AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1090960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090960 MtrunA17_Chr7g0214071 91.051 257 10 6 1 246 1 255 1.89e-152 424
Msa1090960 MtrunA17_Chr8g0385991 61.017 177 57 4 1 167 1 175 1.42e-73 223
Msa1090960 MtrunA17_Chr3g0131911 53.023 215 76 5 1 203 1 202 4.57e-68 210
Msa1090960 MtrunA17_Chr4g0047841 56.000 175 48 3 14 159 14 188 2.51e-59 191
Msa1090960 MtrunA17_Chr2g0318101 54.913 173 61 3 1 156 1 173 2.39e-58 189
Msa1090960 MtrunA17_Chr5g0417791 58.228 158 54 3 13 160 1 156 3.13e-58 185
Msa1090960 MtrunA17_Chr7g0252971 51.053 190 69 6 12 183 5 188 5.28e-58 187
Msa1090960 MtrunA17_Chr4g0042561 59.119 159 53 4 15 163 9 165 5.30e-58 185
Msa1090960 MtrunA17_Chr7g0263931 49.733 187 82 4 12 186 8 194 1.01e-56 184
Msa1090960 MtrunA17_Chr3g0124761 57.595 158 55 3 12 160 4 158 1.13e-54 177
Msa1090960 MtrunA17_Chr2g0326361 54.605 152 59 2 15 156 14 165 3.71e-54 177
Msa1090960 MtrunA17_Chr7g0243371 88.636 88 10 0 60 147 12 99 5.61e-54 170
Msa1090960 MtrunA17_Chr3g0109821 57.396 169 60 6 13 171 4 170 1.46e-53 183
Msa1090960 MtrunA17_Chr2g0309891 52.601 173 65 5 13 172 4 172 5.93e-53 174
Msa1090960 MtrunA17_Chr3g0139331 51.899 158 72 2 12 165 8 165 7.59e-53 174
Msa1090960 MtrunA17_Chr4g0018391 54.902 153 60 4 15 160 7 157 1.30e-52 174
Msa1090960 MtrunA17_Chr5g0433781 43.750 256 108 9 13 246 4 245 1.37e-52 180
Msa1090960 MtrunA17_Chr4g0060931 52.410 166 69 4 8 165 10 173 1.37e-52 174
Msa1090960 MtrunA17_Chr1g0147421 50.838 179 77 4 12 185 24 196 1.69e-52 174
Msa1090960 MtrunA17_Chr2g0309331 50.000 162 73 3 6 160 1 161 1.60e-51 171
Msa1090960 MtrunA17_Chr3g0091921 50.595 168 73 3 6 165 7 172 1.85e-51 169
Msa1090960 MtrunA17_Chr4g0017921 56.209 153 57 5 15 160 8 157 2.16e-51 171
Msa1090960 MtrunA17_Chr2g0316971 50.625 160 71 2 12 163 20 179 2.92e-51 171
Msa1090960 MtrunA17_Chr2g0318081 54.658 161 65 3 11 165 12 170 4.71e-51 170
Msa1090960 MtrunA17_Chr8g0384721 51.111 180 71 5 11 179 3 176 5.21e-51 167
Msa1090960 MtrunA17_Chr6g0481091 41.126 231 103 6 13 235 4 209 5.29e-51 166
Msa1090960 MtrunA17_Chr8g0372121 50.299 167 74 4 15 174 6 170 6.09e-51 168
Msa1090960 MtrunA17_Chr5g0398971 51.948 154 65 3 15 160 7 159 1.18e-50 169
Msa1090960 MtrunA17_Chr5g0405211 47.312 186 86 5 15 193 8 188 1.55e-50 168
Msa1090960 MtrunA17_Chr1g0200561 53.378 148 60 3 15 155 19 164 1.70e-50 168
Msa1090960 MtrunA17_Chr6g0484441 43.128 211 106 5 12 210 2 210 2.08e-50 167
Msa1090960 MtrunA17_Chr4g0056541 50.307 163 72 3 14 169 6 166 4.42e-50 167
Msa1090960 MtrunA17_Chr1g0183741 52.414 145 65 2 15 156 10 153 6.60e-50 164
Msa1090960 MtrunA17_Chr6g0453451 49.102 167 75 4 7 165 12 176 8.35e-50 166
Msa1090960 MtrunA17_Chr8g0359921 56.209 153 57 4 12 156 11 161 2.16e-49 165
Msa1090960 MtrunA17_Chr3g0130731 54.375 160 59 4 11 160 3 158 6.35e-49 162
Msa1090960 MtrunA17_Chr7g0261411 51.724 145 66 2 15 156 10 153 3.76e-48 160
Msa1090960 MtrunA17_Chr6g0461661 48.125 160 75 2 8 159 11 170 6.02e-48 162
Msa1090960 MtrunA17_Chr5g0417001 47.486 179 79 3 1 165 1 178 9.40e-48 162
Msa1090960 MtrunA17_Chr8g0346001 45.930 172 73 3 7 160 7 176 2.14e-47 162
Msa1090960 MtrunA17_Chr5g0442771 49.457 184 75 6 8 175 12 193 2.85e-47 159
Msa1090960 MtrunA17_Chr8g0361731 45.055 182 84 3 1 167 1 181 2.87e-47 161
Msa1090960 MtrunA17_Chr5g0400461 43.878 196 95 4 11 192 2 196 4.58e-47 159
Msa1090960 MtrunA17_Chr3g0144271 51.613 155 67 4 8 158 16 166 1.20e-46 160
Msa1090960 MtrunA17_Chr7g0253011 51.948 154 64 4 13 156 15 168 1.21e-46 159
Msa1090960 MtrunA17_Chr4g0054791 51.656 151 64 3 15 156 6 156 2.23e-46 157
Msa1090960 MtrunA17_Chr2g0312321 39.676 247 120 9 12 247 8 236 3.08e-46 156
Msa1090960 MtrunA17_Chr2g0311651 42.857 203 94 5 10 191 16 217 2.68e-45 154
Msa1090960 MtrunA17_Chr7g0217721 41.860 215 96 6 9 202 13 219 2.97e-45 155
Msa1090960 MtrunA17_Chr2g0311661 46.857 175 71 5 6 160 13 185 8.14e-45 152
Msa1090960 MtrunA17_Chr7g0217711 54.074 135 55 3 9 139 13 144 1.40e-44 148
Msa1090960 MtrunA17_Chr3g0130101 47.619 168 72 5 17 173 9 171 2.32e-44 152
Msa1090960 MtrunA17_Chr3g0128151 45.055 182 80 5 15 188 22 191 1.57e-43 155
Msa1090960 MtrunA17_Chr6g0453131 46.199 171 76 4 1 156 1 170 1.61e-43 151
Msa1090960 MtrunA17_Chr5g0428991 44.385 187 84 5 14 192 24 198 6.20e-43 154
Msa1090960 MtrunA17_Chr3g0092671 48.193 166 74 5 17 173 7 169 2.26e-42 151
Msa1090960 MtrunA17_Chr3g0128111 47.619 147 67 3 18 156 45 189 2.38e-42 144
Msa1090960 MtrunA17_Chr1g0197351 50.296 169 66 4 15 168 42 207 5.70e-42 149
Msa1090960 MtrunA17_Chr1g0201021 48.214 168 71 5 17 173 21 183 1.04e-41 149
Msa1090960 MtrunA17_Chr1g0197361 46.667 165 78 4 17 173 10 172 1.32e-41 149
Msa1090960 MtrunA17_Chr8g0364791 44.118 170 81 4 14 173 5 170 7.30e-41 145
Msa1090960 MtrunA17_Chr4g0076731 49.333 150 70 4 17 162 56 203 6.05e-39 140
Msa1090960 MtrunA17_Chr8g0384201 42.941 170 83 4 14 173 5 170 9.05e-39 140
Msa1090960 MtrunA17_Chr8g0345671 46.622 148 70 4 15 156 11 155 1.66e-38 138
Msa1090960 MtrunA17_Chr4g0038751 43.558 163 83 4 1 159 4 161 4.17e-37 132
Msa1090960 MtrunA17_Chr4g0050701 41.830 153 71 3 15 156 11 156 1.53e-35 125
Msa1090960 MtrunA17_Chr8g0345691 41.611 149 78 4 14 156 11 156 3.82e-33 124
Msa1090960 MtrunA17_Chr2g0321631 41.509 159 75 6 16 158 5 161 2.20e-30 113
Msa1090960 MtrunA17_Chr4g0026141 41.139 158 78 6 15 158 5 161 9.38e-30 112
Msa1090960 MtrunA17_Chr3g0113001 49.180 122 54 3 50 165 3 122 1.10e-29 112
Msa1090960 MtrunA17_Chr2g0321741 45.522 134 56 5 46 175 23 143 1.97e-29 113
Msa1090960 MtrunA17_Chr8g0384351 40.506 158 72 6 13 167 8 146 5.82e-29 108
