Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092070 | XP_024636626.1 | 93.119 | 218 | 15 | 0 | 4 | 221 | 36 | 253 | 5.34e-144 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092070 | sp|Q8RYD1|REM16_ARATH | 56.250 | 96 | 41 | 1 | 4 | 98 | 38 | 133 | 2.08e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092070 | A0A396JGK5 | 93.119 | 218 | 15 | 0 | 4 | 221 | 36 | 253 | 2.55e-144 | 413 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1092070 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092070 | MtrunA17_Chr1g0154241 | 93.119 | 218 | 15 | 0 | 4 | 221 | 36 | 253 | 4.92e-148 | 413 |
| Msa1092070 | MtrunA17_Chr1g0154101 | 58.712 | 264 | 62 | 4 | 4 | 221 | 197 | 459 | 3.26e-89 | 280 |
| Msa1092070 | MtrunA17_Chr1g0154101 | 75.000 | 124 | 31 | 0 | 4 | 127 | 40 | 163 | 2.77e-59 | 200 |
| Msa1092070 | MtrunA17_Chr1g0154211 | 63.380 | 213 | 70 | 2 | 4 | 213 | 37 | 244 | 1.95e-88 | 266 |
| Msa1092070 | MtrunA17_Chr1g0154251 | 59.031 | 227 | 79 | 5 | 4 | 217 | 41 | 266 | 2.49e-79 | 246 |
| Msa1092070 | MtrunA17_Chr1g0154111 | 63.107 | 206 | 53 | 3 | 4 | 208 | 41 | 224 | 7.13e-78 | 245 |
| Msa1092070 | MtrunA17_Chr1g0154111 | 55.507 | 227 | 66 | 8 | 4 | 221 | 368 | 568 | 1.60e-63 | 207 |
| Msa1092070 | MtrunA17_Chr1g0154191 | 58.482 | 224 | 46 | 5 | 4 | 221 | 37 | 219 | 3.09e-74 | 229 |
| Msa1092070 | MtrunA17_Chr1g0154151 | 53.125 | 224 | 58 | 4 | 1 | 221 | 16 | 195 | 1.30e-66 | 209 |
| Msa1092070 | MtrunA17_Chr1g0154171 | 54.751 | 221 | 59 | 5 | 4 | 221 | 37 | 219 | 7.51e-62 | 197 |
| Msa1092070 | MtrunA17_Chr1g0154131 | 72.000 | 125 | 35 | 0 | 4 | 128 | 40 | 164 | 5.22e-58 | 190 |
| Msa1092070 | MtrunA17_Chr1g0154131 | 52.941 | 204 | 44 | 4 | 4 | 206 | 197 | 349 | 9.17e-58 | 190 |
| Msa1092070 | MtrunA17_Chr1g0154161 | 78.095 | 105 | 22 | 1 | 4 | 108 | 45 | 148 | 1.11e-50 | 167 |
| Msa1092070 | MtrunA17_Chr1g0154071 | 69.421 | 121 | 37 | 0 | 4 | 124 | 170 | 290 | 1.12e-50 | 172 |
| Msa1092070 | MtrunA17_Chr1g0154071 | 73.267 | 101 | 27 | 0 | 4 | 104 | 42 | 142 | 4.56e-46 | 159 |
| Msa1092070 | MtrunA17_Chr1g0154041 | 37.209 | 86 | 53 | 1 | 5 | 90 | 31 | 115 | 1.03e-13 | 69.7 |
| Msa1092070 | MtrunA17_Chr3g0131891 | 36.709 | 79 | 50 | 0 | 5 | 83 | 35 | 113 | 8.05e-11 | 60.8 |
| Msa1092070 | MtrunA17_Chr7g0233561 | 35.443 | 79 | 51 | 0 | 5 | 83 | 34 | 112 | 8.75e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092070 | AT4G33280.2 | 56.250 | 96 | 41 | 1 | 4 | 98 | 38 | 133 | 5.95e-30 | 113 |
| Msa1092070 | AT4G33280.1 | 56.250 | 96 | 41 | 1 | 4 | 98 | 38 | 133 | 2.12e-29 | 112 |
| Msa1092070 | AT4G33280.3 | 56.250 | 96 | 41 | 1 | 4 | 98 | 38 | 133 | 3.35e-29 | 113 |
| Msa1092070 | AT4G34400.2 | 37.349 | 83 | 52 | 0 | 4 | 86 | 30 | 112 | 1.17e-15 | 75.5 |
| Msa1092070 | AT4G34400.1 | 37.349 | 83 | 52 | 0 | 4 | 86 | 30 | 112 | 1.17e-15 | 75.5 |
| Msa1092070 | AT3G06220.1 | 28.182 | 110 | 71 | 2 | 5 | 114 | 25 | 126 | 6.29e-13 | 65.1 |
| Msa1092070 | AT5G60130.5 | 38.636 | 88 | 49 | 2 | 4 | 86 | 28 | 115 | 6.12e-12 | 63.9 |
| Msa1092070 | AT3G18990.2 | 33.673 | 98 | 56 | 1 | 5 | 93 | 22 | 119 | 7.87e-12 | 64.3 |
| Msa1092070 | AT3G18990.1 | 33.673 | 98 | 56 | 1 | 5 | 93 | 22 | 119 | 9.10e-12 | 63.9 |
| Msa1092070 | AT5G60130.3 | 38.636 | 88 | 49 | 2 | 4 | 86 | 2 | 89 | 1.08e-11 | 63.5 |
| Msa1092070 | AT5G60130.1 | 38.636 | 88 | 49 | 2 | 4 | 86 | 28 | 115 | 1.32e-11 | 63.5 |
