAGAAATTTAA+AGG | - | chr7_3:4067246-4067265 | None:intergenic | 20.0% |
| !! | AAATAAATTGCTCAACTTAA+AGG | - | chr7_3:4067847-4067866 | None:intergenic | 20.0% |
| !! | AATTGTAGATGGATAAATAA+AGG | - | chr7_3:4067911-4067930 | None:intergenic | 20.0% |
| !!! | ACTTATTTTACTTAGAAGTT+AGG | - | chr7_3:4068660-4068679 | None:intergenic | 20.0% |
| !! | TAAGAACAAAGATCAAAATT+GGG | - | chr7_3:4069077-4069096 | None:intergenic | 20.0% |
| !! | ATAAGAACAAAGATCAAAAT+TGG | - | chr7_3:4069078-4069097 | None:intergenic | 20.0% |
| !! | AAGAACAAAGATCAAATTAT+TGG | - | chr7_3:4069109-4069128 | None:intergenic | 20.0% |
| !! | ATATATAAGTGTGATACTTT+AGG | - | chr7_3:4069153-4069172 | None:intergenic | 20.0% |
| !! | TTTGAATAATTTCTGTTGTT+AGG | + | chr7_3:4069182-4069201 | Msa1090270:intron | 20.0% |
| !! | ATTTATCACTACTCTTAAAA+TGG | + | chr7_3:4069329-4069348 | Msa1090270:CDS | 20.0% |
| !! | GCTATATGATTAAACAATAT+AGG | + | chr7_3:4069456-4069475 | Msa1090270:intron | 20.0% |
| !!! | TTTTCTTGTGTAAATGAATT+AGG | + | chr7_3:4070203-4070222 | Msa1090270:intron | 20.0% |
| !!! | ATTTTAATAGTTTTGGTTTG+TGG | + | chr7_3:4070323-4070342 | Msa1090270:intron | 20.0% |
| !! | AAATATGAAAATAACCTAAG+TGG | + | chr7_3:4070346-4070365 | Msa1090270:intron | 20.0% |
| !! | TTTAAAGGAATGTTGATGAA+AGG | - | chr7_3:4067191-4067210 | None:intergenic | 25.0% |
| ! | GGAAAATAGAAAATAAATGG+AGG | - | chr7_3:4067694-4067713 | None:intergenic | 25.0% |
| ! | GTGGGAAAATAGAAAATAAA+TGG | - | chr7_3:4067697-4067716 | None:intergenic | 25.0% |
| ! | ATGGCTCTTAATATTATTTG+TGG | + | chr7_3:4067787-4067806 | Msa1090270:intron | 25.0% |
| ! | TCCATCTACAATTGAAAAAA+AGG | + | chr7_3:4067918-4067937 | Msa1090270:intron | 25.0% |
| !!! | ACCTTTTTTTCAATTGTAGA+TGG | - | chr7_3:4067922-4067941 | None:intergenic | 25.0% |
| ! | AAAACAATGATGATCAATGA+GGG | - | chr7_3:4067981-4068000 | None:intergenic | 25.0% |
| !! | CTCAACAGTAAATTTGAAAT+CGG | + | chr7_3:4068278-4068297 | Msa1090270:intron | 25.0% |
| !! | TCAACAGTAAATTTGAAATC+GGG | + | chr7_3:4068279-4068298 | Msa1090270:intron | 25.0% |
| ! | AAGGATGTTGTATTTGATAT+GGG | - | chr7_3:4068372-4068391 | None:intergenic | 25.0% |
| ! | TTTGTGCTTCATAAAAACTA+TGG | + | chr7_3:4068441-4068460 | Msa1090270:intron | 25.0% |
| ! | ATTTATATAGGCATGAATAG+CGG | - | chr7_3:4068619-4068638 | None:intergenic | 25.0% |
| ! | ATGCAGTTATATCGATATTA+GGG | - | chr7_3:4068718-4068737 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGGGTTTCTGT+TGG | - | chr7_3:4068755-4068774 | None:intergenic | 25.0% |
| ! | AGAGGGAAAGAAAAAAAAAA+GGG | - | chr7_3:4068765-4068784 | None:intergenic | 25.0% |
| ! | AAGAGGGAAAGAAAAAAAAA+AGG | - | chr7_3:4068766-4068785 | None:intergenic | 25.0% |
| ! | AATTTATTCCTGTGTGATTA+GGG | + | chr7_3:4068845-4068864 | Msa1090270:intron | 25.0% |
| ! | CTAAATCATTCACAATGATT+TGG | - | chr7_3:4068973-4068992 | None:intergenic | 25.0% |
| ! | ATGCTATAATGTCATGTATT+TGG | - | chr7_3:4069024-4069043 | None:intergenic | 25.0% |
| ! | AAATACATGACATTATAGCA+TGG | + | chr7_3:4069023-4069042 | Msa1090270:intron | 25.0% |
| !!! | TGTATCTTTTGCTTTGTTTT+TGG | + | chr7_3:4070035-4070054 | Msa1090270:intron | 25.0% |
| !! | ACATTCTTTTGCTTTCTTAT+TGG | + | chr7_3:4070119-4070138 | Msa1090270:intron | 25.0% |
| !! | TGACACGAAATATTAATTTG+TGG | + | chr7_3:4070154-4070173 | Msa1090270:intron | 25.0% |
| ! | AAGAACAAAATTATCCACTT+AGG | - | chr7_3:4070363-4070382 | None:intergenic | 25.0% |
