AlfalfaGEDB | Msa1092110

M. sativa cultivar zhongmu-4 / Msa1092110

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092110	XP_039683162.1	80.921	304	28	2	1	304	1	274	2.16e-159	457

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092110	sp\|Q6P819\|CNOT9_XENTR	48.913	276	109	1	33	308	28	271	4.22e-81	251

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092110	A0A396GV60	80.392	306	28	3	1	304	1	276	1.02e-157	452

TFs/TRs:

Gene ID	Type	Classification
Msa1092110	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092110	MtrunA17_Chr7g0224601	80.392	306	28	3	1	304	1	276	1.96e-161	452
Msa1092110	MtrunA17_Chr1g0177151	57.895	266	80	1	14	279	20	253	1.09e-103	304
Msa1092110	MtrunA17_Chr3g0099561	56.679	277	88	1	28	304	26	270	5.59e-100	296
Msa1092110	MtrunA17_Chr8g0392781	50.737	339	100	4	1	304	11	317	1.39e-98	295
Msa1092110	MtrunA17_Chr5g0444621	67.619	210	68	0	100	309	60	269	4.36e-92	275
Msa1092110	MtrunA17_Chr6g0477171	67.895	190	61	0	88	277	52	241	5.45e-85	256
Msa1092110	MtrunA17_Chr3g0083821	68.085	94	30	0	103	196	37	130	2.17e-37	130
Msa1092110	MtrunA17_Chr3g0083811	58.763	97	40	0	208	304	1	97	1.03e-28	107
Msa1092110	MtrunA17_Chr5g0444631	86.792	53	7	0	134	186	4	56	4.94e-26	98.2
Msa1092110	MtrunA17_Chr6g0477181	70.588	51	15	0	1	51	11	61	3.51e-15	70.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092110	AT3G20800.1	53.795	303	102	3	7	304	14	283	7.58e-97	289
Msa1092110	AT5G12980.1	50.000	282	109	1	22	303	29	278	1.71e-88	268
Msa1092110	AT2G32550.3	36.726	226	117	4	86	294	39	255	1.79e-37	135
Msa1092110	AT2G32550.2	36.726	226	117	4	86	294	78	294	5.66e-37	135
Msa1092110	AT2G32550.1	40.116	172	100	2	126	294	29	200	8.07e-35	127

Find 51 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGCCCAATTTGAGCATTTA+AGG	0.127092	7_3:-8363788	Msa1092110:CDS
CGGAACTTGCACCTTTATTA+TGG	0.186230	7_3:-8365250	Msa1092110:CDS
CAAGCCTTAAATGCTCAAAT+TGG	0.232859	7_3:+8363784	None:intergenic
TAAGAGGATTGGGTTATTTC+CGG	0.242539	7_3:-8365270	Msa1092110:intron
CCTTTATTATGGAATTCTTA+TGG	0.279542	7_3:-8365239	Msa1092110:CDS
TCTCAAGAAATCCAGATCTT+TGG	0.292233	7_3:-8366720	Msa1092110:CDS
AAGGAAATCTATGCCTTCTT+TGG	0.298112	7_3:+8363076	None:intergenic
AATAGAGAAACTAACAGTTT+TGG	0.311116	7_3:+8362995	None:intergenic
TTTGGGCTGTGGTGCTAGAT+TGG	0.341570	7_3:+8366875	None:intergenic
GTTCCATGGATGCCATGCTT+TGG	0.343484	7_3:+8366857	None:intergenic
TTCCATGGATGCCATGCTTT+GGG	0.345713	7_3:+8366858	None:intergenic
CATAATAAAGGTGCAAGTTC+CGG	0.352274	7_3:+8365251	None:intergenic
GGGCTTGCAATGCATTAAAA+AGG	0.353362	7_3:-8362554	Msa1092110:CDS