| Msa1092070 | AT5G60130.4 | 38.636 | 88 | 49 | 2 | 4 | 86 | 25 | 112 | 1.34e-11 | 63.5 |
| Msa1092070 | AT5G60130.2 | 34.146 | 123 | 65 | 5 | 4 | 121 | 28 | 139 | 1.37e-11 | 63.2 |
| Msa1092070 | AT3G06160.1 | 36.000 | 75 | 48 | 0 | 4 | 78 | 39 | 113 | 2.30e-11 | 62.8 |
| Msa1092070 | AT3G06160.5 | 36.000 | 75 | 48 | 0 | 4 | 78 | 24 | 98 | 2.45e-11 | 62.8 |
| Msa1092070 | AT3G06160.4 | 36.000 | 75 | 48 | 0 | 4 | 78 | 24 | 98 | 2.45e-11 | 62.8 |
| Msa1092070 | AT3G06160.3 | 36.000 | 75 | 48 | 0 | 4 | 78 | 24 | 98 | 2.45e-11 | 62.8 |
| Msa1092070 | AT3G06160.2 | 36.000 | 75 | 48 | 0 | 4 | 78 | 83 | 157 | 3.14e-11 | 62.8 |
Find 48 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 7_3:-8109619 | None:intergenic |
| CCTGAAAATGTGACCCTTAA+AGG | 0.191053 | 7_3:+8109605 | Msa1092070:CDS |
| GCTGGTCTTTCCCGCTTCTT+AGG | 0.263121 | 7_3:-8110139 | None:intergenic |
| GTCTTTCCCGCTTCTTAGGC+TGG | 0.335197 | 7_3:-8110135 | None:intergenic |
| CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 7_3:-8110112 | None:intergenic |
| AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 7_3:+8109930 | Msa1092070:CDS |
| CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 7_3:+8110157 | Msa1092070:CDS |
| GTGGAGTTGTGTGGAATATA+TGG | 0.388254 | 7_3:+8109633 | Msa1092070:CDS |
| TCCCGCTTCTTAGGCTGGCC+AGG | 0.416938 | 7_3:-8110130 | None:intergenic |
| CGGGAAAGCAATTGTTGATT+GGG | 0.417936 | 7_3:+8110180 | Msa1092070:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 7_3:+8109824 | Msa1092070:CDS |
| GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 7_3:-8110040 | None:intergenic |
| AACTTCGTTAACAGGCTTCT+CGG | 0.427121 | 7_3:-8110104 | None:intergenic |
| GCGGGAAAGCAATTGTTGAT+TGG | 0.441564 | 7_3:+8110179 | Msa1092070:CDS |
| TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 7_3:+8110027 | Msa1092070:CDS |
| TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 7_3:+8110033 | Msa1092070:CDS |
| GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 7_3:+8109899 | Msa1092070:CDS |
| AGAGCCCGCTTTCTCGCATA+AGG | 0.473371 | 7_3:-8109798 | None:intergenic |
| TCTTACTTTGTTAGAAAATG+TGG | 0.473474 | 7_3:+8109818 | Msa1092070:CDS |
| GACACTGTTTACTTCACAAA+CGG | 0.478703 | 7_3:+8109671 | Msa1092070:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 7_3:-8109618 | None:intergenic |
| GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 7_3:+8110073 | Msa1092070:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 7_3:+8109680 | Msa1092070:CDS |
| CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 7_3:+8110112 | Msa1092070:CDS |
| GCCTGGCCAGCCTAAGAAGC+GGG | 0.539973 | 7_3:+8110129 | Msa1092070:CDS |
| CTGTTTACTTCACAAACGGT+TGG | 0.547920 | 7_3:+8109675 | Msa1092070:CDS |
| AATGAAAAGACTTATAATGC+TGG | 0.548214 | 7_3:+8110001 | Msa1092070:CDS |
| GCAAAATCAGCTACTTCTGG+CGG | 0.552462 | 7_3:+8110160 | Msa1092070:CDS |
| GAAAGCAATTGTTGATTGGG+TGG | 0.553194 | 7_3:+8110183 | Msa1092070:CDS |
| CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 7_3:-8110039 | None:intergenic |
| CAAAATCAGCTACTTCTGGC+GGG | 0.569629 | 7_3:+8110161 | Msa1092070:CDS |
| GATTGGGTGGCTTGTAGCAA+AGG | 0.576411 | 7_3:+8110196 | Msa1092070:CDS |
| CGCCTGGCCAGCCTAAGAAG+CGG | 0.580416 | 7_3:+8110128 | Msa1092070:CDS |
| TATATGGCTGACAACTAAAG+AGG | 0.582468 | 7_3:+8109649 | Msa1092070:CDS |
| GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 7_3:+8109856 | Msa1092070:CDS |
