Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092060 | XP_024636626.1 | 85.161 | 155 | 15 | 1 | 4 | 150 | 36 | 190 | 9.29e-88 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092060 | sp|Q8RYD1|REM16_ARATH | 43.860 | 114 | 49 | 4 | 4 | 108 | 38 | 145 | 2.07e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092060 | A0A396JGK5 | 85.161 | 155 | 15 | 1 | 4 | 150 | 36 | 190 | 4.44e-88 | 267 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1092060 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092060 | MtrunA17_Chr1g0154241 | 85.161 | 155 | 15 | 1 | 4 | 150 | 36 | 190 | 8.54e-92 | 267 |
| Msa1092060 | MtrunA17_Chr1g0154211 | 63.462 | 156 | 46 | 2 | 4 | 148 | 37 | 192 | 3.03e-61 | 193 |
| Msa1092060 | MtrunA17_Chr1g0154111 | 65.806 | 155 | 43 | 3 | 4 | 149 | 41 | 194 | 6.77e-60 | 194 |
| Msa1092060 | MtrunA17_Chr1g0154111 | 61.224 | 147 | 42 | 5 | 4 | 149 | 368 | 500 | 5.37e-44 | 152 |
| Msa1092060 | MtrunA17_Chr1g0154191 | 61.589 | 151 | 48 | 2 | 4 | 144 | 37 | 187 | 2.94e-55 | 177 |
| Msa1092060 | MtrunA17_Chr1g0154101 | 61.783 | 157 | 50 | 4 | 4 | 150 | 197 | 353 | 1.16e-52 | 178 |
| Msa1092060 | MtrunA17_Chr1g0154101 | 69.600 | 125 | 30 | 1 | 4 | 120 | 40 | 164 | 8.29e-51 | 172 |
| Msa1092060 | MtrunA17_Chr1g0154251 | 59.509 | 163 | 50 | 4 | 4 | 150 | 41 | 203 | 1.96e-52 | 173 |
| Msa1092060 | MtrunA17_Chr1g0154171 | 59.477 | 153 | 44 | 5 | 4 | 145 | 37 | 182 | 6.49e-48 | 158 |
| Msa1092060 | MtrunA17_Chr1g0154131 | 64.516 | 124 | 36 | 1 | 4 | 119 | 40 | 163 | 7.09e-47 | 158 |
| Msa1092060 | MtrunA17_Chr1g0154131 | 63.063 | 111 | 33 | 1 | 4 | 106 | 197 | 307 | 1.38e-40 | 141 |
| Msa1092060 | MtrunA17_Chr1g0154161 | 64.167 | 120 | 33 | 2 | 4 | 115 | 45 | 162 | 7.42e-43 | 144 |
| Msa1092060 | MtrunA17_Chr1g0154071 | 60.331 | 121 | 40 | 2 | 4 | 116 | 170 | 290 | 2.14e-40 | 141 |
| Msa1092060 | MtrunA17_Chr1g0154071 | 66.337 | 101 | 26 | 2 | 4 | 96 | 42 | 142 | 6.51e-39 | 137 |
| Msa1092060 | MtrunA17_Chr1g0154151 | 49.673 | 153 | 56 | 4 | 1 | 145 | 16 | 155 | 2.22e-39 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092060 | AT4G33280.2 | 47.917 | 96 | 41 | 3 | 4 | 90 | 38 | 133 | 1.65e-21 | 88.2 |
| Msa1092060 | AT4G33280.1 | 43.860 | 114 | 49 | 4 | 4 | 108 | 38 | 145 | 2.10e-21 | 88.6 |
| Msa1092060 | AT4G33280.3 | 47.917 | 96 | 41 | 3 | 4 | 90 | 38 | 133 | 6.97e-21 | 87.8 |
| Msa1092060 | AT4G34400.2 | 36.232 | 69 | 44 | 0 | 4 | 72 | 30 | 98 | 1.33e-13 | 67.4 |
| Msa1092060 | AT4G34400.1 | 36.232 | 69 | 44 | 0 | 4 | 72 | 30 | 98 | 1.33e-13 | 67.4 |
| Msa1092060 | AT3G06220.1 | 26.126 | 111 | 64 | 2 | 5 | 106 | 25 | 126 | 1.47e-11 | 59.7 |
Find 25 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAAAATGTGACCCTTAA+AGG | 0.134346 | 7_3:-8108884 | Msa1092060:CDS |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 7_3:+8108870 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 7_3:-8108857 | Msa1092060:CDS |
| CCCGCTTTCTCGCATATATA+AGG | 0.321213 | 7_3:+8108691 | None:intergenic |
| AATGCAGTTCTGAGAAATTT+CGG | 0.340578 | 7_3:-8108555 | Msa1092060:CDS |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 7_3:-8108856 | Msa1092060:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 7_3:-8108661 | Msa1092060:CDS |
| GAAGTCAACACTACTTCTAA+TGG | 0.425936 | 7_3:-8108586 | Msa1092060:CDS |
| TCTTACTTTGTTAGAAAATG+TGG | 0.473474 | 7_3:-8108667 | Msa1092060:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 7_3:+8108871 | None:intergenic |