Msa1090960 MtrunA17_Chr8g0345711 42.636 129 67 3 15 137 12 139 2.18e-27 103
Msa1090960 MtrunA17_Chr8g0345731 41.667 132 67 4 15 137 24 154 8.39e-27 102
Msa1090960 MtrunA17_Chr7g0266701 32.243 214 104 9 15 192 4 212 9.81e-27 103
Msa1090960 MtrunA17_Chr8g0345721 36.774 155 62 3 18 137 38 191 1.10e-25 100
Msa1090960 MtrunA17_Chr3g0113031 50.505 99 34 3 77 165 5 98 2.93e-25 100
Msa1090960 MtrunA17_Chr8g0345741 40.833 120 58 4 28 138 4 119 2.87e-23 92.4
Msa1090960 MtrunA17_Chr8g0345701 37.419 155 69 6 15 149 7 153 4.90e-23 92.4
Msa1090960 MtrunA17_Chr3g0130321 33.735 166 76 7 13 156 5 158 1.28e-18 81.3
Msa1090960 MtrunA17_Chr7g0251661 34.586 133 78 6 10 137 5 133 8.89e-18 77.8
Msa1090960 MtrunA17_Chr7g0251651 35.766 137 78 6 6 137 10 141 1.36e-17 78.2
Msa1090960 MtrunA17_Chr7g0251671 29.940 167 104 7 10 171 5 163 1.16e-16 75.1
Msa1090960 MtrunA17_Chr1g0168571 34.722 144 81 5 23 155 13 154 3.23e-16 76.6
Msa1090960 MtrunA17_Chr3g0113011 50.000 56 28 0 9 64 13 68 3.21e-13 63.2
Msa1090960 MtrunA17_Chr2g0282871 32.653 147 71 8 15 139 53 193 1.39e-12 66.2
Msa1090960 MtrunA17_Chr4g0040541 31.973 147 77 7 15 141 48 191 2.23e-12 65.5
Msa1090960 MtrunA17_Chr3g0113041 48.214 56 29 0 9 64 13 68 1.96e-11 58.5
Msa1090960 MtrunA17_Chr8g0367761 30.822 146 79 7 15 141 68 210 2.37e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090960 AT5G13180.1 56.225 249 92 6 1 235 1 246 1.34e-91 270
Msa1090960 AT2G33480.2 72.840 162 41 2 1 161 1 160 2.59e-85 255
Msa1090960 AT2G33480.1 71.951 164 41 2 1 161 1 162 4.46e-85 254
Msa1090960 AT1G61110.1 56.425 179 58 5 11 171 12 188 1.51e-58 189
Msa1090960 AT3G04070.2 56.287 167 57 4 6 156 1 167 8.33e-58 187
Msa1090960 AT1G69490.1 59.006 161 53 4 15 165 9 166 1.11e-57 184
Msa1090960 AT1G77450.1 55.758 165 59 4 6 160 1 161 5.95e-56 180
Msa1090960 AT3G04070.1 45.726 234 97 6 6 233 1 210 7.25e-56 182
Msa1090960 AT5G61430.1 54.762 168 66 5 6 165 7 172 1.45e-55 181
Msa1090960 AT5G39610.1 44.749 219 103 5 4 207 9 224 2.53e-55 179
Msa1090960 AT5G07680.1 54.321 162 64 4 12 165 14 173 9.44e-55 179
Msa1090960 AT5G07680.2 55.346 159 61 4 15 165 3 159 1.43e-54 178
Msa1090960 AT3G15510.1 57.595 158 50 3 19 159 21 178 1.45e-54 179
Msa1090960 AT1G65910.1 40.625 256 118 8 13 245 4 248 2.57e-54 185
Msa1090960 AT2G24430.2 53.086 162 71 2 9 165 10 171 2.05e-53 175
Msa1090960 AT2G24430.1 53.086 162 71 2 9 165 10 171 2.05e-53 175
Msa1090960 AT5G17260.1 54.902 153 58 3 13 156 4 154 3.36e-53 179
Msa1090960 AT4G27410.2 52.096 167 72 3 12 172 11 175 4.19e-53 174
Msa1090960 AT3G03200.1 47.449 196 88 5 13 198 4 194 5.55e-53 178
Msa1090960 AT1G33280.1 53.289 152 63 2 15 160 8 157 6.96e-53 173
Msa1090960 AT1G12260.2 52.532 158 66 4 15 165 7 162 2.14e-52 173
Msa1090960 AT3G18400.1 53.459 159 67 4 12 165 2 158 2.21e-52 172
Msa1090960 AT1G54330.1 58.278 151 52 3 13 156 4 150 3.11e-52 172
Msa1090960 AT4G10350.1 54.194 155 60 4 15 160 9 161 3.77e-52 172
Msa1090960 AT1G12260.1 52.532 158 66 4 15 165 7 162 8.06e-52 173
Msa1090960 AT5G46590.1 51.899 158 66 3 11 159 2 158 9.17e-52 170
Msa1090960 AT3G15170.1 51.923 156 67 3 12 159 17 172 9.24e-52 171
Msa1090960 AT1G76420.1 52.532 158 67 4 15 166 22 177 1.02e-51 171
Msa1090960 AT1G62700.1 52.353 170 70 5 14 174 6 173 1.07e-51 173
Msa1090960 AT1G62700.2 52.353 170 70 5 14 174 6 173 1.07e-51 173
Msa1090960 AT3G04060.1 55.263 152 59 4 13 156 18 168 2.48e-51 170
Msa1090960 AT2G18060.3 46.078 204 91 7 15 210 9 201 4.56e-51 171
Msa1090960 AT2G18060.1 46.078 204 91 7 15 210 9 201 4.56e-51 171
Msa1090960 AT5G53950.1 52.941 153 64 2 15 159 17 169 5.25e-51 171
Msa1090960 AT1G01720.1 53.939 165 63 4 13 167 5 166 5.68e-51 168
Msa1090960 AT5G18270.2 53.947 152 61 3 13 156 19 169 7.10e-51 169
Msa1090960 AT5G66300.1 52.410 166 67 5 4 160 1 163 8.24e-51 167
Msa1090960 AT5G18270.1 53.947 152 61 3 13 156 19 169 1.46e-50 168
Msa1090960 AT4G27410.3 47.283 184 72 3 12 172 11 192 1.89e-50 167
Msa1090960 AT5G62380.2 54.140 157 59 6 13 160 5 157 2.36e-50 168
Msa1090960 AT5G62380.1 54.140 157 59 6 13 160 5 157 2.36e-50 168
Msa1090960 AT3G17730.1 48.000 175 78 5 13 177 4 175 3.63e-50 164
Msa1090960 AT1G52890.1 52.500 160 68 3 12 165 11 168 4.46e-50 166
Msa1090960 AT5G63790.1 47.115 208 87 6 2 197 37 233 6.35e-50 166
Msa1090960 AT4G36160.1 52.147 163 67 5 15 168 10 170 6.46e-50 168
Msa1090960 AT4G36160.3 52.147 163 67 5 15 168 10 170 6.46e-50 168
Msa1090960 AT4G36160.2 50.920 163 69 4 15 168 14 174 6.71e-50 168
Msa1090960 AT5G63790.2 46.860 207 89 5 2 197 47 243 8.30e-50 166
Msa1090960 AT1G71930.2 52.027 148 62 3 15 155 9 154 2.34e-49 165
Msa1090960 AT1G71930.1 52.027 148 62 3 15 155 9 154 2.34e-49 165
Msa1090960 AT1G79580.3 50.000 160 73 2 7 160 9 167 2.61e-49 166
Msa1090960 AT1G79580.5 50.000 160 73 2 7 160 9 167 2.61e-49 166
Msa1090960 AT1G79580.4 50.000 160 73 2 7 160 9 167 2.61e-49 166
Msa1090960 AT1G79580.2 50.000 160 73 2 7 160 9 167 2.61e-49 166
Msa1090960 AT1G79580.1 50.000 160 73 2 7 160 9 167 2.61e-49 166
Msa1090960 AT2G46770.1 40.088 227 111 5 1 205 2 225 4.26e-49 165
Msa1090960 AT3G12977.1 50.625 160 70 4 12 164 15 172 4.84e-49 163
Msa1090960 AT1G52880.1 54.321 162 58 3 19 164 21 182 7.41e-49 164
Msa1090960 AT3G29035.1 57.353 136 53 2 7 139 16 149 7.60e-49 163
Msa1090960 AT1G33060.1 45.408 196 85 5 15 197 24 210 1.15e-48 170
Msa1090960 AT1G33060.2 45.408 196 85 5 15 197 24 210 1.37e-48 169
Msa1090960 AT4G17980.1 49.057 159 71 2 11 159 2 160 1.76e-48 161
Msa1090960 AT4G17980.2 49.057 159 71 2 11 159 2 160 2.16e-48 161
Msa1090960 AT3G15500.1 51.875 160 69 3 12 165 11 168 2.86e-48 162
Msa1090960 AT3G10500.1 50.299 167 73 3 15 173 9 173 5.27e-48 166