| ! | TAGAAACTCAATTTCATGTA+GGG | + | chr7_3:4070488-4070507 | Msa1090270:CDS | 25.0% |
| AAAGTTTGCAAGCATAATCT+AGG | - | chr7_3:4066526-4066545 | None:intergenic | 30.0% | |
| ! | ACTTTCTGATGTAACTTTTG+CGG | - | chr7_3:4066931-4066950 | None:intergenic | 30.0% |
| ! | GAAGAAATAGATTTAGAGCT+TGG | - | chr7_3:4067169-4067188 | None:intergenic | 30.0% |
| CAAGAGATGCACAAAAAATT+AGG | + | chr7_3:4067435-4067454 | Msa1090270:intron | 30.0% | |
| !! | GAAATTCTAAAATGTACGAC+AGG | + | chr7_3:4067614-4067633 | Msa1090270:intron | 30.0% |
| TGTTTACACTTACCATAGAA+GGG | - | chr7_3:4067724-4067743 | None:intergenic | 30.0% | |
| TTGTTTACACTTACCATAGA+AGG | - | chr7_3:4067725-4067744 | None:intergenic | 30.0% | |
| CAAAACAATGATGATCAATG+AGG | - | chr7_3:4067982-4068001 | None:intergenic | 30.0% | |
| GAAGGATGTTGTATTTGATA+TGG | - | chr7_3:4068373-4068392 | None:intergenic | 30.0% | |
| AATACAACATCCTTCTCTAA+CGG | + | chr7_3:4068378-4068397 | Msa1090270:intron | 30.0% | |
| ! | CAAAGATTAGATGTATTGGT+GGG | - | chr7_3:4068416-4068435 | None:intergenic | 30.0% |
| TCAAAGATTAGATGTATTGG+TGG | - | chr7_3:4068417-4068436 | None:intergenic | 30.0% | |
| ACCAATACATCTAATCTTTG+AGG | + | chr7_3:4068416-4068435 | Msa1090270:intron | 30.0% | |
| ACCTCAAAGATTAGATGTAT+TGG | - | chr7_3:4068420-4068439 | None:intergenic | 30.0% | |
| GAGAGAAGAGAACTATATTA+GGG | - | chr7_3:4068513-4068532 | None:intergenic | 30.0% | |
| TGAGAGAAGAGAACTATATT+AGG | - | chr7_3:4068514-4068533 | None:intergenic | 30.0% | |
| CATGCAGTTATATCGATATT+AGG | - | chr7_3:4068719-4068738 | None:intergenic | 30.0% | |
| GTATTACATCTACGTCTATT+GGG | - | chr7_3:4068816-4068835 | None:intergenic | 30.0% | |
| TGTATTACATCTACGTCTAT+TGG | - | chr7_3:4068817-4068836 | None:intergenic | 30.0% | |
| GAATTTATTCCTGTGTGATT+AGG | + | chr7_3:4068844-4068863 | Msa1090270:intron | 30.0% | |
| ! | TTACTAGCTAGTATTTCTAC+GGG | - | chr7_3:4068883-4068902 | None:intergenic | 30.0% |
| ! | CTTACTAGCTAGTATTTCTA+CGG | - | chr7_3:4068884-4068903 | None:intergenic | 30.0% |
| AGTAGACCAAATGAATGATA+GGG | + | chr7_3:4068907-4068926 | Msa1090270:intron | 30.0% | |
| GGATCAAATTTAACACCTTT+AGG | - | chr7_3:4069231-4069250 | None:intergenic | 30.0% | |
| CATATTATCTCTTGATCAGA+TGG | - | chr7_3:4069252-4069271 | None:intergenic | 30.0% | |
| CATCTGATCAAGAGATAATA+TGG | + | chr7_3:4069250-4069269 | Msa1090270:CDS | 30.0% | |
| ! | TGATAAATGCATCGATGAAA+GGG | - | chr7_3:4069317-4069336 | None:intergenic | 30.0% |
| ACTACTCTTAAAATGGATGA+TGG | + | chr7_3:4069336-4069355 | Msa1090270:CDS | 30.0% | |
| AATATAGGTGTTTCACAAGA+TGG | + | chr7_3:4069471-4069490 | Msa1090270:intron | 30.0% | |
| ACTAAACCTATCTTCTTGAA+CGG | + | chr7_3:4069609-4069628 | Msa1090270:CDS | 30.0% | |
| CTTTATATGTTTCCAGAGAA+TGG | + | chr7_3:4069663-4069682 | Msa1090270:CDS | 30.0% | |
| ! | AAAAGGTGCAAAAACTAACT+GGG | + | chr7_3:4069689-4069708 | Msa1090270:CDS | 30.0% |
| ! | ATCATCTTTTCTTCCCAATA+TGG | - | chr7_3:4069802-4069821 | None:intergenic | 30.0% |
| TGTTCTTGGTCTACAAAATT+GGG | - | chr7_3:4069915-4069934 | None:intergenic | 30.0% | |
| TTGTTCTTGGTCTACAAAAT+TGG | - | chr7_3:4069916-4069935 | None:intergenic | 30.0% | |
| !!! | TTTTGCTTTGTTTTTGGAAG+AGG | + | chr7_3:4070041-4070060 | Msa1090270:intron | 30.0% |
| !!! | TTTGCTTTGTTTTTGGAAGA+GGG | + | chr7_3:4070042-4070061 | Msa1090270:intron | 30.0% |
| ! | TCTTTTGCTTTCTTATTGGT+TGG | + | chr7_3:4070123-4070142 | Msa1090270:intron | 30.0% |
