AlfalfaGEDB | Msa1092060

M. sativa cultivar zhongmu-4 / Msa1092060

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092060	XP_024636626.1	85.161	155	15	1	4	150	36	190	9.29e-88	267

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092060	sp\|Q8RYD1\|REM16_ARATH	43.860	114	49	4	4	108	38	145	2.07e-20	88.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092060	A0A396JGK5	85.161	155	15	1	4	150	36	190	4.44e-88	267

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TFs/TRs:

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Gene ID	Type	Classification
Msa1092060	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092060	MtrunA17_Chr1g0154241	85.161	155	15	1	4	150	36	190	8.54e-92	267
Msa1092060	MtrunA17_Chr1g0154211	63.462	156	46	2	4	148	37	192	3.03e-61	193
Msa1092060	MtrunA17_Chr1g0154111	65.806	155	43	3	4	149	41	194	6.77e-60	194
Msa1092060	MtrunA17_Chr1g0154111	61.224	147	42	5	4	149	368	500	5.37e-44	152
Msa1092060	MtrunA17_Chr1g0154191	61.589	151	48	2	4	144	37	187	2.94e-55	177
Msa1092060	MtrunA17_Chr1g0154101	61.783	157	50	4	4	150	197	353	1.16e-52	178
Msa1092060	MtrunA17_Chr1g0154101	69.600	125	30	1	4	120	40	164	8.29e-51	172
Msa1092060	MtrunA17_Chr1g0154251	59.509	163	50	4	4	150	41	203	1.96e-52	173
Msa1092060	MtrunA17_Chr1g0154171	59.477	153	44	5	4	145	37	182	6.49e-48	158
Msa1092060	MtrunA17_Chr1g0154131	64.516	124	36	1	4	119	40	163	7.09e-47	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092060	AT4G33280.2	47.917	96	41	3	4	90	38	133	1.65e-21	88.2
Msa1092060	AT4G33280.1	43.860	114	49	4	4	108	38	145	2.10e-21	88.6
Msa1092060	AT4G33280.3	47.917	96	41	3	4	90	38	133	6.97e-21	87.8
Msa1092060	AT4G34400.2	36.232	69	44	0	4	72	30	98	1.33e-13	67.4
Msa1092060	AT4G34400.1	36.232	69	44	0	4	72	30	98	1.33e-13	67.4
Msa1092060	AT3G06220.1	26.126	111	64	2	5	106	25	126	1.47e-11	59.7

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Find 25 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCATACTGAGCAAG+AGG	0.610370	7_3:-8108644	Msa1092060:CDS
AAAGGTCATACTGAGCAAGA+GGG	0.680883	7_3:-8108643	Msa1092060:CDS
AACTCCACTAGGACCTTTAA+GGG	0.479312	7_3:+8108871	None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG	0.624686	7_3:-8108865	Msa1092060:CDS
AATGAAAAGACTTCTAATGC+TGG	0.546042	7_3:-8108484	Msa1092060:intron
AATGCAGTTCTGAGAAATTT+CGG	0.340578	7_3:-8108555	Msa1092060:CDS
ACCTTATATATGCGAGAAAG+CGG	0.555289	7_3:-8108692	Msa1092060:CDS
ACGTGAAACTGATAGTTATG+TGG	0.581595	7_3:+8104953	None:intergenic
AGTGGAGTTGTGTGGAATAT+AGG	0.300231	7_3:-8108857	Msa1092060:CDS
ATATTCCACACAACTCCACT+AGG	0.578077	7_3:+8108860	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAAGACTTCTAATGC+TGG	-	chr7_3:8105473-8105492	Msa1092060:intron	30.0%
ATTAATTGCTGAGAAAGAAG+TGG	-	chr7_3:8105631-8105650	Msa1092060:intron	30.0%
AATGATGCAAGCTTGATTTA+AGG	-	chr7_3:8105748-8105767	Msa1092060:intron	30.0%
ATGATGCAAGCTTGATTTAA+GGG	-	chr7_3:8105749-8105768	Msa1092060:intron	30.0%
TTATTCTAGACTATTCTAGG+TGG	+	chr7_3:8105870-8105889	None:intergenic	30.0%
AGGTTATTCTAGACTATTCT+AGG	+	chr7_3:8105873-8105892	None:intergenic	30.0%
TAATGACTAAGCAAATACCT+AGG	+	chr7_3:8105893-8105912	None:intergenic	30.0%
TTATATATCCCACTGATATC+AGG	-	chr7_3:8106194-8106213	Msa1092060:intron	30.0%
ATTACTAGAAGAAGCTTGTA+AGG	-	chr7_3:8107038-8107057	Msa1092060:intron	30.0%
TTGCATTAATTCTTGAGACA+TGG	+	chr7_3:8107075-8107094	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	8104968	8109011	8104968	ID=Msa1092060;Name=Msa1092060
chr7_3	mRNA	8104968	8109011	8104968	ID=Msa1092060-mRNA-1;Parent=Msa1092060;Name=Msa1092060-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0\|0\|0\|0.75\|0.33\|0.25\|4\|0\|150
chr7_3	exon	8109003	8109011	8109003	ID=Msa1092060-mRNA-1:exon:2428;Parent=Msa1092060-mRNA-1
chr7_3	exon	8108743	8108948	8108743	ID=Msa1092060-mRNA-1:exon:2427;Parent=Msa1092060-mRNA-1
chr7_3	exon	8108485	8108714	8108485	ID=Msa1092060-mRNA-1:exon:2426;Parent=Msa1092060-mRNA-1
chr7_3	exon	8104968	8104975	8104968	ID=Msa1092060-mRNA-1:exon:2425;Parent=Msa1092060-mRNA-1
chr7_3	CDS	8109003	8109011	8109003	ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1
chr7_3	CDS	8108743	8108948	8108743	ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1
chr7_3	CDS	8108485	8108714	8108485	ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1
chr7_3	CDS	8104968	8104975	8104968	ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1

Gene Sequence

>Msa1092060

ATGACTAGTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAAAAGTTTCCTGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAAAGAGGACACTGCTTACTTCACAAACGGTTGGCAAGGATTTGTGAATGATGACTCTTTGAAAGAGAGTGATCTCCTTTTTTTCAAGTACAATGGCGAATCATTACCTTATATATGCGAGAAAGCGGGCTCTTACTTTGTTAGAAAATGTGGAAAAGGTCATACTGAGCAAGAGGGAGACAAGACAAAGGTTGCAAAGAATTCTGTTGAAGAAGTCAACACTACTTCTAATGGCGGTGTTGAATGCAGTTCTGAGAAATTTCGGAAGCTTGACACTATAAGAACACCATTAGCTGTACCTTTCGAAAATACCAATGAAAAGACTTCTAATGCTGCCACATAA

Protein sequence

>Msa1092060

MTSALPKTFSDNLKKKFPENVTLKGPSGVVWNIGLTTKEDTAYFTNGWQGFVNDDSLKESDLLFFKYNGESLPYICEKAGSYFVRKCGKGHTEQEGDKTKVAKNSVEEVNTTSNGGVECSSEKFRKLDTIRTPLAVPFENTNEKTSNAAT*