Msa1090960 AT3G10480.1 51.852 162 67 3 15 167 27 186 1.05e-47 164
Msa1090960 AT3G10490.1 51.235 162 68 3 15 167 27 186 1.06e-47 158
Msa1090960 AT5G46590.2 51.034 145 65 2 11 150 2 145 1.18e-47 159
Msa1090960 AT5G08790.1 54.037 161 58 5 12 160 4 160 1.26e-47 159
Msa1090960 AT5G04410.1 51.497 167 71 3 15 173 9 173 1.39e-47 166
Msa1090960 AT4G35580.3 44.186 215 90 6 15 218 9 204 3.38e-47 164
Msa1090960 AT4G35580.2 44.186 215 90 6 15 218 9 204 3.47e-47 164
Msa1090960 AT4G35580.1 44.186 215 90 6 15 218 9 204 4.02e-47 163
Msa1090960 AT3G61910.1 43.956 182 77 6 7 166 3 181 8.32e-47 159
Msa1090960 AT3G10480.2 51.553 161 68 3 15 167 27 185 1.39e-46 160
Msa1090960 AT2G33480.3 68.571 105 28 2 60 161 3 105 1.59e-46 154
Msa1090960 AT1G56010.2 47.239 163 74 4 12 164 16 176 2.43e-46 157
Msa1090960 AT1G32770.1 36.800 250 130 6 10 240 11 251 3.81e-46 157
Msa1090960 AT3G10490.2 51.235 162 68 3 15 167 27 186 6.30e-46 159
Msa1090960 AT5G39820.1 39.827 231 107 6 2 205 8 233 7.48e-46 156
Msa1090960 AT1G32510.1 39.130 230 117 5 15 222 6 234 6.23e-44 150
Msa1090960 AT4G28530.1 46.707 167 69 4 14 161 9 174 1.74e-43 150
Msa1090960 AT3G10480.3 43.077 195 67 3 15 167 27 219 9.04e-43 152
Msa1090960 AT1G34180.3 48.795 166 73 4 17 173 18 180 1.65e-42 150
Msa1090960 AT1G26870.1 47.771 157 67 3 15 156 16 172 1.71e-42 149
Msa1090960 AT1G34190.1 49.102 167 71 5 17 173 18 180 1.71e-42 152
Msa1090960 AT1G34180.1 48.795 166 73 4 17 173 18 180 1.00e-41 150
Msa1090960 AT1G34180.4 45.506 178 73 4 17 173 18 192 2.06e-41 147
Msa1090960 AT3G49530.2 46.000 150 72 3 15 156 13 161 5.41e-41 145
Msa1090960 AT3G12910.1 42.925 212 88 9 17 198 23 231 5.46e-41 142
Msa1090960 AT3G49530.1 46.000 150 72 3 15 156 13 161 7.31e-41 146
Msa1090960 AT1G34180.2 45.506 178 73 4 17 173 18 192 9.46e-41 147
Msa1090960 AT2G17040.1 41.837 196 99 6 17 208 8 192 1.18e-40 141
Msa1090960 AT2G43000.1 47.771 157 72 5 17 166 20 173 1.55e-40 140
Msa1090960 AT5G64060.1 43.860 171 86 3 11 173 2 170 2.61e-40 142
Msa1090960 AT5G24590.2 46.154 169 72 5 15 169 13 176 2.73e-40 144
Msa1090960 AT5G09330.5 42.640 197 99 5 11 196 2 195 3.39e-40 144
Msa1090960 AT5G09330.2 42.640 197 99 5 11 196 2 195 3.39e-40 144
Msa1090960 AT5G09330.4 42.640 197 99 5 11 196 2 195 3.39e-40 144
Msa1090960 AT5G09330.3 42.640 197 99 5 11 196 2 195 3.39e-40 144
Msa1090960 AT5G09330.1 42.640 197 99 5 11 196 2 195 3.39e-40 144
Msa1090960 AT2G02450.1 49.333 150 70 4 17 162 53 200 6.80e-40 142
Msa1090960 AT2G02450.2 49.333 150 70 4 17 162 53 200 1.09e-39 142
Msa1090960 AT5G22290.1 36.406 217 128 4 17 228 23 234 1.08e-38 137
Msa1090960 AT2G27300.1 44.521 146 71 3 15 156 14 153 1.02e-36 132
Msa1090960 AT3G44290.2 42.236 161 80 4 17 173 16 167 1.59e-36 129
Msa1090960 AT5G04395.1 44.828 145 63 2 12 139 25 169 9.51e-36 125
Msa1090960 AT3G44290.1 42.236 161 80 4 17 173 16 167 1.36e-35 129
Msa1090960 AT4G10350.2 55.556 99 39 2 65 160 18 114 6.12e-34 124
Msa1090960 AT5G61430.2 55.660 106 40 3 65 165 6 109 5.02e-33 121
Msa1090960 AT1G32870.2 45.000 180 83 6 4 173 1 174 1.69e-32 124
Msa1090960 AT1G32870.1 45.000 180 83 6 4 173 1 174 1.81e-32 124
Msa1090960 AT1G32870.3 45.000 180 83 6 4 173 37 210 3.24e-32 124
Msa1090960 AT5G64530.1 39.877 163 68 4 13 156 1 152 3.67e-32 116
Msa1090960 AT5G64530.2 44.961 129 58 3 13 139 1 118 7.32e-32 115
Msa1090960 AT3G12977.2 54.369 103 41 3 66 164 19 119 1.56e-30 113
Msa1090960 AT5G14000.1 36.416 173 103 4 1 170 1 169 1.27e-29 110
Msa1090960 AT1G02230.1 42.105 152 76 6 16 159 4 151 2.16e-29 113
Msa1090960 AT1G56010.1 48.571 105 46 2 66 164 7 109 4.87e-29 110
Msa1090960 AT5G14000.2 38.312 154 90 3 1 151 1 152 5.67e-29 107
Msa1090960 AT4G01550.1 36.813 182 99 5 18 192 7 179 1.07e-28 113
Msa1090960 AT5G50820.1 39.860 143 79 3 5 145 7 144 6.68e-28 105
Msa1090960 AT1G02250.1 42.105 152 76 5 16 159 4 151 9.67e-28 109
Msa1090960 AT4G01520.1 38.012 171 94 6 16 178 5 171 1.42e-26 105
Msa1090960 AT4G01540.4 38.462 169 92 6 18 178 7 171 2.47e-26 105
Msa1090960 AT4G01540.3 38.462 169 92 6 18 178 7 171 3.62e-26 105
Msa1090960 AT4G01540.2 38.462 169 92 6 18 178 7 171 3.80e-26 105
Msa1090960 AT4G01540.1 40.000 150 80 5 18 159 7 154 3.87e-26 106
Msa1090960 AT5G22380.1 38.462 156 79 5 18 158 8 161 2.46e-24 97.4
Msa1090960 AT3G44350.2 37.975 158 83 5 15 159 5 160 3.85e-24 97.1
Msa1090960 AT3G04420.2 38.411 151 82 5 16 159 4 150 8.75e-24 97.4
Msa1090960 AT3G04420.1 38.411 151 82 5 16 159 4 150 1.00e-23 98.2
Msa1090960 AT3G44350.1 39.568 139 73 4 15 144 5 141 5.56e-23 92.0
Msa1090960 AT4G28530.2 40.310 129 58 3 14 123 9 137 7.74e-23 95.1
Msa1090960 AT1G02220.1 39.073 151 72 6 16 156 4 144 1.34e-21 92.8
Msa1090960 AT2G18060.2 41.463 123 59 5 90 210 2 113 8.96e-21 89.0
Msa1090960 AT3G10490.4 49.425 87 38 2 85 167 2 86 4.23e-20 88.2
Msa1090960 AT3G10490.3 49.425 87 38 2 85 167 2 86 4.23e-20 88.2
Msa1090960 AT2G43000.2 46.809 94 43 4 77 166 5 95 1.92e-18 80.9
Msa1090960 AT1G01010.1 34.810 158 80 7 18 159 6 156 1.35e-17 81.6
Msa1090960 AT5G22290.2 34.532 139 85 3 91 228 2 135 6.98e-16 75.1
Msa1090960 AT3G55210.1 33.143 175 85 8 15 166 11 176 9.17e-16 75.1
Msa1090960 AT3G56530.1 35.032 157 87 7 12 158 49 200 1.03e-14 72.8
Msa1090960 AT5G14000.3 50.000 62 31 0 1 62 1 62 2.36e-13 68.2
Msa1090960 AT1G28470.1 34.014 147 75 9 15 142 77 220 2.86e-12 65.9
Msa1090960 AT4G29230.2 32.468 154 74 8 13 139 45 195 3.85e-12 65.9
Msa1090960 AT4G29230.1 32.468 154 74 8 13 139 46 196 4.00e-12 65.9
Msa1090960 AT4G29230.3 32.468 154 74 8 13 139 46 196 5.36e-12 65.5
Msa1090960 AT5G56620.3 30.573 157 76 7 13 139 41 194 1.38e-11 64.3
Msa1090960 AT5G56620.2 30.573 157 76 7 13 139 41 194 1.45e-11 63.9
