AlfalfaGEDB | Msa1090390

M. sativa cultivar zhongmu-4 / Msa1090390

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1090390	XP_039683337.1	93.443	183	12	0	26	208	1	183	1.77e-121	355

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1090390	sp\|Q9C7U7\|MYB20_ARATH	76.744	129	30	0	26	154	1	129	1.41e-71	221

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1090390	A0A396GYJ1	93.443	183	12	0	26	208	1	183	8.44e-122	355

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1090390	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1090390	MtrunA17_Chr7g0228891	93.443	183	12	0	26	208	1	183	1.63e-125	355
Msa1090390	MtrunA17_Chr5g0434571	72.973	148	37	1	26	170	37	184	2.78e-74	228
Msa1090390	MtrunA17_Chr3g0110351	63.784	185	62	2	26	208	1	182	1.53e-73	224
Msa1090390	MtrunA17_Chr4g0057031	74.242	132	34	0	26	157	1	132	8.49e-70	214
Msa1090390	MtrunA17_Chr4g0039971	58.857	175	61	3	26	193	2	172	1.28e-62	198
Msa1090390	MtrunA17_Chr8g0349261	68.889	135	40	2	26	158	1	135	2.04e-62	196
Msa1090390	MtrunA17_Chr7g0217741	61.806	144	55	0	26	169	1	144	1.63e-61	194
Msa1090390	MtrunA17_Chr6g0453471	67.969	128	41	0	26	153	1	128	3.72e-61	194
Msa1090390	MtrunA17_Chr1g0193371	55.952	168	71	2	26	193	1	165	6.73e-61	194
Msa1090390	MtrunA17_Chr3g0115821	66.406	128	43	0	26	153	1	128	3.70e-60	191

Showing 1 to 10 of 165 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1090390	AT5G14340.1	70.286	175	47	2	26	198	13	184	1.50e-85	254
Msa1090390	AT5G16600.1	75.556	135	33	0	26	160	1	135	8.96e-75	229
Msa1090390	AT1G66230.1	76.744	129	30	0	26	154	1	129	1.44e-72	221
Msa1090390	AT4G22680.1	69.014	142	44	0	26	167	1	142	2.47e-70	215
Msa1090390	AT4G12350.1	59.064	171	65	2	26	196	1	166	2.64e-66	206
Msa1090390	AT3G61250.1	68.992	129	40	0	26	154	1	129	6.45e-62	195
Msa1090390	AT3G02940.2	67.969	128	41	0	26	153	1	128	1.47e-61	194
Msa1090390	AT5G62320.1	56.886	167	63	2	27	186	3	167	2.28e-61	192
Msa1090390	AT3G02940.1	67.969	128	41	0	26	153	1	128	2.95e-61	194
Msa1090390	AT3G02940.3	67.969	128	41	0	26	153	1	128	2.95e-61	194

Showing 1 to 10 of 214 entries

Previous1 2 3 4 5…22Next

Find 39 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACCTTATCACAACA+TGG	0.641918	7_3:-4758725	None:intergenic
AAACCACCTCTCTTAAGGTC+TGG	0.517152	7_3:-4759000	None:intergenic
AAATATTTACCAGCAAGTTT+AGG	0.340530	7_3:-4758833	None:intergenic
AAATGTGGAGATTAAATCCT+TGG	0.423182	7_3:+4759840	Msa1090390:CDS
AACAATGAATCCCATTATTA+AGG	0.275432	7_3:-4758799	None:intergenic
AAGAACCAAATATTCCAAGA+GGG	0.665540	7_3:+4759809	Msa1090390:CDS
AAGAAGAAGCTGAAGTTACT+TGG	0.371698	7_3:+4759712	Msa1090390:CDS
AAGACAACCATGTTGTGATA+AGG	0.590627	7_3:+4758718	Msa1090390:CDS
AAGAGGGTCTAAAGAAAATG+TGG	0.576348	7_3:+4759825	Msa1090390:CDS
ACAATGAAATTAAGAATCAT+TGG	0.430588	7_3:+4759677	Msa1090390:CDS