CAATGTTCTGGAACTACTTC+AGG	0.355418	7_3:-8364438	Msa1092110:intron
CCATAAGAATTCCATAATAA+AGG	0.371929	7_3:+8365239	None:intergenic
AACTCGAGTGTGCAATGTTC+TGG	0.374857	7_3:-8364450	Msa1092110:CDS
AACTCAACAATCCTGATCTC+AGG	0.384176	7_3:-8366822	Msa1092110:CDS
TTGGGCTGTGGTGCTAGATT+GGG	0.395336	7_3:+8366876	None:intergenic
CTTGCTAGTCTTGGAGTCAT+TGG	0.399485	7_3:-8363765	Msa1092110:CDS
ATGGACAAAAGAAAAGTAGA+TGG	0.403757	7_3:+8366764	None:intergenic
CATTTAAGGCTTGCTAGTCT+TGG	0.414086	7_3:-8363774	Msa1092110:CDS
CTAACTCGCTTGTCGTTTGA+AGG	0.424446	7_3:+8363808	None:intergenic
TCACAACTTCTCCAAAGATC+TGG	0.432216	7_3:+8366709	None:intergenic
GGATGCCATGCTTTGGGCTG+TGG	0.432887	7_3:+8366864	None:intergenic
TCGCTTGTCGTTTGAAGGAA+TGG	0.449153	7_3:+8363813	None:intergenic
TTCAATAACAAGGCGTTCCA+TGG	0.458343	7_3:+8366843	None:intergenic
TGCCTACGCAGCATGGAAAT+CGG	0.460606	7_3:-8363029	Msa1092110:CDS
AAAATTATGTCAGATGATGA+TGG	0.481246	7_3:-8362816	Msa1092110:CDS
TGCTCTTCGTGTTCTCTCCA+AGG	0.482455	7_3:-8366794	Msa1092110:CDS
AGCCCAAAGCATGGCATCCA+TGG	0.487495	7_3:-8366860	Msa1092110:CDS
AGATTCAACAGCGGAATAGT+AGG	0.487502	7_3:+8364488	None:intergenic
AAGCCTTAAATGCTCAAATT+GGG	0.502413	7_3:+8363785	None:intergenic
GATGGTTTGATTTATGTTTG+TGG	0.502440	7_3:-8362798	Msa1092110:CDS
TCACAGGTTAACACCAAAGA+AGG	0.528410	7_3:-8363089	Msa1092110:intron
TCTTGGAGTCATTGGTGCAT+TGG	0.530074	7_3:-8363757	Msa1092110:CDS
TCCACTATGCCTACGCAGCA+TGG	0.546502	7_3:-8363036	Msa1092110:CDS
TGGACAAAAGAAAAGTAGAT+GGG	0.556897	7_3:+8366765	None:intergenic
ACTCAACAATCCTGATCTCA+GGG	0.561365	7_3:-8366821	Msa1092110:CDS
GATTGGGATGAAGCAGTTCG+AGG	0.563459	7_3:+8366892	None:intergenic
TCCGCTGTTGAATCTTACTC+AGG	0.564161	7_3:-8364480	Msa1092110:CDS
TCCATGCTGCGTAGGCATAG+TGG	0.580220	7_3:+8363035	None:intergenic
GAATTATCTCACTTCTCAGA+AGG	0.602747	7_3:+8363057	None:intergenic
TGCCGATTTCCATGCTGCGT+AGG	0.604124	7_3:+8363027	None:intergenic
AGTCATTGGTGCATTGGTGA+AGG	0.613240	7_3:-8363751	Msa1092110:intron
TAGCACCACAGCCCAAAGCA+TGG	0.626075	7_3:-8366869	Msa1092110:CDS
CACAAGAAGTACTTACGCGA+AGG	0.626242	7_3:+8362490	None:intergenic
AGTTTGATCAATTGATGTGA+AGG	0.628164	7_3:+8362708	None:intergenic
AACATGGTATTGGAAAGTGT+TGG	0.637520	7_3:-8362738	Msa1092110:CDS
GATTGTTGAGTTCAATAACA+AGG	0.670356	7_3:+8366833	None:intergenic
TGAGACAAAAGAGAATAACA+TGG	0.703854	7_3:+8362678	None:intergenic
GCCTGAGTAAGATTCAACAG+CGG	0.773865	7_3:+8364479	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTATTGTTTTTATTTTAG+GGG	-	chr7_3:8362774-8362793	Msa1092110:CDS	10.0%
!!!	AAAAAATTAACTTGAATAAT+TGG	-	chr7_3:8363238-8363257	Msa1092110:intron	10.0%