| GAGACCTTATGCGAGAAAGC+GGG | 0.590946 | 7_3:+8109794 | Msa1092070:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.593357 | 7_3:-8109629 | None:intergenic |
| GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 7_3:+8110054 | Msa1092070:CDS |
| TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 7_3:+8109850 | Msa1092070:CDS |
| AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 7_3:+8109841 | Msa1092070:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 7_3:+8109624 | Msa1092070:CDS |
| CTTGTAGCAAAGGAAAACTC+AGG | 0.626481 | 7_3:+8110206 | Msa1092070:CDS |
| TGAGACCTTATGCGAGAAAG+CGG | 0.630542 | 7_3:+8109793 | Msa1092070:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 7_3:+8109614 | Msa1092070:CDS |
| GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 7_3:+8109902 | Msa1092070:CDS |
| TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 7_3:+8109914 | Msa1092070:CDS |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 7_3:+8109842 | Msa1092070:CDS |
| ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 7_3:-8110038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAGTTTTAATATTTCA+TGG | + | chr7_3:8109770-8109789 | Msa1092070:CDS | 15.0% |
| !!! | TTTGAAGTTTTAATATTTCA+TGG | + | chr7_3:8109770-8109789 | Msa1092070:CDS | 15.0% |
| !! | ATGTTTATACATTTATTTGC+AGG | + | chr7_3:8109541-8109560 | Msa1092070:intron | 20.0% |
| !! | ATGTTTATACATTTATTTGC+AGG | + | chr7_3:8109541-8109560 | Msa1092070:intron | 20.0% |
| !! | AAATTGGCTGAAAATGTTTT+AGG | - | chr7_3:8109572-8109591 | None:intergenic | 25.0% |
| !!! | AGGCAACTTTTTCTTTAAAT+TGG | - | chr7_3:8109588-8109607 | None:intergenic | 25.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | + | chr7_3:8109818-8109837 | Msa1092070:CDS | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | + | chr7_3:8109824-8109843 | Msa1092070:CDS | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | - | chr7_3:8109989-8110008 | None:intergenic | 25.0% |
| !! | AGCATTATAAGTCTTTTCAT+TGG | - | chr7_3:8110002-8110021 | None:intergenic | 25.0% |
| ! | AATGAAAAGACTTATAATGC+TGG | + | chr7_3:8110001-8110020 | Msa1092070:CDS | 25.0% |
| !! | AAATTGGCTGAAAATGTTTT+AGG | - | chr7_3:8109572-8109591 | None:intergenic | 25.0% |
| !!! | AGGCAACTTTTTCTTTAAAT+TGG | - | chr7_3:8109588-8109607 | None:intergenic | 25.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | + | chr7_3:8109818-8109837 | Msa1092070:CDS | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | + | chr7_3:8109824-8109843 | Msa1092070:CDS | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | - | chr7_3:8109989-8110008 | None:intergenic | 25.0% |
| !! | AGCATTATAAGTCTTTTCAT+TGG | - | chr7_3:8110002-8110021 | None:intergenic | 25.0% |
| ! | AATGAAAAGACTTATAATGC+TGG | + | chr7_3:8110001-8110020 | Msa1092070:CDS | 25.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | + | chr7_3:8109737-8109756 | Msa1092070:CDS | 30.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | + | chr7_3:8109737-8109756 | Msa1092070:CDS | 30.0% |
| TATATGGCTGACAACTAAAG+AGG | + | chr7_3:8109649-8109668 | Msa1092070:CDS | 35.0% | |
| GACACTGTTTACTTCACAAA+CGG | + | chr7_3:8109671-8109690 | Msa1092070:CDS | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | - | chr7_3:8109742-8109761 | None:intergenic | 35.0% | |
| !! | AATGCGGTTCTGAGAAATTT+CGG | + | chr7_3:8109930-8109949 | Msa1092070:CDS | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | - | chr7_3:8109977-8109996 | None:intergenic | 35.0% |
