AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1090390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090390 MtrunA17_Chr7g0228891 93.443 183 12 0 26 208 1 183 1.63e-125 355
Msa1090390 MtrunA17_Chr5g0434571 72.973 148 37 1 26 170 37 184 2.78e-74 228
Msa1090390 MtrunA17_Chr3g0110351 63.784 185 62 2 26 208 1 182 1.53e-73 224
Msa1090390 MtrunA17_Chr4g0057031 74.242 132 34 0 26 157 1 132 8.49e-70 214
Msa1090390 MtrunA17_Chr4g0039971 58.857 175 61 3 26 193 2 172 1.28e-62 198
Msa1090390 MtrunA17_Chr8g0349261 68.889 135 40 2 26 158 1 135 2.04e-62 196
Msa1090390 MtrunA17_Chr7g0217741 61.806 144 55 0 26 169 1 144 1.63e-61 194
Msa1090390 MtrunA17_Chr6g0453471 67.969 128 41 0 26 153 1 128 3.72e-61 194
Msa1090390 MtrunA17_Chr1g0193371 55.952 168 71 2 26 193 1 165 6.73e-61 194
Msa1090390 MtrunA17_Chr3g0115821 66.406 128 43 0 26 153 1 128 3.70e-60 191
Msa1090390 MtrunA17_Chr4g0037141 52.601 173 75 1 26 198 1 166 5.69e-60 189
Msa1090390 MtrunA17_Chr4g0042671 66.406 128 43 0 26 153 1 128 6.22e-59 190
Msa1090390 MtrunA17_Chr4g0048511 66.667 129 42 1 26 153 1 129 1.07e-58 188
Msa1090390 MtrunA17_Chr3g0103281 62.595 131 49 0 26 156 1 131 2.93e-58 186
Msa1090390 MtrunA17_Chr2g0281071 65.891 129 43 1 26 153 1 129 3.24e-58 186
Msa1090390 MtrunA17_Chr5g0410961 65.625 128 44 0 26 153 1 128 3.57e-58 186
Msa1090390 MtrunA17_Chr2g0323411 66.406 128 43 0 26 153 1 128 6.61e-58 185
Msa1090390 MtrunA17_Chr3g0131121 65.116 129 45 0 26 154 1 129 8.89e-58 184
Msa1090390 MtrunA17_Chr4g0058631 49.727 183 83 1 26 208 1 174 2.05e-57 185
Msa1090390 MtrunA17_Chr7g0270891 51.412 177 86 0 26 202 1 177 2.05e-57 185
Msa1090390 MtrunA17_Chr8g0385321 62.308 130 49 0 26 155 1 130 6.71e-57 182
Msa1090390 MtrunA17_Chr6g0452271 57.639 144 61 0 26 169 1 144 2.29e-56 181
Msa1090390 MtrunA17_Chr3g0117091 61.765 136 52 0 26 161 1 136 3.04e-56 181
Msa1090390 MtrunA17_Chr1g0211161 64.567 127 45 0 28 154 4 130 3.91e-56 177
Msa1090390 MtrunA17_Chr1g0193801 58.865 141 58 0 26 166 1 141 8.45e-56 181
Msa1090390 MtrunA17_Chr1g0187761 68.966 116 36 0 26 141 1 116 1.73e-55 177
Msa1090390 MtrunA17_Chr7g0271241 57.576 165 63 2 26 190 1 158 2.43e-55 180
Msa1090390 MtrunA17_Chr5g0395281 57.718 149 63 0 26 174 1 149 4.04e-55 177
Msa1090390 MtrunA17_Chr1g0203411 56.081 148 56 1 26 173 1 139 4.27e-55 177
Msa1090390 MtrunA17_Chr7g0261281 61.314 137 53 0 26 162 1 137 2.85e-54 174
Msa1090390 MtrunA17_Chr5g0435101 60.800 125 49 0 28 152 2 126 1.46e-53 170
Msa1090390 MtrunA17_Chr3g0121241 64.800 125 44 0 30 154 35 159 2.50e-53 172
Msa1090390 MtrunA17_Chr1g0194951 68.103 116 37 0 26 141 1 116 7.98e-53 173
Msa1090390 MtrunA17_Chr8g0342521 54.140 157 64 1 26 182 1 149 1.62e-52 172
Msa1090390 MtrunA17_Chr1g0167691 65.517 116 40 0 26 141 1 116 2.99e-52 168
Msa1090390 MtrunA17_Chr7g0275911 65.812 117 40 0 26 142 1 117 3.02e-52 168
Msa1090390 MtrunA17_Chr2g0330041 67.241 116 38 0 26 141 1 116 3.60e-52 172
Msa1090390 MtrunA17_Chr7g0274581 57.600 125 53 0 26 150 1 125 3.21e-51 164
Msa1090390 MtrunA17_Chr2g0311221 70.642 109 32 0 27 135 4 112 3.23e-51 168
Msa1090390 MtrunA17_Chr4g0068061 63.025 119 44 0 26 144 1 119 6.18e-51 167
Msa1090390 MtrunA17_Chr1g0167661 60.938 128 46 1 26 153 1 124 2.33e-50 164
Msa1090390 MtrunA17_Chr8g0346561 63.248 117 43 0 26 142 1 117 2.74e-50 165
Msa1090390 MtrunA17_Chr2g0309911 62.698 126 46 1 26 151 1 125 4.42e-50 164
Msa1090390 MtrunA17_Chr1g0151941 50.617 162 70 4 26 180 1 159 5.72e-50 162
Msa1090390 MtrunA17_Chr7g0217221 64.957 117 41 0 26 142 1 117 7.89e-50 162
Msa1090390 MtrunA17_Chr2g0323351 62.069 116 44 0 26 141 1 116 9.80e-50 162
Msa1090390 MtrunA17_Chr4g0044421 61.600 125 47 1 28 151 2 126 1.41e-49 159
Msa1090390 MtrunA17_Chr8g0342541 63.793 116 42 0 26 141 1 116 1.45e-49 164
Msa1090390 MtrunA17_Chr4g0022931 53.285 137 60 2 26 158 1 137 1.50e-49 162
Msa1090390 MtrunA17_Chr7g0254411 61.417 127 47 1 26 150 1 127 3.10e-49 163
Msa1090390 MtrunA17_Chr8g0387421 62.393 117 44 0 26 142 1 117 4.25e-49 162
Msa1090390 MtrunA17_Chr4g0022901 60.345 116 45 1 26 140 1 116 4.42e-49 161
Msa1090390 MtrunA17_Chr4g0060721 61.207 116 45 0 26 141 2 117 7.54e-49 162
Msa1090390 MtrunA17_Chr4g0022911 58.621 116 47 1 26 140 1 116 7.58e-49 160
Msa1090390 MtrunA17_Chr4g0032401 58.462 130 51 1 37 166 17 143 1.03e-48 162
Msa1090390 MtrunA17_Chr3g0092401 61.538 117 45 0 26 142 2 118 1.53e-48 160
Msa1090390 MtrunA17_Chr4g0070641 63.866 119 43 0 26 144 1 119 2.43e-48 155
Msa1090390 MtrunA17_Chr7g0269831 59.848 132 52 1 26 156 1 132 3.87e-48 160
Msa1090390 MtrunA17_Chr4g0070611 63.866 119 43 0 26 144 1 119 6.15e-48 159
Msa1090390 MtrunA17_Chr5g0417821 59.664 119 48 0 35 153 5 123 3.91e-47 156
Msa1090390 MtrunA17_Chr5g0400821 44.809 183 84 4 26 207 1 167 5.03e-47 157
Msa1090390 MtrunA17_Chr8g0342481 62.393 117 43 1 26 141 1 117 6.66e-47 159
Msa1090390 MtrunA17_Chr5g0397231 62.727 110 41 0 26 135 1 110 1.84e-46 156
Msa1090390 MtrunA17_Chr6g0453211 62.727 110 41 0 26 135 1 110 3.90e-46 154
Msa1090390 MtrunA17_Chr2g0328771 56.489 131 56 1 37 167 20 149 7.05e-46 154
Msa1090390 MtrunA17_Chr3g0135311 59.829 117 46 1 26 141 1 117 8.61e-46 154
Msa1090390 MtrunA17_Chr1g0152011 51.678 149 66 3 26 173 1 144 1.16e-45 154
Msa1090390 MtrunA17_Chr4g0028311 54.688 128 57 1 26 152 1 128 2.82e-45 152
Msa1090390 MtrunA17_Chr7g0264641 57.265 117 49 1 26 141 1 117 9.69e-44 147