| TCTTGTGTAAATGAATTAGG+AGG | + | chr7_3:4070206-4070225 | Msa1090270:intron | 30.0% | |
| ! | AATAGTTTAGCTTAAGACCA+GGG | + | chr7_3:4070229-4070248 | Msa1090270:intron | 30.0% |
| TGAATTAAGAATTAGAACCC+TGG | - | chr7_3:4070249-4070268 | None:intergenic | 30.0% | |
| TTTCTAACACCAATTCAGAA+TGG | + | chr7_3:4070273-4070292 | Msa1090270:intron | 30.0% | |
| TTCTAACACCAATTCAGAAT+GGG | + | chr7_3:4070274-4070293 | Msa1090270:intron | 30.0% | |
| GTAGAAACTCAATTTCATGT+AGG | + | chr7_3:4070487-4070506 | Msa1090270:CDS | 30.0% | |
| ! | TGATGCATTTTTGTGCTTAT+AGG | + | chr7_3:4070849-4070868 | Msa1090270:intron | 30.0% |
| TCGAAGTTGTGATGTAGTTA+TGG | + | chr7_3:4066474-4066493 | Msa1090270:intron | 35.0% | |
| !!! | GCAAACTTTTTCTGAAACCT+AGG | + | chr7_3:4066537-4066556 | Msa1090270:intron | 35.0% |
| TCAACCACATTTAAGTCCAA+CGG | - | chr7_3:4066601-4066620 | None:intergenic | 35.0% | |
| ATTTCGCCTTCATTCTGATT+CGG | + | chr7_3:4066622-4066641 | Msa1090270:intron | 35.0% | |
| CCACAACATGTTGACAATTA+GGG | - | chr7_3:4066971-4066990 | None:intergenic | 35.0% | |
| TCCACAACATGTTGACAATT+AGG | - | chr7_3:4066972-4066991 | None:intergenic | 35.0% | |
| ATATTGCATTTCTGTGCGTA+AGG | + | chr7_3:4067080-4067099 | Msa1090270:intron | 35.0% | |
| TGTGCGTAAGGTTTATTTCA+TGG | + | chr7_3:4067092-4067111 | Msa1090270:intron | 35.0% | |
| TACTCCTAAGACATTGATCA+CGG | + | chr7_3:4067279-4067298 | Msa1090270:intron | 35.0% | |
| AAACTGTCGTCAAATTTCGT+CGG | + | chr7_3:4067743-4067762 | Msa1090270:intron | 35.0% | |
| ATATTAAGAGCCATGCTATG+CGG | - | chr7_3:4067781-4067800 | None:intergenic | 35.0% | |
| AATCCTTGTAGATGTGTCTA+AGG | + | chr7_3:4068012-4068031 | Msa1090270:intron | 35.0% | |
| ATACAACATCCTTCTCTAAC+GGG | + | chr7_3:4068379-4068398 | Msa1090270:intron | 35.0% | |
| ATTGAATTTCCCGTTAGAGA+AGG | - | chr7_3:4068391-4068410 | None:intergenic | 35.0% | |
| TCTTTCCCTCTTCTTCTAAA+CGG | + | chr7_3:4068774-4068793 | Msa1090270:intron | 35.0% | |
| TAAGACCGTTTAGAAGAAGA+GGG | - | chr7_3:4068782-4068801 | None:intergenic | 35.0% | |
| ATAAGACCGTTTAGAAGAAG+AGG | - | chr7_3:4068783-4068802 | None:intergenic | 35.0% | |
| CAGTAGACCAAATGAATGAT+AGG | + | chr7_3:4068906-4068925 | Msa1090270:intron | 35.0% | |
| CTATTGCCCTATCATTCATT+TGG | - | chr7_3:4068916-4068935 | None:intergenic | 35.0% | |
| CAAATGAATGATAGGGCAAT+AGG | + | chr7_3:4068914-4068933 | Msa1090270:intron | 35.0% | |
| ! | GTGATAAATGCATCGATGAA+AGG | - | chr7_3:4069318-4069337 | None:intergenic | 35.0% |
| TAAAGCTTAGATTATCCACC+TGG | - | chr7_3:4069390-4069409 | None:intergenic | 35.0% | |
| TATAAGCTTTCACTGCTCTA+TGG | - | chr7_3:4069515-4069534 | None:intergenic | 35.0% | |
| GAAAGGCTGCAAAAAGATTA+TGG | + | chr7_3:4069638-4069657 | Msa1090270:CDS | 35.0% | |
| TATATGTTTCCAGAGAATGG+AGG | + | chr7_3:4069666-4069685 | Msa1090270:CDS | 35.0% | |
| ! | GAAAAGGTGCAAAAACTAAC+TGG | + | chr7_3:4069688-4069707 | Msa1090270:CDS | 35.0% |
| GTTATGCATCAGTATCATCT+TGG | + | chr7_3:4069711-4069730 | Msa1090270:CDS | 35.0% | |
| ACAAAATTGGGACTGATAAG+AGG | - | chr7_3:4069903-4069922 | None:intergenic | 35.0% | |
| TATGGTGAGTTTCTTGTTCT+TGG | - | chr7_3:4069929-4069948 | None:intergenic | 35.0% | |
| AAAGTTCTACCTGAGGAATA+TGG | - | chr7_3:4069947-4069966 | None:intergenic | 35.0% | |
| GAAGTTAAAAGTTCTACCTG+AGG | - | chr7_3:4069954-4069973 | None:intergenic | 35.0% | |
| TATTAGTGGCAGATGATAAC+TGG | - | chr7_3:4070006-4070025 | None:intergenic | 35.0% | |