!!	TGATTAACATATATTAAAAT+GGG	+	chr7_3:8363893-8363912	None:intergenic	10.0%
!!	ATGATTAACATATATTAAAA+TGG	+	chr7_3:8363894-8363913	None:intergenic	10.0%
!!	TATGTTAATCATTATTAATT+AGG	-	chr7_3:8363902-8363921	Msa1092110:intron	10.0%
!!	TTGAAAACATAAATATAAAT+TGG	+	chr7_3:8364501-8364520	None:intergenic	10.0%
!!!	TTGATTTTCAAATATTTTAT+TGG	+	chr7_3:8365007-8365026	None:intergenic	10.0%
!!!	TTTTAAAGTTACTAATAAAT+TGG	+	chr7_3:8365842-8365861	None:intergenic	10.0%
!!!	ATTAGTAACTTTAAAATTTT+TGG	-	chr7_3:8365846-8365865	Msa1092110:intron	10.0%
!!!	ATTATTTTTATAATGTTCTT+AGG	-	chr7_3:8365942-8365961	Msa1092110:intron	10.0%
!!!	TTATTTTTATAATGTTCTTA+GGG	-	chr7_3:8365943-8365962	Msa1092110:intron	10.0%
!!	GAAATTATTATAATTAACAA+AGG	+	chr7_3:8366228-8366247	None:intergenic	10.0%
!!!	TTTATTGTTTTTATTTTAGG+GGG	-	chr7_3:8362775-8362794	Msa1092110:CDS	15.0%
!!!	AATGTCTTTATATGATTTTT+TGG	-	chr7_3:8363714-8363733	Msa1092110:intron	15.0%
!!!	AGAAAATGAAAATTTTCATT+TGG	-	chr7_3:8363820-8363839	Msa1092110:CDS	15.0%
!!!	TTTCATTTTTTAAGTTTAAG+AGG	-	chr7_3:8364070-8364089	Msa1092110:intron	15.0%
!!	GAAAAAAGTTATTATGTATT+TGG	-	chr7_3:8364334-8364353	Msa1092110:intron	15.0%
!!!	CTTGATGTTAATAATTTTTA+TGG	-	chr7_3:8365667-8365686	Msa1092110:intron	15.0%
!!!	AGATAGTTTTTAAAATAACA+AGG	+	chr7_3:8365878-8365897	None:intergenic	15.0%
!!	AAAATACATATTAGGAATTT+GGG	-	chr7_3:8366066-8366085	Msa1092110:intron	15.0%
!!	TTTAAAAAAAATAAGTGGTT+AGG	+	chr7_3:8366149-8366168	None:intergenic	15.0%
!!!	GATTCTTTAAAAAAAATAAG+TGG	+	chr7_3:8366154-8366173	None:intergenic	15.0%
!!	TAACAAAGGAAAAATAAATA+TGG	+	chr7_3:8366214-8366233	None:intergenic	15.0%
!!!	TCCATTTTTAATATCTTTCA+TGG	-	chr7_3:8362610-8362629	Msa1092110:intron	20.0%
!!!	CCATTTTTAATATCTTTCAT+GGG	-	chr7_3:8362611-8362630	Msa1092110:intron	20.0%
!!!	GAAGATTTGTTTCAATTTTA+AGG	-	chr7_3:8362922-8362941	Msa1092110:intron	20.0%
!!	TTAATAGGATGAAATGAAAT+AGG	-	chr7_3:8363167-8363186	Msa1092110:intron	20.0%
!!!	TTTGGATAACTATGATTTTT+TGG	-	chr7_3:8363732-8363751	Msa1092110:intron	20.0%
!!!	GGTGAGAATAATATTTTATT+AGG	-	chr7_3:8363923-8363942	Msa1092110:intron	20.0%
!!!	TAATATTTTATTAGGTGCTA+TGG	-	chr7_3:8363931-8363950	Msa1092110:intron	20.0%
!!!	TTTTTTAAGTTTAAGAGGAT+TGG	-	chr7_3:8364075-8364094	Msa1092110:intron	20.0%
!!!	TTTTTAAGTTTAAGAGGATT+GGG	-	chr7_3:8364076-8364095	Msa1092110:intron	20.0%
!!	TCAAAAGTTAAAAAAAAGCA+AGG	+	chr7_3:8364428-8364447	None:intergenic	20.0%
!!!	TTTTTTTAAAATTGTCCAAG+AGG	-	chr7_3:8364636-8364655	Msa1092110:intron	20.0%
!!	AGGAATGGATAAAAATATAA+AGG	+	chr7_3:8365531-8365550	None:intergenic	20.0%
!!	ACTCATAACAAAATAAGAAA+AGG	-	chr7_3:8365694-8365713	Msa1092110:intron	20.0%