Msa1090960 AT5G56620.1 30.573 157 76 7 13 139 41 194 1.94e-11 63.5
Msa1090960 AT3G04430.1 31.206 141 82 4 21 147 6 145 4.65e-11 60.8

Find 90 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATCCTCATCCTCTTT+TGG 0.174059 7_3:-5949875 Msa1090960:CDS
TCTTAATGCCGACCTCATTT+TGG 0.179661 7_3:+5949758 None:intergenic
TCGGTTCCCATTTGGGTATT+TGG 0.189837 7_3:+5950458 None:intergenic
GTGAAGGAAGGAAGAGAAAA+AGG 0.209589 7_3:+5951025 None:intergenic
CTGTTAGATCGGTTCCCATT+TGG 0.268180 7_3:+5950450 None:intergenic
ATTTGGATTCTTATATTAGA+TGG 0.293501 7_3:+5949667 None:intergenic
ATAAAAGGAAGGGGAGGGAG+GGG 0.307261 7_3:+5949834 None:intergenic
TAGACAGACCTAATAATAAA+AGG 0.323180 7_3:+5949819 None:intergenic
TGTTAGATCGGTTCCCATTT+GGG 0.328133 7_3:+5950451 None:intergenic
CACTTACAGAATCTCTTAAA+AGG 0.329098 7_3:+5949623 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 7_3:-5950428 Msa1090960:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 7_3:-5950706 Msa1090960:CDS
CCAAGCAGTTGCAGCAACTT+TGG 0.391601 7_3:-5950070 Msa1090960:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 7_3:-5950705 Msa1090960:CDS
GAAAGGAAAGGAAAGGAAAA+GGG 0.399374 7_3:+5951097 None:intergenic
TAATAAAAGGAAGGGGAGGG+AGG 0.405142 7_3:+5949832 None:intergenic
AGAAAGGAAAGGAAAGGAAA+AGG 0.406342 7_3:+5951096 None:intergenic
CAGTGGAATCACAAATGAAT+TGG 0.418146 7_3:-5949930 Msa1090960:CDS
TTAAGCATTATTTCCAAAAG+AGG 0.440986 7_3:+5949862 None:intergenic
TAAAAGGAAGGGGAGGGAGG+GGG 0.442503 7_3:+5949835 None:intergenic
AAAGAAGCCAAATACCCAAA+TGG 0.451382 7_3:-5950465 Msa1090960:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 7_3:-5950417 Msa1090960:CDS
TCAAAGAGTCATGAAGTTGT+TGG 0.455914 7_3:-5950372 Msa1090960:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 7_3:+5950716 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 7_3:+5950724 None:intergenic
TTTCTATGATTTCTTGGCAC+AGG 0.468739 7_3:-5949993 Msa1090960:CDS
TTGAAATGATAAAGAAAGAA+AGG 0.477487 7_3:+5951080 None:intergenic
CTTCATCAGTTGGATGGAAA+CGG 0.481185 7_3:+5950801 None:intergenic
AAGAAGCCAAATACCCAAAT+GGG 0.481949 7_3:-5950464 Msa1090960:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 7_3:-5950265 Msa1090960:intron
GAAAGTGAAAAGAGAGAGAA+GGG 0.488212 7_3:-5951245 Msa1090960:five_prime_UTR
AATAAAAGGAAGGGGAGGGA+GGG 0.488281 7_3:+5949833 None:intergenic
CCAAAGTTGCTGCAACTGCT+TGG 0.489565 7_3:+5950070 None:intergenic
ACAACAAGTTCTTCATCAGT+TGG 0.490523 7_3:+5950791 None:intergenic
CTCAAATTCAAGTTCAAAAG+TGG 0.493719 7_3:-5950020 Msa1090960:CDS
TTTGTGATTCCACTGCTAGC+TGG 0.494748 7_3:+5949938 None:intergenic
GAATAAAGAAAGGTGAAGGA+AGG 0.504180 7_3:+5951013 None:intergenic
ATTATTTCCAAAAGAGGATG+AGG 0.507684 7_3:+5949868 None:intergenic
CGACATTTGTTTGAGTTGAG+TGG 0.507813 7_3:+5951206 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.510410 7_3:+5950738 None:intergenic
CAAGTTCTTCATCAGTTGGA+TGG 0.512113 7_3:+5950795 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 7_3:+5950271 None:intergenic
GAAAGGAAAGGAAAAGGGCA+TGG 0.521133 7_3:+5951102 None:intergenic
ACTGCTAGCTGGTGAGGAGG+AGG 0.524725 7_3:+5949949 None:intergenic
ATCTCAAATGTCCCAAAATG+AGG 0.524855 7_3:-5949770 Msa1090960:three_prime_UTR
TGAAAGTGAAAAGAGAGAGA+AGG 0.525592 7_3:-5951246 Msa1090960:five_prime_UTR
AATAGAATAAAGAAAGGTGA+AGG 0.531185 7_3:+5951009 None:intergenic
AAGTGTATGTTTGATATCAC+TGG 0.531990 7_3:-5949605 Msa1090960:three_prime_UTR
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 7_3:+5950439 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 7_3:+5950737 None:intergenic
AAAGAAAGAAAGGAAAGGAA+AGG 0.541538 7_3:+5951090 None:intergenic
GAATAGAATAGAATAAAGAA+AGG 0.542048 7_3:+5951003 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 7_3:+5950731 None:intergenic
CAGACCTAATAATAAAAGGA+AGG 0.543501 7_3:+5949823 None:intergenic
TACAGAATCTCTTAAAAGGA+GGG 0.547157 7_3:+5949627 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 7_3:+5950263 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 7_3:-5950311 Msa1090960:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 7_3:+5950254 None:intergenic
GTTGGATGGAAACGGAAACC+TGG 0.549587 7_3:+5950809 None:intergenic
TGTTCAATACTTGAAGCGTA+AGG 0.550952 7_3:-5950771 Msa1090960:CDS
AGACCTAATAATAAAAGGAA+GGG 0.556819 7_3:+5949824 None:intergenic
TCTAACAGAGCTACAAACTC+TGG 0.560803 7_3:-5950435 Msa1090960:CDS
TTTCCAAAAGAGGATGAGGA+TGG 0.565330 7_3:+5949872 None:intergenic
TTACAGAATCTCTTAAAAGG+AGG 0.569875 7_3:+5949626 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 7_3:-5950695 Msa1090960:intron
GACCTAATAATAAAAGGAAG+GGG 0.571777 7_3:+5949825 None:intergenic
GATTCCACTGCTAGCTGGTG+AGG 0.572585 7_3:+5949943 None:intergenic
AAATTCAAGTTCAAAAGTGG+TGG 0.574345 7_3:-5950017 Msa1090960:CDS
TCCTCCTCACCAGCTAGCAG+TGG 0.575561 7_3:-5949947 Msa1090960:CDS
TTTGTCGCATATCTCTGAAG+AGG 0.578387 7_3:-5950129 Msa1090960:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 7_3:-5950327 Msa1090960:CDS
CTAATAATAAAAGGAAGGGG+AGG 0.584791 7_3:+5949828 None:intergenic
ACAGAATCTCTTAAAAGGAG+GGG 0.595413 7_3:+5949628 None:intergenic
ATGATAAAGAAAGAAAGGAA+AGG 0.603952 7_3:+5951085 None:intergenic
TCCACTGCTAGCTGGTGAGG+AGG 0.609090 7_3:+5949946 None:intergenic
CGCATATCTCTGAAGAGGAG+AGG 0.612885 7_3:-5950124 Msa1090960:CDS
TACATACCAGGTAAATCCCA+AGG 0.614952 7_3:+5950689 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 7_3:+5950315 None:intergenic
CAAATGTCCCAAAATGAGGT+CGG 0.618561 7_3:-5949766 Msa1090960:three_prime_UTR
GAACTTGTTTACCACACGAG+TGG 0.627379 7_3:-5950925 Msa1090960:five_prime_UTR
GGTGAAGTGAGATTGCCACC+AGG 0.631641 7_3:-5950827 Msa1090960:CDS
TAATAATAAAAGGAAGGGGA+GGG 0.640264 7_3:+5949829 None:intergenic