| ! | GAATAGTTTAGCTTAAGACC+AGG | + | chr7_3:4070228-4070247 | Msa1090270:intron | 35.0% |
| GAATCATTCCCATTCTGAAT+TGG | - | chr7_3:4070285-4070304 | None:intergenic | 35.0% | |
| TCTTCTAACTGAGGAAGATT+TGG | - | chr7_3:4070409-4070428 | None:intergenic | 35.0% | |
| ATCTTCCTCAGTTAGAAGAA+TGG | + | chr7_3:4070410-4070429 | Msa1090270:CDS | 35.0% | |
| AGAATGGCTACTTAATAGTC+AGG | + | chr7_3:4070426-4070445 | Msa1090270:CDS | 35.0% | |
| TGAAATTGAGTTTCTACCGT+CGG | - | chr7_3:4070484-4070503 | None:intergenic | 35.0% | |
| AGTGAATCCAATAGATTCAG+TGG | - | chr7_3:4070532-4070551 | None:intergenic | 35.0% | |
| GAATCTATTGGATTCACTTC+CGG | + | chr7_3:4070534-4070553 | Msa1090270:CDS | 35.0% | |
| TCGAACCAAGAAAATGTTTC+CGG | - | chr7_3:4070556-4070575 | None:intergenic | 35.0% | |
| TGATCATATGTCGAAAGACT+AGG | - | chr7_3:4070640-4070659 | None:intergenic | 35.0% | |
| CTTTCGACATATGATCATCT+AGG | + | chr7_3:4070643-4070662 | Msa1090270:CDS | 35.0% | |
| ATGTCTTTCTTTAACTGCTC+TGG | - | chr7_3:4070670-4070689 | None:intergenic | 35.0% | |
| AGAGCAGTTAAAGAAAGACA+TGG | + | chr7_3:4070669-4070688 | Msa1090270:CDS | 35.0% | |
| ! | CAGTTGACTTAATCGAATGT+CGG | - | chr7_3:4070749-4070768 | None:intergenic | 35.0% |
| TACAAACCTCTGCAAAATGG+AGG | - | chr7_3:4066372-4066391 | None:intergenic | 40.0% | |
| GGTTACAAACCTCTGCAAAA+TGG | - | chr7_3:4066375-4066394 | None:intergenic | 40.0% | |
| GTAACCACATGTAGCTTATG+CGG | + | chr7_3:4066389-4066408 | Msa1090270:intron | 40.0% | |
| TAACCACATGTAGCTTATGC+GGG | + | chr7_3:4066390-4066409 | Msa1090270:intron | 40.0% | |
| CTACATCACAACTTCGACTT+GGG | - | chr7_3:4066471-4066490 | None:intergenic | 40.0% | |
| ACTACATCACAACTTCGACT+TGG | - | chr7_3:4066472-4066491 | None:intergenic | 40.0% | |
| CTGAAACCTAGGTATGTTGT+CGG | + | chr7_3:4066548-4066567 | Msa1090270:intron | 40.0% | |
| TGAAACCTAGGTATGTTGTC+GGG | + | chr7_3:4066549-4066568 | Msa1090270:intron | 40.0% | |
| GTTTGAATCGTGGATGATGT+GGG | - | chr7_3:4066578-4066597 | None:intergenic | 40.0% | |
| AAACCCGTTGGACTTAAATG+TGG | + | chr7_3:4066594-4066613 | Msa1090270:intron | 40.0% | |
| CAACCACATTTAAGTCCAAC+GGG | - | chr7_3:4066600-4066619 | None:intergenic | 40.0% | |
| AACCAAATCCCCCAATTAAG+CGG | - | chr7_3:4066654-4066673 | None:intergenic | 40.0% | |
| TTCAAGAACAGTGAACGTGT+TGG | - | chr7_3:4066786-4066805 | None:intergenic | 40.0% | |
| CTTATATATGCAGACCATCG+TGG | + | chr7_3:4066853-4066872 | Msa1090270:intron | 40.0% | |
| CCCTAATTGTCAACATGTTG+TGG | + | chr7_3:4066968-4066987 | Msa1090270:CDS | 40.0% | |
| TCTTAGGAGTAAGCACAATG+GGG | - | chr7_3:4067270-4067289 | None:intergenic | 40.0% | |
| GTCTTAGGAGTAAGCACAAT+GGG | - | chr7_3:4067271-4067290 | None:intergenic | 40.0% | |
| TGTCTTAGGAGTAAGCACAA+TGG | - | chr7_3:4067272-4067291 | None:intergenic | 40.0% | |
| ATGACCGTGATCAATGTCTT+AGG | - | chr7_3:4067286-4067305 | None:intergenic | 40.0% | |
| AATCGAAGAAACTCCTCCAT+AGG | + | chr7_3:4067311-4067330 | Msa1090270:intron | 40.0% | |
| CAGTGTAATTAAGCCTATGG+AGG | - | chr7_3:4067327-4067346 | None:intergenic | 40.0% | |
| GTGCAGTGTAATTAAGCCTA+TGG | - | chr7_3:4067330-4067349 | None:intergenic | 40.0% | |
| TCTCTAAGCTATCCACTCTT+CGG | + | chr7_3:4067366-4067385 | Msa1090270:intron | 40.0% | |
| TATCCACTCTTCGGTTATTC+TGG | + | chr7_3:4067375-4067394 | Msa1090270:intron | 40.0% | |
| TTACACTTACCATAGAAGGG+TGG | - | chr7_3:4067721-4067740 | None:intergenic | 40.0% | |
| ACTCCTTAGACACATCTACA+AGG | - | chr7_3:4068018-4068037 | None:intergenic | 40.0% | |