!!!	ATTCCTAATATGTATTTTCA+AGG	+	chr7_3:8366064-8366083	None:intergenic	20.0%
!!	GAAAATACATATTAGGAATT+TGG	-	chr7_3:8366065-8366084	Msa1092110:intron	20.0%
!!	AAGACTCTGTAAAAATAAAT+TGG	+	chr7_3:8366399-8366418	None:intergenic	20.0%
!!	TTGTTTATATGAATTTGACT+TGG	-	chr7_3:8366419-8366438	Msa1092110:intron	20.0%
!!	ATATTAGTAACATAAGTGAA+TGG	+	chr7_3:8366471-8366490	None:intergenic	20.0%
!!	AAATTCTTTCATATTAACAC+AGG	-	chr7_3:8366781-8366800	Msa1092110:CDS	20.0%
!!	AATTCTTTCATATTAACACA+GGG	-	chr7_3:8366782-8366801	Msa1092110:CDS	20.0%
!	CCCATGAAAGATATTAAAAA+TGG	+	chr7_3:8362614-8362633	None:intergenic	25.0%
!!!	TTTATTTTAGGGGGTTTTTT+TGG	-	chr7_3:8362784-8362803	Msa1092110:CDS	25.0%
!!!	TTATTTTAGGGGGTTTTTTT+GGG	-	chr7_3:8362785-8362804	Msa1092110:CDS	25.0%
!	TGTTACAAAATTGCATTAGT+TGG	-	chr7_3:8362988-8363007	Msa1092110:intron	25.0%
!!	TTGTGATATTCTTTATTTCG+TGG	-	chr7_3:8363042-8363061	Msa1092110:CDS	25.0%
!!	TGTGATATTCTTTATTTCGT+GGG	-	chr7_3:8363043-8363062	Msa1092110:CDS	25.0%
!	TAAGAAAGAGATGATTAGAA+AGG	-	chr7_3:8363112-8363131	Msa1092110:intron	25.0%
!	GTAAGAATGTGATAGTTAAT+AGG	-	chr7_3:8363152-8363171	Msa1092110:intron	25.0%
!!	GATCTAGATTTTATGACAAA+TGG	+	chr7_3:8363415-8363434	None:intergenic	25.0%
!!	GTTCAAATATTTGTTGAGAA+AGG	+	chr7_3:8363629-8363648	None:intergenic	25.0%
!!	ATATGACTAGAATCTCATTT+TGG	+	chr7_3:8363762-8363781	None:intergenic	25.0%
!	CCATAAGAATTCCATAATAA+AGG	+	chr7_3:8364120-8364139	None:intergenic	25.0%
!	CCTTTATTATGGAATTCTTA+TGG	-	chr7_3:8364117-8364136	Msa1092110:intron	25.0%
!!	AGATTGATCATTTGTTACTA+AGG	-	chr7_3:8364261-8364280	Msa1092110:intron	25.0%
!!	TGTATGTGTCTTAATTTTAG+TGG	-	chr7_3:8364308-8364327	Msa1092110:intron	25.0%
!	AAATTGGTGAATGAATGAAA+CGG	+	chr7_3:8364485-8364504	None:intergenic	25.0%
!	ACAAATGAGACATGATTATA+AGG	-	chr7_3:8364569-8364588	Msa1092110:intron	25.0%
!	CAAATGAGACATGATTATAA+GGG	-	chr7_3:8364570-8364589	Msa1092110:intron	25.0%
!!!	ATCAATTGTCATTTTACAAC+CGG	+	chr7_3:8364723-8364742	None:intergenic	25.0%
!!	GATATATTGAAGTTATTTCC+TGG	+	chr7_3:8364849-8364868	None:intergenic	25.0%
!!	GAAATGACATTTTTGTATCA+GGG	+	chr7_3:8365147-8365166	None:intergenic	25.0%
!!	AGAAATGACATTTTTGTATC+AGG	+	chr7_3:8365148-8365167	None:intergenic	25.0%
!!	ACAAAAATGTCATTTCTCAA+TGG	-	chr7_3:8365151-8365170	Msa1092110:intron	25.0%
!!	AGAAATCTAGAACAATTAAG+AGG	+	chr7_3:8365196-8365215	None:intergenic	25.0%
!	TTGTGATGTGAAACTATATT+TGG	-	chr7_3:8365749-8365768	Msa1092110:intron	25.0%
!	GTTCCTTGAAAATACATATT+AGG	-	chr7_3:8366058-8366077	Msa1092110:intron	25.0%
!!	AATAGAGAAACTAACAGTTT+TGG	+	chr7_3:8366364-8366383	None:intergenic	25.0%