Msa1090390 MtrunA17_Chr7g0228231 61.321 106 41 0 37 142 14 119 5.80e-43 143
Msa1090390 MtrunA17_Chr1g0203441 59.829 117 46 1 26 141 1 117 6.36e-43 145
Msa1090390 MtrunA17_Chr4g0022891 57.522 113 48 0 26 138 1 113 7.78e-43 144
Msa1090390 MtrunA17_Chr3g0088461 60.909 110 43 0 33 142 18 127 8.71e-43 146
Msa1090390 MtrunA17_Chr4g0072751 58.559 111 45 1 26 135 1 111 1.79e-42 146
Msa1090390 MtrunA17_Chr6g0450101 56.303 119 50 1 26 142 1 119 2.07e-42 142
Msa1090390 MtrunA17_Chr8g0354661 59.055 127 48 3 35 161 35 157 2.76e-42 149
Msa1090390 MtrunA17_Chr6g0487491 56.452 124 45 2 26 140 1 124 2.85e-42 143
Msa1090390 MtrunA17_Chr1g0209661 53.782 119 55 0 37 155 27 145 3.48e-42 144
Msa1090390 MtrunA17_Chr4g0022881 55.263 114 51 0 26 139 1 114 5.00e-42 141
Msa1090390 MtrunA17_Chr4g0054391 59.091 110 44 1 26 134 1 110 8.25e-42 142
Msa1090390 MtrunA17_Chr7g0247131 72.414 87 24 0 68 154 9 95 9.13e-42 142
Msa1090390 MtrunA17_Chr1g0194291 52.174 138 63 2 15 152 1 135 2.41e-41 140
Msa1090390 MtrunA17_Chr2g0327351 57.658 111 46 1 26 135 1 111 3.40e-41 142
Msa1090390 MtrunA17_Chr6g0470971 57.265 117 48 1 26 140 1 117 5.23e-41 140
Msa1090390 MtrunA17_Chr2g0293911 53.488 129 59 1 33 161 20 147 4.66e-40 139
Msa1090390 MtrunA17_Chr4g0068921 52.713 129 60 1 33 161 20 147 2.83e-39 133
Msa1090390 MtrunA17_Chr3g0080861 57.407 108 46 0 35 142 35 142 2.86e-39 140
Msa1090390 MtrunA17_Chr1g0168661 60.952 105 41 0 38 142 22 126 3.99e-39 135
Msa1090390 MtrunA17_Chr1g0186061 60.952 105 41 0 38 142 21 125 4.47e-39 135
Msa1090390 MtrunA17_Chr1g0194301 53.043 115 54 0 33 147 29 143 1.99e-38 134
Msa1090390 MtrunA17_Chr4g0055981 58.879 107 44 0 34 140 52 158 6.64e-38 131
Msa1090390 MtrunA17_Chr3g0099131 54.717 106 48 0 35 140 39 144 2.95e-37 135
Msa1090390 MtrunA17_Chr2g0322521 57.009 107 46 0 34 140 26 132 1.87e-36 131
Msa1090390 MtrunA17_Chr2g0294811 65.909 88 30 0 26 113 1 88 2.64e-36 123
Msa1090390 MtrunA17_Chr4g0042611 64.773 88 31 0 26 113 1 88 3.69e-36 122
Msa1090390 MtrunA17_Chr2g0327821 53.774 106 49 0 37 142 6 111 4.96e-36 126
Msa1090390 MtrunA17_Chr1g0154031 56.731 104 45 0 37 140 76 179 7.13e-36 130
Msa1090390 MtrunA17_Chr1g0180391 48.760 121 62 0 23 143 5 125 1.38e-35 125
Msa1090390 MtrunA17_Chr7g0240821 49.275 138 63 1 41 178 5 135 1.54e-35 125
Msa1090390 MtrunA17_Chr8g0343831 55.660 106 47 0 37 142 8 113 3.12e-35 125
Msa1090390 MtrunA17_Chr4g0030881 52.727 110 45 1 38 140 8 117 6.91e-35 124
Msa1090390 MtrunA17_Chr5g0434831 53.774 106 49 0 36 141 6 111 2.60e-34 120
Msa1090390 MtrunA17_Chr8g0342511 62.069 87 33 0 26 112 1 87 3.33e-34 117
Msa1090390 MtrunA17_Chr5g0440781 44.138 145 70 5 38 176 13 152 4.90e-34 120
Msa1090390 MtrunA17_Chr8g0342531 58.333 96 40 0 26 121 1 96 5.70e-34 119
Msa1090390 MtrunA17_Chr5g0434931 52.830 106 50 0 36 141 34 139 1.92e-33 120
Msa1090390 MtrunA17_Chr7g0220341 52.252 111 51 1 33 141 21 131 1.95e-33 120
Msa1090390 MtrunA17_Chr5g0434911 50.909 110 54 0 32 141 16 125 2.26e-33 120
Msa1090390 MtrunA17_Chr5g0440761 44.138 145 70 5 38 176 13 152 6.22e-33 119
Msa1090390 MtrunA17_Chr5g0441141 44.138 145 70 5 38 176 13 152 1.01e-32 119
Msa1090390 MtrunA17_Chr2g0323321 56.383 94 40 1 26 119 1 93 2.12e-32 113
Msa1090390 MtrunA17_Chr1g0192411 49.550 111 56 0 33 143 8 118 2.45e-32 120
Msa1090390 MtrunA17_Chr7g0228991 49.206 126 59 1 16 141 13 133 3.74e-32 117
Msa1090390 MtrunA17_Chr5g0434841 52.830 106 50 0 36 141 19 124 4.19e-32 118
Msa1090390 MtrunA17_Chr8g0342461 57.000 100 40 2 26 122 1 100 5.49e-32 113
Msa1090390 MtrunA17_Chr8g0342471 57.000 100 40 2 26 122 1 100 6.12e-32 113
Msa1090390 MtrunA17_Chr8g0360111 52.941 102 48 0 36 137 24 125 1.32e-31 115
Msa1090390 MtrunA17_Chr3g0093811 56.180 89 39 0 68 156 13 101 1.05e-29 110
Msa1090390 MtrunA17_Chr5g0441131 46.552 116 60 2 35 149 7 121 2.17e-29 107
Msa1090390 MtrunA17_Chr5g0395221 57.955 88 37 0 26 113 1 88 2.33e-29 104
Msa1090390 MtrunA17_Chr5g0401731 43.333 120 65 2 39 157 15 132 2.43e-28 108
Msa1090390 MtrunA17_Chr6g0454921 45.536 112 58 2 39 149 15 124 2.59e-28 105
Msa1090390 MtrunA17_Chr8g0334881 46.018 113 60 1 33 144 6 118 6.87e-28 107
Msa1090390 MtrunA17_Chr3g0099141 50.575 87 43 0 33 119 36 122 2.19e-27 101
Msa1090390 MtrunA17_Chr6g0480581 37.349 166 89 5 39 191 4 167 2.88e-27 103
Msa1090390 MtrunA17_Chr3g0133601 41.860 129 70 3 39 164 37 163 1.07e-26 102
Msa1090390 MtrunA17_Chr4g0013361 45.192 104 56 1 37 139 10 113 6.45e-26 101
Msa1090390 MtrunA17_Chr4g0008551 44.737 114 56 3 39 151 38 145 1.63e-25 101
Msa1090390 MtrunA17_Chr4g0053431 42.241 116 65 2 39 153 5 119 1.86e-25 99.8
Msa1090390 MtrunA17_Chr7g0238631 48.148 108 53 2 37 143 111 216 2.07e-25 102
Msa1090390 MtrunA17_Chr5g0429661 46.667 105 53 2 37 140 120 222 4.99e-25 100
Msa1090390 MtrunA17_Chr5g0417621 46.667 105 53 2 39 142 134 236 6.33e-24 98.2
Msa1090390 MtrunA17_Chr4g0058991 44.037 109 58 2 34 141 204 310 7.87e-24 98.2
Msa1090390 MtrunA17_Chr3g0117511 34.507 142 88 3 3 141 145 284 7.88e-24 97.8
Msa1090390 MtrunA17_Chr5g0425591 48.235 85 43 1 35 118 7 91 8.68e-24 90.5
Msa1090390 MtrunA17_Chr3g0139671 44.340 106 56 2 37 141 83 186 1.74e-23 97.8
Msa1090390 MtrunA17_Chr4g0042501 44.340 106 56 2 38 142 104 207 3.04e-23 96.3
Msa1090390 MtrunA17_Chr6g0453751 47.826 92 39 2 36 118 19 110 3.11e-23 90.5
Msa1090390 MtrunA17_Chr7g0229101 57.746 71 30 0 68 138 3 73 3.76e-23 92.4