| GACACTGCTTACTTCACAAA+CGG | 0.484793 | 7_3:-8108818 | Msa1092060:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.514551 | 7_3:-8108809 | Msa1092060:CDS |
| CTGCTTACTTCACAAACGGT+TGG | 0.534281 | 7_3:-8108814 | Msa1092060:CDS |
| AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 7_3:-8108484 | Msa1092060:intron |
| ACCTTATATATGCGAGAAAG+CGG | 0.555289 | 7_3:-8108692 | Msa1092060:CDS |
| CCTTATATATGCGAGAAAGC+GGG | 0.572083 | 7_3:-8108691 | Msa1092060:CDS |
| TATAGGGCTGACAACTAAAG+AGG | 0.573508 | 7_3:-8108840 | Msa1092060:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 7_3:+8108860 | None:intergenic |
| ACGTGAAACTGATAGTTATG+TGG | 0.581595 | 7_3:+8104953 | None:intergenic |
| AAAAGGTCATACTGAGCAAG+AGG | 0.610370 | 7_3:-8108644 | Msa1092060:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 7_3:-8108865 | Msa1092060:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 7_3:-8108875 | Msa1092060:CDS |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 7_3:-8108643 | Msa1092060:CDS |
| GCAAGAGGGAGACAAGACAA+AGG | 0.695989 | 7_3:-8108629 | Msa1092060:CDS |
| GTCAACACTACTTCTAATGG+CGG | 0.701194 | 7_3:-8108583 | Msa1092060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATATGATAATAAA+AGG | - | chr7_3:8106840-8106859 | Msa1092060:intron | 10.0% |
| !! | ATATTAAAACTACTAATTAT+TGG | - | chr7_3:8107915-8107934 | Msa1092060:intron | 10.0% |
| !!! | TTTGAAGTTTTAATATTTCA+TGG | - | chr7_3:8105238-8105257 | Msa1092060:intron | 15.0% |
| !! | AAAAGAAAAAGAAAAAGAAA+AGG | - | chr7_3:8106604-8106623 | Msa1092060:intron | 15.0% |
| !! | TGAATTTAGATTAGAAATTA+GGG | - | chr7_3:8107259-8107278 | Msa1092060:intron | 15.0% |
| !! | ATTGCATATTATTATATTTC+AGG | + | chr7_3:8107818-8107837 | None:intergenic | 15.0% |
| !! | ATGTTTATACATTTATTTGC+AGG | - | chr7_3:8105009-8105028 | Msa1092060:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr7_3:8105040-8105059 | None:intergenic | 20.0% |
| !!! | TAGATTTTTTCTAGTCTTAA+TGG | + | chr7_3:8105840-8105859 | None:intergenic | 20.0% |
| !!! | AAAGGTATAAGTTAAGATTT+TGG | + | chr7_3:8106911-8106930 | None:intergenic | 20.0% |
| !! | AGTAATTAAATCAGCTAAAT+AGG | + | chr7_3:8107024-8107043 | None:intergenic | 20.0% |
| !! | ATGGTTAATTCATGTTAAAA+CGG | - | chr7_3:8107236-8107255 | Msa1092060:intron | 20.0% |
| !! | GTGAATTTAGATTAGAAATT+AGG | - | chr7_3:8107258-8107277 | Msa1092060:intron | 20.0% |
| !! | ATAAAATGAAGGTTAAAGTT+TGG | - | chr7_3:8107286-8107305 | Msa1092060:intron | 20.0% |
| !! | CAAGAAAGTAAAGAAATAAA+AGG | - | chr7_3:8107422-8107441 | Msa1092060:intron | 20.0% |
| !! | AAACAAATCATCTTTATTCT+TGG | + | chr7_3:8107487-8107506 | None:intergenic | 20.0% |
| !! | TTTCAGGAATAAATATTTGA+TGG | + | chr7_3:8107802-8107821 | None:intergenic | 20.0% |
| !! | TGAAATAAAATAGCTCAAAA+AGG | - | chr7_3:8107838-8107857 | Msa1092060:intron | 20.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | - | chr7_3:8105290-8105309 | Msa1092060:intron | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr7_3:8105296-8105315 | Msa1092060:intron | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | + | chr7_3:8105461-8105480 | None:intergenic | 25.0% |
| ! | AAATCGAATATCAATATGCT+TGG | + | chr7_3:8105597-8105616 | None:intergenic | 25.0% |
| ! | TACAAATTGAAGAAAATGCT+TGG | - | chr7_3:8105725-8105744 | Msa1092060:intron | 25.0% |
| !! | ATCTCTTTAGATTTTTCTAG+TGG | + | chr7_3:8105970-8105989 | None:intergenic | 25.0% |
| !! | ACTAGATTTTTCTACATAGA+TGG | + | chr7_3:8106021-8106040 | None:intergenic | 25.0% |