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAGGTAAAGACTTAAG+AGG	+	chr7_3:4758680-4758699	Msa1090390:CDS	30.0%
CTTAAGAGGTTCAAAGAAAA+TGG	+	chr7_3:4758694-4758713	Msa1090390:CDS	30.0%
GACTATTGTGAATAACTTAG+AGG	-	chr7_3:4759135-4759154	None:intergenic	30.0%
CCTCTCAAATTGTAATGTTA+CGG	+	chr7_3:4759472-4759491	Msa1090390:intron	30.0%
AAGAACCAAATATTCCAAGA+GGG	+	chr7_3:4759809-4759828	Msa1090390:CDS	30.0%
AAATGTGGAGATTAAATCCT+TGG	+	chr7_3:4759840-4759859	Msa1090390:CDS	30.0%
ATTAAATCCTTGGAAAGTGA+TGG	+	chr7_3:4759850-4759869	Msa1090390:CDS	30.0%
AAGAAATGACAAAAACGGAA+TGG	+	chr7_3:4759878-4759897	Msa1090390:CDS	30.0%
ATGGAAAAGAGAAGAAAACA+AGG	+	chr7_3:4759897-4759916	Msa1090390:CDS	30.0%
TTCAAAGGTAAAGACTTAAG+AGG	+	chr7_3:4758680-4758699	Msa1090390:CDS	30.0%

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	4758638	4759927	4758638	ID=Msa1090390;Name=Msa1090390
chr7_3	mRNA	4758638	4759927	4758638	ID=Msa1090390-mRNA-1;Parent=Msa1090390;Name=Msa1090390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|1\|0.33\|1\|1\|1\|3\|0\|208
chr7_3	exon	4758638	4758845	4758638	ID=Msa1090390-mRNA-1:exon:1616;Parent=Msa1090390-mRNA-1
chr7_3	exon	4758947	4759076	4758947	ID=Msa1090390-mRNA-1:exon:1617;Parent=Msa1090390-mRNA-1
chr7_3	exon	4759639	4759927	4759639	ID=Msa1090390-mRNA-1:exon:1618;Parent=Msa1090390-mRNA-1
chr7_3	CDS	4758638	4758845	4758638	ID=Msa1090390-mRNA-1:cds;Parent=Msa1090390-mRNA-1
chr7_3	CDS	4758947	4759076	4758947	ID=Msa1090390-mRNA-1:cds;Parent=Msa1090390-mRNA-1
chr7_3	CDS	4759639	4759927	4759639	ID=Msa1090390-mRNA-1:cds;Parent=Msa1090390-mRNA-1

Gene Sequence

>Msa1090390

ATGTCATCACACTTGGTAACTCTTACGTGGTATCTTGATATTTTCAAAGGTAAAGACTTAAGAGGTTCAAAGAAAATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAAGAAGATCACAAGCTTGTGAATTTTATCCTTAATAATGGGATTCATTGTTGGAGAATGGTTCCTAAACTTGCTGGTCTTCTAAGATGTGGAAAGAGTTGTAGACTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATGCCCGTCTTGGTAACAGGTGGTCAAAGATTGCTTCACATTTTCCTGGAAGAACAGACAATGAAATTAAGAATCATTGGAACACAAAAATCAAGAAGAAGCTGAAGTTACTTGGATTAGACCCTGTGAACCACAAGCCAATTGAGCAAAAGCAACAAACCCTTGATGATGATAAAAATATTATTAACCAAGAACCAAATATTCCAAGAGGGTCTAAAGAAAATGTGGAGATTAAATCCTTGGAAAGTGATGGCACAAAAGAAATGACAAAAACGGAATGGAAAAGAGAAGAAAACAAGGTGACTTGA

Protein sequence

>Msa1090390

MSSHLVTLTWYLDIFKGKDLRGSKKMGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTKIKKKLKLLGLDPVNHKPIEQKQQTLDDDKNIINQEPNIPRGSKENVEIKSLESDGTKEMTKTEWKREENKVT*