Msa1090390 MtrunA17_Chr5g0434901 59.091 66 27 0 73 138 9 74 3.84e-23 89.7
Msa1090390 MtrunA17_Chr7g0229131 52.632 76 36 0 68 143 3 78 7.36e-23 90.5
Msa1090390 MtrunA17_Chr5g0437321 45.283 106 52 3 33 137 16 116 7.51e-23 93.2
Msa1090390 MtrunA17_Chr6g0460661 42.453 106 57 3 42 145 19 122 1.80e-22 89.4
Msa1090390 MtrunA17_Chr1g0157731 42.453 106 58 2 37 141 89 192 7.17e-22 93.2
Msa1090390 MtrunA17_Chr6g0460671 42.991 107 58 2 39 144 99 203 2.43e-21 90.1
Msa1090390 MtrunA17_Chr3g0125801 44.954 109 57 2 33 140 10 116 3.00e-20 86.3
Msa1090390 MtrunA17_Chr7g0254261 40.336 119 63 3 23 140 78 189 1.54e-19 85.1
Msa1090390 MtrunA17_Chr7g0228531 39.623 106 62 2 35 140 216 319 2.46e-19 85.1
Msa1090390 MtrunA17_Chr5g0397841 43.434 99 53 2 37 134 108 204 8.83e-19 84.0
Msa1090390 MtrunA17_Chr1g0177901 43.023 86 48 1 50 135 5 89 1.80e-17 77.4
Msa1090390 MtrunA17_Chr7g0228401 43.678 87 46 2 50 135 290 374 3.39e-17 79.3
Msa1090390 MtrunA17_Chr7g0233061 38.318 107 56 4 39 142 180 279 1.29e-15 74.3
Msa1090390 MtrunA17_Chr7g0238651 36.800 125 71 3 39 155 7 131 1.47e-15 73.9
Msa1090390 MtrunA17_Chr7g0228481 36.634 101 62 2 35 135 216 314 1.51e-15 74.3
Msa1090390 MtrunA17_Chr5g0395231 60.784 51 20 0 103 153 5 55 3.18e-15 72.0
Msa1090390 MtrunA17_Chr7g0247141 60.417 48 18 1 26 72 1 48 7.00e-14 63.9
Msa1090390 MtrunA17_Chr5g0416341 36.792 106 64 2 42 146 29 132 1.25e-13 68.9
Msa1090390 MtrunA17_Chr8g0362231 34.677 124 80 1 19 142 2 124 1.54e-13 68.6
Msa1090390 MtrunA17_Chr1g0193901 44.048 84 45 2 37 118 11 94 3.01e-12 60.8
Msa1090390 MtrunA17_Chr1g0193891 44.048 84 45 2 37 118 11 94 3.01e-12 60.8
Msa1090390 MtrunA17_Chr1g0193871 44.048 84 45 2 37 118 11 94 3.01e-12 60.8
Msa1090390 MtrunA17_Chr1g0193881 44.048 84 45 2 37 118 11 94 3.01e-12 60.8
Msa1090390 MtrunA17_Chr5g0434871 56.818 44 19 0 98 141 1 44 8.75e-12 58.5
Msa1090390 MtrunA17_Chr3g0145551 43.103 58 33 0 117 174 2 59 3.05e-11 57.8
Msa1090390 MtrunA17_Chr4g0042621 62.500 40 15 0 114 153 15 54 4.39e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090390 AT5G14340.1 70.286 175 47 2 26 198 13 184 1.50e-85 254
Msa1090390 AT5G16600.1 75.556 135 33 0 26 160 1 135 8.96e-75 229
Msa1090390 AT1G66230.1 76.744 129 30 0 26 154 1 129 1.44e-72 221
Msa1090390 AT4G22680.1 69.014 142 44 0 26 167 1 142 2.47e-70 215
Msa1090390 AT4G12350.1 59.064 171 65 2 26 196 1 166 2.64e-66 206
Msa1090390 AT3G61250.1 68.992 129 40 0 26 154 1 129 6.45e-62 195
Msa1090390 AT3G02940.2 67.969 128 41 0 26 153 1 128 1.47e-61 194
Msa1090390 AT5G62320.1 56.886 167 63 2 27 186 3 167 2.28e-61 192
Msa1090390 AT3G02940.1 67.969 128 41 0 26 153 1 128 2.95e-61 194
Msa1090390 AT3G02940.3 67.969 128 41 0 26 153 1 128 2.95e-61 194
Msa1090390 AT5G15310.4 67.969 128 41 0 26 153 1 128 5.98e-61 191
Msa1090390 AT5G15310.1 67.969 128 41 0 26 153 1 128 7.78e-61 193
Msa1090390 AT5G15310.2 67.969 128 41 0 26 153 1 128 8.20e-61 192
Msa1090390 AT3G01140.2 64.748 139 46 1 26 164 1 136 2.55e-60 192
Msa1090390 AT4G28110.1 65.625 128 44 0 26 153 1 128 4.01e-60 190
Msa1090390 AT1G09540.1 65.000 140 49 0 26 165 1 140 5.98e-60 192
Msa1090390 AT5G16770.4 66.406 128 43 0 26 153 1 128 8.26e-60 190
Msa1090390 AT5G16770.3 66.406 128 43 0 26 153 1 128 8.26e-60 190
Msa1090390 AT4G38620.1 61.594 138 53 0 26 163 1 138 1.03e-59 189
Msa1090390 AT5G16770.1 66.406 128 43 0 26 153 1 128 1.97e-59 189
Msa1090390 AT5G16770.2 66.406 128 43 0 26 153 1 128 1.97e-59 189
Msa1090390 AT4G21440.1 66.406 128 43 0 26 153 1 128 2.66e-59 190
Msa1090390 AT5G26660.1 57.317 164 68 2 26 187 1 164 5.89e-59 189
Msa1090390 AT1G57560.2 55.556 162 67 1 26 182 1 162 2.27e-58 185
Msa1090390 AT4G17785.2 65.116 129 44 1 26 153 1 129 2.68e-58 187
Msa1090390 AT4G09460.1 63.158 133 49 0 26 158 1 133 3.11e-58 183
Msa1090390 AT4G17785.1 65.116 129 44 1 26 153 1 129 3.53e-58 187
Msa1090390 AT5G65230.1 64.844 128 45 0 26 153 1 128 5.97e-58 185
Msa1090390 AT3G23250.1 61.538 143 53 1 26 168 1 141 7.52e-58 184
Msa1090390 AT4G34990.1 57.143 147 63 0 26 172 1 147 7.68e-58 184
Msa1090390 AT4G01680.3 62.319 138 52 0 26 163 1 138 7.74e-58 182
Msa1090390 AT1G34670.1 64.844 128 45 0 26 153 1 128 9.10e-58 186
Msa1090390 AT2G16720.1 61.654 133 51 0 26 158 1 133 1.53e-57 182
Msa1090390 AT5G56110.1 62.595 131 49 0 26 156 1 131 3.37e-57 183
Msa1090390 AT3G01140.1 64.444 135 45 1 30 164 48 179 3.77e-57 185
Msa1090390 AT1G57560.1 60.140 143 55 1 26 166 1 143 4.61e-57 183
Msa1090390 AT3G13540.1 57.317 164 61 2 30 192 16 171 4.69e-57 181
Msa1090390 AT4G01680.1 62.319 138 52 0 26 163 1 138 8.05e-57 183
Msa1090390 AT4G05100.1 64.341 129 45 1 26 153 1 129 8.82e-57 182
Msa1090390 AT5G10280.1 63.281 128 47 0 26 153 1 128 1.16e-56 182
Msa1090390 AT1G06180.1 69.828 116 35 0 26 141 1 116 1.01e-55 177
Msa1090390 AT1G22640.1 61.364 132 51 0 26 157 1 132 1.10e-55 177
Msa1090390 AT1G35515.1 60.000 135 54 0 26 160 1 135 1.50e-55 176
Msa1090390 AT1G16490.1 68.696 115 36 0 27 141 4 118 1.48e-54 175
Msa1090390 AT2G31180.1 58.741 143 59 0 26 168 1 143 2.86e-54 174
Msa1090390 AT3G12820.1 71.053 114 33 0 28 141 5 118 4.14e-54 173
Msa1090390 AT5G61420.2 52.147 163 73 2 26 187 1 159 6.27e-54 176
Msa1090390 AT5G60890.1 57.778 135 57 0 26 160 1 135 1.45e-53 173
Msa1090390 AT4G01680.2 57.333 150 52 1 26 163 1 150 3.02e-53 174
Msa1090390 AT1G79180.1 68.696 115 36 0 27 141 4 118 3.10e-53 172