| ! | TTATAGGCTCTTAATCTTAA+TGG | + | chr7_3:8106064-8106083 | None:intergenic | 25.0% |
| ! | TAAGATTAAGAGCCTATAAA+AGG | - | chr7_3:8106065-8106084 | Msa1092060:intron | 25.0% |
| ! | TAAACTAACAAAGAATAGCA+AGG | + | chr7_3:8106158-8106177 | None:intergenic | 25.0% |
| ! | AAAATAGAGATGTGTAGATT+AGG | - | chr7_3:8106271-8106290 | Msa1092060:intron | 25.0% |
| ! | AGAAATAAGTTGTAAAGTAG+AGG | - | chr7_3:8106803-8106822 | Msa1092060:intron | 25.0% |
| ! | GAAATAAGTTGTAAAGTAGA+GGG | - | chr7_3:8106804-8106823 | Msa1092060:intron | 25.0% |
| ! | GAAATTAGGTGTAAACATAA+AGG | + | chr7_3:8106929-8106948 | None:intergenic | 25.0% |
| ! | TTAAATCAGCTAAATAGGTT+TGG | + | chr7_3:8107019-8107038 | None:intergenic | 25.0% |
| !! | TGAATTGATATTTGAGATGA+TGG | - | chr7_3:8107168-8107187 | Msa1092060:intron | 25.0% |
| ! | AATTAACCATTATCAAACTG+TGG | + | chr7_3:8107226-8107245 | None:intergenic | 25.0% |
| ! | ATTAGGGTTACATAAAATGA+AGG | - | chr7_3:8107275-8107294 | Msa1092060:intron | 25.0% |
| !!! | TAAAGATGATTTGTTTGTGA+TGG | - | chr7_3:8107491-8107510 | Msa1092060:intron | 25.0% |
| ! | GGAGTAAAAATATGAAGATT+TGG | + | chr7_3:8107738-8107757 | None:intergenic | 25.0% |
| ! | AAATCGAATATCAATATGCT+TGG | + | chr7_3:8105597-8105616 | None:intergenic | 25.0% |
| ! | CTTTCTCAGTAATTAATTCT+CGG | + | chr7_3:8108110-8108129 | None:intergenic | 25.0% |
| ! | ATTAATTACTGAGAAAGAAG+TGG | - | chr7_3:8108113-8108132 | Msa1092060:intron | 25.0% |
| ! | TACAAATTGAAGAAAATGCT+TGG | - | chr7_3:8105725-8105744 | Msa1092060:intron | 25.0% |
| !!! | TAGATTTTTTCCAGTCTTAA+TGG | + | chr7_3:8108315-8108334 | None:intergenic | 25.0% |
| !! | ACTAGATTTTTCTACATAGA+TGG | + | chr7_3:8106021-8106040 | None:intergenic | 25.0% |
| ! | TTATAGGCTCTTAATCTTAA+TGG | + | chr7_3:8106064-8106083 | None:intergenic | 25.0% |
| ! | TAAGATTAAGAGCCTATAAA+AGG | - | chr7_3:8106065-8106084 | Msa1092060:intron | 25.0% |
| ! | TAAACTAACAAAGAATAGCA+AGG | + | chr7_3:8106158-8106177 | None:intergenic | 25.0% |
| ! | TAAACTAACAAAGAATAGCA+AGG | + | chr7_3:8106158-8106177 | None:intergenic | 25.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | - | chr7_3:8105205-8105224 | Msa1092060:intron | 30.0% |
| !! | AATGCAGTTCTGAGAAATTT+CGG | - | chr7_3:8105402-8105421 | Msa1092060:intron | 30.0% |
| ! | AGCATTAGAAGTCTTTTCAT+TGG | + | chr7_3:8105474-8105493 | None:intergenic | 30.0% |
| AATGAAAAGACTTCTAATGC+TGG | - | chr7_3:8105473-8105492 | Msa1092060:intron | 30.0% | |
| ATTAATTGCTGAGAAAGAAG+TGG | - | chr7_3:8105631-8105650 | Msa1092060:intron | 30.0% | |
| AATGATGCAAGCTTGATTTA+AGG | - | chr7_3:8105748-8105767 | Msa1092060:intron | 30.0% | |
| ATGATGCAAGCTTGATTTAA+GGG | - | chr7_3:8105749-8105768 | Msa1092060:intron | 30.0% | |
| ! | TCTAGAAAAGTATAGAAGCT+TGG | - | chr7_3:8105802-8105821 | Msa1092060:intron | 30.0% |
| TTATTCTAGACTATTCTAGG+TGG | + | chr7_3:8105870-8105889 | None:intergenic | 30.0% | |
| AGGTTATTCTAGACTATTCT+AGG | + | chr7_3:8105873-8105892 | None:intergenic | 30.0% | |
| ! | AGAATAGTCTAGAATAACCT+AGG | - | chr7_3:8105873-8105892 | Msa1092060:intron | 30.0% |
| TAATGACTAAGCAAATACCT+AGG | + | chr7_3:8105893-8105912 | None:intergenic | 30.0% | |
| !! | TCTTTAGATTTTTCTAGTGG+CGG | + | chr7_3:8105967-8105986 | None:intergenic | 30.0% |
| TTATATATCCCACTGATATC+AGG | - | chr7_3:8106194-8106213 | Msa1092060:intron | 30.0% | |
| !! | TATGATAATAAAAGGTGCCT+TGG | - | chr7_3:8106848-8106867 | Msa1092060:intron | 30.0% |
| !! | ATGATAATAAAAGGTGCCTT+GGG | - | chr7_3:8106849-8106868 | Msa1092060:intron | 30.0% |