TCACTGGTGTGTCACAATCA+TGG 0.647386 7_3:-5949589 Msa1090960:three_prime_UTR
CAGTTGCAGCAACTTTGGTG+AGG 0.652051 7_3:-5950065 Msa1090960:CDS
ATATCTCTGAAGAGGAGAGG+TGG 0.663298 7_3:-5950121 Msa1090960:CDS
TAGGTGATATGGAACAAGAG+AGG 0.664397 7_3:-5950503 Msa1090960:CDS
AAATGTCAAAGCCACTCGTG+TGG 0.666435 7_3:+5950914 None:intergenic
ATGGGTCAATGAGTCTGACA+AGG 0.679300 7_3:+5951161 None:intergenic
CAATCAGTTCTTGAACCATG+AGG 0.707588 7_3:+5950312 None:intergenic
GGATGGAAACGGAAACCTGG+TGG 0.721884 7_3:+5950812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAATATTAATATGAA+TGG - chr7_3:5950576-5950595 Msa1090960:intron 10.0%
!! TGAATTAATATTAATATGAA+TGG - chr7_3:5950576-5950595 Msa1090960:intron 10.0%
!! ATAAAAGAAAAGAAAAGAAA+AGG + chr7_3:5950100-5950119 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG - chr7_3:5950541-5950560 Msa1090960:intron 15.0%
!! AATATTAATATGAATGGAAT+TGG - chr7_3:5950582-5950601 Msa1090960:intron 15.0%
!! ATATTAATATGAATGGAATT+GGG - chr7_3:5950583-5950602 Msa1090960:intron 15.0%
!!! GAAAATAAAGAATTTTCATT+TGG + chr7_3:5951116-5951135 None:intergenic 15.0%
!! ATAAAAGAAAAGAAAAGAAA+AGG + chr7_3:5950100-5950119 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG - chr7_3:5950541-5950560 Msa1090960:intron 15.0%
!! AATATTAATATGAATGGAAT+TGG - chr7_3:5950582-5950601 Msa1090960:intron 15.0%
!! ATATTAATATGAATGGAATT+GGG - chr7_3:5950583-5950602 Msa1090960:intron 15.0%
!!! GAAAATAAAGAATTTTCATT+TGG + chr7_3:5951116-5951135 None:intergenic 15.0%
!! TTGAAATGATAAAGAAAGAA+AGG + chr7_3:5949686-5949705 None:intergenic 20.0%
!! GAATAGAATAGAATAAAGAA+AGG + chr7_3:5949763-5949782 None:intergenic 20.0%
!! AAAAGAAAAAGAAGATAAGA+TGG - chr7_3:5949887-5949906 Msa1090960:CDS 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG - chr7_3:5950241-5950260 Msa1090960:intron 20.0%
!! ATTTGTTTGTAATTTAAAGG+TGG - chr7_3:5950544-5950563 Msa1090960:intron 20.0%
!! ATTTGGATTCTTATATTAGA+TGG + chr7_3:5951099-5951118 None:intergenic 20.0%
!! TTGAAATGATAAAGAAAGAA+AGG + chr7_3:5949686-5949705 None:intergenic 20.0%
!! GAATAGAATAGAATAAAGAA+AGG + chr7_3:5949763-5949782 None:intergenic 20.0%
!! AAAAGAAAAAGAAGATAAGA+TGG - chr7_3:5949887-5949906 Msa1090960:CDS 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG - chr7_3:5950241-5950260 Msa1090960:intron 20.0%
!! ATTTGTTTGTAATTTAAAGG+TGG - chr7_3:5950544-5950563 Msa1090960:intron 20.0%
!! ATTTGGATTCTTATATTAGA+TGG + chr7_3:5951099-5951118 None:intergenic 20.0%
!! GTGTCTTCTTTTATAGTAAT+GGG + chr7_3:5949623-5949642 None:intergenic 25.0%
!! TGTGTCTTCTTTTATAGTAA+TGG + chr7_3:5949624-5949643 None:intergenic 25.0%
! ATGATAAAGAAAGAAAGGAA+AGG + chr7_3:5949681-5949700 None:intergenic 25.0%
! AATAGAATAAAGAAAGGTGA+AGG + chr7_3:5949757-5949776 None:intergenic 25.0%
!! CTTTGCTACAACTTTTTAAT+GGG - chr7_3:5949796-5949815 Msa1090960:three_prime_UTR 25.0%
!! ATGAATTTTGTGAAGAAGAA+TGG - chr7_3:5949915-5949934 Msa1090960:CDS 25.0%
!!! TCTTTTTCTTTTAGGTGATA+TGG - chr7_3:5950249-5950268 Msa1090960:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG - chr7_3:5950607-5950626 Msa1090960:intron 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG - chr7_3:5950608-5950627 Msa1090960:intron 25.0%
! TTAAGCATTATTTCCAAAAG+AGG + chr7_3:5950904-5950923 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAA+GGG + chr7_3:5950942-5950961 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG + chr7_3:5950947-5950966 None:intergenic 25.0%
!!! CATTTTTCAATAAATCACGA+TGG + chr7_3:5951204-5951223 None:intergenic 25.0%
!! GTGTCTTCTTTTATAGTAAT+GGG + chr7_3:5949623-5949642 None:intergenic 25.0%
!! TGTGTCTTCTTTTATAGTAA+TGG + chr7_3:5949624-5949643 None:intergenic 25.0%
! ATGATAAAGAAAGAAAGGAA+AGG + chr7_3:5949681-5949700 None:intergenic 25.0%
! AATAGAATAAAGAAAGGTGA+AGG + chr7_3:5949757-5949776 None:intergenic 25.0%
!! CTTTGCTACAACTTTTTAAT+GGG - chr7_3:5949796-5949815 Msa1090960:three_prime_UTR 25.0%
!! ATGAATTTTGTGAAGAAGAA+TGG - chr7_3:5949915-5949934 Msa1090960:CDS 25.0%
!!! TCTTTTTCTTTTAGGTGATA+TGG - chr7_3:5950249-5950268 Msa1090960:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG - chr7_3:5950607-5950626 Msa1090960:intron 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG - chr7_3:5950608-5950627 Msa1090960:intron 25.0%
! TTAAGCATTATTTCCAAAAG+AGG + chr7_3:5950904-5950923 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAA+GGG + chr7_3:5950942-5950961 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG + chr7_3:5950947-5950966 None:intergenic 25.0%
!!! CATTTTTCAATAAATCACGA+TGG + chr7_3:5951204-5951223 None:intergenic 25.0%
AAAGAAAGAAAGGAAAGGAA+AGG + chr7_3:5949676-5949695 None:intergenic 30.0%
CCATTAAAAAGTTGTAGCAA+AGG + chr7_3:5949798-5949817 None:intergenic 30.0%
! CCTTTGCTACAACTTTTTAA+TGG - chr7_3:5949795-5949814 Msa1090960:three_prime_UTR 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr7_3:5950421-5950440 Msa1090960:CDS 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG - chr7_3:5950743-5950762 Msa1090960:CDS 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG - chr7_3:5950746-5950765 Msa1090960:CDS 30.0%
ATTATTTCCAAAAGAGGATG+AGG + chr7_3:5950898-5950917 None:intergenic 30.0%
TAATAATAAAAGGAAGGGGA+GGG + chr7_3:5950937-5950956 None:intergenic 30.0%
GACCTAATAATAAAAGGAAG+GGG + chr7_3:5950941-5950960 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+AGG + chr7_3:5950943-5950962 None:intergenic 30.0%
TACAGAATCTCTTAAAAGGA+GGG + chr7_3:5951139-5951158 None:intergenic 30.0%
TTACAGAATCTCTTAAAAGG+AGG + chr7_3:5951140-5951159 None:intergenic 30.0%
CACTTACAGAATCTCTTAAA+AGG + chr7_3:5951143-5951162 None:intergenic 30.0%