Msa1090390 AT1G56160.1 68.696 115 36 0 27 141 4 118 3.56e-53 172
Msa1090390 AT5G07690.1 61.240 129 50 0 26 154 1 129 1.57e-52 172
Msa1090390 AT5G54230.1 63.281 128 47 0 26 153 1 128 4.52e-52 170
Msa1090390 AT5G49330.1 66.379 116 39 0 26 141 1 116 9.84e-52 170
Msa1090390 AT3G28470.1 59.542 131 53 0 26 156 1 131 1.61e-51 169
Msa1090390 AT2G47460.1 66.379 116 39 0 26 141 1 116 5.43e-51 169
Msa1090390 AT1G18570.1 58.219 146 57 2 26 167 1 146 5.90e-51 168
Msa1090390 AT1G74080.1 61.240 129 50 0 26 154 1 129 8.27e-51 167
Msa1090390 AT5G07700.1 58.915 129 53 0 26 154 1 129 1.05e-50 167
Msa1090390 AT5G07700.2 58.915 129 53 0 26 154 1 129 1.05e-50 167
Msa1090390 AT3G47600.1 52.597 154 71 1 26 177 1 154 1.30e-50 167
Msa1090390 AT3G13890.2 65.517 116 40 0 26 141 1 116 1.89e-50 167
Msa1090390 AT3G62610.1 64.655 116 41 0 26 141 1 116 3.13e-50 166
Msa1090390 AT1G74430.1 56.204 137 60 0 26 162 1 137 3.25e-50 164
Msa1090390 AT1G08810.1 64.655 116 41 0 26 141 1 116 3.57e-50 164
Msa1090390 AT5G62470.2 64.103 117 42 0 26 142 1 117 6.51e-50 166
Msa1090390 AT3G12720.1 62.205 127 47 1 25 151 11 136 7.54e-50 164
Msa1090390 AT1G74650.1 62.185 119 45 0 26 144 1 119 3.19e-49 163
Msa1090390 AT1G18710.1 57.364 129 55 0 26 154 1 129 5.44e-49 160
Msa1090390 AT3G28910.1 62.295 122 46 0 26 147 1 122 7.51e-49 162
Msa1090390 AT5G62470.1 64.103 117 41 1 26 142 1 116 1.70e-48 162
Msa1090390 AT1G63910.1 57.812 128 54 0 26 153 1 128 5.13e-48 161
Msa1090390 AT3G01530.1 61.207 116 45 0 37 152 25 140 7.45e-48 156
Msa1090390 AT3G13890.1 60.800 125 40 1 26 141 1 125 3.42e-47 159
Msa1090390 AT2G36890.2 56.589 129 55 1 24 151 40 168 2.38e-46 156
Msa1090390 AT3G49690.1 59.829 117 46 1 26 141 1 117 2.76e-46 155
Msa1090390 AT1G79180.2 53.378 148 36 1 27 141 4 151 2.90e-46 155
Msa1090390 AT5G12870.1 66.981 106 35 0 37 142 18 123 3.17e-46 154
Msa1090390 AT2G36890.1 57.480 127 53 1 26 151 1 127 4.06e-46 154
Msa1090390 AT5G65790.1 58.974 117 47 1 26 141 1 117 5.10e-46 156
Msa1090390 AT5G23000.1 61.017 118 43 2 26 141 1 117 4.97e-45 152
Msa1090390 AT4G37780.1 58.120 117 48 1 26 141 1 117 9.16e-45 151
Msa1090390 AT5G57620.1 58.974 117 47 1 26 141 1 117 1.06e-44 152
Msa1090390 AT3G08500.1 62.727 110 41 0 33 142 26 135 1.33e-44 152
Msa1090390 AT5G40350.1 60.952 105 41 0 37 141 17 121 2.09e-42 142
Msa1090390 AT3G27810.1 60.377 106 42 0 37 142 20 125 2.51e-42 142
Msa1090390 AT1G68320.1 57.658 111 47 0 37 147 19 129 4.44e-42 144
Msa1090390 AT1G25340.1 53.390 118 55 0 38 155 19 136 4.68e-42 143
Msa1090390 AT1G48000.1 56.198 121 52 1 35 155 30 149 1.05e-41 141
Msa1090390 AT3G06490.1 55.039 129 57 1 33 161 15 142 4.86e-41 142
Msa1090390 AT3G27920.1 58.654 104 43 0 38 141 15 118 1.23e-40 138
Msa1090390 AT5G52260.1 59.483 116 44 1 25 140 3 115 2.33e-40 139
Msa1090390 AT5G26660.2 58.333 120 48 2 70 187 14 133 6.75e-40 139
Msa1090390 AT5G14750.1 58.491 106 44 0 38 143 17 122 8.09e-40 135
Msa1090390 AT2G32460.1 53.488 129 58 2 36 164 17 143 8.30e-40 142
Msa1090390 AT5G06100.1 54.630 108 49 0 33 140 28 135 9.57e-40 141
Msa1090390 AT2G32460.2 53.488 129 58 2 36 164 5 131 1.01e-39 142
Msa1090390 AT5G55020.1 59.259 108 44 0 35 142 24 131 2.14e-39 141
Msa1090390 AT5G06100.5 54.630 108 49 0 33 140 28 135 2.76e-39 141
Msa1090390 AT5G06100.2 54.630 108 49 0 33 140 28 135 2.76e-39 141
Msa1090390 AT5G06100.3 54.630 108 49 0 33 140 28 135 2.76e-39 141
Msa1090390 AT5G06100.4 54.630 108 49 0 33 140 28 135 2.76e-39 141
Msa1090390 AT5G40330.1 57.547 106 45 0 38 143 13 118 4.74e-39 134
Msa1090390 AT3G24310.1 60.748 107 42 0 36 142 17 123 5.47e-39 135
Msa1090390 AT4G13480.1 61.905 105 40 0 38 142 7 111 1.05e-38 134
Msa1090390 AT3G30210.1 51.969 127 61 0 36 162 26 152 1.37e-38 134
Msa1090390 AT3G11440.2 54.808 104 47 0 37 140 41 144 2.74e-38 137
Msa1090390 AT2G26960.1 55.752 113 49 1 34 146 17 128 3.14e-38 137
Msa1090390 AT4G26930.1 46.575 146 70 2 35 179 17 155 3.51e-38 136
Msa1090390 AT2G47190.1 54.955 111 50 0 37 147 20 130 4.72e-38 133
Msa1090390 AT3G11440.3 54.808 104 47 0 37 140 41 144 8.02e-38 137
Msa1090390 AT3G11440.4 54.808 104 47 0 37 140 41 144 8.02e-38 137
Msa1090390 AT3G11440.1 54.808 104 47 0 37 140 41 144 8.02e-38 137
Msa1090390 AT1G25340.2 50.847 118 53 1 38 155 19 131 9.18e-38 132
Msa1090390 AT5G49620.1 47.619 147 75 2 16 161 4 149 9.42e-38 133
Msa1090390 AT1G25340.3 50.847 118 53 1 38 155 19 131 1.68e-37 132
Msa1090390 AT4G25560.1 59.223 103 42 0 38 140 11 113 1.74e-37 132
Msa1090390 AT5G59780.3 57.547 106 45 0 37 142 8 113 5.97e-37 129
Msa1090390 AT5G35550.1 59.048 105 43 0 37 141 14 118 7.87e-37 129
Msa1090390 AT3G46130.1 57.009 107 46 0 36 142 8 114 9.97e-37 129
Msa1090390 AT3G48920.1 53.774 106 49 0 38 143 19 124 1.05e-35 126
Msa1090390 AT5G49620.2 43.478 161 75 3 16 161 4 163 6.26e-34 123
Msa1090390 AT5G52600.1 46.923 130 60 1 34 154 9 138 7.60e-34 120
Msa1090390 AT3G53200.1 57.692 104 44 0 37 140 9 112 8.30e-34 121
Msa1090390 AT3G12820.2 77.143 70 16 0 72 141 1 70 6.98e-33 117
Msa1090390 AT5G14750.3 60.465 86 29 1 63 143 3 88 9.60e-32 114
Msa1090390 AT3G47600.2 43.571 140 73 2 40 177 13 148 3.57e-31 116
Msa1090390 AT1G66370.1 51.304 115 52 1 26 140 1 111 4.05e-31 114
Msa1090390 AT2G26950.1 49.167 120 57 3 42 161 21 136 5.63e-31 117
Msa1090390 AT1G66380.1 55.238 105 47 0 36 140 7 111 1.05e-30 110
Msa1090390 AT3G27810.2 67.123 73 24 0 70 142 4 76 6.72e-30 109
