Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090700 | PNX82010.1 | 80.255 | 157 | 31 | 0 | 1 | 157 | 1 | 157 | 7.39e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090700 | sp|P59468|LBD24_ARATH | 66.019 | 103 | 35 | 0 | 4 | 106 | 4 | 106 | 1.35e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090700 | A0A2K3LTZ7 | 80.255 | 157 | 31 | 0 | 1 | 157 | 1 | 157 | 3.53e-91 | 271 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1090700 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090700 | MtrunA17_Chr5g0444351 | 75.796 | 157 | 26 | 1 | 1 | 157 | 1 | 145 | 3.78e-85 | 246 |
| Msa1090700 | MtrunA17_Chr7g0225111 | 94.828 | 116 | 6 | 0 | 1 | 116 | 1 | 116 | 1.25e-81 | 236 |
| Msa1090700 | MtrunA17_Chr2g0311601 | 50.476 | 105 | 52 | 0 | 6 | 110 | 14 | 118 | 7.01e-39 | 129 |
| Msa1090700 | MtrunA17_Chr5g0438091 | 46.970 | 132 | 70 | 0 | 6 | 137 | 40 | 171 | 2.72e-37 | 126 |
| Msa1090700 | MtrunA17_Chr5g0437571 | 50.459 | 109 | 54 | 0 | 6 | 114 | 7 | 115 | 4.11e-37 | 125 |
| Msa1090700 | MtrunA17_Chr4g0043421 | 50.000 | 106 | 53 | 0 | 6 | 111 | 16 | 121 | 5.64e-36 | 122 |
| Msa1090700 | MtrunA17_Chr3g0106101 | 47.222 | 108 | 57 | 0 | 6 | 113 | 8 | 115 | 1.56e-35 | 121 |
| Msa1090700 | MtrunA17_Chr3g0129071 | 51.887 | 106 | 51 | 0 | 6 | 111 | 48 | 153 | 1.79e-35 | 123 |
| Msa1090700 | MtrunA17_Chr4g0058651 | 51.402 | 107 | 52 | 0 | 6 | 112 | 12 | 118 | 3.09e-35 | 121 |
| Msa1090700 | MtrunA17_Chr3g0114061 | 52.000 | 100 | 48 | 0 | 6 | 105 | 9 | 108 | 7.72e-35 | 119 |
| Msa1090700 | MtrunA17_Chr7g0227511 | 46.774 | 124 | 57 | 1 | 6 | 120 | 12 | 135 | 1.49e-34 | 119 |
| Msa1090700 | MtrunA17_Chr3g0117121 | 56.989 | 93 | 40 | 0 | 6 | 98 | 11 | 103 | 1.95e-34 | 119 |
| Msa1090700 | MtrunA17_Chr4g0030001 | 46.429 | 112 | 59 | 1 | 1 | 111 | 20 | 131 | 4.15e-34 | 118 |
| Msa1090700 | MtrunA17_Chr3g0097221 | 49.550 | 111 | 56 | 0 | 6 | 116 | 8 | 118 | 1.19e-33 | 119 |
| Msa1090700 | MtrunA17_Chr3g0115431 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 4.16e-33 | 116 |
| Msa1090700 | MtrunA17_Chr6g0449641 | 43.077 | 130 | 74 | 0 | 6 | 135 | 10 | 139 | 9.96e-33 | 113 |
| Msa1090700 | MtrunA17_Chr1g0200201 | 40.845 | 142 | 76 | 1 | 6 | 147 | 73 | 206 | 3.83e-32 | 114 |
| Msa1090700 | MtrunA17_Chr5g0432451 | 45.865 | 133 | 68 | 1 | 6 | 138 | 44 | 172 | 4.32e-32 | 114 |