| !! | ATGTGTCTAAGGAGTGTCTA+TGG | + | chr7_3:4068023-4068042 | Msa1090270:intron | 40.0% |
| TCTAATACGCGTCATACAAG+TGG | + | chr7_3:4068090-4068109 | Msa1090270:intron | 40.0% | |
| TACAAGTGGCATACTTGAGT+CGG | + | chr7_3:4068104-4068123 | Msa1090270:intron | 40.0% | |
| !! | GGATCTAAAGAGTGTTGCAA+AGG | + | chr7_3:4068125-4068144 | Msa1090270:intron | 40.0% |
| TGAATTCAAGTCATGTGTCG+CGG | - | chr7_3:4068228-4068247 | None:intergenic | 40.0% | |
| GCTACAACGTGAAATCTCTA+TGG | - | chr7_3:4068254-4068273 | None:intergenic | 40.0% | |
| ! | ACCACCCATTTGAGATTAGA+CGG | + | chr7_3:4068346-4068365 | Msa1090270:intron | 40.0% |
| TTAGGGCTCAAGAATGTGAT+TGG | - | chr7_3:4068496-4068515 | None:intergenic | 40.0% | |
| AGAGAGAAGAGAACTCTACT+GGG | - | chr7_3:4068559-4068578 | None:intergenic | 40.0% | |
| AATGATAGGGCAATAGGTAG+AGG | + | chr7_3:4068920-4068939 | Msa1090270:intron | 40.0% | |
| GTTGTTAGGTAACACAAGAG+TGG | + | chr7_3:4069196-4069215 | Msa1090270:intron | 40.0% | |
| ! | TTAACACCTTTAGGAAGTCC+AGG | - | chr7_3:4069222-4069241 | None:intergenic | 40.0% |
| !! | TTGCTTGCAAAAGTTGGTGA+AGG | + | chr7_3:4069276-4069295 | Msa1090270:CDS | 40.0% |
| GCAGTGAAAGCTTATAGTAC+TGG | + | chr7_3:4069519-4069538 | Msa1090270:CDS | 40.0% | |
| ! | ATAGTACTGGAAGTCGAAAG+CGG | + | chr7_3:4069532-4069551 | Msa1090270:CDS | 40.0% |
| TGAACTCCGTTCAAGAAGAT+AGG | - | chr7_3:4069618-4069637 | None:intergenic | 40.0% | |
| TTCTTGAACGGAGTTCAGAA+AGG | + | chr7_3:4069621-4069640 | Msa1090270:CDS | 40.0% | |
| TTTCCAGAGAATGGAGGAAA+AGG | + | chr7_3:4069672-4069691 | Msa1090270:CDS | 40.0% | |
| GTATCATCTTGGAACAGAAG+AGG | + | chr7_3:4069722-4069741 | Msa1090270:CDS | 40.0% | |
| AAATTGGGACTGATAAGAGG+AGG | - | chr7_3:4069900-4069919 | None:intergenic | 40.0% | |
| AGAAACTCACCATATTCCTC+AGG | + | chr7_3:4069935-4069954 | Msa1090270:CDS | 40.0% | |
| ! | GAGGAAGATTTGGTAGAATC+TGG | - | chr7_3:4070399-4070418 | None:intergenic | 40.0% |
| AGTAGCCATTCTTCTAACTG+AGG | - | chr7_3:4070418-4070437 | None:intergenic | 40.0% | |
| AATAGTCAGGATGACTGTGA+AGG | + | chr7_3:4070439-4070458 | Msa1090270:CDS | 40.0% | |
| ATAGTCAGGATGACTGTGAA+GGG | + | chr7_3:4070440-4070459 | Msa1090270:CDS | 40.0% | |
| TCCGAAAATTGATCTACCGA+CGG | + | chr7_3:4070465-4070484 | Msa1090270:CDS | 40.0% | |
| ! | ACCGTCGGTAGATCAATTTT+CGG | - | chr7_3:4070469-4070488 | None:intergenic | 40.0% |
| TGACATGCCACTGAATCTAT+TGG | + | chr7_3:4070522-4070541 | Msa1090270:CDS | 40.0% | |
| ! | CACTTCCGGAAACATTTTCT+TGG | + | chr7_3:4070548-4070567 | Msa1090270:CDS | 40.0% |
| ! | TCATTTTCCCTGTGCCTTTT+CGG | - | chr7_3:4070601-4070620 | None:intergenic | 40.0% |
| CGACATTCGATTAAGTCAAC+TGG | + | chr7_3:4070747-4070766 | Msa1090270:CDS | 40.0% | |
| ! | TGGAAGATCATTGAGAGCAT+TGG | - | chr7_3:4070779-4070798 | None:intergenic | 40.0% |
| CTTATAGGAATTCAGCTCAC+AGG | + | chr7_3:4070864-4070883 | Msa1090270:intron | 40.0% | |
| ! | TGAGATCCTCCATTTTGCAG+AGG | + | chr7_3:4066363-4066382 | Msa1090270:CDS | 45.0% |
| AACCACATGTAGCTTATGCG+GGG | + | chr7_3:4066391-4066410 | Msa1090270:intron | 45.0% | |
| GCACAATTGCAGTTGCATTG+TGG | + | chr7_3:4066413-4066432 | Msa1090270:intron | 45.0% | |
| GGTTTGAATCGTGGATGATG+TGG | - | chr7_3:4066579-4066598 | None:intergenic | 45.0% | |
| GAGGTTGCAATGAGCAATGA+AGG | - | chr7_3:4066679-4066698 | None:intergenic | 45.0% | |
| AACGTGTTGGAGGTTGCAAT+GGG | - | chr7_3:4066773-4066792 | None:intergenic | 45.0% | |