!	AAAATTATGTCAGATGATGA+TGG	-	chr7_3:8366540-8366559	Msa1092110:intron	25.0%
	GATTGTTGAGTTCAATAACA+AGG	+	chr7_3:8362526-8362545	None:intergenic	30.0%
	TGGACAAAAGAAAAGTAGAT+GGG	+	chr7_3:8362594-8362613	None:intergenic	30.0%
	ATGGACAAAAGAAAAGTAGA+TGG	+	chr7_3:8362595-8362614	None:intergenic	30.0%
!!!	TATTTTAGGGGGTTTTTTTG+GGG	-	chr7_3:8362786-8362805	Msa1092110:CDS	30.0%
	GTTCATTCTTTAGTGTATCA+TGG	-	chr7_3:8362847-8362866	Msa1092110:intron	30.0%
	TGAATCTACGAAGCATAAAA+AGG	-	chr7_3:8363087-8363106	Msa1092110:intron	30.0%
	TTCTATCATGAAAGTCAGAT+TGG	+	chr7_3:8363285-8363304	None:intergenic	30.0%
!!	CTCTAAGAGTATTACAAACA+AGG	+	chr7_3:8364243-8364262	None:intergenic	30.0%
	AGTTGGAAAATAAAAGGTGA+TGG	-	chr7_3:8364595-8364614	Msa1092110:intron	30.0%
!	CAGATAGTGATAATTTTTCC+AGG	-	chr7_3:8364828-8364847	Msa1092110:intron	30.0%
	AAAACGACTACATACACAAA+TGG	-	chr7_3:8365034-8365053	Msa1092110:intron	30.0%
	TCATGGATTTGAATTCTCTA+CGG	-	chr7_3:8365388-8365407	Msa1092110:intron	30.0%
	AGCTGCACATAATTAAGAAA+TGG	+	chr7_3:8365502-8365521	None:intergenic	30.0%
	AAGCCTTAAATGCTCAAATT+GGG	+	chr7_3:8365574-8365593	None:intergenic	30.0%
!!	CAGCAAAAAACTACTTTTAG+AGG	+	chr7_3:8365981-8366000	None:intergenic	30.0%
	TGACTATCATGTACAAAAGA+AGG	+	chr7_3:8366250-8366269	None:intergenic	30.0%
	GAATGGCAAAAAAATTCAGA+AGG	+	chr7_3:8366454-8366473	None:intergenic	30.0%
!	GATGGTTTGATTTATGTTTG+TGG	-	chr7_3:8366558-8366577	Msa1092110:intron	30.0%
!!!	AGTAGTTCAAGTTTTGAACA+TGG	-	chr7_3:8366602-8366621	Msa1092110:intron	30.0%
!!!	TCAAGTTTTGAACATGGTAT+TGG	-	chr7_3:8366608-8366627	Msa1092110:intron	30.0%
	AGTTTGATCAATTGATGTGA+AGG	+	chr7_3:8366651-8366670	None:intergenic	30.0%
	TGAGACAAAAGAGAATAACA+TGG	+	chr7_3:8366681-8366700	None:intergenic	30.0%
!	TTTACAGTTTTCAGCATGTT+TGG	+	chr7_3:8366834-8366853	None:intergenic	30.0%
	AAGTAGATGGGTAAAAACCT+TGG	+	chr7_3:8362582-8362601	None:intergenic	35.0%
	TCTCAAGAAATCCAGATCTT+TGG	-	chr7_3:8362636-8362655	Msa1092110:intron	35.0%
	TTATGCTTCGTAGATTCACA+GGG	+	chr7_3:8363085-8363104	None:intergenic	35.0%
	TTTATGCTTCGTAGATTCAC+AGG	+	chr7_3:8363086-8363105	None:intergenic	35.0%
	TTTGTGATATGCAAGTGAGA+TGG	+	chr7_3:8363439-8363458	None:intergenic	35.0%
	CGCTTTACATGTTCTCTTAA+AGG	-	chr7_3:8363493-8363512	Msa1092110:intron	35.0%
	TAGATAATTCCTCGAAGAGT+TGG	+	chr7_3:8363587-8363606	None:intergenic	35.0%
!	TAAGAGGATTGGGTTATTTC+CGG	-	chr7_3:8364086-8364105	Msa1092110:intron	35.0%
!	CATAATAAAGGTGCAAGTTC+CGG	+	chr7_3:8364108-8364127	None:intergenic	35.0%
	ACATGATTATAAGGGAGAGT+TGG	-	chr7_3:8364578-8364597	Msa1092110:intron	35.0%