| Msa1090700 | MtrunA17_Chr5g0402611 | 48.544 | 103 | 53 | 0 | 6 | 108 | 9 | 111 | 6.17e-32 | 115 |
| Msa1090700 | MtrunA17_Chr8g0353981 | 50.467 | 107 | 51 | 1 | 6 | 112 | 8 | 112 | 1.22e-31 | 113 |
| Msa1090700 | MtrunA17_Chr6g0449651 | 51.613 | 93 | 45 | 0 | 6 | 98 | 68 | 160 | 1.97e-30 | 109 |
| Msa1090700 | MtrunA17_Chr3g0113891 | 46.392 | 97 | 52 | 0 | 6 | 102 | 15 | 111 | 6.95e-30 | 107 |
| Msa1090700 | MtrunA17_Chr5g0437401 | 44.554 | 101 | 56 | 0 | 6 | 106 | 12 | 112 | 1.27e-29 | 106 |
| Msa1090700 | MtrunA17_Chr7g0260971 | 46.602 | 103 | 54 | 1 | 6 | 107 | 15 | 117 | 2.02e-29 | 107 |
| Msa1090700 | MtrunA17_Chr6g0452691 | 36.111 | 144 | 91 | 1 | 4 | 146 | 8 | 151 | 3.74e-28 | 102 |
| Msa1090700 | MtrunA17_Chr6g0460951 | 43.396 | 106 | 59 | 1 | 6 | 110 | 41 | 146 | 5.51e-28 | 103 |
| Msa1090700 | MtrunA17_Chr1g0184281 | 47.000 | 100 | 52 | 1 | 6 | 104 | 16 | 115 | 2.34e-27 | 101 |
| Msa1090700 | MtrunA17_Chr6g0452671 | 41.414 | 99 | 58 | 0 | 4 | 102 | 10 | 108 | 8.48e-26 | 97.4 |
| Msa1090700 | MtrunA17_Chr8g0374601 | 40.000 | 105 | 63 | 0 | 2 | 106 | 23 | 127 | 8.86e-26 | 99.0 |
| Msa1090700 | MtrunA17_Chr7g0261031 | 39.007 | 141 | 83 | 2 | 6 | 143 | 9 | 149 | 1.26e-25 | 97.4 |
| Msa1090700 | MtrunA17_Chr8g0351701 | 41.509 | 106 | 61 | 1 | 6 | 110 | 24 | 129 | 2.81e-25 | 96.7 |
| Msa1090700 | MtrunA17_Chr1g0184271 | 44.118 | 102 | 56 | 1 | 6 | 106 | 13 | 114 | 5.54e-25 | 95.9 |
| Msa1090700 | MtrunA17_Chr7g0245871 | 44.554 | 101 | 55 | 1 | 6 | 105 | 28 | 128 | 9.62e-25 | 95.5 |
| Msa1090700 | MtrunA17_Chr8g0374581 | 43.810 | 105 | 58 | 1 | 2 | 105 | 5 | 109 | 3.73e-24 | 93.6 |
| Msa1090700 | MtrunA17_Chr6g0452661 | 37.273 | 110 | 68 | 1 | 4 | 112 | 8 | 117 | 3.85e-24 | 94.4 |
| Msa1090700 | MtrunA17_Chr8g0374591 | 37.143 | 105 | 66 | 0 | 2 | 106 | 5 | 109 | 5.77e-24 | 90.5 |
| Msa1090700 | MtrunA17_Chr5g0435641 | 41.176 | 102 | 59 | 1 | 6 | 106 | 8 | 109 | 4.37e-23 | 90.1 |
| Msa1090700 | MtrunA17_Chr8g0351721 | 41.176 | 102 | 59 | 1 | 6 | 106 | 19 | 120 | 1.21e-22 | 89.4 |
| Msa1090700 | MtrunA17_Chr8g0342351 | 39.604 | 101 | 61 | 0 | 6 | 106 | 13 | 113 | 6.00e-22 | 88.6 |
| Msa1090700 | MtrunA17_Chr4g0055441 | 36.111 | 108 | 68 | 1 | 6 | 112 | 3 | 110 | 6.84e-22 | 85.9 |
| Msa1090700 | MtrunA17_Chr4g0059901 | 42.000 | 100 | 58 | 0 | 6 | 105 | 11 | 110 | 9.84e-22 | 88.2 |