Msa1090390 AT5G40350.2 68.056 72 23 0 70 141 5 76 7.48e-30 108
Msa1090390 AT5G35550.2 55.789 95 39 1 50 141 27 121 3.75e-29 109
Msa1090390 AT1G56650.1 41.935 155 74 2 36 174 7 161 5.18e-29 108
Msa1090390 AT3G60460.1 44.954 109 59 1 37 144 11 119 1.21e-28 109
Msa1090390 AT1G66390.1 54.286 105 48 0 36 140 7 111 4.32e-28 106
Msa1090390 AT1G18960.1 44.828 116 61 2 39 154 10 122 4.02e-27 105
Msa1090390 AT3G46130.3 63.514 74 27 0 69 142 9 82 5.22e-27 103
Msa1090390 AT2G23290.1 49.515 103 49 2 39 140 13 113 6.45e-27 104
Msa1090390 AT3G09230.1 34.921 189 105 6 22 204 44 220 9.76e-27 105
Msa1090390 AT5G59780.2 64.384 73 26 0 70 142 20 92 1.04e-26 102
Msa1090390 AT1G22640.3 62.667 75 28 0 83 157 1 75 1.13e-26 101
Msa1090390 AT3G46130.4 64.384 73 26 0 70 142 20 92 1.44e-26 102
Msa1090390 AT5G58850.1 47.619 105 52 2 37 140 103 205 1.62e-26 105
Msa1090390 AT1G69560.1 39.437 142 76 3 34 174 102 234 3.35e-26 103
Msa1090390 AT1G69560.2 39.437 142 76 3 34 174 118 250 4.78e-26 103
Msa1090390 AT3G53200.2 66.197 71 24 0 70 140 9 79 1.09e-25 99.4
Msa1090390 AT4G37260.1 44.444 108 57 2 39 145 13 118 1.54e-25 101
Msa1090390 AT1G71030.2 55.844 77 34 0 76 152 5 81 3.87e-25 97.1
Msa1090390 AT1G71030.1 55.844 77 34 0 76 152 19 95 4.94e-25 97.4
Msa1090390 AT5G02320.3 45.872 109 56 2 37 144 65 171 6.27e-25 101
Msa1090390 AT5G02320.1 45.872 109 56 2 37 144 125 231 6.57e-25 102
Msa1090390 AT5G02320.2 45.872 109 56 2 37 144 125 231 6.57e-25 102
Msa1090390 AT1G17950.1 48.544 103 50 2 39 140 5 105 1.41e-24 97.4
Msa1090390 AT3G09370.2 45.045 111 58 2 37 146 133 241 1.84e-24 100
Msa1090390 AT3G09370.1 45.045 111 58 2 37 146 128 236 2.05e-24 100
Msa1090390 AT5G11050.1 36.691 139 76 3 39 176 105 232 2.53e-24 99.4
Msa1090390 AT3G09370.3 45.045 111 58 2 37 146 141 249 3.09e-24 99.8
Msa1090390 AT2G39880.1 37.255 153 68 3 39 165 50 200 3.57e-24 98.6
Msa1090390 AT1G26780.1 46.729 107 54 2 37 142 96 200 4.11e-24 96.7
Msa1090390 AT3G27785.1 46.296 108 55 2 34 140 184 289 6.97e-24 98.2
Msa1090390 AT1G26780.2 46.729 107 54 2 37 142 96 200 8.75e-24 97.4
Msa1090390 AT5G67300.1 43.689 103 55 2 39 140 6 106 9.55e-24 96.3
Msa1090390 AT3G55730.1 45.794 107 55 2 39 144 56 160 1.81e-23 97.1
Msa1090390 AT4G18770.1 42.202 109 60 2 34 141 212 318 3.20e-23 96.3
Msa1090390 AT3G50060.1 42.718 103 56 2 39 140 6 106 9.78e-23 93.6
Msa1090390 AT1G66380.3 58.904 73 30 0 68 140 6 78 1.79e-22 88.2
Msa1090390 AT1G73410.1 47.619 105 52 2 39 142 6 108 3.47e-22 90.9
Msa1090390 AT4G32730.1 41.509 106 59 2 37 141 85 188 3.91e-22 94.0
Msa1090390 AT4G32730.5 41.509 106 59 2 37 141 85 188 4.52e-22 94.0
Msa1090390 AT4G32730.4 41.509 106 59 2 37 141 85 188 4.52e-22 94.0
Msa1090390 AT4G32730.3 41.509 106 59 2 37 141 85 188 4.52e-22 94.0
Msa1090390 AT4G32730.2 41.509 106 59 2 37 141 85 188 4.52e-22 94.0
Msa1090390 AT1G73410.2 47.619 105 52 2 39 142 6 108 5.10e-22 89.7
Msa1090390 AT3G23250.2 66.667 60 20 0 83 142 1 60 6.59e-22 89.7
Msa1090390 AT5G11510.3 44.340 106 56 2 37 141 79 182 7.46e-22 93.2
Msa1090390 AT5G11510.1 44.340 106 56 2 37 141 79 182 7.46e-22 93.2
Msa1090390 AT5G11510.4 44.340 106 56 2 37 141 79 182 7.46e-22 93.2
Msa1090390 AT5G11510.2 44.340 106 56 2 37 141 79 182 9.69e-22 93.2
Msa1090390 AT5G11510.5 44.340 106 56 2 37 141 79 182 1.07e-21 92.8
Msa1090390 AT5G14750.4 63.934 61 22 0 83 143 1 61 1.14e-21 87.0
Msa1090390 AT5G14750.2 63.934 61 22 0 83 143 1 61 1.14e-21 87.0
Msa1090390 AT3G29020.1 33.813 139 87 3 38 175 64 198 1.56e-21 89.0
Msa1090390 AT3G29020.2 33.566 143 80 3 38 167 66 206 2.34e-21 89.7
Msa1090390 AT4G33450.1 40.164 122 64 4 21 140 5 119 2.45e-21 89.0
Msa1090390 AT5G17800.1 37.398 123 70 2 20 142 80 195 3.40e-21 89.7
Msa1090390 AT5G14340.2 54.545 88 35 2 113 198 10 94 2.73e-20 84.7
Msa1090390 AT5G40360.1 40.404 99 58 1 37 135 156 253 4.53e-20 87.0
Msa1090390 AT2G25230.1 40.777 103 58 2 34 135 21 121 4.07e-19 82.4
Msa1090390 AT1G66380.2 44.898 98 54 0 36 133 7 104 6.84e-19 79.0
Msa1090390 AT4G00540.2 41.441 111 59 3 36 142 100 208 2.34e-17 79.7
Msa1090390 AT5G39700.1 36.893 103 64 1 40 142 57 158 3.34e-17 76.6
Msa1090390 AT4G00540.1 41.441 111 59 3 36 142 98 206 3.42e-17 79.3
Msa1090390 AT5G61420.1 50.000 76 33 2 106 180 2 73 2.85e-16 75.9
Msa1090390 AT5G40430.1 31.356 118 79 1 18 135 33 148 1.11e-14 70.9
Msa1090390 AT2G37630.1 38.000 100 60 1 38 135 3 102 1.19e-14 72.0
Msa1090390 AT2G02820.3 36.634 101 63 1 42 142 33 132 8.77e-14 69.3
Msa1090390 AT4G28110.2 68.293 41 13 0 113 153 4 44 1.04e-13 67.4
Msa1090390 AT2G02820.2 36.634 101 63 1 42 142 33 132 1.10e-13 69.3
Msa1090390 AT2G02820.1 36.634 101 63 1 42 142 33 132 1.21e-13 69.3
Msa1090390 AT5G15310.3 68.293 41 13 0 113 153 9 49 2.29e-13 67.4
Msa1090390 AT1G14350.2 37.255 102 61 2 42 142 28 127 2.94e-13 68.2
Msa1090390 AT1G14350.1 37.255 102 61 2 42 142 28 127 2.94e-13 68.2
Msa1090390 AT5G59780.1 58.333 48 20 0 95 142 1 48 1.96e-12 63.2
Msa1090390 AT3G46130.2 58.333 48 20 0 95 142 1 48 3.49e-12 63.2
Msa1090390 AT1G74650.3 64.286 42 15 0 103 144 2 43 9.35e-12 62.8
Msa1090390 AT1G74430.2 49.020 51 26 0 112 162 18 68 1.79e-11 61.2
Msa1090390 AT3G18100.2 30.841 107 73 1 38 144 332 437 2.06e-11 62.8
Msa1090390 AT3G18100.4 30.841 107 73 1 38 144 384 489 2.14e-11 62.8
Msa1090390 AT3G18100.3 30.841 107 73 1 38 144 497 602 2.34e-11 62.8
Msa1090390 AT4G25560.2 59.524 42 17 0 99 140 6 47 2.49e-11 61.2