	AGGGAGAGTTGGAAAATAAA+AGG	-	chr7_3:8364589-8364608	Msa1092110:intron	35.0%
	TAAGTTCAAATCTCCTCAAC+CGG	-	chr7_3:8364701-8364720	Msa1092110:intron	35.0%
!	CATGTTTTCTTTACAGTGTG+TGG	-	chr7_3:8365114-8365133	Msa1092110:intron	35.0%
	AGTACTCTGAATAAGAGTCA+TGG	-	chr7_3:8365371-8365390	Msa1092110:intron	35.0%
	GGTTAGATGTAGTCAATTGT+AGG	-	chr7_3:8365413-8365432	Msa1092110:intron	35.0%
	TAGCCCAATTTGAGCATTTA+AGG	-	chr7_3:8365568-8365587	Msa1092110:intron	35.0%
	CAAGCCTTAAATGCTCAAAT+TGG	+	chr7_3:8365575-8365594	None:intergenic	35.0%
!	AAACTTACCAAGAGCACAAT+AGG	+	chr7_3:8366030-8366049	None:intergenic	35.0%
!	CTTTTGTACATGATAGTCAC+AGG	-	chr7_3:8366251-8366270	Msa1092110:intron	35.0%
	AAGGAAATCTATGCCTTCTT+TGG	+	chr7_3:8366283-8366302	None:intergenic	35.0%
	GAATTATCTCACTTCTCAGA+AGG	+	chr7_3:8366302-8366321	None:intergenic	35.0%
	ATCAAAGTTATCATCTCTGC+AGG	-	chr7_3:8366497-8366516	Msa1092110:intron	35.0%
!	AACATGGTATTGGAAAGTGT+TGG	-	chr7_3:8366618-8366637	Msa1092110:intron	35.0%
	TGAAACTTCTTAACCAACCT+AGG	+	chr7_3:8366708-8366727	None:intergenic	35.0%
!	TTCAATAACAAGGCGTTCCA+TGG	+	chr7_3:8362516-8362535	None:intergenic	40.0%
	AACTCAACAATCCTGATCTC+AGG	-	chr7_3:8362534-8362553	Msa1092110:CDS	40.0%
	ACTCAACAATCCTGATCTCA+GGG	-	chr7_3:8362535-8362554	Msa1092110:CDS	40.0%
	TCACAACTTCTCCAAAGATC+TGG	+	chr7_3:8362650-8362669	None:intergenic	40.0%
	GGATTACATGTGTGTGTTCA+GGG	+	chr7_3:8363566-8363585	None:intergenic	40.0%
	TGGATTACATGTGTGTGTTC+AGG	+	chr7_3:8363567-8363586	None:intergenic	40.0%
	ACATGTAATCCAACTCTTCG+AGG	-	chr7_3:8363575-8363594	Msa1092110:intron	40.0%
	TGCGACTAAGTCTACTGAAA+GGG	+	chr7_3:8363679-8363698	None:intergenic	40.0%
	ATGCGACTAAGTCTACTGAA+AGG	+	chr7_3:8363680-8363699	None:intergenic	40.0%
	CGGAACTTGCACCTTTATTA+TGG	-	chr7_3:8364106-8364125	Msa1092110:intron	40.0%
	GTTCTTTGCTTTAGTACCTC+TGG	-	chr7_3:8364206-8364225	Msa1092110:CDS	40.0%
!	CAAGGAAAATAGTTTGCCAG+AGG	+	chr7_3:8364225-8364244	None:intergenic	40.0%
!!!	TGTCATTTTACAACCGGTTG+AGG	+	chr7_3:8364717-8364736	None:intergenic	40.0%
	AGATTCAACAGCGGAATAGT+AGG	+	chr7_3:8364871-8364890	None:intergenic	40.0%
!!	CAATGTTCTGGAACTACTTC+AGG	-	chr7_3:8364918-8364937	Msa1092110:intron	40.0%
!!	ACATGAGAGAAAAGTGCTAG+AGG	+	chr7_3:8365099-8365118	None:intergenic	40.0%
!!	CATTTAAGGCTTGCTAGTCT+TGG	-	chr7_3:8365582-8365601	Msa1092110:intron	40.0%
	TTGCAATCCTATTGTGCTCT+TGG	-	chr7_3:8366020-8366039	Msa1092110:intron	40.0%
	TCACAGGTTAACACCAAAGA+AGG	-	chr7_3:8366267-8366286	Msa1092110:intron	40.0%
!	CTCTTTTGTCTCAACATCCT+AGG	-	chr7_3:8366688-8366707	Msa1092110:intron	40.0%
	TTTGTCTCAACATCCTAGGT+TGG	-	chr7_3:8366692-8366711	Msa1092110:intron	40.0%