| Msa1090700 | MtrunA17_Chr5g0439111 | 36.283 | 113 | 70 | 2 | 4 | 114 | 8 | 120 | 8.81e-21 | 85.1 |
| Msa1090700 | MtrunA17_Chr6g0460941 | 40.909 | 88 | 51 | 1 | 6 | 92 | 8 | 95 | 3.58e-20 | 79.7 |
| Msa1090700 | MtrunA17_Chr2g0330201 | 33.663 | 101 | 67 | 0 | 6 | 106 | 20 | 120 | 2.02e-18 | 79.7 |
| Msa1090700 | MtrunA17_Chr4g0040831 | 37.209 | 86 | 54 | 0 | 2 | 87 | 12 | 97 | 3.56e-18 | 77.4 |
| Msa1090700 | MtrunA17_Chr7g0245861 | 42.697 | 89 | 48 | 2 | 6 | 91 | 13 | 101 | 5.21e-18 | 75.5 |
| Msa1090700 | MtrunA17_Chr2g0326041 | 45.614 | 57 | 31 | 0 | 1 | 57 | 29 | 85 | 1.54e-15 | 67.8 |
| Msa1090700 | MtrunA17_Chr4g0046201 | 32.558 | 86 | 58 | 0 | 6 | 91 | 7 | 92 | 4.00e-13 | 65.1 |
| Msa1090700 | MtrunA17_Chr2g0326051 | 41.270 | 63 | 37 | 0 | 49 | 111 | 4 | 66 | 8.99e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090700 | AT3G26660.1 | 66.019 | 103 | 35 | 0 | 4 | 106 | 4 | 106 | 1.37e-47 | 150 |
| Msa1090700 | AT3G26620.1 | 66.019 | 103 | 35 | 0 | 4 | 106 | 4 | 106 | 1.70e-47 | 150 |
| Msa1090700 | AT2G30130.1 | 51.852 | 108 | 52 | 0 | 6 | 113 | 9 | 116 | 5.41e-38 | 128 |
| Msa1090700 | AT1G31320.1 | 62.791 | 86 | 32 | 0 | 6 | 91 | 14 | 99 | 1.96e-35 | 121 |
| Msa1090700 | AT1G07900.1 | 43.902 | 123 | 64 | 1 | 6 | 128 | 34 | 151 | 9.92e-35 | 120 |
| Msa1090700 | AT5G63090.4 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1090700 | AT5G63090.3 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1090700 | AT5G63090.2 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1090700 | AT5G63090.1 | 46.957 | 115 | 61 | 0 | 6 | 120 | 12 | 126 | 3.06e-34 | 119 |
| Msa1090700 | AT2G30340.2 | 50.000 | 106 | 53 | 0 | 6 | 111 | 54 | 159 | 3.39e-34 | 121 |
| Msa1090700 | AT2G30340.1 | 50.000 | 106 | 53 | 0 | 6 | 111 | 53 | 158 | 3.49e-34 | 120 |
| Msa1090700 | AT2G28500.1 | 45.946 | 111 | 60 | 0 | 1 | 111 | 51 | 161 | 5.11e-34 | 119 |
| Msa1090700 | AT3G27650.1 | 50.000 | 100 | 50 | 0 | 6 | 105 | 40 | 139 | 3.52e-33 | 115 |
| Msa1090700 | AT5G66870.1 | 48.515 | 101 | 52 | 0 | 6 | 106 | 8 | 108 | 2.69e-32 | 117 |
| Msa1090700 | AT2G23660.2 | 48.515 | 101 | 52 | 0 | 6 | 106 | 6 | 106 | 9.13e-32 | 115 |
| Msa1090700 | AT2G23660.3 | 48.515 | 101 | 52 | 0 | 6 | 106 | 6 | 106 | 9.13e-32 | 115 |
| Msa1090700 | AT2G23660.1 | 48.515 | 101 | 52 | 0 | 6 | 106 | 6 | 106 | 9.13e-32 | 115 |