AAGTGTATGTTTGATATCAC+TGG - chr7_3:5951158-5951177 Msa1090960:five_prime_UTR 30.0%
AAAGAAAGAAAGGAAAGGAA+AGG + chr7_3:5949676-5949695 None:intergenic 30.0%
CCATTAAAAAGTTGTAGCAA+AGG + chr7_3:5949798-5949817 None:intergenic 30.0%
! CCTTTGCTACAACTTTTTAA+TGG - chr7_3:5949795-5949814 Msa1090960:three_prime_UTR 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr7_3:5950421-5950440 Msa1090960:CDS 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG - chr7_3:5950743-5950762 Msa1090960:CDS 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG - chr7_3:5950746-5950765 Msa1090960:CDS 30.0%
ATTATTTCCAAAAGAGGATG+AGG + chr7_3:5950898-5950917 None:intergenic 30.0%
TAATAATAAAAGGAAGGGGA+GGG + chr7_3:5950937-5950956 None:intergenic 30.0%
GACCTAATAATAAAAGGAAG+GGG + chr7_3:5950941-5950960 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+AGG + chr7_3:5950943-5950962 None:intergenic 30.0%
TACAGAATCTCTTAAAAGGA+GGG + chr7_3:5951139-5951158 None:intergenic 30.0%
TTACAGAATCTCTTAAAAGG+AGG + chr7_3:5951140-5951159 None:intergenic 30.0%
CACTTACAGAATCTCTTAAA+AGG + chr7_3:5951143-5951162 None:intergenic 30.0%
AAGTGTATGTTTGATATCAC+TGG - chr7_3:5951158-5951177 Msa1090960:five_prime_UTR 30.0%
TGAAAGTGAAAAGAGAGAGA+AGG - chr7_3:5949517-5949536 Msa1090960:three_prime_UTR 35.0%
GAAAGTGAAAAGAGAGAGAA+GGG - chr7_3:5949518-5949537 Msa1090960:three_prime_UTR 35.0%
GAAAGGAAAGGAAAGGAAAA+GGG + chr7_3:5949669-5949688 None:intergenic 35.0%
AGAAAGGAAAGGAAAGGAAA+AGG + chr7_3:5949670-5949689 None:intergenic 35.0%
TGAAGGAAGGAAGAGAAAAA+GGG + chr7_3:5949740-5949759 None:intergenic 35.0%
GAATAAAGAAAGGTGAAGGA+AGG + chr7_3:5949753-5949772 None:intergenic 35.0%
ACAACAAGTTCTTCATCAGT+TGG + chr7_3:5949975-5949994 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr7_3:5949992-5950011 Msa1090960:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr7_3:5950042-5950061 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr7_3:5950089-5950108 None:intergenic 35.0%
TAGTACAAGTCATCATGTTC+CGG + chr7_3:5950194-5950213 None:intergenic 35.0%
AAAGAAGCCAAATACCCAAA+TGG - chr7_3:5950298-5950317 Msa1090960:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG - chr7_3:5950299-5950318 Msa1090960:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG + chr7_3:5950327-5950346 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG - chr7_3:5950391-5950410 Msa1090960:CDS 35.0%
AAGAAAGAAAGACTGACCAA+GGG + chr7_3:5950517-5950536 None:intergenic 35.0%
AAAGAAAGAAAGACTGACCA+AGG + chr7_3:5950518-5950537 None:intergenic 35.0%
! GGTGGTTTTCTATGATTTCT+TGG - chr7_3:5950764-5950783 Msa1090960:CDS 35.0%
TTTCTATGATTTCTTGGCAC+AGG - chr7_3:5950770-5950789 Msa1090960:CDS 35.0%
CAGTGGAATCACAAATGAAT+TGG - chr7_3:5950833-5950852 Msa1090960:CDS 35.0%
CTAATAATAAAAGGAAGGGG+AGG + chr7_3:5950938-5950957 None:intergenic 35.0%
! CTCCCCTTCCTTTTATTATT+AGG - chr7_3:5950936-5950955 Msa1090960:five_prime_UTR 35.0%
ATCTCAAATGTCCCAAAATG+AGG - chr7_3:5950993-5951012 Msa1090960:five_prime_UTR 35.0%
ACAGAATCTCTTAAAAGGAG+GGG + chr7_3:5951138-5951157 None:intergenic 35.0%
TGAAAGTGAAAAGAGAGAGA+AGG - chr7_3:5949517-5949536 Msa1090960:three_prime_UTR 35.0%
GAAAGTGAAAAGAGAGAGAA+GGG - chr7_3:5949518-5949537 Msa1090960:three_prime_UTR 35.0%
GAAAGGAAAGGAAAGGAAAA+GGG + chr7_3:5949669-5949688 None:intergenic 35.0%
AGAAAGGAAAGGAAAGGAAA+AGG + chr7_3:5949670-5949689 None:intergenic 35.0%
TGAAGGAAGGAAGAGAAAAA+GGG + chr7_3:5949740-5949759 None:intergenic 35.0%
GAATAAAGAAAGGTGAAGGA+AGG + chr7_3:5949753-5949772 None:intergenic 35.0%
ACAACAAGTTCTTCATCAGT+TGG + chr7_3:5949975-5949994 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr7_3:5949992-5950011 Msa1090960:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr7_3:5950042-5950061 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr7_3:5950089-5950108 None:intergenic 35.0%
TAGTACAAGTCATCATGTTC+CGG + chr7_3:5950194-5950213 None:intergenic 35.0%
AAAGAAGCCAAATACCCAAA+TGG - chr7_3:5950298-5950317 Msa1090960:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG - chr7_3:5950299-5950318 Msa1090960:CDS 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG + chr7_3:5950327-5950346 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG - chr7_3:5950391-5950410 Msa1090960:CDS 35.0%
AAGAAAGAAAGACTGACCAA+GGG + chr7_3:5950517-5950536 None:intergenic 35.0%
AAAGAAAGAAAGACTGACCA+AGG + chr7_3:5950518-5950537 None:intergenic 35.0%
! GGTGGTTTTCTATGATTTCT+TGG - chr7_3:5950764-5950783 Msa1090960:CDS 35.0%
TTTCTATGATTTCTTGGCAC+AGG - chr7_3:5950770-5950789 Msa1090960:CDS 35.0%
CAGTGGAATCACAAATGAAT+TGG - chr7_3:5950833-5950852 Msa1090960:CDS 35.0%
CTAATAATAAAAGGAAGGGG+AGG + chr7_3:5950938-5950957 None:intergenic 35.0%
! CTCCCCTTCCTTTTATTATT+AGG - chr7_3:5950936-5950955 Msa1090960:five_prime_UTR 35.0%
ATCTCAAATGTCCCAAAATG+AGG - chr7_3:5950993-5951012 Msa1090960:five_prime_UTR 35.0%
ACAGAATCTCTTAAAAGGAG+GGG + chr7_3:5951138-5951157 None:intergenic 35.0%
!! CGACATTTGTTTGAGTTGAG+TGG + chr7_3:5949560-5949579 None:intergenic 40.0%
GTGAAGGAAGGAAGAGAAAA+AGG + chr7_3:5949741-5949760 None:intergenic 40.0%
CTTCATCAGTTGGATGGAAA+CGG + chr7_3:5949965-5949984 None:intergenic 40.0%