Msa1090390 AT3G18100.1 30.841 107 73 1 38 144 545 650 2.58e-11 62.8
Msa1090390 AT3G28910.2 60.000 45 18 0 103 147 2 46 2.70e-11 61.6
Msa1090390 AT1G22640.2 60.000 45 18 0 113 157 16 60 3.53e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGACCCTCTTGGAATATT+TGG 0.182610 7_3:-4759814 None:intergenic
CTTAAGAGGTTCAAAGAAAA+TGG 0.197461 7_3:+4758694 Msa1090390:CDS
CTCTTGGAATATTTGGTTCT+TGG 0.205405 7_3:-4759807 None:intergenic
AACAATGAATCCCATTATTA+AGG 0.275432 7_3:-4758799 None:intergenic
ATTTCATTGTCTGTTCTTCC+AGG 0.318010 7_3:-4759664 None:intergenic
AAATATTTACCAGCAAGTTT+AGG 0.340530 7_3:-4758833 None:intergenic
CAGTAAAACCACCTCTCTTA+AGG 0.350372 7_3:-4759005 None:intergenic
AAGAAGAAGCTGAAGTTACT+TGG 0.371698 7_3:+4759712 Msa1090390:CDS
TACATGCCCGTCTTGGTAAC+AGG 0.388478 7_3:+4759055 Msa1090390:CDS
TCAATTGGCTTGTGGTTCAC+AGG 0.398875 7_3:-4759742 None:intergenic
TTAATAATGGGATTCATTGT+TGG 0.399119 7_3:+4758801 Msa1090390:CDS
AAATGTGGAGATTAAATCCT+TGG 0.423182 7_3:+4759840 Msa1090390:CDS
ACAATGAAATTAAGAATCAT+TGG 0.430588 7_3:+4759677 Msa1090390:CDS
TTCAAAGGTAAAGACTTAAG+AGG 0.441066 7_3:+4758680 Msa1090390:CDS
TGGGATTCATTGTTGGAGAA+TGG 0.443481 7_3:+4758808 Msa1090390:CDS
TGAGATGGATTAATTATTTG+AGG 0.448610 7_3:+4758977 Msa1090390:CDS
AGAATGGTTCCTAAACTTGC+TGG 0.450215 7_3:+4758824 Msa1090390:CDS
TTAAGAGGTTCAAAGAAAAT+GGG 0.482047 7_3:+4758695 Msa1090390:CDS
TGATCTTCTTCAATAGTCCA+TGG 0.502122 7_3:-4758758 None:intergenic
CAATTGGCTTGTGGTTCACA+GGG 0.514801 7_3:-4759741 None:intergenic
AAACCACCTCTCTTAAGGTC+TGG 0.517152 7_3:-4759000 None:intergenic
ATACAACTACATGCCCGTCT+TGG 0.546437 7_3:+4759048 Msa1090390:CDS
TCATTCAATGTCATCACACT+TGG 0.553506 7_3:+4758631 None:intergenic
CAACCATGTTGTGATAAGGT+TGG 0.554200 7_3:+4758722 Msa1090390:CDS
GATAAGGTTGGTTTGAAGAG+AGG 0.562058 7_3:+4758734 Msa1090390:CDS
GTTGTACCTGTTACCAAGAC+GGG 0.563704 7_3:-4759061 None:intergenic
ATTAAATCCTTGGAAAGTGA+TGG 0.567935 7_3:+4759850 Msa1090390:CDS
AAGAGGGTCTAAAGAAAATG+TGG 0.576348 7_3:+4759825 Msa1090390:CDS
AGGCCAGACCTTAAGAGAGG+TGG 0.579334 7_3:+4758997 Msa1090390:CDS
GAAAGAGTTGTAGACTGAGA+TGG 0.589115 7_3:+4758962 Msa1090390:CDS
AAGACAACCATGTTGTGATA+AGG 0.590627 7_3:+4758718 Msa1090390:CDS
TTGAGGCCAGACCTTAAGAG+AGG 0.617024 7_3:+4758994 Msa1090390:CDS
CACACTTGGTAACTCTTACG+TGG 0.626690 7_3:+4758645 Msa1090390:CDS
CGTTGTACCTGTTACCAAGA+CGG 0.638126 7_3:-4759062 None:intergenic
AAACCAACCTTATCACAACA+TGG 0.641918 7_3:-4758725 None:intergenic
CAAGAACCAAATATTCCAAG+AGG 0.654416 7_3:+4759808 Msa1090390:CDS
ATGGAAAAGAGAAGAAAACA+AGG 0.663052 7_3:+4759897 Msa1090390:CDS
TTGGTTTGAAGAGAGGACCA+TGG 0.663165 7_3:+4758741 Msa1090390:CDS
AAGAACCAAATATTCCAAGA+GGG 0.665540 7_3:+4759809 Msa1090390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTATCCTTAATAAT+GGG + chr7_3:4758789-4758808 Msa1090390:CDS 15.0%
!!! ATCGTTTTAAATTAAAATTG+CGG + chr7_3:4759206-4759225 Msa1090390:intron 15.0%
!!! TAAACCATAATTTTAAATTG+CGG - chr7_3:4759330-4759349 None:intergenic 15.0%
!! TTGAAATTTGAATCTAATAT+TGG + chr7_3:4759553-4759572 Msa1090390:intron 15.0%
!!! AATATTTTTATCATCATCAA+GGG - chr7_3:4759782-4759801 None:intergenic 15.0%
!!! TAATATTTTTATCATCATCA+AGG - chr7_3:4759783-4759802 None:intergenic 15.0%
!!! TGAATTTTATCCTTAATAAT+GGG + chr7_3:4758789-4758808 Msa1090390:CDS 15.0%
!!! ATCGTTTTAAATTAAAATTG+CGG + chr7_3:4759206-4759225 Msa1090390:intron 15.0%
!!! TAAACCATAATTTTAAATTG+CGG - chr7_3:4759330-4759349 None:intergenic 15.0%
!! TTGAAATTTGAATCTAATAT+TGG + chr7_3:4759553-4759572 Msa1090390:intron 15.0%
!!! AATATTTTTATCATCATCAA+GGG - chr7_3:4759782-4759801 None:intergenic 15.0%
!!! TAATATTTTTATCATCATCA+AGG - chr7_3:4759783-4759802 None:intergenic 15.0%
!!! GTGAATTTTATCCTTAATAA+TGG + chr7_3:4758788-4758807 Msa1090390:CDS 20.0%
!!! AACATGGTGAATATTTTTTA+AGG + chr7_3:4758925-4758944 Msa1090390:intron 20.0%
!! AAATTTCATTATGCTTTCTA+AGG + chr7_3:4759094-4759113 Msa1090390:intron 20.0%
!!! TTTTATACATCAACTTATCT+TGG + chr7_3:4759163-4759182 Msa1090390:intron 20.0%
!!! TGCATTTTACTACAATATAA+AGG - chr7_3:4759411-4759430 None:intergenic 20.0%
!! CAAATCAAAATTTAGAAGTA+TGG + chr7_3:4759498-4759517 Msa1090390:intron 20.0%
!!! TGGTTTTAAAACAATATCAA+TGG + chr7_3:4759573-4759592 Msa1090390:intron 20.0%
!!! TAACATAAGCACATTTTTTT+AGG + chr7_3:4759617-4759636 Msa1090390:intron 20.0%
!! ACAATGAAATTAAGAATCAT+TGG + chr7_3:4759677-4759696 Msa1090390:CDS 20.0%
!!! GTGAATTTTATCCTTAATAA+TGG + chr7_3:4758788-4758807 Msa1090390:CDS 20.0%
!!! AACATGGTGAATATTTTTTA+AGG + chr7_3:4758925-4758944 Msa1090390:intron 20.0%
!! AAATTTCATTATGCTTTCTA+AGG + chr7_3:4759094-4759113 Msa1090390:intron 20.0%
!!! TTTTATACATCAACTTATCT+TGG + chr7_3:4759163-4759182 Msa1090390:intron 20.0%
!!! TGCATTTTACTACAATATAA+AGG - chr7_3:4759411-4759430 None:intergenic 20.0%
!! CAAATCAAAATTTAGAAGTA+TGG + chr7_3:4759498-4759517 Msa1090390:intron 20.0%
!!! TGGTTTTAAAACAATATCAA+TGG + chr7_3:4759573-4759592 Msa1090390:intron 20.0%
!!! TAACATAAGCACATTTTTTT+AGG + chr7_3:4759617-4759636 Msa1090390:intron 20.0%
!! ACAATGAAATTAAGAATCAT+TGG + chr7_3:4759677-4759696 Msa1090390:CDS 20.0%
!! TGGTATCTTGATATTTTCAA+AGG + chr7_3:4758665-4758684 Msa1090390:CDS 25.0%
! TTAAGAGGTTCAAAGAAAAT+GGG + chr7_3:4758695-4758714 Msa1090390:CDS 25.0%
! AACAATGAATCCCATTATTA+AGG - chr7_3:4758802-4758821 None:intergenic 25.0%
!! TTAATAATGGGATTCATTGT+TGG + chr7_3:4758801-4758820 Msa1090390:CDS 25.0%