| Msa1090700 | AT2G40470.2 | 51.923 | 104 | 50 | 0 | 6 | 109 | 21 | 124 | 1.04e-31 | 112 |
| Msa1090700 | AT1G65620.1 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1090700 | AT1G65620.4 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1090700 | AT1G65620.3 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1090700 | AT1G65620.5 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1090700 | AT1G65620.2 | 48.077 | 104 | 54 | 0 | 6 | 109 | 10 | 113 | 1.78e-31 | 112 |
| Msa1090700 | AT2G40470.1 | 51.923 | 104 | 50 | 0 | 6 | 109 | 46 | 149 | 1.80e-31 | 112 |
| Msa1090700 | AT1G16530.1 | 49.515 | 103 | 51 | 1 | 6 | 107 | 15 | 117 | 4.44e-31 | 110 |
| Msa1090700 | AT3G11090.1 | 44.660 | 103 | 57 | 0 | 6 | 108 | 12 | 114 | 8.51e-31 | 109 |
| Msa1090700 | AT4G00210.1 | 37.500 | 144 | 80 | 3 | 6 | 139 | 12 | 155 | 7.36e-27 | 100 |
| Msa1090700 | AT3G50510.1 | 34.899 | 149 | 81 | 2 | 6 | 154 | 13 | 145 | 1.90e-26 | 99.4 |
| Msa1090700 | AT3G50510.2 | 34.899 | 149 | 81 | 2 | 6 | 154 | 13 | 145 | 1.90e-26 | 99.4 |
| Msa1090700 | AT2G42430.1 | 44.762 | 105 | 57 | 1 | 6 | 109 | 16 | 120 | 2.35e-26 | 100 |
| Msa1090700 | AT3G03760.1 | 44.554 | 101 | 55 | 1 | 6 | 105 | 52 | 152 | 2.78e-26 | 100 |
| Msa1090700 | AT5G06080.1 | 43.119 | 109 | 61 | 1 | 6 | 113 | 8 | 116 | 4.03e-25 | 95.1 |
| Msa1090700 | AT2G42440.1 | 45.000 | 100 | 54 | 1 | 6 | 104 | 8 | 107 | 5.17e-25 | 96.7 |
| Msa1090700 | AT3G13850.1 | 35.714 | 154 | 91 | 2 | 6 | 151 | 37 | 190 | 9.47e-25 | 96.7 |
| Msa1090700 | AT3G58190.1 | 44.118 | 102 | 56 | 1 | 6 | 106 | 12 | 113 | 1.07e-24 | 95.1 |
| Msa1090700 | AT4G00220.1 | 42.308 | 104 | 59 | 1 | 8 | 110 | 20 | 123 | 1.38e-23 | 92.4 |
| Msa1090700 | AT2G45420.1 | 42.308 | 104 | 59 | 1 | 8 | 110 | 40 | 143 | 5.12e-23 | 91.7 |
| Msa1090700 | AT2G45410.1 | 41.000 | 100 | 58 | 1 | 8 | 106 | 19 | 118 | 1.66e-22 | 89.0 |
| Msa1090700 | AT5G35900.1 | 37.624 | 101 | 63 | 0 | 6 | 106 | 6 | 106 | 1.16e-21 | 87.0 |
| Msa1090700 | AT3G47870.1 | 37.500 | 104 | 65 | 0 | 6 | 109 | 37 | 140 | 1.55e-21 | 89.0 |
| Msa1090700 | AT2G31310.1 | 34.314 | 102 | 66 | 1 | 6 | 106 | 8 | 109 | 1.31e-19 | 81.3 |
| Msa1090700 | AT1G06280.1 | 36.782 | 87 | 55 | 0 | 6 | 92 | 25 | 111 | 4.84e-17 | 75.1 |
| Msa1090700 | AT1G72980.1 | 35.000 | 100 | 65 | 0 | 6 | 105 | 14 | 113 | 6.65e-17 | 74.7 |