| !!! | GTTAAGATTTTGGTTTGTGA+AGG | + | chr7_3:8106901-8106920 | None:intergenic | 30.0% |
| ! | TACACCTAATTTCTAAAGAC+CGG | - | chr7_3:8106936-8106955 | Msa1092060:intron | 30.0% |
| ATTACTAGAAGAAGCTTGTA+AGG | - | chr7_3:8107038-8107057 | Msa1092060:intron | 30.0% | |
| TTGCATTAATTCTTGAGACA+TGG | + | chr7_3:8107075-8107094 | None:intergenic | 30.0% | |
| AATTTAGACAAGAATTGCAG+AGG | + | chr7_3:8107112-8107131 | None:intergenic | 30.0% | |
| ATCAATTCATAATGCAAACG+CGG | + | chr7_3:8107157-8107176 | None:intergenic | 30.0% | |
| !! | GGTTAAAGTTTGGTTTGATT+AGG | - | chr7_3:8107296-8107315 | Msa1092060:intron | 30.0% |
| TTATCACAGTATATCACTGT+AGG | + | chr7_3:8108009-8108028 | None:intergenic | 30.0% | |
| ! | AGCAAAAATCCAGTTTTTCA+TGG | - | chr7_3:8108048-8108067 | Msa1092060:intron | 30.0% |
| TAAAATGACTCAGTCTTCAA+CGG | + | chr7_3:8105707-8105726 | None:intergenic | 30.0% | |
| ! | TCTAGAAAAGTATAGAAGCT+TGG | - | chr7_3:8105802-8105821 | Msa1092060:intron | 30.0% |
| TTATTCTAGATTATTCCAGG+TGG | + | chr7_3:8108345-8108364 | None:intergenic | 30.0% | |
| AGGTTATTCTAGATTATTCC+AGG | + | chr7_3:8108348-8108367 | None:intergenic | 30.0% | |
| ! | GGAATAATCTAGAATAACCT+AGG | - | chr7_3:8108348-8108367 | Msa1092060:intron | 30.0% |
| TAATGACTAAGCAAATACCT+AGG | + | chr7_3:8105893-8105912 | None:intergenic | 30.0% | |
| ! | AACTCTCTAGATTTTTCTAG+TGG | + | chr7_3:8108441-8108460 | None:intergenic | 30.0% |
| TTATATGTCCCACTGATATT+AGG | - | chr7_3:8108665-8108684 | Msa1092060:CDS | 30.0% | |
| TTACCACATAACAACCTATT+AGG | - | chr7_3:8108906-8108925 | Msa1092060:CDS | 30.0% | |
| AACAATTATGTATTATGCCC+AGG | + | chr7_3:8108935-8108954 | None:intergenic | 30.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | + | chr7_3:8105210-8105229 | None:intergenic | 35.0% | |
| ACCTTATATATGCGAGAAAG+CGG | - | chr7_3:8105265-8105284 | Msa1092060:intron | 35.0% | |
| GAAGTCAACACTACTTCTAA+TGG | - | chr7_3:8105371-8105390 | Msa1092060:intron | 35.0% | |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | + | chr7_3:8105449-8105468 | None:intergenic | 35.0% |
| ! | ATGAAGAACTGGATTTTTGC+CGG | + | chr7_3:8105567-8105586 | None:intergenic | 35.0% |
| CTAGATTATTCCTATAGAGG+AGG | + | chr7_3:8105996-8106015 | None:intergenic | 35.0% | |
| GTGCTAGATTATTCCTATAG+AGG | + | chr7_3:8105999-8106018 | None:intergenic | 35.0% | |
| TCAAACTTGATACATCACGA+TGG | + | chr7_3:8106102-8106121 | None:intergenic | 35.0% | |
| AATTCATTCACGAGATCGAA+AGG | + | chr7_3:8106498-8106517 | None:intergenic | 35.0% | |
| TTGAGAACCCAAGAAGTTAA+CGG | - | chr7_3:8106548-8106567 | Msa1092060:intron | 35.0% | |
| TCTGTTACCGTTAACTTCTT+GGG | + | chr7_3:8106558-8106577 | None:intergenic | 35.0% | |
| TTCTGTTACCGTTAACTTCT+TGG | + | chr7_3:8106559-8106578 | None:intergenic | 35.0% | |
| AGAAGTTAACGGTAACAGAA+AGG | - | chr7_3:8106559-8106578 | Msa1092060:intron | 35.0% | |
| TGAATTGAACAACTCCTTGT+CGG | + | chr7_3:8106758-8106777 | None:intergenic | 35.0% | |
| ! | GAAACCGGTCTTTAGAAATT+AGG | + | chr7_3:8106943-8106962 | None:intergenic | 35.0% |
| ! | TAAATAGGTTTGGTTGCTAG+AGG | + | chr7_3:8107009-8107028 | None:intergenic | 35.0% |
| TCGTTTCCACAGTTTGATAA+TGG | - | chr7_3:8107217-8107236 | Msa1092060:intron | 35.0% | |
| TTCTCTTGTCTTTGGATTGT+TGG | + | chr7_3:8107341-8107360 | None:intergenic | 35.0% | |
| ! | ATATTTGATGGATCGAGTCT+TGG | + | chr7_3:8107790-8107809 | None:intergenic | 35.0% |
| ATCATGCTACTCAAATAGTG+TGG | - | chr7_3:8107941-8107960 | Msa1092060:intron | 35.0% | |