! AAATATTTACCAGCAAGTTT+AGG - chr7_3:4758836-4758855 None:intergenic 25.0%
!!! TTGAAAAAGTGTTTCTAACA+TGG + chr7_3:4758909-4758928 Msa1090390:intron 25.0%
!!! TGAGATGGATTAATTATTTG+AGG + chr7_3:4758977-4758996 Msa1090390:CDS 25.0%
!! TTGACCGCAATTTAAAATTA+TGG + chr7_3:4759323-4759342 Msa1090390:intron 25.0%
! CACAAAAGAAATGACAAAAA+CGG + chr7_3:4759873-4759892 Msa1090390:CDS 25.0%
!! TGGTATCTTGATATTTTCAA+AGG + chr7_3:4758665-4758684 Msa1090390:CDS 25.0%
! TTAAGAGGTTCAAAGAAAAT+GGG + chr7_3:4758695-4758714 Msa1090390:CDS 25.0%
! AACAATGAATCCCATTATTA+AGG - chr7_3:4758802-4758821 None:intergenic 25.0%
!! TTAATAATGGGATTCATTGT+TGG + chr7_3:4758801-4758820 Msa1090390:CDS 25.0%
! AAATATTTACCAGCAAGTTT+AGG - chr7_3:4758836-4758855 None:intergenic 25.0%
!!! TTGAAAAAGTGTTTCTAACA+TGG + chr7_3:4758909-4758928 Msa1090390:intron 25.0%
!!! TGAGATGGATTAATTATTTG+AGG + chr7_3:4758977-4758996 Msa1090390:CDS 25.0%
!! TTGACCGCAATTTAAAATTA+TGG + chr7_3:4759323-4759342 Msa1090390:intron 25.0%
! CACAAAAGAAATGACAAAAA+CGG + chr7_3:4759873-4759892 Msa1090390:CDS 25.0%
TTCAAAGGTAAAGACTTAAG+AGG + chr7_3:4758680-4758699 Msa1090390:CDS 30.0%
CTTAAGAGGTTCAAAGAAAA+TGG + chr7_3:4758694-4758713 Msa1090390:CDS 30.0%
!!! TTTTAAGGTCTTCTAAGATG+TGG + chr7_3:4758940-4758959 Msa1090390:intron 30.0%
GACTATTGTGAATAACTTAG+AGG - chr7_3:4759135-4759154 None:intergenic 30.0%
CCTCTCAAATTGTAATGTTA+CGG + chr7_3:4759472-4759491 Msa1090390:intron 30.0%
!!! CATAAGCACATTTTTTTAGG+TGG + chr7_3:4759620-4759639 Msa1090390:intron 30.0%
AAGAACCAAATATTCCAAGA+GGG + chr7_3:4759809-4759828 Msa1090390:CDS 30.0%
AAATGTGGAGATTAAATCCT+TGG + chr7_3:4759840-4759859 Msa1090390:CDS 30.0%
ATTAAATCCTTGGAAAGTGA+TGG + chr7_3:4759850-4759869 Msa1090390:CDS 30.0%
AAGAAATGACAAAAACGGAA+TGG + chr7_3:4759878-4759897 Msa1090390:CDS 30.0%
ATGGAAAAGAGAAGAAAACA+AGG + chr7_3:4759897-4759916 Msa1090390:CDS 30.0%
TTCAAAGGTAAAGACTTAAG+AGG + chr7_3:4758680-4758699 Msa1090390:CDS 30.0%
CTTAAGAGGTTCAAAGAAAA+TGG + chr7_3:4758694-4758713 Msa1090390:CDS 30.0%
!!! TTTTAAGGTCTTCTAAGATG+TGG + chr7_3:4758940-4758959 Msa1090390:intron 30.0%
GACTATTGTGAATAACTTAG+AGG - chr7_3:4759135-4759154 None:intergenic 30.0%
CCTCTCAAATTGTAATGTTA+CGG + chr7_3:4759472-4759491 Msa1090390:intron 30.0%
!!! CATAAGCACATTTTTTTAGG+TGG + chr7_3:4759620-4759639 Msa1090390:intron 30.0%
AAGAACCAAATATTCCAAGA+GGG + chr7_3:4759809-4759828 Msa1090390:CDS 30.0%
AAATGTGGAGATTAAATCCT+TGG + chr7_3:4759840-4759859 Msa1090390:CDS 30.0%
ATTAAATCCTTGGAAAGTGA+TGG + chr7_3:4759850-4759869 Msa1090390:CDS 30.0%
AAGAAATGACAAAAACGGAA+TGG + chr7_3:4759878-4759897 Msa1090390:CDS 30.0%
ATGGAAAAGAGAAGAAAACA+AGG + chr7_3:4759897-4759916 Msa1090390:CDS 30.0%
AAGACAACCATGTTGTGATA+AGG + chr7_3:4758718-4758737 Msa1090390:CDS 35.0%
AAACCAACCTTATCACAACA+TGG - chr7_3:4758728-4758747 None:intergenic 35.0%
TGATCTTCTTCAATAGTCCA+TGG - chr7_3:4758761-4758780 None:intergenic 35.0%
!! TGGTTTTACTGAAATGGAAG+AGG + chr7_3:4759017-4759036 Msa1090390:CDS 35.0%
!! TTCTAAGGTTTGCATACATG+AGG + chr7_3:4759109-4759128 Msa1090390:intron 35.0%
GCGACAACAATATAACGATT+TGG - chr7_3:4759292-4759311 None:intergenic 35.0%
! TTTTGACATTGTGTATGCGA+AGG + chr7_3:4759354-4759373 Msa1090390:intron 35.0%
! AGTGTGATAGTTTGCAGTTA+TGG + chr7_3:4759379-4759398 Msa1090390:intron 35.0%
TGTAGTAAAATGCAGTCATG+TGG + chr7_3:4759417-4759436 Msa1090390:intron 35.0%
CCGTAACATTACAATTTGAG+AGG - chr7_3:4759475-4759494 None:intergenic 35.0%
! AAGATTGCTTCACATTTTCC+TGG + chr7_3:4759646-4759665 Msa1090390:CDS 35.0%
ATTTCATTGTCTGTTCTTCC+AGG - chr7_3:4759667-4759686 None:intergenic 35.0%
AAGAAGAAGCTGAAGTTACT+TGG + chr7_3:4759712-4759731 Msa1090390:CDS 35.0%
!!! GTTTGTTGCTTTTGCTCAAT+TGG - chr7_3:4759760-4759779 None:intergenic 35.0%
!! CTCTTGGAATATTTGGTTCT+TGG - chr7_3:4759810-4759829 None:intergenic 35.0%
CAAGAACCAAATATTCCAAG+AGG + chr7_3:4759808-4759827 Msa1090390:CDS 35.0%
TTAGACCCTCTTGGAATATT+TGG - chr7_3:4759817-4759836 None:intergenic 35.0%
! ACATTTTCTTTAGACCCTCT+TGG - chr7_3:4759826-4759845 None:intergenic 35.0%
AAGAGGGTCTAAAGAAAATG+TGG + chr7_3:4759825-4759844 Msa1090390:CDS 35.0%
AAGACAACCATGTTGTGATA+AGG + chr7_3:4758718-4758737 Msa1090390:CDS 35.0%
AAACCAACCTTATCACAACA+TGG - chr7_3:4758728-4758747 None:intergenic 35.0%
TGATCTTCTTCAATAGTCCA+TGG - chr7_3:4758761-4758780 None:intergenic 35.0%
!! TGGTTTTACTGAAATGGAAG+AGG + chr7_3:4759017-4759036 Msa1090390:CDS 35.0%
!! TTCTAAGGTTTGCATACATG+AGG + chr7_3:4759109-4759128 Msa1090390:intron 35.0%
GCGACAACAATATAACGATT+TGG - chr7_3:4759292-4759311 None:intergenic 35.0%
! TTTTGACATTGTGTATGCGA+AGG + chr7_3:4759354-4759373 Msa1090390:intron 35.0%
! AGTGTGATAGTTTGCAGTTA+TGG + chr7_3:4759379-4759398 Msa1090390:intron 35.0%
TGTAGTAAAATGCAGTCATG+TGG + chr7_3:4759417-4759436 Msa1090390:intron 35.0%
CCGTAACATTACAATTTGAG+AGG - chr7_3:4759475-4759494 None:intergenic 35.0%
! AAGATTGCTTCACATTTTCC+TGG + chr7_3:4759646-4759665 Msa1090390:CDS 35.0%
ATTTCATTGTCTGTTCTTCC+AGG - chr7_3:4759667-4759686 None:intergenic 35.0%
AAGAAGAAGCTGAAGTTACT+TGG + chr7_3:4759712-4759731 Msa1090390:CDS 35.0%
!!! GTTTGTTGCTTTTGCTCAAT+TGG - chr7_3:4759760-4759779 None:intergenic 35.0%
!! CTCTTGGAATATTTGGTTCT+TGG - chr7_3:4759810-4759829 None:intergenic 35.0%
CAAGAACCAAATATTCCAAG+AGG + chr7_3:4759808-4759827 Msa1090390:CDS 35.0%
TTAGACCCTCTTGGAATATT+TGG - chr7_3:4759817-4759836 None:intergenic 35.0%