| Msa1090700 | AT2G19820.1 | 32.979 | 94 | 62 | 1 | 6 | 98 | 13 | 106 | 1.21e-14 | 66.6 |
| Msa1090700 | AT4G22700.1 | 33.043 | 115 | 71 | 3 | 1 | 110 | 1 | 114 | 3.46e-13 | 64.3 |
| Msa1090700 | AT5G15060.1 | 43.243 | 74 | 38 | 2 | 6 | 76 | 18 | 90 | 9.21e-13 | 62.4 |
| Msa1090700 | AT1G36000.1 | 29.545 | 88 | 62 | 0 | 4 | 91 | 8 | 95 | 1.66e-11 | 58.5 |
Find 31 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCAAATTGTTGATTT+TGG | 0.080390 | 7_3:+5647540 | None:intergenic |
| AGGATTCAAGATCCTGTTTA+TGG | 0.232394 | 7_3:-5647656 | Msa1090700:CDS |
| GGCCTAGTCAAACTCCTAAT+TGG | 0.295938 | 7_3:-5647427 | Msa1090700:CDS |
| GGATCATTGGGAGGGAAATA+TGG | 0.321654 | 7_3:+5648161 | None:intergenic |
| GCTTCTGTTCACCGAATCTA+TGG | 0.327300 | 7_3:-5648128 | Msa1090700:CDS |
| AGCAAATCTTTGAGGATCAT+TGG | 0.352548 | 7_3:+5648148 | None:intergenic |
| AACTCCTAATTGGTTCAATT+AGG | 0.365498 | 7_3:-5647417 | None:intergenic |
| TTAACATCATGATTTATAGA+AGG | 0.383363 | 7_3:-5648238 | None:intergenic |
| AAGTCCTAATTGAACCAATT+AGG | 0.385923 | 7_3:+5647413 | None:intergenic |
| ATCCCAACACATCCATAAAC+AGG | 0.432009 | 7_3:+5647644 | None:intergenic |
| GCAAATCTTTGAGGATCATT+GGG | 0.442273 | 7_3:+5648149 | None:intergenic |
| CTCCAAAATCAACAATTTGA+AGG | 0.458414 | 7_3:-5647542 | Msa1090700:CDS |
| ATCTATGGTGGTAGCAATGT+TGG | 0.480363 | 7_3:-5648113 | Msa1090700:CDS |
| TGTATTTAGAAGCACAATGT+AGG | 0.497154 | 7_3:-5647676 | Msa1090700:CDS |
| ATCCTGTTTATGGATGTGTT+GGG | 0.518295 | 7_3:-5647646 | Msa1090700:CDS |
| TCAAGATACAGAAGTTGAGT+TGG | 0.518830 | 7_3:-5647597 | Msa1090700:CDS |
| TATGGAGAGAAAATGCAATC+AGG | 0.521384 | 7_3:+5648179 | None:intergenic |
| ACAACATGGAGCAGATTCAA+TGG | 0.528352 | 7_3:-5647448 | Msa1090700:CDS |
| CATTGCTACCACCATAGATT+CGG | 0.528587 | 7_3:+5648117 | None:intergenic |
| GATCCTGTTTATGGATGTGT+TGG | 0.530554 | 7_3:-5647647 | Msa1090700:CDS |
| TGAACAGAAGCAAATCTTTG+AGG | 0.534397 | 7_3:+5648140 | None:intergenic |
| AATACATAGAATTTGCAGCT+TGG | 0.550687 | 7_3:+5647693 | None:intergenic |
| CTTGCAAGAGTCAAAGAAGA+AGG | 0.562843 | 7_3:-5648208 | Msa1090700:CDS |
| ATCTTTGAGGATCATTGGGA+GGG | 0.584186 | 7_3:+5648153 | None:intergenic |
| AATCTTTGAGGATCATTGGG+AGG | 0.604113 | 7_3:+5648152 | None:intergenic |
| TCTGTTCACCGAATCTATGG+TGG | 0.619615 | 7_3:-5648125 | Msa1090700:CDS |
| AACCAATTAGGAGTTTGACT+AGG | 0.647531 | 7_3:+5647425 | None:intergenic |