| TATATGGCTGACAACTAAAG+AGG | + | chr7_3:8109649-8109668 | Msa1092070:CDS | 35.0% | |
| GACACTGTTTACTTCACAAA+CGG | + | chr7_3:8109671-8109690 | Msa1092070:CDS | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | - | chr7_3:8109742-8109761 | None:intergenic | 35.0% | |
| !! | AATGCGGTTCTGAGAAATTT+CGG | + | chr7_3:8109930-8109949 | Msa1092070:CDS | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | - | chr7_3:8109977-8109996 | None:intergenic | 35.0% |
| !! | CCTTTAAGGGTCACATTTTC+AGG | - | chr7_3:8109608-8109627 | None:intergenic | 40.0% |
| CCTGAAAATGTGACCCTTAA+AGG | + | chr7_3:8109605-8109624 | Msa1092070:CDS | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | - | chr7_3:8109621-8109640 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | - | chr7_3:8109632-8109651 | None:intergenic | 40.0% | |
| GTGGAGTTGTGTGGAATATA+TGG | + | chr7_3:8109633-8109652 | Msa1092070:CDS | 40.0% | |
| CTGTTTACTTCACAAACGGT+TGG | + | chr7_3:8109675-8109694 | Msa1092070:CDS | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | + | chr7_3:8109841-8109860 | Msa1092070:CDS | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | + | chr7_3:8109842-8109861 | Msa1092070:CDS | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | + | chr7_3:8109899-8109918 | Msa1092070:CDS | 40.0% | |
| AACTTCGTTAACAGGCTTCT+CGG | - | chr7_3:8110107-8110126 | None:intergenic | 40.0% | |
| ! | CGGGAAAGCAATTGTTGATT+GGG | + | chr7_3:8110180-8110199 | Msa1092070:CDS | 40.0% |
| ! | GAAAGCAATTGTTGATTGGG+TGG | + | chr7_3:8110183-8110202 | Msa1092070:CDS | 40.0% |
| CTTGTAGCAAAGGAAAACTC+AGG | + | chr7_3:8110206-8110225 | Msa1092070:CDS | 40.0% | |
| !! | CCTTTAAGGGTCACATTTTC+AGG | - | chr7_3:8109608-8109627 | None:intergenic | 40.0% |
| CCTGAAAATGTGACCCTTAA+AGG | + | chr7_3:8109605-8109624 | Msa1092070:CDS | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | - | chr7_3:8109621-8109640 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | - | chr7_3:8109632-8109651 | None:intergenic | 40.0% | |
| GTGGAGTTGTGTGGAATATA+TGG | + | chr7_3:8109633-8109652 | Msa1092070:CDS | 40.0% | |
| CTGTTTACTTCACAAACGGT+TGG | + | chr7_3:8109675-8109694 | Msa1092070:CDS | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | + | chr7_3:8109841-8109860 | Msa1092070:CDS | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | + | chr7_3:8109842-8109861 | Msa1092070:CDS | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | + | chr7_3:8109899-8109918 | Msa1092070:CDS | 40.0% | |
| AACTTCGTTAACAGGCTTCT+CGG | - | chr7_3:8110107-8110126 | None:intergenic | 40.0% | |
| ! | CGGGAAAGCAATTGTTGATT+GGG | + | chr7_3:8110180-8110199 | Msa1092070:CDS | 40.0% |
| ! | GAAAGCAATTGTTGATTGGG+TGG | + | chr7_3:8110183-8110202 | Msa1092070:CDS | 40.0% |
| CTTGTAGCAAAGGAAAACTC+AGG | + | chr7_3:8110206-8110225 | Msa1092070:CDS | 40.0% | |
| CAACTCCACTAGGACCTTTA+AGG | - | chr7_3:8109622-8109641 | None:intergenic | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | + | chr7_3:8109680-8109699 | Msa1092070:CDS | 45.0% | |
| TGAGACCTTATGCGAGAAAG+CGG | + | chr7_3:8109793-8109812 | Msa1092070:CDS | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | + | chr7_3:8109902-8109921 | Msa1092070:CDS | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | + | chr7_3:8109914-8109933 | Msa1092070:CDS | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | - | chr7_3:8110082-8110101 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | - | chr7_3:8110086-8110105 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | - | chr7_3:8110160-8110179 | None:intergenic | 45.0% |