	GGGCTTGCAATGCATTAAAA+AGG	-	chr7_3:8366802-8366821	Msa1092110:CDS	40.0%
	TTCCATGGATGCCATGCTTT+GGG	+	chr7_3:8362501-8362520	None:intergenic	45.0%
!!	AGAGCATTTTCCCTGAGATC+AGG	+	chr7_3:8362548-8362567	None:intergenic	45.0%
!!	CTGCACTGTCACACTAGTTT+TGG	-	chr7_3:8362737-8362756	Msa1092110:CDS	45.0%
	GCGACTAAGTCTACTGAAAG+GGG	+	chr7_3:8363678-8363697	None:intergenic	45.0%
	GGCGAAAAACACAACAGTAG+TGG	-	chr7_3:8364355-8364374	Msa1092110:intron	45.0%
	TCCGCTGTTGAATCTTACTC+AGG	-	chr7_3:8364876-8364895	Msa1092110:intron	45.0%
	GCCTGAGTAAGATTCAACAG+CGG	+	chr7_3:8364880-8364899	None:intergenic	45.0%
	AACTCGAGTGTGCAATGTTC+TGG	-	chr7_3:8364906-8364925	Msa1092110:intron	45.0%
	GGATTTGAATTCTCTACGGC+TGG	-	chr7_3:8365392-8365411	Msa1092110:intron	45.0%
!	TCGCTTGTCGTTTGAAGGAA+TGG	+	chr7_3:8365546-8365565	None:intergenic	45.0%
!	CTAACTCGCTTGTCGTTTGA+AGG	+	chr7_3:8365551-8365570	None:intergenic	45.0%
!!	CTTGCTAGTCTTGGAGTCAT+TGG	-	chr7_3:8365591-8365610	Msa1092110:intron	45.0%
	TCTTGGAGTCATTGGTGCAT+TGG	-	chr7_3:8365599-8365618	Msa1092110:intron	45.0%
!	AGTCATTGGTGCATTGGTGA+AGG	-	chr7_3:8365605-8365624	Msa1092110:intron	45.0%
!!	CACAAGAAGTACTTACGCGA+AGG	+	chr7_3:8366869-8366888	None:intergenic	45.0%
!!!	TATTTTATTGTTTTTATTTT+AGG	-	chr7_3:8362772-8362791	Msa1092110:CDS	5.0%
!!!	ATTTTATTGTTTTTATTTTA+GGG	-	chr7_3:8362773-8362792	Msa1092110:CDS	5.0%
	GATTGGGATGAAGCAGTTCG+AGG	+	chr7_3:8362467-8362486	None:intergenic	50.0%
!	TTGGGCTGTGGTGCTAGATT+GGG	+	chr7_3:8362483-8362502	None:intergenic	50.0%
!	TTTGGGCTGTGGTGCTAGAT+TGG	+	chr7_3:8362484-8362503	None:intergenic	50.0%
	GTTCCATGGATGCCATGCTT+TGG	+	chr7_3:8362502-8362521	None:intergenic	50.0%
	TGCTCTTCGTGTTCTCTCCA+AGG	-	chr7_3:8362562-8362581	Msa1092110:intron	50.0%
	TGCCTACGCAGCATGGAAAT+CGG	-	chr7_3:8366327-8366346	Msa1092110:intron	50.0%
	TAGCACCACAGCCCAAAGCA+TGG	-	chr7_3:8362487-8362506	Msa1092110:CDS	55.0%
	AGCCCAAAGCATGGCATCCA+TGG	-	chr7_3:8362496-8362515	Msa1092110:CDS	55.0%
	TCCAAGAGGCTGTAGCTCAG+TGG	-	chr7_3:8364650-8364669	Msa1092110:intron	55.0%
	ACCACTGAGCTACAGCCTCT+TGG	+	chr7_3:8364654-8364673	None:intergenic	55.0%
	TCCACTATGCCTACGCAGCA+TGG	-	chr7_3:8366320-8366339	Msa1092110:intron	55.0%
	TCCATGCTGCGTAGGCATAG+TGG	+	chr7_3:8366324-8366343	None:intergenic	55.0%
!!	TGCCGATTTCCATGCTGCGT+AGG	+	chr7_3:8366332-8366351	None:intergenic	55.0%
!	GGATGCCATGCTTTGGGCTG+TGG	+	chr7_3:8362495-8362514	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	8362437	8366941	8362437	ID=Msa1092110;Name=Msa1092110