| TCCATGTTGTTACTATGTAG+TGG | 0.647940 | 7_3:+5647461 | None:intergenic |
| GCCACTACATAGTAACAACA+TGG | 0.651155 | 7_3:-5647462 | Msa1090700:CDS |
| GCTTGGTGTCGTACATAGTG+AGG | 0.654586 | 7_3:+5647710 | None:intergenic |
| GGAGAGAAAATGCAATCAGG+AGG | 0.655607 | 7_3:+5648182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAATAATCTTATTG+TGG | - | chr7_3:5647893-5647912 | Msa1090700:intron | 10.0% |
| !!! | ATTTTAAAATAATCTTATTG+TGG | - | chr7_3:5647893-5647912 | Msa1090700:intron | 10.0% |
| !! | AACATTATATAATTATAGCA+TGG | - | chr7_3:5647801-5647820 | Msa1090700:intron | 15.0% |
| !! | AACATTATATAATTATAGCA+TGG | - | chr7_3:5647801-5647820 | Msa1090700:intron | 15.0% |
| !! | TACCATGTAATATATTATTG+TGG | - | chr7_3:5647655-5647674 | Msa1090700:CDS | 20.0% |
| !! | TTCCACAATAATATATTACA+TGG | + | chr7_3:5647660-5647679 | None:intergenic | 20.0% |
| !! | TCAATGTAAGAATCAATATT+TGG | - | chr7_3:5647698-5647717 | Msa1090700:CDS | 20.0% |
| !! | TACCATGTAATATATTATTG+TGG | - | chr7_3:5647655-5647674 | Msa1090700:CDS | 20.0% |
| !! | TTCCACAATAATATATTACA+TGG | + | chr7_3:5647660-5647679 | None:intergenic | 20.0% |
| !! | TCAATGTAAGAATCAATATT+TGG | - | chr7_3:5647698-5647717 | Msa1090700:CDS | 20.0% |
| AATACATAGAATTTGCAGCT+TGG | + | chr7_3:5647958-5647977 | None:intergenic | 30.0% | |
| ! | TGTATTTAGAAGCACAATGT+AGG | - | chr7_3:5647972-5647991 | Msa1090700:intron | 30.0% |
| CTCCAAAATCAACAATTTGA+AGG | - | chr7_3:5648106-5648125 | Msa1090700:CDS | 30.0% | |
| !!! | CACCTTCAAATTGTTGATTT+TGG | + | chr7_3:5648111-5648130 | None:intergenic | 30.0% |
| AATACATAGAATTTGCAGCT+TGG | + | chr7_3:5647958-5647977 | None:intergenic | 30.0% | |
| ! | TGTATTTAGAAGCACAATGT+AGG | - | chr7_3:5647972-5647991 | Msa1090700:intron | 30.0% |
| CTCCAAAATCAACAATTTGA+AGG | - | chr7_3:5648106-5648125 | Msa1090700:CDS | 30.0% | |
| !!! | CACCTTCAAATTGTTGATTT+TGG | + | chr7_3:5648111-5648130 | None:intergenic | 30.0% |
| TATGGAGAGAAAATGCAATC+AGG | + | chr7_3:5647472-5647491 | None:intergenic | 35.0% | |
| ! | GCAAATCTTTGAGGATCATT+GGG | + | chr7_3:5647502-5647521 | None:intergenic | 35.0% |
| ! | AGCAAATCTTTGAGGATCAT+TGG | + | chr7_3:5647503-5647522 | None:intergenic | 35.0% |
| TGAACAGAAGCAAATCTTTG+AGG | + | chr7_3:5647511-5647530 | None:intergenic | 35.0% | |
| AGGATTCAAGATCCTGTTTA+TGG | - | chr7_3:5647992-5648011 | Msa1090700:intron | 35.0% | |