| TGCTTGGAAAGCTTGATTTA+AGG | - | chr7_3:8108223-8108242 | Msa1092060:intron | 35.0% | |
| GCTTGGAAAGCTTGATTTAA+GGG | - | chr7_3:8108224-8108243 | Msa1092060:intron | 35.0% | |
| !! | TCTCTAGATTTTTCTAGTGG+CGG | + | chr7_3:8108438-8108457 | None:intergenic | 35.0% |
| CTAGATTATTCCTATAGAGG+AGG | + | chr7_3:8105996-8106015 | None:intergenic | 35.0% | |
| GTGCTAGATTATTCCTATAG+AGG | + | chr7_3:8105999-8106018 | None:intergenic | 35.0% | |
| TCAAACTTGATACATCACGA+TGG | + | chr7_3:8106102-8106121 | None:intergenic | 35.0% | |
| TCAAACTTGATACATCACGA+TGG | + | chr7_3:8106102-8106121 | None:intergenic | 35.0% | |
| TTATATGTCCCACTGATATC+AGG | - | chr7_3:8108814-8108833 | Msa1092060:CDS | 35.0% | |
| !! | CCTTTAAGGGTCACATTTTC+AGG | + | chr7_3:8105076-8105095 | None:intergenic | 40.0% |
| CCTGAAAATGTGACCCTTAA+AGG | - | chr7_3:8105073-8105092 | Msa1092060:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr7_3:8105089-8105108 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr7_3:8105100-8105119 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr7_3:8105100-8105119 | Msa1092060:intron | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr7_3:8105101-8105120 | Msa1092060:intron | 40.0% | |
| TATAGGGCTGACAACTAAAG+AGG | - | chr7_3:8105117-8105136 | Msa1092060:intron | 40.0% | |
| GACACTGCTTACTTCACAAA+CGG | - | chr7_3:8105139-8105158 | Msa1092060:intron | 40.0% | |
| CCTTATATATGCGAGAAAGC+GGG | - | chr7_3:8105266-8105285 | Msa1092060:intron | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | - | chr7_3:8105313-8105332 | Msa1092060:intron | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | - | chr7_3:8105314-8105333 | Msa1092060:intron | 40.0% | |
| GTCAACACTACTTCTAATGG+CGG | - | chr7_3:8105374-8105393 | Msa1092060:intron | 40.0% | |
| !! | TGGATTTTTGCCGGTTGTTT+GGG | + | chr7_3:8105558-8105577 | None:intergenic | 40.0% |
| GGCAAAAATCCAGTTCTTCA+TGG | - | chr7_3:8105566-8105585 | Msa1092060:intron | 40.0% | |
| ! | TCTGCAATTTGCTCTTCAGT+GGG | + | chr7_3:8105671-8105690 | None:intergenic | 40.0% |
| ! | ATCTGCAATTTGCTCTTCAG+TGG | + | chr7_3:8105672-8105691 | None:intergenic | 40.0% |
| ATGCAAGCTTGATTTAAGGG+AGG | - | chr7_3:8105752-8105771 | Msa1092060:intron | 40.0% | |
| ! | GTACAAGCATGGCCTTTTAT+AGG | + | chr7_3:8106080-8106099 | None:intergenic | 40.0% |
| ! | GTGCAGCAAAATCAGTTTTC+TGG | + | chr7_3:8106313-8106332 | None:intergenic | 40.0% |
| CAAACCTGCACTACTTAACT+TGG | + | chr7_3:8106335-8106354 | None:intergenic | 40.0% | |
| AGCTATTATTGTGTACCCGA+CGG | + | chr7_3:8106380-8106399 | None:intergenic | 40.0% | |
| GGGTACACAATAATAGCTTG+TGG | - | chr7_3:8106382-8106401 | Msa1092060:intron | 40.0% | |
| AGAGTATGCAACACCATCTA+CGG | + | chr7_3:8106413-8106432 | None:intergenic | 40.0% | |
| CACACAAACTAATACTGCCA+TGG | + | chr7_3:8106452-8106471 | None:intergenic | 40.0% | |
| ATTAGTTAACTCCCCGACAA+CGG | - | chr7_3:8106663-8106682 | Msa1092060:intron | 40.0% | |
| ! | GGTTTGTCCCATCAAGTTTT+AGG | + | chr7_3:8106691-8106710 | None:intergenic | 40.0% |
| TATGATAAACCGTGCACTTG+CGG | + | chr7_3:8106712-8106731 | None:intergenic | 40.0% | |
| GTAAAGTAGAGGGTTTCAGT+TGG | - | chr7_3:8106814-8106833 | Msa1092060:intron | 40.0% | |
| !! | AAAAGGTGCCTTGGGATTAT+TGG | - | chr7_3:8106857-8106876 | Msa1092060:intron | 40.0% |
| ACGATGAACCAATAATCCCA+AGG | + | chr7_3:8106868-8106887 | None:intergenic | 40.0% | |
| TCAAACTGTGGAAACGAAAG+TGG | + | chr7_3:8107214-8107233 | None:intergenic | 40.0% | |
| GAGTAGACTTCTCTTGTCTT+TGG | + | chr7_3:8107349-8107368 | None:intergenic | 40.0% | |