| AAGAACAGTGAACGTGTTGG+AGG | - | chr7_3:4066783-4066802 | None:intergenic | 45.0% | |
| TATATGCAGACCATCGTGGT+TGG | + | chr7_3:4066857-4066876 | Msa1090270:intron | 45.0% | |
| TAGCGGTTGCAAGTGTACTT+TGG | - | chr7_3:4066887-4066906 | None:intergenic | 45.0% | |
| GTACACTTGCAACCGCTATA+AGG | + | chr7_3:4066889-4066908 | Msa1090270:CDS | 45.0% | |
| TCCAGATGCACACCTTATAG+CGG | - | chr7_3:4066904-4066923 | None:intergenic | 45.0% | |
| GGATAGCTTAGAGAGACAAG+TGG | - | chr7_3:4067360-4067379 | None:intergenic | 45.0% | |
| AGTGCATTTCGTGCTTTCGT+TGG | - | chr7_3:4067644-4067663 | None:intergenic | 45.0% | |
| TTACCATAGAAGGGTGGTGT+GGG | - | chr7_3:4067715-4067734 | None:intergenic | 45.0% | |
| GTTGTTTGTACCGCATAGCA+TGG | + | chr7_3:4067768-4067787 | Msa1090270:intron | 45.0% | |
| GACACTCGTACGACACATAT+CGG | - | chr7_3:4068183-4068202 | None:intergenic | 45.0% | |
| GATATGTGTCGTACGAGTGT+CGG | + | chr7_3:4068182-4068201 | Msa1090270:intron | 45.0% | |
| GGCAGTCGAAGTTTCAAACA+CGG | + | chr7_3:4068300-4068319 | Msa1090270:intron | 45.0% | |
| TGGGCCGTCTAATCTCAAAT+GGG | - | chr7_3:4068353-4068372 | None:intergenic | 45.0% | |
| ATGGGCCGTCTAATCTCAAA+TGG | - | chr7_3:4068354-4068373 | None:intergenic | 45.0% | |
| GAGAGAAGAGAACTCTACTG+GGG | - | chr7_3:4068558-4068577 | None:intergenic | 45.0% | |
| CAGAGAGAAGAGAACTCTAC+TGG | - | chr7_3:4068560-4068579 | None:intergenic | 45.0% | |
| TTCCTGTGTGATTAGGGCTT+TGG | + | chr7_3:4068851-4068870 | Msa1090270:intron | 45.0% | |
| TGGCACTTGCTTGCAAAAGT+TGG | + | chr7_3:4069270-4069289 | Msa1090270:CDS | 45.0% | |
| ! | AATGCATCGATGAAAGGGTG+AGG | - | chr7_3:4069312-4069331 | None:intergenic | 45.0% |
| ! | AAGAGTTTGCTTATGTCCGC+TGG | + | chr7_3:4069571-4069590 | Msa1090270:CDS | 45.0% |
| TTGGAACAGAAGAGGATGAG+AGG | + | chr7_3:4069730-4069749 | Msa1090270:CDS | 45.0% | |
| TGGAACAGAAGAGGATGAGA+GGG | + | chr7_3:4069731-4069750 | Msa1090270:CDS | 45.0% | |
| TCAAGATGTTCCTGAAACCG+CGG | + | chr7_3:4069821-4069840 | Msa1090270:CDS | 45.0% | |
| ATTCGCAATAGTTGCTTCCG+CGG | - | chr7_3:4069841-4069860 | None:intergenic | 45.0% | |
| TTCAAAGCCAGTCTCCGAAA+AGG | + | chr7_3:4070584-4070603 | Msa1090270:CDS | 45.0% | |
| CATATGTCGAAAGACTAGGC+TGG | - | chr7_3:4070636-4070655 | None:intergenic | 45.0% | |
| TGCCAAAATCTTGACCACAC+TGG | + | chr7_3:4070697-4070716 | Msa1090270:CDS | 45.0% | |
| ! | TGCCAGTGTGGTCAAGATTT+TGG | - | chr7_3:4070702-4070721 | None:intergenic | 45.0% |
| ! | TCACAGGAGCTATATCGACT+AGG | + | chr7_3:4070880-4070899 | Msa1090270:CDS | 45.0% |
| ! | CACAGGAGCTATATCGACTA+GGG | + | chr7_3:4070881-4070900 | Msa1090270:CDS | 45.0% |
| TTGCAGTTGCATTGTGGTCG+TGG | + | chr7_3:4066419-4066438 | Msa1090270:intron | 50.0% | |
| GGAATCCCGACAACATACCT+AGG | - | chr7_3:4066557-4066576 | None:intergenic | 50.0% | |
| CATCCACGATTCAAACCCGT+TGG | + | chr7_3:4066582-4066601 | Msa1090270:intron | 50.0% | |
| ! | AGTCCAACGGGTTTGAATCG+TGG | - | chr7_3:4066588-4066607 | None:intergenic | 50.0% |
| CTAGGGCCGAATCAGAATGA+AGG | - | chr7_3:4066631-4066650 | None:intergenic | 50.0% | |
| ATCCCCCAATTAAGCGGCTA+GGG | - | chr7_3:4066648-4066667 | None:intergenic | 50.0% | |
| AATCCCCCAATTAAGCGGCT+AGG | - | chr7_3:4066649-4066668 | None:intergenic | 50.0% | |
| AGCCGCTTAATTGGGGGATT+TGG | + | chr7_3:4066649-4066668 | Msa1090270:intron | 50.0% | |
| AAGAACAGTGAACGCGTTGG+AGG | - | chr7_3:4066698-4066717 | None:intergenic | 50.0% | |