| ATCCTGTTTATGGATGTGTT+GGG | - | chr7_3:5648002-5648021 | Msa1090700:intron | 35.0% | |
| TCAAGATACAGAAGTTGAGT+TGG | - | chr7_3:5648051-5648070 | Msa1090700:intron | 35.0% | |
| TCCATGTTGTTACTATGTAG+TGG | + | chr7_3:5648190-5648209 | None:intergenic | 35.0% | |
| AACCAATTAGGAGTTTGACT+AGG | + | chr7_3:5648226-5648245 | None:intergenic | 35.0% | |
| TATGGAGAGAAAATGCAATC+AGG | + | chr7_3:5647472-5647491 | None:intergenic | 35.0% | |
| ! | GCAAATCTTTGAGGATCATT+GGG | + | chr7_3:5647502-5647521 | None:intergenic | 35.0% |
| ! | AGCAAATCTTTGAGGATCAT+TGG | + | chr7_3:5647503-5647522 | None:intergenic | 35.0% |
| TGAACAGAAGCAAATCTTTG+AGG | + | chr7_3:5647511-5647530 | None:intergenic | 35.0% | |
| AGGATTCAAGATCCTGTTTA+TGG | - | chr7_3:5647992-5648011 | Msa1090700:intron | 35.0% | |
| ATCCTGTTTATGGATGTGTT+GGG | - | chr7_3:5648002-5648021 | Msa1090700:intron | 35.0% | |
| TCAAGATACAGAAGTTGAGT+TGG | - | chr7_3:5648051-5648070 | Msa1090700:intron | 35.0% | |
| TCCATGTTGTTACTATGTAG+TGG | + | chr7_3:5648190-5648209 | None:intergenic | 35.0% | |
| AACCAATTAGGAGTTTGACT+AGG | + | chr7_3:5648226-5648245 | None:intergenic | 35.0% | |
| CTTGCAAGAGTCAAAGAAGA+AGG | - | chr7_3:5647440-5647459 | Msa1090700:CDS | 40.0% | |
| ! | ATCTTTGAGGATCATTGGGA+GGG | + | chr7_3:5647498-5647517 | None:intergenic | 40.0% |
| ! | AATCTTTGAGGATCATTGGG+AGG | + | chr7_3:5647499-5647518 | None:intergenic | 40.0% |
| CATTGCTACCACCATAGATT+CGG | + | chr7_3:5647534-5647553 | None:intergenic | 40.0% | |
| ATCTATGGTGGTAGCAATGT+TGG | - | chr7_3:5647535-5647554 | Msa1090700:CDS | 40.0% | |
| CAATGTTGGAAAAACGCTTC+AGG | - | chr7_3:5647549-5647568 | Msa1090700:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | - | chr7_3:5648001-5648020 | Msa1090700:intron | 40.0% | |
| ATCCCAACACATCCATAAAC+AGG | + | chr7_3:5648007-5648026 | None:intergenic | 40.0% | |
| GCCACTACATAGTAACAACA+TGG | - | chr7_3:5648186-5648205 | Msa1090700:CDS | 40.0% | |
| ACAACATGGAGCAGATTCAA+TGG | - | chr7_3:5648200-5648219 | Msa1090700:CDS | 40.0% | |
| CTTGCAAGAGTCAAAGAAGA+AGG | - | chr7_3:5647440-5647459 | Msa1090700:CDS | 40.0% | |
| ! | ATCTTTGAGGATCATTGGGA+GGG | + | chr7_3:5647498-5647517 | None:intergenic | 40.0% |
| ! | AATCTTTGAGGATCATTGGG+AGG | + | chr7_3:5647499-5647518 | None:intergenic | 40.0% |