| GTTCATCGTAGACATAGAGA+AGG | - | chr7_3:8107375-8107394 | Msa1092060:intron | 40.0% | |
| GAATGTTCCACAAGAAACTG+CGG | - | chr7_3:8107571-8107590 | Msa1092060:intron | 40.0% | |
| AATGTTCCACAAGAAACTGC+GGG | - | chr7_3:8107572-8107591 | Msa1092060:intron | 40.0% | |
| TCCTAAGCAAAAGCAGCAAA+AGG | - | chr7_3:8107629-8107648 | Msa1092060:intron | 40.0% | |
| !!! | ACCTTTTGCTGCTTTTGCTT+AGG | + | chr7_3:8107633-8107652 | None:intergenic | 40.0% |
| ! | AAAGGAGTCTGGAGTTGATT+CGG | + | chr7_3:8107759-8107778 | None:intergenic | 40.0% |
| ! | AGTGTGGCTGAGAAGAATTT+TGG | - | chr7_3:8107957-8107976 | Msa1092060:intron | 40.0% |
| TTGGAACGTCCATGAAAAAC+TGG | + | chr7_3:8108060-8108079 | None:intergenic | 40.0% | |
| ! | TCTGCAATTTGCTCTTCAGT+GGG | + | chr7_3:8105671-8105690 | None:intergenic | 40.0% |
| ! | ATCTGCAATTTGCTCTTCAG+TGG | + | chr7_3:8105672-8105691 | None:intergenic | 40.0% |
| TGGAAAGCTTGATTTAAGGG+AGG | - | chr7_3:8108227-8108246 | Msa1092060:intron | 40.0% | |
| TTACTCTTCGCCATTAAGAC+TGG | - | chr7_3:8108302-8108321 | Msa1092060:intron | 40.0% | |
| AAAATCTAAGTTGCACCACC+TGG | - | chr7_3:8105852-8105871 | Msa1092060:intron | 40.0% | |
| ! | GTACAAGCATGGCCTTTTAT+AGG | + | chr7_3:8106080-8106099 | None:intergenic | 40.0% |
| CCATGATGCCTAATATCAGT+GGG | + | chr7_3:8108676-8108695 | None:intergenic | 40.0% | |
| ACCATGATGCCTAATATCAG+TGG | + | chr7_3:8108677-8108696 | None:intergenic | 40.0% | |
| AAGCAAGTTGTTATGTGGCT+AGG | + | chr7_3:8108888-8108907 | None:intergenic | 40.0% | |
| GTGGTAAGCAAGTTGTTATG+TGG | + | chr7_3:8108893-8108912 | None:intergenic | 40.0% | |
| CTGCCTAATAGGTTGTTATG+TGG | + | chr7_3:8108912-8108931 | None:intergenic | 40.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr7_3:8105090-8105109 | None:intergenic | 45.0% | |
| CTGCTTACTTCACAAACGGT+TGG | - | chr7_3:8105143-8105162 | Msa1092060:intron | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | - | chr7_3:8105148-8105167 | Msa1092060:intron | 45.0% | |
| CCCGCTTTCTCGCATATATA+AGG | + | chr7_3:8105269-8105288 | None:intergenic | 45.0% | |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr7_3:8105554-8105573 | None:intergenic | 45.0% |
| !! | ATTTTTGCCGGTTGTTTGGG+AGG | + | chr7_3:8105555-8105574 | None:intergenic | 45.0% |
| !! | CTGGATTTTTGCCGGTTGTT+TGG | + | chr7_3:8105559-8105578 | None:intergenic | 45.0% |
| ! | TTCTAGGTGGTGCTAGTACT+TGG | + | chr7_3:8105930-8105949 | None:intergenic | 45.0% |
| GCTAGCTAGACTATTCTAGG+TGG | + | chr7_3:8105943-8105962 | None:intergenic | 45.0% | |
| GGTGCTAGCTAGACTATTCT+AGG | + | chr7_3:8105946-8105965 | None:intergenic | 45.0% | |
| AAGAGATGCACCTCCTCTAT+AGG | - | chr7_3:8105983-8106002 | Msa1092060:intron | 45.0% | |
| ACATCACGATGGTACAAGCA+TGG | + | chr7_3:8106091-8106110 | None:intergenic | 45.0% | |
| CCATGATGCCTGATATCAGT+GGG | + | chr7_3:8106205-8106224 | None:intergenic | 45.0% | |
| ACCATGATGCCTGATATCAG+TGG | + | chr7_3:8106206-8106225 | None:intergenic | 45.0% | |
| GTGTAGATTAGGATCCTCAG+CGG | - | chr7_3:8106282-8106301 | Msa1092060:intron | 45.0% | |
| TGTAGATTAGGATCCTCAGC+GGG | - | chr7_3:8106283-8106302 | Msa1092060:intron | 45.0% | |
| TGCACCAAGTTAAGTAGTGC+AGG | - | chr7_3:8106328-8106347 | Msa1092060:intron | 45.0% | |
| AAGTTGTCACCATCAACCGT+CGG | - | chr7_3:8106361-8106380 | Msa1092060:intron | 45.0% | |
| AACGGCGCCTAAAACTTGAT+GGG | - | chr7_3:8106681-8106700 | Msa1092060:intron | 45.0% | |
| ! | AAACTCTCACTGGACTTGGT+CGG | + | chr7_3:8106985-8107004 | None:intergenic | 45.0% |