CAAGTTCTTCATCAGTTGGA+TGG + chr7_3:5949971-5949990 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr7_3:5950028-5950047 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr7_3:5950050-5950069 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr7_3:5950057-5950076 Msa1090960:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr7_3:5950058-5950077 Msa1090960:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG + chr7_3:5950077-5950096 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG + chr7_3:5950193-5950212 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr7_3:5950220-5950239 Msa1090960:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr7_3:5950260-5950279 Msa1090960:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG + chr7_3:5950315-5950334 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG - chr7_3:5950328-5950347 Msa1090960:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG + chr7_3:5950454-5950473 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG - chr7_3:5950452-5950471 Msa1090960:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG + chr7_3:5950516-5950535 None:intergenic 40.0%
! TTTGTCGCATATCTCTGAAG+AGG - chr7_3:5950634-5950653 Msa1090960:intron 40.0%
TTTCCAAAAGAGGATGAGGA+TGG + chr7_3:5950894-5950913 None:intergenic 40.0%
CAAATGTCCCAAAATGAGGT+CGG - chr7_3:5950997-5951016 Msa1090960:five_prime_UTR 40.0%
! CTTAATGCCGACCTCATTTT+GGG + chr7_3:5951007-5951026 None:intergenic 40.0%
! TCTTAATGCCGACCTCATTT+TGG + chr7_3:5951008-5951027 None:intergenic 40.0%
!! CGACATTTGTTTGAGTTGAG+TGG + chr7_3:5949560-5949579 None:intergenic 40.0%
GTGAAGGAAGGAAGAGAAAA+AGG + chr7_3:5949741-5949760 None:intergenic 40.0%
CTTCATCAGTTGGATGGAAA+CGG + chr7_3:5949965-5949984 None:intergenic 40.0%
CAAGTTCTTCATCAGTTGGA+TGG + chr7_3:5949971-5949990 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr7_3:5950028-5950047 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr7_3:5950050-5950069 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr7_3:5950057-5950076 Msa1090960:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr7_3:5950058-5950077 Msa1090960:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG + chr7_3:5950077-5950096 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG + chr7_3:5950193-5950212 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr7_3:5950220-5950239 Msa1090960:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr7_3:5950260-5950279 Msa1090960:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG + chr7_3:5950315-5950334 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG - chr7_3:5950328-5950347 Msa1090960:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG + chr7_3:5950454-5950473 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG - chr7_3:5950452-5950471 Msa1090960:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG + chr7_3:5950516-5950535 None:intergenic 40.0%
! TTTGTCGCATATCTCTGAAG+AGG - chr7_3:5950634-5950653 Msa1090960:intron 40.0%
TTTCCAAAAGAGGATGAGGA+TGG + chr7_3:5950894-5950913 None:intergenic 40.0%
CAAATGTCCCAAAATGAGGT+CGG - chr7_3:5950997-5951016 Msa1090960:five_prime_UTR 40.0%
! CTTAATGCCGACCTCATTTT+GGG + chr7_3:5951007-5951026 None:intergenic 40.0%
! TCTTAATGCCGACCTCATTT+TGG + chr7_3:5951008-5951027 None:intergenic 40.0%
ATGGGTCAATGAGTCTGACA+AGG + chr7_3:5949605-5949624 None:intergenic 45.0%
GAAAGGAAAGGAAAAGGGCA+TGG + chr7_3:5949664-5949683 None:intergenic 45.0%
! GAACTTGTTTACCACACGAG+TGG - chr7_3:5949838-5949857 Msa1090960:three_prime_UTR 45.0%
AAATGTCAAAGCCACTCGTG+TGG + chr7_3:5949852-5949871 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr7_3:5950029-5950048 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr7_3:5950035-5950054 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr7_3:5950068-5950087 Msa1090960:CDS 45.0%
GCACAGACAGACACAGATAT+CGG - chr7_3:5950137-5950156 Msa1090960:CDS 45.0%
CACAGATATCGGACACAACA+TGG - chr7_3:5950148-5950167 Msa1090960:CDS 45.0%
TCGGTTCCCATTTGGGTATT+TGG + chr7_3:5950308-5950327 None:intergenic 45.0%
! CTGTTAGATCGGTTCCCATT+TGG + chr7_3:5950316-5950335 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr7_3:5950335-5950354 Msa1090960:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr7_3:5950346-5950365 Msa1090960:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG + chr7_3:5950451-5950470 None:intergenic 45.0%
! ATATCTCTGAAGAGGAGAGG+TGG - chr7_3:5950642-5950661 Msa1090960:intron 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr7_3:5950654-5950673 Msa1090960:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr7_3:5950659-5950678 Msa1090960:intron 45.0%
TTTGTGATTCCACTGCTAGC+TGG + chr7_3:5950828-5950847 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG - chr7_3:5950888-5950907 Msa1090960:five_prime_UTR 45.0%
AATAAAAGGAAGGGGAGGGA+GGG + chr7_3:5950933-5950952 None:intergenic 45.0%
TAATAAAAGGAAGGGGAGGG+AGG + chr7_3:5950934-5950953 None:intergenic 45.0%
TCACTGGTGTGTCACAATCA+TGG - chr7_3:5951174-5951193 Msa1090960:five_prime_UTR 45.0%
ATGGGTCAATGAGTCTGACA+AGG + chr7_3:5949605-5949624 None:intergenic 45.0%
GAAAGGAAAGGAAAAGGGCA+TGG + chr7_3:5949664-5949683 None:intergenic 45.0%
! GAACTTGTTTACCACACGAG+TGG - chr7_3:5949838-5949857 Msa1090960:three_prime_UTR 45.0%
AAATGTCAAAGCCACTCGTG+TGG + chr7_3:5949852-5949871 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr7_3:5950029-5950048 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr7_3:5950035-5950054 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr7_3:5950068-5950087 Msa1090960:CDS 45.0%
GCACAGACAGACACAGATAT+CGG - chr7_3:5950137-5950156 Msa1090960:CDS 45.0%
CACAGATATCGGACACAACA+TGG - chr7_3:5950148-5950167 Msa1090960:CDS 45.0%
TCGGTTCCCATTTGGGTATT+TGG + chr7_3:5950308-5950327 None:intergenic 45.0%
! CTGTTAGATCGGTTCCCATT+TGG + chr7_3:5950316-5950335 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr7_3:5950335-5950354 Msa1090960:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr7_3:5950346-5950365 Msa1090960:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG + chr7_3:5950451-5950470 None:intergenic 45.0%