| TCCAACGCGTTCACTGTTCT+TGG | + | chr7_3:4066697-4066716 | Msa1090270:intron | 50.0% | |
| CCAACGCGTTCACTGTTCTT+GGG | + | chr7_3:4066698-4066717 | Msa1090270:intron | 50.0% | |
| TCCCACATCATCCATGCTTC+AGG | + | chr7_3:4066722-4066741 | Msa1090270:intron | 50.0% | |
| GCCTGAAGCATGGATGATGT+GGG | - | chr7_3:4066726-4066745 | None:intergenic | 50.0% | |
| ATCCATGCTTCAGGCCCATT+GGG | + | chr7_3:4066731-4066750 | Msa1090270:intron | 50.0% | |
| GAACGTGTTGGAGGTTGCAA+TGG | - | chr7_3:4066774-4066793 | None:intergenic | 50.0% | |
| ACCGCTATAAGGTGTGCATC+TGG | + | chr7_3:4066900-4066919 | Msa1090270:CDS | 50.0% | |
| TTGACAATTAGGGCACGCTC+TGG | - | chr7_3:4066961-4066980 | None:intergenic | 50.0% | |
| CGACCAGAATAACCGAAGAG+TGG | - | chr7_3:4067381-4067400 | None:intergenic | 50.0% | |
| TCTGGTCGATGACATTCGTC+AGG | + | chr7_3:4067393-4067412 | Msa1090270:intron | 50.0% | |
| GTCGATGACATTCGTCAGGT+TGG | + | chr7_3:4067397-4067416 | Msa1090270:intron | 50.0% | |
| TTTCCCACACCACCCTTCTA+TGG | + | chr7_3:4067709-4067728 | Msa1090270:intron | 50.0% | |
| CTTACCATAGAAGGGTGGTG+TGG | - | chr7_3:4067716-4067735 | None:intergenic | 50.0% | |
| GCCGTCTAATCTCAAATGGG+TGG | - | chr7_3:4068350-4068369 | None:intergenic | 50.0% | |
| TTTCTGTTGGCAAGCAGGCA+AGG | - | chr7_3:4068742-4068761 | None:intergenic | 50.0% | |
| AAGGGTTTCTGTTGGCAAGC+AGG | - | chr7_3:4068747-4068766 | None:intergenic | 50.0% | |
| CTCCAAAGCCCTAATCACAC+AGG | - | chr7_3:4068856-4068875 | None:intergenic | 50.0% | |
| TAGGTAACACAAGAGTGGCC+TGG | + | chr7_3:4069201-4069220 | Msa1090270:intron | 50.0% | |
| ACTCATCCTCAGCATTTGCC+AGG | + | chr7_3:4069369-4069388 | Msa1090270:CDS | 50.0% | |
| TATCCACCTGGCAAATGCTG+AGG | - | chr7_3:4069378-4069397 | None:intergenic | 50.0% | |
| CGAAAGCGGCGAAGAATATG+TGG | + | chr7_3:4069546-4069565 | Msa1090270:CDS | 50.0% | |
| ! | TCTTTCCAGTCTTGTGCCAG+CGG | - | chr7_3:4069590-4069609 | None:intergenic | 50.0% |
| ! | GCACCTTTTCCTCCATTCTC+TGG | - | chr7_3:4069678-4069697 | None:intergenic | 50.0% |
| ACAGAAGAGGATGAGAGGGA+AGG | + | chr7_3:4069735-4069754 | Msa1090270:CDS | 50.0% | |
| CAGAAGAGGATGAGAGGGAA+GGG | + | chr7_3:4069736-4069755 | Msa1090270:CDS | 50.0% | |
| CAGCAGCAGCAAGCCATATT+GGG | + | chr7_3:4069786-4069805 | Msa1090270:CDS | 50.0% | |
| ATAGTTGCTTCCGCGGTTTC+AGG | - | chr7_3:4069834-4069853 | None:intergenic | 50.0% | |
| ! | ACTCCCAATTTTGCGACCAC+TGG | + | chr7_3:4069873-4069892 | Msa1090270:CDS | 50.0% |
| GGTCCAGTGGTCGCAAAATT+GGG | - | chr7_3:4069879-4069898 | None:intergenic | 50.0% | |
| AGGTCCAGTGGTCGCAAAAT+TGG | - | chr7_3:4069880-4069899 | None:intergenic | 50.0% | |
| ACTGATAAGAGGAGGTCCAG+TGG | - | chr7_3:4069892-4069911 | None:intergenic | 50.0% | |
| CAAGCTCTACATTGCCAGTG+TGG | - | chr7_3:4070714-4070733 | None:intergenic | 50.0% | |
| ! | AGGAGCTATATCGACTAGGG+TGG | + | chr7_3:4070884-4070903 | Msa1090270:CDS | 50.0% |
| TGCCCCGCATAAGCTACATG+TGG | - | chr7_3:4066396-4066415 | None:intergenic | 55.0% | |
| TTCGGCCCTAGCCGCTTAAT+TGG | + | chr7_3:4066640-4066659 | Msa1090270:intron | 55.0% | |
| TCGGCCCTAGCCGCTTAATT+GGG | + | chr7_3:4066641-4066660 | Msa1090270:intron | 55.0% | |
| CCCAAGAACAGTGAACGCGT+TGG | - | chr7_3:4066701-4066720 | None:intergenic | 55.0% | |
| GGCCTGAAGCATGGATGATG+TGG | - | chr7_3:4066727-4066746 | None:intergenic | 55.0% | |
| CATCCATGCTTCAGGCCCAT+TGG | + | chr7_3:4066730-4066749 | Msa1090270:intron | 55.0% | |