| CCAGCAAAATCAGCTACTTC+TGG | + | chr7_3:8110157-8110176 | Msa1092070:CDS | 45.0% | |
| GCAAAATCAGCTACTTCTGG+CGG | + | chr7_3:8110160-8110179 | Msa1092070:CDS | 45.0% | |
| CAAAATCAGCTACTTCTGGC+GGG | + | chr7_3:8110161-8110180 | Msa1092070:CDS | 45.0% | |
| GCGGGAAAGCAATTGTTGAT+TGG | + | chr7_3:8110179-8110198 | Msa1092070:CDS | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | - | chr7_3:8109622-8109641 | None:intergenic | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | + | chr7_3:8109680-8109699 | Msa1092070:CDS | 45.0% | |
| TGAGACCTTATGCGAGAAAG+CGG | + | chr7_3:8109793-8109812 | Msa1092070:CDS | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | + | chr7_3:8109902-8109921 | Msa1092070:CDS | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | + | chr7_3:8109914-8109933 | Msa1092070:CDS | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | - | chr7_3:8110082-8110101 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | - | chr7_3:8110086-8110105 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | - | chr7_3:8110160-8110179 | None:intergenic | 45.0% |
| CCAGCAAAATCAGCTACTTC+TGG | + | chr7_3:8110157-8110176 | Msa1092070:CDS | 45.0% | |
| GCAAAATCAGCTACTTCTGG+CGG | + | chr7_3:8110160-8110179 | Msa1092070:CDS | 45.0% | |
| CAAAATCAGCTACTTCTGGC+GGG | + | chr7_3:8110161-8110180 | Msa1092070:CDS | 45.0% | |
| GCGGGAAAGCAATTGTTGAT+TGG | + | chr7_3:8110179-8110198 | Msa1092070:CDS | 45.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | + | chr7_3:8109614-8109633 | Msa1092070:CDS | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | + | chr7_3:8109624-8109643 | Msa1092070:CDS | 50.0% | |
| GAGACCTTATGCGAGAAAGC+GGG | + | chr7_3:8109794-8109813 | Msa1092070:CDS | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | + | chr7_3:8110054-8110073 | Msa1092070:CDS | 50.0% | |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | - | chr7_3:8110083-8110102 | None:intergenic | 50.0% |
| !! | CGGTCTTTTTGCCGGTTGTT+TGG | - | chr7_3:8110087-8110106 | None:intergenic | 50.0% |
| ! | AGGCTTCTCGGTCTTTTTGC+CGG | - | chr7_3:8110095-8110114 | None:intergenic | 50.0% |
| CCAGGCGTAACTTCGTTAAC+AGG | - | chr7_3:8110115-8110134 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | + | chr7_3:8110112-8110131 | Msa1092070:CDS | 50.0% | |
| ! | GATTGGGTGGCTTGTAGCAA+AGG | + | chr7_3:8110196-8110215 | Msa1092070:CDS | 50.0% |
| GTGACCCTTAAAGGTCCTAG+TGG | + | chr7_3:8109614-8109633 | Msa1092070:CDS | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | + | chr7_3:8109624-8109643 | Msa1092070:CDS | 50.0% | |
| GAGACCTTATGCGAGAAAGC+GGG | + | chr7_3:8109794-8109813 | Msa1092070:CDS | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | + | chr7_3:8110054-8110073 | Msa1092070:CDS | 50.0% | |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | - | chr7_3:8110083-8110102 | None:intergenic | 50.0% |
| !! | CGGTCTTTTTGCCGGTTGTT+TGG | - | chr7_3:8110087-8110106 | None:intergenic | 50.0% |
| ! | AGGCTTCTCGGTCTTTTTGC+CGG | - | chr7_3:8110095-8110114 | None:intergenic | 50.0% |
| CCAGGCGTAACTTCGTTAAC+AGG | - | chr7_3:8110115-8110134 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | + | chr7_3:8110112-8110131 | Msa1092070:CDS | 50.0% | |