| AGGTAAACTCTCACTGGACT+TGG | + | chr7_3:8106989-8107008 | None:intergenic | 45.0% | |
| TGCTAGAGGTAAACTCTCAC+TGG | + | chr7_3:8106995-8107014 | None:intergenic | 45.0% | |
| ! | CAAACGCGGAGCTTTGATAT+TGG | + | chr7_3:8107143-8107162 | None:intergenic | 45.0% |
| ACTGTGGAAACGAAAGTGGA+GGG | + | chr7_3:8107210-8107229 | None:intergenic | 45.0% | |
| AACTGTGGAAACGAAAGTGG+AGG | + | chr7_3:8107211-8107230 | None:intergenic | 45.0% | |
| AAAAAGCCCGCAGTTTCTTG+TGG | + | chr7_3:8107581-8107600 | None:intergenic | 45.0% | |
| ! | ACAAGAAACTGCGGGCTTTT+TGG | - | chr7_3:8107580-8107599 | Msa1092060:intron | 45.0% |
| AAGCAGCAAAAGGTTGTCCT+CGG | - | chr7_3:8107639-8107658 | Msa1092060:intron | 45.0% | |
| TGGAGCAAAAGAAAGGAGTC+TGG | + | chr7_3:8107770-8107789 | None:intergenic | 45.0% | |
| CGAGTCTTGGAGCAAAAGAA+AGG | + | chr7_3:8107777-8107796 | None:intergenic | 45.0% | |
| ACATCACGATGGTACAAGCA+TGG | + | chr7_3:8106091-8106110 | None:intergenic | 45.0% | |
| CCCACTGATATTAGGCATCA+TGG | - | chr7_3:8108673-8108692 | Msa1092060:CDS | 45.0% | |
| CCATGATGCCTGATATCAGT+GGG | + | chr7_3:8106205-8106224 | None:intergenic | 45.0% | |
| ACCATGATGCCTGATATCAG+TGG | + | chr7_3:8106206-8106225 | None:intergenic | 45.0% | |
| TAACAACCTATTAGGCAGCC+TGG | - | chr7_3:8108914-8108933 | Msa1092060:CDS | 45.0% | |
| AACAACCTATTAGGCAGCCT+GGG | - | chr7_3:8108915-8108934 | Msa1092060:CDS | 45.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr7_3:8105082-8105101 | Msa1092060:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr7_3:8105092-8105111 | Msa1092060:intron | 50.0% | |
| GCAAGAGGGAGACAAGACAA+AGG | - | chr7_3:8105328-8105347 | Msa1092060:intron | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | - | chr7_3:8105526-8105545 | Msa1092060:intron | 50.0% | |
| ! | TTGGAGCGTCCATGAAGAAC+TGG | + | chr7_3:8105578-8105597 | None:intergenic | 50.0% |
| CCCACTGATATCAGGCATCA+TGG | - | chr7_3:8106202-8106221 | Msa1092060:intron | 50.0% | |
| AGTTGTCACCATCAACCGTC+GGG | - | chr7_3:8106362-8106381 | Msa1092060:intron | 50.0% | |
| ATTGTGTACCCGACGGTTGA+TGG | + | chr7_3:8106373-8106392 | None:intergenic | 50.0% | |
| !!! | AAGTTTTAGGCGCCGTTGTC+GGG | + | chr7_3:8106678-8106697 | None:intergenic | 50.0% |
| !!! | CAAGTTTTAGGCGCCGTTGT+CGG | + | chr7_3:8106679-8106698 | None:intergenic | 50.0% |
| CAACGGCGCCTAAAACTTGA+TGG | - | chr7_3:8106680-8106699 | Msa1092060:intron | 50.0% | |
| !! | AAGAGAGCATCGTTCCGACA+AGG | - | chr7_3:8106741-8106760 | Msa1092060:intron | 50.0% |
| ! | CGGTGCTAGACTATTCTAGG+TGG | + | chr7_3:8108418-8108437 | None:intergenic | 50.0% |
| ! | TGGCGGTGCTAGACTATTCT+AGG | + | chr7_3:8108421-8108440 | None:intergenic | 50.0% |
| GAGAGTTGCACCTCCTCTAT+AGG | - | chr7_3:8108454-8108473 | Msa1092060:intron | 50.0% | |
| CCCACTGATATCAGGCATCA+TGG | - | chr7_3:8106202-8106221 | Msa1092060:intron | 50.0% | |
| TTATGCCCAGGCTGCCTAAT+AGG | + | chr7_3:8108923-8108942 | None:intergenic | 50.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | + | chr7_3:8105513-8105532 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | + | chr7_3:8105514-8105533 | None:intergenic | 55.0% | |
| ! | GTTTTCTGGATCTCCCGCTG+AGG | + | chr7_3:8106299-8106318 | None:intergenic | 55.0% |
| GCTTGTGGCTCATCCGTAGA+TGG | - | chr7_3:8106397-8106416 | Msa1092060:intron | 55.0% | |
| ! | TTTGAGAGCGCGATCAGCCA+TGG | - | chr7_3:8106432-8106451 | Msa1092060:intron | 55.0% |
| !!! | AGTTTTAGGCGCCGTTGTCG+GGG | + | chr7_3:8106677-8106696 | None:intergenic | 55.0% |