chr7_3	mRNA	8362437	8366941	8362437	ID=Msa1092110-mRNA-1;Parent=Msa1092110;Name=Msa1092110-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|0.85\|0.75\|8\|0\|326
chr7_3	exon	8366697	8366941	8366697	ID=Msa1092110-mRNA-1:exon:2441;Parent=Msa1092110-mRNA-1
chr7_3	exon	8365217	8365286	8365217	ID=Msa1092110-mRNA-1:exon:2440;Parent=Msa1092110-mRNA-1
chr7_3	exon	8364439	8364528	8364439	ID=Msa1092110-mRNA-1:exon:2439;Parent=Msa1092110-mRNA-1
chr7_3	exon	8364206	8364248	8364206	ID=Msa1092110-mRNA-1:exon:2438;Parent=Msa1092110-mRNA-1
chr7_3	exon	8363752	8363858	8363752	ID=Msa1092110-mRNA-1:exon:2437;Parent=Msa1092110-mRNA-1
chr7_3	exon	8363010	8363105	8363010	ID=Msa1092110-mRNA-1:exon:2436;Parent=Msa1092110-mRNA-1
chr7_3	exon	8362669	8362859	8362669	ID=Msa1092110-mRNA-1:exon:2435;Parent=Msa1092110-mRNA-1
chr7_3	exon	8362437	8362575	8362437	ID=Msa1092110-mRNA-1:exon:2434;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8366697	8366941	8366697	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8365217	8365286	8365217	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8364439	8364528	8364439	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8364206	8364248	8364206	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8363752	8363858	8363752	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8363010	8363105	8363010	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8362669	8362859	8362669	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1
chr7_3	CDS	8362437	8362575	8362437	ID=Msa1092110-mRNA-1:cds;Parent=Msa1092110-mRNA-1

Gene Sequence

>Msa1092110

ATGAATAATGTTGCGTCGTTTGTAAGTCCTCGAACTGCTTCATCCCAATCTAGCACCACAGCCCAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAAATGCTCTTCGTGTTCTCTCCAAGGTTTTTACCCATCTACTTTTCTTTTGTCCATTTTTAATATCTTTCATGGGATTCTCAAGAAATCCAGATCTTTGGAGAAGTTGTGATTCTCTAAAACTGATTGGGTTATTTCCGGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAAATATTTGTACAAGAAATAACTTCAATATATCCTACTATTCCGCTGTTGAATCTTACTCAGGCACAATCAACTCGAGTGTGCAATGTTCTGGAACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGTTAACACCAAAGAAGGCATAGATTTCCTTCTGAGAAGTGAGATAATTCCACTATGCCTACGCAGCATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGCTGAAAACTGTAAATTTCATCAATTGCCTTCGCGTAAGTACTTCTTGTGATATAAGTAAATATAAAATTGATTTAGAAATTTTTTTTATACACGTGATATGA

Protein sequence

>Msa1092110

MNNVASFVSPRTASSQSSTTAQSMASMERLVIELNNPDLRENALRVLSKVFTHLLFFCPFLISFMGFSRNPDLWRSCDSLKLIGLFPELAPLLWNSYGTIEIFVQEITSIYPTIPLLNLTQAQSTRVCNVLELLQCVASHPDTKMSFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKVNTKEGIDFLLRSEIIPLCLRSMEIGKELSKTVATFIIQKIMSDDDGLIYVCGTAERFFAVVQVLNMVLESVGNQPSHQLIKLLIPCYSLLSQHPRACNALKRRLPNMLKTVNFINCLRVSTSCDISKYKIDLEIFFIHVI*