| ATGCAGACCATCGTGGTTGG+TGG | + | chr7_3:4066860-4066879 | Msa1090270:intron | 55.0% | |
| CTTTGGTCCACCAACCACGA+TGG | - | chr7_3:4066870-4066889 | None:intergenic | 55.0% | |
| CAATTAGGGCACGCTCTGGT+AGG | - | chr7_3:4066957-4066976 | None:intergenic | 55.0% | |
| TGTGTCGCGGTGTCTGACAT+GGG | - | chr7_3:4068215-4068234 | None:intergenic | 55.0% | |
| ATGTGTCGCGGTGTCTGACA+TGG | - | chr7_3:4068216-4068235 | None:intergenic | 55.0% | |
| GAGTGGCCTGGACTTCCTAA+AGG | + | chr7_3:4069213-4069232 | Msa1090270:CDS | 55.0% | |
| CATCCTCAGCATTTGCCAGG+TGG | + | chr7_3:4069372-4069391 | Msa1090270:intron | 55.0% | |
| TATGTCCGCTGGCACAAGAC+TGG | + | chr7_3:4069582-4069601 | Msa1090270:CDS | 55.0% | |
| !! | CCAATATGGCTTGCTGCTGC+TGG | - | chr7_3:4069788-4069807 | None:intergenic | 55.0% |
| CCAGCAGCAGCAAGCCATAT+TGG | + | chr7_3:4069785-4069804 | Msa1090270:CDS | 55.0% | |
| ! | CCAGTCTCCGAAAAGGCACA+GGG | + | chr7_3:4070591-4070610 | Msa1090270:CDS | 55.0% |
| CGGCCCTAGCCGCTTAATTG+GGG | + | chr7_3:4066642-4066661 | Msa1090270:intron | 60.0% | |
| GGCCCTAGCCGCTTAATTGG+GGG | + | chr7_3:4066643-4066662 | Msa1090270:intron | 60.0% | |
| GCCTCACACTTGGGCCCAAT+GGG | - | chr7_3:4066748-4066767 | None:intergenic | 60.0% | |
| CATTGGGCCCAAGTGTGAGG+CGG | + | chr7_3:4066747-4066766 | Msa1090270:intron | 60.0% | |
| CAATGGGCCGCCTCACACTT+GGG | - | chr7_3:4066757-4066776 | None:intergenic | 60.0% | |
| ! | GCCAGTCTCCGAAAAGGCAC+AGG | + | chr7_3:4070590-4070609 | Msa1090270:CDS | 60.0% |
| ! | CCCTGTGCCTTTTCGGAGAC+TGG | - | chr7_3:4070594-4070613 | None:intergenic | 60.0% |
| GGCCCAATGGGCCTGAAGCA+TGG | - | chr7_3:4066736-4066755 | None:intergenic | 65.0% | |
| GCCCATTGGGCCCAAGTGTG+AGG | + | chr7_3:4066744-4066763 | Msa1090270:intron | 65.0% | |
| CGCCTCACACTTGGGCCCAA+TGG | - | chr7_3:4066749-4066768 | None:intergenic | 65.0% | |
| GCAATGGGCCGCCTCACACT+TGG | - | chr7_3:4066758-4066777 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 4066359 | 4070909 | 4066359 | ID=Msa1090270;Name=Msa1090270 |
| chr7_3 | mRNA | 4066359 | 4070909 | 4066359 | ID=Msa1090270-mRNA-1;Parent=Msa1090270;Name=Msa1090270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.83|1|0.83|6|0|411 |
| chr7_3 | exon | 4066359 | 4066384 | 4066359 | ID=Msa1090270-mRNA-1:exon:1520;Parent=Msa1090270-mRNA-1 |
| chr7_3 | exon | 4066866 | 4067001 | 4066866 | ID=Msa1090270-mRNA-1:exon:1521;Parent=Msa1090270-mRNA-1 |
| chr7_3 | exon | 4069204 | 4069390 | 4069204 | ID=Msa1090270-mRNA-1:exon:1522;Parent=Msa1090270-mRNA-1 |
| chr7_3 | exon | 4069478 | 4069956 | 4069478 | ID=Msa1090270-mRNA-1:exon:1523;Parent=Msa1090270-mRNA-1 |
| chr7_3 | exon | 4070400 | 4070768 | 4070400 | ID=Msa1090270-mRNA-1:exon:1524;Parent=Msa1090270-mRNA-1 |
| chr7_3 | exon | 4070871 | 4070909 | 4070871 | ID=Msa1090270-mRNA-1:exon:1525;Parent=Msa1090270-mRNA-1 |
| chr7_3 | CDS | 4066359 | 4066384 | 4066359 | ID=Msa1090270-mRNA-1:cds;Parent=Msa1090270-mRNA-1 |
| chr7_3 | CDS | 4066866 | 4067001 | 4066866 | ID=Msa1090270-mRNA-1:cds;Parent=Msa1090270-mRNA-1 |
| chr7_3 | CDS | 4069204 | 4069390 | 4069204 | ID=Msa1090270-mRNA-1:cds;Parent=Msa1090270-mRNA-1 |
| chr7_3 | CDS | 4069478 | 4069956 | 4069478 | ID=Msa1090270-mRNA-1:cds;Parent=Msa1090270-mRNA-1 |
| chr7_3 | CDS | 4070400 | 4070768 | 4070400 | ID=Msa1090270-mRNA-1:cds;Parent=Msa1090270-mRNA-1 |
| chr7_3 | CDS | 4070871 | 4070909 | 4070871 | ID=Msa1090270-mRNA-1:cds;Parent=Msa1090270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