| TGGGACAAACCGCAAGTGCA+CGG | - | chr7_3:8106700-8106719 | Msa1092060:intron | 55.0% | |
| GTGAGGGGCTAAAGGGAAAC+CGG | + | chr7_3:8106958-8106977 | None:intergenic | 55.0% | |
| CGGAAAGGTGAGGGGCTAAA+GGG | + | chr7_3:8106965-8106984 | None:intergenic | 55.0% | |
| TCGGAAAGGTGAGGGGCTAA+AGG | + | chr7_3:8106966-8106985 | None:intergenic | 55.0% | |
| ! | GACTTGGTCGGAAAGGTGAG+GGG | + | chr7_3:8106973-8106992 | None:intergenic | 55.0% |
| ! | GGACTTGGTCGGAAAGGTGA+GGG | + | chr7_3:8106974-8106993 | None:intergenic | 55.0% |
| ! | TGGACTTGGTCGGAAAGGTG+AGG | + | chr7_3:8106975-8106994 | None:intergenic | 55.0% |
| ! | CTCACTGGACTTGGTCGGAA+AGG | + | chr7_3:8106980-8106999 | None:intergenic | 55.0% |
| CAGCAAAAGGTTGTCCTCGG+AGG | - | chr7_3:8107642-8107661 | Msa1092060:intron | 55.0% | |
| CAAAAGGTTGTCCTCGGAGG+TGG | - | chr7_3:8107645-8107664 | Msa1092060:intron | 55.0% | |
| CCCAAGTCAGAAGCTTGGCA+CGG | + | chr7_3:8107697-8107716 | None:intergenic | 55.0% | |
| CCGTGCCAAGCTTCTGACTT+GGG | - | chr7_3:8107694-8107713 | Msa1092060:intron | 55.0% | |
| ! | CGTGCCAAGCTTCTGACTTG+GGG | - | chr7_3:8107695-8107714 | Msa1092060:intron | 55.0% |
| !! | GTGCCAAGCTTCTGACTTGG+GGG | - | chr7_3:8107696-8107715 | Msa1092060:intron | 55.0% |
| TCTCCCCCAAGTCAGAAGCT+TGG | + | chr7_3:8107702-8107721 | None:intergenic | 55.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | - | chr7_3:8105499-8105518 | Msa1092060:intron | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | - | chr7_3:8105505-8105524 | Msa1092060:intron | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | + | chr7_3:8105515-8105534 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | - | chr7_3:8105545-8105564 | Msa1092060:intron | 60.0% | |
| CGGCCGTGCCAATGTTAGCA+CGG | - | chr7_3:8107670-8107689 | Msa1092060:intron | 60.0% | |
| GGCCGTGCCAATGTTAGCAC+GGG | - | chr7_3:8107671-8107690 | Msa1092060:intron | 60.0% | |
| GGCCCGTGCTAACATTGGCA+CGG | + | chr7_3:8107676-8107695 | None:intergenic | 60.0% | |
| GCCGTGCCAAGCTTCTGACT+TGG | - | chr7_3:8107693-8107712 | Msa1092060:intron | 60.0% | |
| GGTTGTCCTCGGAGGTGGCA+CGG | - | chr7_3:8107650-8107669 | Msa1092060:intron | 65.0% | |
| GGCACGGCCCGTGCTAACAT+TGG | + | chr7_3:8107681-8107700 | None:intergenic | 65.0% | |
| ! | GCACGGCCGTGCCACCTCCG+AGG | + | chr7_3:8107659-8107678 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 8104968 | 8109011 | 8104968 | ID=Msa1092060;Name=Msa1092060 |
| chr7_3 | mRNA | 8104968 | 8109011 | 8104968 | ID=Msa1092060-mRNA-1;Parent=Msa1092060;Name=Msa1092060-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0|0|0.75|0.33|0.25|4|0|150 |
| chr7_3 | exon | 8109003 | 8109011 | 8109003 | ID=Msa1092060-mRNA-1:exon:2428;Parent=Msa1092060-mRNA-1 |
| chr7_3 | exon | 8108743 | 8108948 | 8108743 | ID=Msa1092060-mRNA-1:exon:2427;Parent=Msa1092060-mRNA-1 |
| chr7_3 | exon | 8108485 | 8108714 | 8108485 | ID=Msa1092060-mRNA-1:exon:2426;Parent=Msa1092060-mRNA-1 |
| chr7_3 | exon | 8104968 | 8104975 | 8104968 | ID=Msa1092060-mRNA-1:exon:2425;Parent=Msa1092060-mRNA-1 |
| chr7_3 | CDS | 8109003 | 8109011 | 8109003 | ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1 |
| chr7_3 | CDS | 8108743 | 8108948 | 8108743 | ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1 |
| chr7_3 | CDS | 8108485 | 8108714 | 8108485 | ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1 |
| chr7_3 | CDS | 8104968 | 8104975 | 8104968 | ID=Msa1092060-mRNA-1:cds;Parent=Msa1092060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