| CATTGCTACCACCATAGATT+CGG | + | chr7_3:5647534-5647553 | None:intergenic | 40.0% | |
| ATCTATGGTGGTAGCAATGT+TGG | - | chr7_3:5647535-5647554 | Msa1090700:CDS | 40.0% | |
| CAATGTTGGAAAAACGCTTC+AGG | - | chr7_3:5647549-5647568 | Msa1090700:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | - | chr7_3:5648001-5648020 | Msa1090700:intron | 40.0% | |
| ATCCCAACACATCCATAAAC+AGG | + | chr7_3:5648007-5648026 | None:intergenic | 40.0% | |
| GCCACTACATAGTAACAACA+TGG | - | chr7_3:5648186-5648205 | Msa1090700:CDS | 40.0% | |
| ACAACATGGAGCAGATTCAA+TGG | - | chr7_3:5648200-5648219 | Msa1090700:CDS | 40.0% | |
| GGAGAGAAAATGCAATCAGG+AGG | + | chr7_3:5647469-5647488 | None:intergenic | 45.0% | |
| GGATCATTGGGAGGGAAATA+TGG | + | chr7_3:5647490-5647509 | None:intergenic | 45.0% | |
| GCTTCTGTTCACCGAATCTA+TGG | - | chr7_3:5647520-5647539 | Msa1090700:CDS | 45.0% | |
| TCTGTTCACCGAATCTATGG+TGG | - | chr7_3:5647523-5647542 | Msa1090700:CDS | 45.0% | |
| GGCCTAGTCAAACTCCTAAT+TGG | - | chr7_3:5648221-5648240 | Msa1090700:CDS | 45.0% | |
| GGAGAGAAAATGCAATCAGG+AGG | + | chr7_3:5647469-5647488 | None:intergenic | 45.0% | |
| GGATCATTGGGAGGGAAATA+TGG | + | chr7_3:5647490-5647509 | None:intergenic | 45.0% | |
| GCTTCTGTTCACCGAATCTA+TGG | - | chr7_3:5647520-5647539 | Msa1090700:CDS | 45.0% | |
| TCTGTTCACCGAATCTATGG+TGG | - | chr7_3:5647523-5647542 | Msa1090700:CDS | 45.0% | |
| GGCCTAGTCAAACTCCTAAT+TGG | - | chr7_3:5648221-5648240 | Msa1090700:CDS | 45.0% | |
| !! | GCTTGGTGTCGTACATAGTG+AGG | + | chr7_3:5647941-5647960 | None:intergenic | 50.0% |
| !! | GCTTGGTGTCGTACATAGTG+AGG | + | chr7_3:5647941-5647960 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 5647418 | 5648252 | 5647418 | ID=Msa1090700;Name=Msa1090700 |
| chr7_3 | mRNA | 5647418 | 5648252 | 5647418 | ID=Msa1090700-mRNA-1;Parent=Msa1090700;Name=Msa1090700-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|157 |
| chr7_3 | exon | 5648100 | 5648252 | 5648100 | ID=Msa1090700-mRNA-1:exon:1742;Parent=Msa1090700-mRNA-1 |
| chr7_3 | exon | 5647418 | 5647738 | 5647418 | ID=Msa1090700-mRNA-1:exon:1741;Parent=Msa1090700-mRNA-1 |
| chr7_3 | CDS | 5648100 | 5648252 | 5648100 | ID=Msa1090700-mRNA-1:cds;Parent=Msa1090700-mRNA-1 |
| chr7_3 | CDS | 5647418 | 5647738 | 5647418 | ID=Msa1090700-mRNA-1:cds;Parent=Msa1090700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