| ! | GATTGGGTGGCTTGTAGCAA+AGG | + | chr7_3:8110196-8110215 | Msa1092070:CDS | 50.0% |
| AGAGCCCGCTTTCTCGCATA+AGG | - | chr7_3:8109801-8109820 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | + | chr7_3:8109850-8109869 | Msa1092070:CDS | 55.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | - | chr7_3:8110041-8110060 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | - | chr7_3:8110042-8110061 | None:intergenic | 55.0% | |
| GTCTTTCCCGCTTCTTAGGC+TGG | - | chr7_3:8110138-8110157 | None:intergenic | 55.0% | |
| !! | GCTGGTCTTTCCCGCTTCTT+AGG | - | chr7_3:8110142-8110161 | None:intergenic | 55.0% |
| AGAGCCCGCTTTCTCGCATA+AGG | - | chr7_3:8109801-8109820 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | + | chr7_3:8109850-8109869 | Msa1092070:CDS | 55.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | - | chr7_3:8110041-8110060 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | - | chr7_3:8110042-8110061 | None:intergenic | 55.0% | |
| GTCTTTCCCGCTTCTTAGGC+TGG | - | chr7_3:8110138-8110157 | None:intergenic | 55.0% | |
| !! | GCTGGTCTTTCCCGCTTCTT+AGG | - | chr7_3:8110142-8110161 | None:intergenic | 55.0% |
| GCAAGAGGGCGACAAGGCAA+AGG | + | chr7_3:8109856-8109875 | Msa1092070:CDS | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | + | chr7_3:8110027-8110046 | Msa1092070:CDS | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | + | chr7_3:8110033-8110052 | Msa1092070:CDS | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | - | chr7_3:8110043-8110062 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | + | chr7_3:8110073-8110092 | Msa1092070:CDS | 60.0% | |
| GCAAGAGGGCGACAAGGCAA+AGG | + | chr7_3:8109856-8109875 | Msa1092070:CDS | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | + | chr7_3:8110027-8110046 | Msa1092070:CDS | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | + | chr7_3:8110033-8110052 | Msa1092070:CDS | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | - | chr7_3:8110043-8110062 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | + | chr7_3:8110073-8110092 | Msa1092070:CDS | 60.0% | |
| CGCCTGGCCAGCCTAAGAAG+CGG | + | chr7_3:8110128-8110147 | Msa1092070:CDS | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | + | chr7_3:8110129-8110148 | Msa1092070:CDS | 65.0% | |
| ! | TCCCGCTTCTTAGGCTGGCC+AGG | - | chr7_3:8110133-8110152 | None:intergenic | 65.0% |
| CGCCTGGCCAGCCTAAGAAG+CGG | + | chr7_3:8110128-8110147 | Msa1092070:CDS | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | + | chr7_3:8110129-8110148 | Msa1092070:CDS | 65.0% | |
| ! | TCCCGCTTCTTAGGCTGGCC+AGG | - | chr7_3:8110133-8110152 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 8109500 | 8110255 | 8109500 | ID=Msa1092070;Name=Msa1092070 |
| chr7_3 | mRNA | 8109500 | 8110255 | 8109500 | ID=Msa1092070-mRNA-1;Parent=Msa1092070;Name=Msa1092070-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|233 |
| chr7_3 | exon | 8109500 | 8109508 | 8109500 | ID=Msa1092070-mRNA-1:exon:2419;Parent=Msa1092070-mRNA-1 |
| chr7_3 | exon | 8109563 | 8110255 | 8109563 | ID=Msa1092070-mRNA-1:exon:2420;Parent=Msa1092070-mRNA-1 |
| chr7_3 | CDS | 8109500 | 8109508 | 8109500 | ID=Msa1092070-mRNA-1:cds;Parent=Msa1092070-mRNA-1 |
| chr7_3 | CDS | 8109563 | 8110255 | 8109563 | ID=Msa1092070-mRNA-1:cds;Parent=Msa1092070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