! ACATTTTCTTTAGACCCTCT+TGG - chr7_3:4759826-4759845 None:intergenic 35.0%
AAGAGGGTCTAAAGAAAATG+TGG + chr7_3:4759825-4759844 Msa1090390:CDS 35.0%
CAACCATGTTGTGATAAGGT+TGG + chr7_3:4758722-4758741 Msa1090390:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG + chr7_3:4758734-4758753 Msa1090390:CDS 40.0%
TGGGATTCATTGTTGGAGAA+TGG + chr7_3:4758808-4758827 Msa1090390:CDS 40.0%
AGAATGGTTCCTAAACTTGC+TGG + chr7_3:4758824-4758843 Msa1090390:CDS 40.0%
GAAAGAGTTGTAGACTGAGA+TGG + chr7_3:4758962-4758981 Msa1090390:CDS 40.0%
CAGTAAAACCACCTCTCTTA+AGG - chr7_3:4759008-4759027 None:intergenic 40.0%
!! GAGAGGTGGTTTTACTGAAA+TGG + chr7_3:4759011-4759030 Msa1090390:CDS 40.0%
!! TAACGATTTGGTGTCTGCAA+CGG - chr7_3:4759280-4759299 None:intergenic 40.0%
! TTTTGTGCCATCACTTTCCA+AGG - chr7_3:4759860-4759879 None:intergenic 40.0%
CAACCATGTTGTGATAAGGT+TGG + chr7_3:4758722-4758741 Msa1090390:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG + chr7_3:4758734-4758753 Msa1090390:CDS 40.0%
TGGGATTCATTGTTGGAGAA+TGG + chr7_3:4758808-4758827 Msa1090390:CDS 40.0%
AGAATGGTTCCTAAACTTGC+TGG + chr7_3:4758824-4758843 Msa1090390:CDS 40.0%
GAAAGAGTTGTAGACTGAGA+TGG + chr7_3:4758962-4758981 Msa1090390:CDS 40.0%
CAGTAAAACCACCTCTCTTA+AGG - chr7_3:4759008-4759027 None:intergenic 40.0%
!! GAGAGGTGGTTTTACTGAAA+TGG + chr7_3:4759011-4759030 Msa1090390:CDS 40.0%
!! TAACGATTTGGTGTCTGCAA+CGG - chr7_3:4759280-4759299 None:intergenic 40.0%
! TTTTGTGCCATCACTTTCCA+AGG - chr7_3:4759860-4759879 None:intergenic 40.0%
! CACACTTGGTAACTCTTACG+TGG + chr7_3:4758645-4758664 Msa1090390:CDS 45.0%
! TTGGTTTGAAGAGAGGACCA+TGG + chr7_3:4758741-4758760 Msa1090390:CDS 45.0%
AAACCACCTCTCTTAAGGTC+TGG - chr7_3:4759003-4759022 None:intergenic 45.0%
ATACAACTACATGCCCGTCT+TGG + chr7_3:4759048-4759067 Msa1090390:CDS 45.0%
GTTGTACCTGTTACCAAGAC+GGG - chr7_3:4759064-4759083 None:intergenic 45.0%
CGTTGTACCTGTTACCAAGA+CGG - chr7_3:4759065-4759084 None:intergenic 45.0%
AAAATGCAGTCATGTGGCCA+CGG + chr7_3:4759423-4759442 Msa1090390:intron 45.0%
!! CAATTGGCTTGTGGTTCACA+GGG - chr7_3:4759744-4759763 None:intergenic 45.0%
!! TCAATTGGCTTGTGGTTCAC+AGG - chr7_3:4759745-4759764 None:intergenic 45.0%
!!! GCTTTTGCTCAATTGGCTTG+TGG - chr7_3:4759753-4759772 None:intergenic 45.0%
! CACACTTGGTAACTCTTACG+TGG + chr7_3:4758645-4758664 Msa1090390:CDS 45.0%
! TTGGTTTGAAGAGAGGACCA+TGG + chr7_3:4758741-4758760 Msa1090390:CDS 45.0%
AAACCACCTCTCTTAAGGTC+TGG - chr7_3:4759003-4759022 None:intergenic 45.0%
ATACAACTACATGCCCGTCT+TGG + chr7_3:4759048-4759067 Msa1090390:CDS 45.0%
GTTGTACCTGTTACCAAGAC+GGG - chr7_3:4759064-4759083 None:intergenic 45.0%
CGTTGTACCTGTTACCAAGA+CGG - chr7_3:4759065-4759084 None:intergenic 45.0%
AAAATGCAGTCATGTGGCCA+CGG + chr7_3:4759423-4759442 Msa1090390:intron 45.0%
!! CAATTGGCTTGTGGTTCACA+GGG - chr7_3:4759744-4759763 None:intergenic 45.0%
!! TCAATTGGCTTGTGGTTCAC+AGG - chr7_3:4759745-4759764 None:intergenic 45.0%
!!! GCTTTTGCTCAATTGGCTTG+TGG - chr7_3:4759753-4759772 None:intergenic 45.0%
TTGAGGCCAGACCTTAAGAG+AGG + chr7_3:4758994-4759013 Msa1090390:CDS 50.0%
! TACATGCCCGTCTTGGTAAC+AGG + chr7_3:4759055-4759074 Msa1090390:CDS 50.0%
CTACATTGCAATTGCAGCCG+TGG - chr7_3:4759443-4759462 None:intergenic 50.0%
TTGAGGCCAGACCTTAAGAG+AGG + chr7_3:4758994-4759013 Msa1090390:CDS 50.0%
! TACATGCCCGTCTTGGTAAC+AGG + chr7_3:4759055-4759074 Msa1090390:CDS 50.0%
CTACATTGCAATTGCAGCCG+TGG - chr7_3:4759443-4759462 None:intergenic 50.0%
AGGCCAGACCTTAAGAGAGG+TGG + chr7_3:4758997-4759016 Msa1090390:CDS 55.0%
AGGCCAGACCTTAAGAGAGG+TGG + chr7_3:4758997-4759016 Msa1090390:CDS 55.0%
GGTGTCTGCAACGGCAATCG+TGG - chr7_3:4759271-4759290 None:intergenic 60.0%
GGTGTCTGCAACGGCAATCG+TGG - chr7_3:4759271-4759290 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 4758638 4759927 4758638 ID=Msa1090390;Name=Msa1090390
chr7_3 mRNA 4758638 4759927 4758638 ID=Msa1090390-mRNA-1;Parent=Msa1090390;Name=Msa1090390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.33|1|1|1|3|0|208
chr7_3 exon 4758638 4758845 4758638 ID=Msa1090390-mRNA-1:exon:1616;Parent=Msa1090390-mRNA-1
chr7_3 exon 4758947 4759076 4758947 ID=Msa1090390-mRNA-1:exon:1617;Parent=Msa1090390-mRNA-1
chr7_3 exon 4759639 4759927 4759639 ID=Msa1090390-mRNA-1:exon:1618;Parent=Msa1090390-mRNA-1
chr7_3 CDS 4758638 4758845 4758638 ID=Msa1090390-mRNA-1:cds;Parent=Msa1090390-mRNA-1
chr7_3 CDS 4758947 4759076 4758947 ID=Msa1090390-mRNA-1:cds;Parent=Msa1090390-mRNA-1
chr7_3 CDS 4759639 4759927 4759639 ID=Msa1090390-mRNA-1:cds;Parent=Msa1090390-mRNA-1
Gene Sequence

>Msa1090390

ATGTCATCACACTTGGTAACTCTTACGTGGTATCTTGATATTTTCAAAGGTAAAGACTTAAGAGGTTCAAAGAAAATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAAGAAGATCACAAGCTTGTGAATTTTATCCTTAATAATGGGATTCATTGTTGGAGAATGGTTCCTAAACTTGCTGGTCTTCTAAGATGTGGAAAGAGTTGTAGACTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATGCCCGTCTTGGTAACAGGTGGTCAAAGATTGCTTCACATTTTCCTGGAAGAACAGACAATGAAATTAAGAATCATTGGAACACAAAAATCAAGAAGAAGCTGAAGTTACTTGGATTAGACCCTGTGAACCACAAGCCAATTGAGCAAAAGCAACAAACCCTTGATGATGATAAAAATATTATTAACCAAGAACCAAATATTCCAAGAGGGTCTAAAGAAAATGTGGAGATTAAATCCTTGGAAAGTGATGGCACAAAAGAAATGACAAAAACGGAATGGAAAAGAGAAGAAAACAAGGTGACTTGA
Protein sequence

>Msa1090390

MSSHLVTLTWYLDIFKGKDLRGSKKMGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTKIKKKLKLLGLDPVNHKPIEQKQQTLDDDKNIINQEPNIPRGSKENVEIKSLESDGTKEMTKTEWKREENKVT*