! ATATCTCTGAAGAGGAGAGG+TGG - chr7_3:5950642-5950661 Msa1090960:intron 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr7_3:5950654-5950673 Msa1090960:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr7_3:5950659-5950678 Msa1090960:intron 45.0%
TTTGTGATTCCACTGCTAGC+TGG + chr7_3:5950828-5950847 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG - chr7_3:5950888-5950907 Msa1090960:five_prime_UTR 45.0%
AATAAAAGGAAGGGGAGGGA+GGG + chr7_3:5950933-5950952 None:intergenic 45.0%
TAATAAAAGGAAGGGGAGGG+AGG + chr7_3:5950934-5950953 None:intergenic 45.0%
TCACTGGTGTGTCACAATCA+TGG - chr7_3:5951174-5951193 Msa1090960:five_prime_UTR 45.0%
GTTGGATGGAAACGGAAACC+TGG + chr7_3:5949957-5949976 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr7_3:5950436-5950455 Msa1090960:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr7_3:5950512-5950531 None:intergenic 50.0%
! CGCATATCTCTGAAGAGGAG+AGG - chr7_3:5950639-5950658 Msa1090960:intron 50.0%
CCAAAGTTGCTGCAACTGCT+TGG + chr7_3:5950696-5950715 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG - chr7_3:5950693-5950712 Msa1090960:intron 50.0%
CAGTTGCAGCAACTTTGGTG+AGG - chr7_3:5950698-5950717 Msa1090960:CDS 50.0%
ATAAAAGGAAGGGGAGGGAG+GGG + chr7_3:5950932-5950951 None:intergenic 50.0%
GTTGGATGGAAACGGAAACC+TGG + chr7_3:5949957-5949976 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr7_3:5950436-5950455 Msa1090960:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr7_3:5950512-5950531 None:intergenic 50.0%
! CGCATATCTCTGAAGAGGAG+AGG - chr7_3:5950639-5950658 Msa1090960:intron 50.0%
CCAAAGTTGCTGCAACTGCT+TGG + chr7_3:5950696-5950715 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG - chr7_3:5950693-5950712 Msa1090960:intron 50.0%
CAGTTGCAGCAACTTTGGTG+AGG - chr7_3:5950698-5950717 Msa1090960:CDS 50.0%
ATAAAAGGAAGGGGAGGGAG+GGG + chr7_3:5950932-5950951 None:intergenic 50.0%
GGTGAAGTGAGATTGCCACC+AGG - chr7_3:5949936-5949955 Msa1090960:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG + chr7_3:5949954-5949973 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG - chr7_3:5950172-5950191 Msa1090960:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr7_3:5950495-5950514 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr7_3:5950498-5950517 Msa1090960:CDS 55.0%
GATTCCACTGCTAGCTGGTG+AGG + chr7_3:5950823-5950842 None:intergenic 55.0%
TAAAAGGAAGGGGAGGGAGG+GGG + chr7_3:5950931-5950950 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG - chr7_3:5949936-5949955 Msa1090960:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG + chr7_3:5949954-5949973 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG - chr7_3:5950172-5950191 Msa1090960:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr7_3:5950495-5950514 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr7_3:5950498-5950517 Msa1090960:CDS 55.0%
GATTCCACTGCTAGCTGGTG+AGG + chr7_3:5950823-5950842 None:intergenic 55.0%
TAAAAGGAAGGGGAGGGAGG+GGG + chr7_3:5950931-5950950 None:intergenic 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr7_3:5950503-5950522 None:intergenic 60.0%
ACTGCTAGCTGGTGAGGAGG+AGG + chr7_3:5950817-5950836 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG - chr7_3:5950816-5950835 Msa1090960:CDS 60.0%
TCCACTGCTAGCTGGTGAGG+AGG + chr7_3:5950820-5950839 None:intergenic 60.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr7_3:5950503-5950522 None:intergenic 60.0%
ACTGCTAGCTGGTGAGGAGG+AGG + chr7_3:5950817-5950836 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG - chr7_3:5950816-5950835 Msa1090960:CDS 60.0%
TCCACTGCTAGCTGGTGAGG+AGG + chr7_3:5950820-5950839 None:intergenic 60.0%
AAGGAAGGGGAGGGAGGGGG+TGG + chr7_3:5950928-5950947 None:intergenic 70.0%
AAGGAAGGGGAGGGAGGGGG+TGG + chr7_3:5950928-5950947 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 5949513 5951272 5949513 ID=Msa1090960;Name=Msa1090960
chr7_3 mRNA 5949513 5951272 5949513 ID=Msa1090960-mRNA-1;Parent=Msa1090960;Name=Msa1090960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=393|1|1|1|1|1|3|349|248
chr7_3 exon 5949513 5950167 5949513 ID=Msa1090960-mRNA-1:exon:1810;Parent=Msa1090960-mRNA-1
chr7_3 exon 5950266 5950522 5950266 ID=Msa1090960-mRNA-1:exon:1809;Parent=Msa1090960-mRNA-1
chr7_3 exon 5950696 5951272 5950696 ID=Msa1090960-mRNA-1:exon:1808;Parent=Msa1090960-mRNA-1
chr7_3 five_prime_UTR 5950880 5951272 5950880 ID=Msa1090960-mRNA-1:five_prime_utr;Parent=Msa1090960-mRNA-1
chr7_3 CDS 5950696 5950879 5950696 ID=Msa1090960-mRNA-1:cds;Parent=Msa1090960-mRNA-1
chr7_3 CDS 5950266 5950522 5950266 ID=Msa1090960-mRNA-1:cds;Parent=Msa1090960-mRNA-1
chr7_3 CDS 5949862 5950167 5949862 ID=Msa1090960-mRNA-1:cds;Parent=Msa1090960-mRNA-1
chr7_3 three_prime_UTR 5949513 5949861 5949513 ID=Msa1090960-mRNA-1:three_prime_utr;Parent=Msa1090960-mRNA-1
Gene Sequence

>Msa1090960

ATGGAGAAGATGAATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTCCATCCAACTGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAATACCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTAGACAAACAAATCATGAATTCAAAGAGTCATGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTTTGTCGCATATCTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGAGAGTGAAGCCAAGCAGTTGCAGCAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAAGCTCAAATTCAAGTTCAAAAGTGGTGGTTTTCTATGATTTCTTGGCACAGGAGAAGAACAATACTGATGCATCCTCCTCCTCACCAGCTAGCAGTGGAATCACAAATGAATTGGATGAACATGAAAATGAAGACAGCAGTAACTCGCTTCCATCCTCATCCTCTTTTGGAAATAATGCTTAA
Protein sequence

>Msa1090960

MEKMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKSHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRISLKRRGGAKNGEERVKPSSCSNFGEVKKNSASSSNSSSKVVVFYDFLAQEKNNTDASSSSPASSGITNELDEHENEDSSNSLPSSSSFGNNA*